FF:11905-125F6: Difference between revisions

Latest revision as of 18:28, 4 June 2020

Name:	immature langerhans cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13480
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	NA
age	NA
cell type	langerhans cell
cell line	NA
company	NA
collaboration	Teunis Geijtenbeek
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	LC-II
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005294

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13480		CAGE		DRX008544		DRR009416

Accession ID Hg19

Library id		BAM		CTSS
CNhs13480		DRZ000841		DRZ002226

Accession ID Hg38

Library id		BAM		CTSS
CNhs13480		DRZ012191		DRZ013576

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.174
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.179
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	1.37
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.406
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.204
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.521
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.249
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.42
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.405
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.314
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	1.256
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.346
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0.159
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.406
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.489
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.406
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.218
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.301
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.521
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.804
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.249
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.738
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.687
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.598
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.651
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.208
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.671
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.08
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.249
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.249
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.128
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.406
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0.807
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.249
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13480

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.127
MA0003.1	MA0003.1	0.149
MA0004.1	MA0004.1	0.631
MA0006.1	MA0006.1	0.571
MA0007.1	MA0007.1	0.433
MA0009.1	MA0009.1	0.237
MA0014.1	MA0014.1	0.102
MA0017.1	MA0017.1	0.0273
MA0018.2	MA0018.2	1.28226e-15
MA0019.1	MA0019.1	0.801
MA0024.1	MA0024.1	0.778
MA0025.1	MA0025.1	4.0164e-6
MA0027.1	MA0027.1	0.831
MA0028.1	MA0028.1	0.567
MA0029.1	MA0029.1	0.728
