FF:10032-101E5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00004710 | ||
|accession_numbers=CAGE;DRX008712;DRR009584;DRZ001009;DRZ002394;DRZ012359;DRZ013744 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002581,UBERON:0001872,UBERON:0000200,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010032 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.62!415.42!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.42!259.93!OLIG1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.30!197.84!PEG3;;chr22:38380543..38380569,-!p1@SOX10!2.15!140.36!SOX10;;chr17:53342311..53342400,+!p1@HLF!2.06!130.82!HLF;;chr21:34398234..34398250,+!p1@OLIG2!2.00!100.11!OLIG2;;chr9:77112244..77112262,+!p1@RORB!1.95!98.33!RORB;;chr11:61520075..61520136,+!p1@C11orf9!1.93!172.72!C11orf9;;chr10:64134120..64134183,+!p1@ZNF365!1.87!86.62!ZNF365;;chr4:57547454..57547469,-!p1@HOPX!1.86!71.89!HOPX;;chr14:29235961..29236008,+!p1@FOXG1!1.86!70.84!FOXG1;;chr17:37764128..37764258,-!p1@NEUROD2!1.85!70.25!NEUROD2;;chr15:80733570..80733659,+!p2@ARNT2!1.82!65.18!ARNT2;;chr2:162272785..162272836,+!p1@TBR1!1.81!64.13!TBR1;;chr9:114287433..114287513,+!p1@ZNF483!1.80!157.00!ZNF483;;chr15:80735246..80735321,+!p3@ARNT2!1.76!56.96!ARNT2;;chr2:95963052..95963106,+!p1@KCNIP3!1.74!54.07!KCNIP3;;chr5:88178983..88179012,-!p1@MEF2C!1.73!383.59!MEF2C;;chr8:40755333..40755352,-!p1@ZMAT4!1.72!51.24!ZMAT4;;chr4:81118647..81118666,+!p1@PRDM8!1.70!63.73!PRDM8;;chr19:13135386..13135435,+!p4@NFIX!1.68!46.37!NFIX;;chr3:181429704..181429722,+!p1@SOX2!1.67!45.65!SOX2;;chr2:2334997..2335053,-!p1@MYT1L!1.67!45.58!MYT1L;;chr21:34442540..34442560,+!p2@OLIG1!1.65!43.21!OLIG1;;chr2:145277882..145277967,-!p3@ZEB2!1.63!70.77!ZEB2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.62!40.52!POU3F3;;chr19:13135582..13135600,+!p3@NFIX!1.61!39.53!NFIX;;chr2:166326200..166326216,+!p1@CSRNP3!1.58!52.95!CSRNP3;;chr2:60781201..60781258,-!p3@BCL11A!1.57!36.37!BCL11A;;chrX:25034067..25034088,-!p1@ARX!1.57!36.11!ARX;;chr18:53070846..53070902,-!p6@TCF4!1.55!34.40!TCF4;;chr12:26277817..26277863,-!p2@BHLHE41!1.52!42.95!BHLHE41;;chr16:1031762..1031781,+!p1@SOX8!1.50!30.39!SOX8;;chr15:80696703..80696754,+!p1@ARNT2!1.47!37.49!ARNT2;;chr14:29236269..29236285,+!p3@FOXG1!1.47!28.41!FOXG1;;chr3:181429741..181429767,+!p2@SOX2!1.46!28.08!SOX2;;chr5:88179017..88179046,-!p2@MEF2C!1.45!104.97!MEF2C;;chr8:145560371..145560449,-!p1@SCRT1!1.45!27.30!SCRT1;;chr11:125034640..125034655,+!p1@PKNOX2!1.44!26.37!PKNOX2;;chr2:95963120..95963136,+!p2@KCNIP3!1.44!26.37!KCNIP3;;chr22:41763452..41763466,+!p2@TEF!1.43!26.05!TEF;;chr10:134599649..134599653,-!p1@NKX6-2!1.43!25.85!NKX6-2;;chr8:53322304..53322340,-!p1@ST18!1.42!25.26!ST18;;chr11:113930425..113930471,+!p1@ZBTB16!1.41!35.06!ZBTB16;;chr11:8102846..8102892,+!p1@TUB!1.41!34.00!TUB;;chr4:57522166..57522260,-!p2@HOPX!1.41!28.02!HOPX;;chr19:57352109..57352153,-!p2@ZIM2!1.41!24.73!ZIM2;;chr19:38720294..38720348,-!p1@DPF1!1.40!29.93!DPF1;;chr7:31380292..31380351,-!p1@NEUROD6!1.40!24.40!NEUROD6;;chr14:29234581..29234601,+!p2@FOXG1!1.40!24.20!FOXG1;;chr12:106976774..106976788,+!p1@RFX4!1.38!23.22!RFX4;;chr12:54785074..54785122,-!p2@ZNF385A!1.37!34.00!ZNF385A;;chrY:21906594..21906622,-!p1@KDM5D!1.37!22.23!KDM5D;;chr1:151032860..151032918,+!p1@MLLT11!1.35!248.03!MLLT11;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.35!21.64!SMARCE1;;chr12:54779511..54779577,-!p5@ZNF385A!1.35!21.64!ZNF385A;;chr10:48355030..48355090,+!p1@ZNF488!1.33!26.31!ZNF488;;chr17:7492684..7492778,-!p2@SOX15!1.30!39.99!SOX15;;chr2:162272889..162272915,+!p2@TBR1!1.30!19.14!TBR1;;chr19:46801639..46801699,+!p1@HIF3A!1.30!18.94!HIF3A;;chr8:145560111..145560165,-!p2@SCRT1!1.30!18.81!SCRT1;;chr10:64133862..64133884,+!p4@ZNF365!1.29!18.55!ZNF365;;chr14