MA0030.1	MA0030.1	0.0121
MA0031.1	MA0031.1	0.616
MA0035.2	MA0035.2	0.504
MA0038.1	MA0038.1	0.831
MA0039.2	MA0039.2	1.40449e-4
MA0040.1	MA0040.1	0.853
MA0041.1	MA0041.1	0.492
MA0042.1	MA0042.1	0.449
MA0043.1	MA0043.1	3.4008e-12
MA0046.1	MA0046.1	0.369
MA0047.2	MA0047.2	0.329
MA0048.1	MA0048.1	0.213
MA0050.1	MA0050.1	0.721
MA0051.1	MA0051.1	0.755
MA0052.1	MA0052.1	1.73943e-6
MA0055.1	MA0055.1	0.0111
MA0057.1	MA0057.1	0.378
MA0058.1	MA0058.1	0.424
MA0059.1	MA0059.1	0.986
MA0060.1	MA0060.1	0.512
MA0061.1	MA0061.1	1.84304e-29
MA0062.2	MA0062.2	0.0315
MA0065.2	MA0065.2	0.199
MA0066.1	MA0066.1	0.146
MA0067.1	MA0067.1	3.67433e-9
MA0068.1	MA0068.1	0.134
MA0069.1	MA0069.1	0.263
MA0070.1	MA0070.1	0.402
MA0071.1	MA0071.1	0.496
MA0072.1	MA0072.1	0.591
MA0073.1	MA0073.1	0.382
MA0074.1	MA0074.1	0.763
MA0076.1	MA0076.1	0.536
MA0077.1	MA0077.1	0.543
MA0078.1	MA0078.1	0.237
MA0079.2	MA0079.2	0.0823
MA0080.2	MA0080.2	4.72138e-11
MA0081.1	MA0081.1	0.00399
MA0083.1	MA0083.1	0.112
MA0084.1	MA0084.1	0.986
MA0087.1	MA0087.1	0.216
MA0088.1	MA0088.1	0.00924
MA0090.1	MA0090.1	0.0431
MA0091.1	MA0091.1	0.199
MA0092.1	MA0092.1	0.69
MA0093.1	MA0093.1	0.624
MA0099.2	MA0099.2	2.23769e-24
MA0100.1	MA0100.1	0.392
MA0101.1	MA0101.1	8.77563e-32
MA0102.2	MA0102.2	0.00812
MA0103.1	MA0103.1	0.732
MA0104.2	MA0104.2	0.55
MA0105.1	MA0105.1	8.71082e-12
MA0106.1	MA0106.1	0.737
MA0107.1	MA0107.1	3.95704e-33
MA0108.2	MA0108.2	1.20646e-4
MA0111.1	MA0111.1	0.588
MA0112.2	MA0112.2	0.644
MA0113.1	MA0113.1	0.936
MA0114.1	MA0114.1	0.0496
MA0115.1	MA0115.1	0.227
MA0116.1	MA0116.1	0.603
MA0117.1	MA0117.1	7.84658e-4
MA0119.1	MA0119.1	0.0615
MA0122.1	MA0122.1	0.919
MA0124.1	MA0124.1	0.168
MA0125.1	MA0125.1	0.481
MA0131.1	MA0131.1	0.179
MA0135.1	MA0135.1	0.0278
MA0136.1	MA0136.1	3.0578e-11
MA0137.2	MA0137.2	0.99
MA0138.2	MA0138.2	0.058
MA0139.1	MA0139.1	0.0288
MA0140.1	MA0140.1	0.0986
MA0141.1	MA0141.1	0.112
MA0142.1	MA0142.1	0.591
MA0143.1	MA0143.1	0.145
MA0144.1	MA0144.1	0.863
MA0145.1	MA0145.1	0.963
MA0146.1	MA0146.1	0.601
MA0147.1	MA0147.1	0.62
MA0148.1	MA0148.1	0.213
MA0149.1	MA0149.1	0.432
MA0150.1	MA0150.1	2.32999e-5
MA0152.1	MA0152.1	0.759
MA0153.1	MA0153.1	0.0208
MA0154.1	MA0154.1	0.601
MA0155.1	MA0155.1	0.0243
MA0156.1	MA0156.1	0.00484
MA0157.1	MA0157.1	0.716
MA0159.1	MA0159.1	0.214
MA0160.1	MA0160.1	0.778
MA0162.1	MA0162.1	0.0922
MA0163.1	MA0163.1	0.148
MA0164.1	MA0164.1	0.782
MA0258.1	MA0258.1	0.713
MA0259.1	MA0259.1	0.75

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13480

Novel motif	Logo	P-value
1	1	0.918
10	10	0.492
100	100	0.944
101	101	0.0877
102	102	0.425
103	103	0.757
104	104	0.838
105	105	0.213
106	106	0.00378
107	107	0.987
108	108	0.786
109	109	0.574
11	11	0.527
110	110	0.938
111	111	0.403
112	112	0.371
113	113	0.744
114	114	0.258
115	115	0.238
116	116	0.244
117	117	0.15
118	118	0.312
119	119	0.367
12	12	0.132
120	120	0.662
121	121	0.282
122	122	0.226
123	123	0.588
124	124	0.00245
125	125	0.661
126	126	0.107
127	127	0.951
128	128	0.905
129	129	0.334
13	13	0.0103
130	130	0.645
131	131	0.369
132	132	0.144
133	133	0.124
134	134	0.637
135	135	0.039
136	136	0.0349
137	137	0.139
138	138	0.499
139	139	0.416
14	14	0.89
140	140	0.723
141	141	0.838
142	142	0.99
143	143	0.339
144	144	0.257
145	145	0.303
146	146	0.751
147	147	0.278
148	148	0.302
149	149	0.182
15	15	0.827
150	150	0.657
151	151	0.684
152	152	0.0407
153	153	0.506
154	154	0.585
155	155	0.184
156	156	0.722
157	157	0.533
158	158	0.773
159	159	0.0603
16	16	0.399
160	160	0.0439
161	161	0.252
162	162	0.132
163	163	0.0497
164	164	0.178
165	165	0.201
166	166	0.273
167	167	0.301
168	168	0.163
169	169	0.937
17	17	0.636
18	18	0.363
19	19	0.0179
2	2	0.105
20	20	0.0609
21	21	0.154
22	22	0.584
23	23	0.845
24	24	0.418
25	25	0.781
26	26	0.827
27	27	0.0419
28	28	0.548
29	29	0.23
3	3	0.862
30	30	0.927
31	31	0.417
32	32	4.71566e-4
33	33	0.123
34	34	0.48
35	35	0.321
36	36	0.511
37	37	0.597
38	38	0.864
39	39	0.874
4	4	0.781
40	40	0.459
41	41	0.721
42	42	0.966
43	43	0.992
44	44	0.337
45	45	0.828
46	46	0.631
47	47	0.766
48	48	0.595
49	49	0.4
5	5	0.969
50	50	0.826
51	51	0.92
52	52	0.346
53	53	0.988
54	54	0.758
55	55	0.583
56	56	0.514
57	57	0.354
58	58	0.686
59	59	0.56
6	6	0.942
60	60	0.362
61	61	0.504
62	62	0.841
63	63	0.989
64	64	0.426
65	65	0.991
66	66	0.558
67	67	0.742
68	68	0.71
69	69	0.0773
7	7	0.689
70	70	0.587
71	71	0.594
72	72	0.182
73	73	0.0706
74	74	0.0106
75	75	0.493
76	76	0.452
77	77	0.235
78	78	0.0645
79	79	0.102
8	8	0.0945
80	80	0.927
81	81	0.434
82	82	0.128
83	83	0.689
84	84	0.0185
85	85	0.742
86	86	0.187
87	87	0.0879
88	88	0.268
89	89	0.0851
9	9	0.857
90	90	0.761
91	91	0.948
92	92	0.12
93	93	0.41
94	94	0.819
95	95	0.112
96	96	0.983
97	97	0.433
98	98	0.763
99	99	3.01782e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13480

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011135 human immature langerhans cells sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000453 (Langerhans cell)
0000840 (immature conventional dendritic cell)
0001014 (CD1a-positive Langerhans cell)
0001016 (immature CD1a-positive Langerhans cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011135 (human immature langerhans cells sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005294
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0002031,CL:0000453,CL:0000840,CL:0001014,CL:0000037,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0001016,CL:0002009,CL:0001029
+|accession_numbers=CAGE;DRX008544;DRR009416;DRZ000841;DRZ002226;DRZ012191;DRZ013576
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000453,CL:0000840,CL:0001014,CL:0001016
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0011135
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr19:45971246..45971265,+!p1@FOSB!2.47!5021.97!FOSB;;chr11:47400078..47400106,-!p1@SPI1!2.42!264.64!SPI1;;chr17:80797886..80797906,-!p1@ZNF750!2.32!206.61!ZNF750;;chr9:102584159..102584174,+!p2@NR4A3!2.29!342.02!NR4A3;;chr1:209979467..209979494,-!p1@IRF6!2.28!213.57!IRF6;;chr12:52445218..52445237,+!p1@NR4A1!2.17!1745.70!NR4A1;;chr1:25291475..25291511,-!p2@RUNX3!2.17!148.57!RUNX3;;chr18:77155922..77155939,+!p1@NFATC1!2.16!372.20!NFATC1;;chr2:157189180..157189290,-!p1@NR4A2!2.12!640.71!NR4A2;;chr16:85932760..85932775,+!p1@IRF8!2.12!130.77!IRF8;;chr4:57547454..57547469,-!p1@HOPX!2.05!111.43!HOPX;;chr12:72056800..72056834,+!p1@THAP2!2.04!143.15!THAP2;;chr19:36391434..36391450,-!p1@NFKBID!2.03!200.41!NFKBID;;chr11:47400062..47400077,-!p2@SPI1!1.97!92.08!SPI1;;chr11:65554528..65554546,+!p1@OVOL1!1.94!85.89!OVOL1;;chr15:60884706..60884743,-!p1@RORA!1.93!414.76!RORA;;chr9:102584262..102584276,+!p1@NR4A3!1.92!177.20!NR4A3;;chr2:68592406..68592424,+!p1@PLEK!1.91!79.70!PLEK;;chr17:7493405..7493419,-!p1@SOX15!1.91!79.70!SOX15;;chr11:34642612..34642646,+!p1@EHF!1.89!77.38!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.88!74.28!IRF6;;chr8:22550982..22550999,-!p1@EGR3!1.87!196.55!EGR3;;chr19:54058073..54058088,+!p1@ZNF331!1.85!69.64!ZNF331;;chr11:65554563..65554576,+!p2@OVOL1!1.82!65.00!OVOL1;;chr22:38597987..38598021,+!p2@MAFF!1.80!359.82!MAFF;;chr14:35873947..35873965,-!p1@NFKBIA!1.78!3523.12!NFKBIA;;chr7:64342913..64342935,+!p2@ZNF273!1.75!55.71!ZNF273;;chr1:212782094..212782109,+!p1@ATF3!1.72!1317.78!ATF3;;chr14:75745523..75745537,+!p1@FOS!1.69!5406.55!FOS;;chr11:65668011..65668020,-!p3@FOSL1!1.69!47.98!FOSL1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.67!45.65!TFCP2L1;;chr20:55204351..55204377,+!p1@TFAP2C!1.66!56.49!TFAP2C;;chr20:50159198..50159299,-!p1@NFATC2!1.64!61.90!NFATC2;;chr12:72056749..72056767,+!p6@THAP2!1.63!46.43!THAP2;;chr10:104154415..104154434,+!p5@NFKB2!1.63!41.79!NFKB2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.61!461.96!ZC3H12A;;chr3:39195037..39195069,-!p2@CSRNP1!1.61!238.33!CSRNP1;;chr6:106534192..106534224,+!p1@PRDM1!1.61!109.11!PRDM1;;chr12:54785074..54785122,-!p2@ZNF385A!1.61!59.58!ZNF385A;;chr2:61108878..61108891,+!p5@REL!1.61!39.46!REL;;chr14:75746722..75746777,+!p2@FOS!1.60!48.75!FOS;;chr9:110252035..110252057,-!p1@KLF4!1.59!578.03!KLF4;;chr2:10091815..10091864,+!p1@GRHL1!1.59!49.52!GRHL1;;chr2:61108695..61108753,+!p1@REL!1.58!240.65!REL;;chr9:102584128..102584144,+!p3@NR4A3!1.57!68.09!NR4A3;;chr15:101069113..101069169,-!p1@CERS3!1.57!36.37!CERS3;;chr9:102584241..102584261,+!p4@NR4A3!1.56!53.39!NR4A3;;chr12:54785054..54785072,-!p4@ZNF385A!1.55!38.69!ZNF385A;;chr3:39195075..39195088,-!p1@CSRNP1!1.54!201.96!CSRNP1;;chr12:72056773..72056796,+!p3@THAP2!1.53!42.56!THAP2;;chr2:61108808..61108821,+!p3@REL!1.52!40.24!REL;;chr6:391743..391759,+!p1@IRF4!1.50!30.95!IRF4;;chr14:35872926..35872951,-!p4@NFKBIA!1.49!41.79!NFKBIA;;chr2:70142232..70142251,+!p1@MXD1!1.48!158.63!MXD1;;chr2:73520667..73520683,-!p1@EGR4!1.47!28.63!EGR4;;chr10:104155480..104155534,+!p2@NFKB2!1.46!173.33!NFKB2;;chr2:208394817..208394834,+!p3@CREB1!1.46!109.88!CREB1;;chr4:103422499..103422632,+!p1@NFKB1!1.45!540.11!NFKB1;;chr7:28725715..28725727,+!p3@CREB5!1.45!31.73!CREB5;;chr19:6110474..6110551,-!p1@RFX2!1.44!155.53!RFX2;;chr14:35872453..35872485,-!p2@NFKBIA!1.44!63.45!NFKBIA;;chr8:81397820..81397836,+!p2@ZBTB10!1.44!33.27!ZBTB10;;chr9:102584278..102584285,+!p5@NR4A3!1.44!26.31!NR4A3;;chr7:50344251..50344288,+!p3@IKZF1!1.42!25.54!IKZF1;;chr11:47400032..47400043,-!p5@SPI1!1.42!25.54!SPI1;;chr19:54041669..54041697,+!p2@ZNF331!1.40!23.99!ZNF331;;chr11:65686802..65686818,+!p6@DRAP1!1.39!40.24!DRAP1;;chr19:36389729..36389751,-!p3@NFKBID!1.38!23.21!NFKBID;;chrX:56258900..56258917,+!p4@KLF8!1.38!23.21!KLF8;;chr1:24646263..24646277,+!p4@GRHL3!1.37!22.44!GRHL3;;chr11:120110863..120110908,+!p2@POU2F3!1.37!22.44!POU2F3;;chr11:47399996..47400014,-!p4@SPI1!1.37!22.44!SPI1;;chr7:64342942..64342975,+!p5@ZNF273!1.36!21.67!ZNF273;;chr3:101546827..101546847,+!p2@NFKBIZ!1.35!30.18!NFKBIZ;;chr8:81397876..81397898,+!p5@ZBTB10!1.34!24.76!ZBTB10;;chr7:50344289..50344323,+!p1@IKZF1!1.34!20.89!IKZF1;;chr6:44233252..44233296,-!p1@NFKBIE!1.33!196.55!NFKBIE;;chr14:35872962..35873025,-!p3@NFKBIA!1.33!51.07!NFKBIA;;chr3:101568349..101568365,+!p1@NFKBIZ!1.32!988.92!NFKBIZ;;chr17:26833339..26833378,+!p1@FOXN1!1.32!20.12!FOXN1;;chr11:120107344..120107351,+!p1@POU2F3!1.31!23.21!POU2F3;;chr17:53342311..53342400,+!p1@HLF!1.31!22.44!HLF;;chr7:96654133..96654150,-!p1@DLX5!1.31!19.35!DLX5;;chr19:9732460..9732472,-!p2@ZNF561!1.31!19.35!ZNF561;;chr1:157108130..157108173,-!p1@ETV3!1.30!133.09!ETV3;;chr19:33793430..33793447,-!p1@CEBPA!1.30!78.93!CEBPA;;chr19:45252008..45252024,+!p2@BCL3!1.29!60.36!BCL3;;chr7:104654690..104654704,+!p2@MLL5!1.29!36.37!MLL5;;chr11:47399947..47399961,-!p3@SPI1!1.29!18.57!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!1.29!18.57!ZNF385A;;chr16:31885093..31885165,+!p1@ZNF267!1.28!265.41!ZNF267;;chr7:28725740..28725778,+!p1@CREB5!1.28!157.08!CREB5;;chr3:37218023..37218069,-!p3@LRRFIP2!1.27!27.86!LRRFIP2;;chr2:238600998..238601013,+!p5@LRRFIP1!1.27!17.80!LRRFIP1;;chr9:129567282..129567353,+!p1@ZBTB43!1.26!222.08!ZBTB43;;chr10:104155659..104155676,+!p4@NFKB2!1.26!21.67!NFKB2;;chr10:3827371..3827386,-!p2@KLF6!1.25!136.96!KLF6;;chr6:126240380..126240430,+!p2@NCOA7!1.24!42.56!NCOA7;;chr6:106534230..106534254,+!p2@PRDM1!1.24!41.01!PRDM1;;chr15:60884747..60884774,-!p3@RORA!1.24!39.46!RORA;;chr17:38256799..38256815,-!p3@NR1D1!1.24!29.40!NR1D1;;chr2:61108771..61108789,+!p4@REL!1.24!24.76!REL;;chrX:56258844..56258882,+!p1@KLF8!1.24!22.44!KLF8;;chr8:102218439..102218455,-!p3@ZNF706!1.24!16.25!ZNF706;;chr8:81397846..81397860,+!p3@ZBTB10!1.23!20.12!ZBTB10;;chr3:5022272..5022321,+!p7@BHLHE40!1.22!15.48!BHLHE40;;chr16:67881534..67881549,-!p4@CENPT!1.22!15.48!CENPT;;chr11:47400045..47400060,-!p6@SPI1!1.22!15.48!SPI1;;chr1:209979375..209979386,-!p4@IRF6!1.22!15.48!IRF6;;chr10:8096631..8096660,+!p1@GATA3!1.20!17.80!GATA3;;chr13:41593392..41593403,-!p7@ELF1!1.20!14.70!ELF1;;chr1:24645921..24645973,+!p2@GRHL3!1.20!14.70!GRHL3;;chr1:24645832..24645853,+!p1@GRHL3!1.17!13.93!GRHL3;;chr2:157189317..157189325,-!p8@NR4A2!1.17!13.93!NR4A2;;chr19:45504688..45504782,+!p1@RELB!1.16!81.25!RELB;;chr13:41635512..41635539,-!p2@ELF1!1.16!74.28!ELF1;;chr14:103059006..103059017,+!p2@RCOR1!1.16!20.89!RCOR1;;chr1:38512457..38512474,-!p1@POU3F1!1.16!14.70!POU3F1;;chr6:12011943..12012015,+!p2@HIVEP1!1.15!42.56!HIVEP1;;chr1:25256756..25256774,-!p1@RUNX3!1.15!24.76!RUNX3;;chr11:129245526..129245553,+!p1@BARX2!1.15!13.15!BARX2;;chrX:106960285..106960299,-!p1@TSC22D3!1.14!339.70!TSC22D3;;chr1:91487806..91487826,-!p5@ZNF644!1.14!22.44!ZNF644;;chr10:104154246..104154347,+!p3@NFKB2!1.13!75.83!NFKB2;;chr3:5021268..5021282,+!p4@BHLHE40!1.13!25.54!BHLHE40;;chrX:56258929..56258941,+!p7@KLF8!1.13!12.38!KLF8;;chr3:63897742..63897797,+!p2@ATXN7!1.12!41.01!ATXN7;;chr19:45250948..45250998,+!p3@BCL3!1.12!30.95!BCL3;;chr7:106809470..106809481,+!p2@HBP1!1.12!17.02!HBP1;;chr5:131826457..131826514,-!p1@IRF1!1.11!458.86!IRF1;;chr1:91487774..91487802,-!p2@ZNF644!1.11!31.73!ZNF644;;chr2:157199008..157199023,-!p3@NR4A2!1.11!24.76!NR4A2;;chr17:46620898..46620927,-!p9@HOXB2!1.11!13.93!HOXB2;;chr14:35872494..35872511,-!p5@NFKBIA!1.10!15.48!NFKBIA;;chr12:52448151..52448200,+!p8@NR4A1!1.10!11.61!NR4A1;;chr14:35872542..35872553,-!p10@NFKBIA!1.10!11.61!NFKBIA;;chr17:48072574..48072597,-!p1@DLX3!1.10!11.61!DLX3;;chr8:102504979..102505010,+!p2@GRHL2!1.10!11.61!GRHL2;;chr2:68592394..68592405,+!p2@PLEK!1.10!11.61!PLEK;;chr19:12902289..12902307,+!p1@JUNB!1.09!2613.13!JUNB;;chr10:3827389..3827408,-!p1@KLF6!1.09!858.15!KLF6;;chr10:35416142..35416169,+!p3@CREM!1.09!30.18!CREM;;chrX:84498989..84499003,+!p1@ZNF711!1.09!15.48!ZNF711;;chr2:8822176..8822196,+!p1@ID2!1.08!1563.85!ID2;;chr1:156470515..156470542,-!p2@MEF2D!1.08!58.04!MEF2D;;chr1:91487836..91487854,-!p3@ZNF644!1.08!25.54!ZNF644;;chr13:41593425..41593480,-!p1@ELF1!1.07!68.87!ELF1;;chr3:37217736..37217753,-!p2@LRRFIP2!1.07!45.65!LRRFIP2;;chr12:52448420..52448460,+!p5@NR4A1!1.07!10.83!NR4A1;;chr14:75747250..75747267,+!p5@FOS!1.07!10.83!FOS;;chr6:28048343..28048354,+!p1@ZNF165!1.07!10.83!ZNF165;;chr10:64576105..64576133,-!p1@EGR2!1.06!21.67!EGR2;;chr3:150126904..150126958,+!p7@TSC22D2!1.06!18.57!TSC22D2;;chr5:43121586..43121601,+!p10@ZNF131!1.05!11.61!ZNF131;;chr6:91006518..91006570,-!p1@BACH2!1.04!23.21!BACH2;;chr11:65430535..65430549,-!p4@RELA!1.04!11.61!RELA;;chr10:135121763..135121783,+!p5@ZNF511!1.04!10.06!ZNF511;;chr7:50343634..50343717,+!p2@IKZF1!1.04!10.06!IKZF1;;chr19:45972203..45972226,+!p5@FOSB!1.04!10.06!FOSB;;chr1:201979743..201979762,+!p1@ELF3!1.04!10.06!ELF3;;chr1:25256439..25256476,-!p3@RUNX3!1.04!10.06!RUNX3;;chr1:25291461..25291472,-!p11@RUNX3!1.04!10.06!RUNX3;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!1.03!62.68!SNAPC4;;chr7:17338324..17338341,+!p3@AHR!1.03!33.27!AHR;;chr5:43121711..43121753,+!p2@ZNF131!1.03!28.63!ZNF131;;chr12:24715376..24715432,-!p1@SOX5!1.03!12.38!SOX5;;chr11:65667846..65667868,-!p1@FOSL1!1.02!253.03!FOSL1;;chr12:48298765..48298783,-!p2@VDR!1.02!20.12!VDR;;chr7:104654718..104654741,+!p3@MLL5!1.02!13.93!MLL5;;chr3:5021113..5021180,+!p1@BHLHE40!1.01!652.32!BHLHE40;;chr22:38598086..38598105,+!p1@MAFF!1.01!99.82!MAFF;;chr17:38498594..38498661,+!p2@RARA!1.01!31.73!RARA;;chr17:40429090..40429125,-!p3@STAT5B!1.01!9.29!STAT5B;;chr12:52448213..52448262,+!p6@NR4A1!1.01!9.29!NR4A1;;chr12:72056706..72056717,+!p10@THAP2!1.01!9.29!THAP2;;chr13:41593405..41593416,-!p9@ELF1!1.01!9.29!ELF1;;chr19:45251395..45251432,+!p8@BCL3!1.01!9.29!BCL3;;chr1:209979449..209979460,-!p3@IRF6!1.01!9.29!IRF6;;chr2:10091922..10091935,+!p3@GRHL1!1.01!9.29!GRHL1;;chr2:157186630..157186686,-!p6@NR4A2!1.01!9.29!NR4A2;;chr3:169490834..169490863,+!p4@MYNN!1.01!9.29!MYNN;;chr3:189507432..189507459,+!p1@TP63!1.01!9.29!TP63;;chr4:106066730..106066754,+!p6@TET2!1.01!9.29!TET2;;chr4:83822294..83822306,+!p8@THAP9!1.01!9.29!THAP9;;chr11:13299319..1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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000451;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000453;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000840;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0001014;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor2.CNhs13480.11905-125F6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor2.CNhs13480.11905-125F6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor2.CNhs13480.11905-125F6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor2.CNhs13480.11905-125F6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor2.CNhs13480.11905-125F6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11905-125F6
 |is_a=EFO:0002091;;FF:0011135
 |is_obsolete=
+|library_id=CNhs13480
+|library_id_phase_based=2:CNhs13480
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11905
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11905
 |name=immature langerhans cells, donor2
 |namespace=
@@ Line 43: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13480,LSID1024,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
 |rna_catalog_number=
@@ Line 58: / Line 79: @@
 |rna_weight_ug=2.3359
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 74: / Line 96: @@
 |sample_note=
 |sample_sex=
-|sample_species=
+|sample_species=Human (Homo sapiens)
 |sample_strain=
 |sample_tissue=
 |top_motifs=ATF4:3.95509228109;CREB1:3.44622223278;ATF5_CREB3:3.41062198395;FOXN1:3.2485157992;NFKB1_REL_RELA:3.20387209803;TBX4,5:2.83983602183;PAX2:2.57572350892;JUN:2.55945164305;TLX2:2.46746446579;VSX1,2:1.91291854938;HSF1,2:1.84444684215;GLI1..3:1.81906439092;HIF1A:1.78247135509;FOS_FOS{B,L1}_JUN{B,D}:1.74831905445;TBP:1.69009481055;SP1:1.66304707109;FOSL2:1.61184093895;BACH2:1.56113142745;ZEB1:1.51524659291;POU2F1..3:1.43482783943;ATF2:1.39183317115;EGR1..3:1.35703701773;SPI1:1.32722991093;FOX{F1,F2,J1}:1.31199571964;TGIF1:1.29653960187;SPIB:1.24755712476;BPTF:1.22568198572;NFE2:1.18395986275;NFIL3:1.1691167152;MAFB:1.13543580439;FOX{D1,D2}:1.11544942238;RUNX1..3:1.05312736532;FOXQ1:0.984597814924;RFX2..5_RFXANK_RFXAP:0.917486009367;ETS1,2:0.823064678367;NANOG{mouse}:0.819731453464;NFE2L1:0.805307553375;SREBF1,2:0.767807973936;ATF6:0.73482945388;SNAI1..3:0.695866412864;EP300:0.603965931396;NANOG:0.599108111631;DMAP1_NCOR{1,2}_SMARC:0.481961868161;TP53:0.469400893014;XCPE1{core}:0.460884354354;RORA:0.417653878041;TFAP2{A,C}:0.411635034595;HMX1:0.382709071626;STAT5{A,B}:0.366550191658;IKZF1:0.343608949394;NKX2-1,4:0.307964611121;MED-1{core}:0.292508294893;FOXL1:0.282494679309;XBP1:0.262329687171;AHR_ARNT_ARNT2:0.25560407455;RFX1:0.242272563816;PITX1..3:0.228869630041;CEBPA,B_DDIT3:0.222417957745;FOXP1:0.213464986052;SRF:0.179185861715;MEF2{A,B,C,D}:0.13433626957;IRF1,2:0.123715355444;TFDP1:0.115633263464;NFE2L2:0.0958601051059;PAX4:0.0895911271672;PAX6:0.0810576069048;ZNF148:0.0702206170145;NFY{A,B,C}:0.0590877092833;ELF1,2,4:0.0150656214135;CDC5L:0.0025181913639;NFIX:-0.00145002754484;bHLH_family:-0.00228953472778;LMO2:-0.0522461350411;ESR1:-0.0563760370903;MYOD1:-0.0889885385707;FOXP3:-0.101255847834;SOX{8,9,10}:-0.119824452672;STAT1,3:-0.137434701281;POU5F1:-0.195676694509;E2F1..5:-0.221239316292;ZFP161:-0.227538195506;IRF7:-0.235964331271;POU1F1:-0.238456819154;POU6F1:-0.244612796524;NFATC1..3:-0.273402797279;MAZ:-0.278829005247;ESRRA:-0.280562092761;FOXM1:-0.288683938915;NR5A1,2:-0.303018869339;SOX2:-0.303098283757;GFI1:-0.30365872533;HLF:-0.305324267419;PAX5:-0.33530814056;CDX1,2,4:-0.338079776566;TFCP2:-0.349487303776;EN1,2:-0.354239293256;HOXA9_MEIS1:-0.368487240957;ELK1,4_GABP{A,B1}:-0.43610205506;MYB:-0.464886495144;PAX3,7:-0.469749210916;SOX17:-0.482760508569;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.497363103661;HES1:-0.508368547072;SMAD1..7,9:-0.512428531138;HIC1:-0.529227951054;ALX4:-0.534347776208;PPARG:-0.544325757231;POU3F1..4:-0.585959600244;HNF4A_NR2F1,2:-0.593190258413;MYFfamily:-0.639457973338;BREu{core}:-0.658096040518;NKX2-2,8:-0.673175501443;NKX6-1,2:-0.678031320314;MTE{core}:-0.691080280407;OCT4_SOX2{dimer}:-0.728052076882;RXRA_VDR{dimer}:-0.730308762072;GATA6:-0.740125454189;ZBTB16:-0.750333857239;STAT2,4,6:-0.756948777247;HBP1_HMGB_SSRP1_UBTF:-0.790138254811;PAX8:-0.800475079374;TFAP2B:-0.800493431172;ZBTB6:-0.809314376334;LEF1_TCF7_TCF7L1,2:-0.822279255645;HNF1A:-0.835079337744;TEAD1:-0.835391566591;GTF2A1,2:-0.846757767619;MYBL2:-0.852283850201;ZNF238:-0.860092138203;ONECUT1,2:-0.878018068128;TEF:-0.879296356306;TOPORS:-0.882142838429;NR3C1:-0.886708146214;NKX3-2:-0.890740124918;GCM1,2:-0.920716924851;ARID5B:-0.939644081698;SOX5:-0.958553624573;ZIC1..3:-0.961883156714;MZF1:-0.968679136662;NKX3-1:-0.989149178051;PDX1:-0.994780647216;IKZF2:-1.01208304909;RBPJ:-1.01233028482;AR:-1.01942322168;GTF2I:-1.04567644612;CUX2:-1.05362580696;PAX1,9:-1.06638813331;MTF1:-1.06926235675;PATZ1:-1.0806954265;HOX{A6,A7,B6,B7}:-1.08547754647;TLX1..3_NFIC{dimer}:-1.10003062063;FOXO1,3,4:-1.1043582733;PBX1:-1.13246512673;HOX{A5,B5}:-1.13980573577;LHX3,4:-1.15034319833;HOX{A4,D4}:-1.18901556303;NHLH1,2:-1.2024782326;NRF1:-1.20504991199;AIRE:-1.21227647127;TAL1_TCF{3,4,12}:-1.22601546114;EBF1:-1.23714796531;FOXA2:-1.25125710534;ZNF143:-1.25898313834;GFI1B:-1.31986710901;PRRX1,2:-1.34005306012;YY1:-1.34694819793;NKX2-3_NKX2-5:-1.42370231759;DBP:-1.43290757022;ALX1:-1.48322686087;NR6A1:-1.51396345277;FOX{I1,J2}:-1.53438691491;ZNF384:-1.53485262952;REST:-1.59114106289;SPZ1:-1.61353368106;NR1H4:-1.62057124014;TFAP4:-1.65862826008;UFEwm:-1.66780407856;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.74048253144;RREB1:-1.81134657287;CRX:-1.81181737856;ADNP_IRX_SIX_ZHX:-1.82271386171;EVI1:-1.85087036052;GZF1:-1.92532968128;FOXD3:-1.99244803221;ZNF423:-2.04031065738;HAND1,2:-2.16779547365;GATA4:-2.20944439537;KLF4:-2.2215426193;PRDM1:-2.24759169045;T:-2.75429996883;RXR{A,B,G}:-2.81274278414;HMGA1,2:-2.99370595067
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11905-125F6;search_select_hide=table117:FF:11905-125F6
 }}

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FF:11905-125F6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:28, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0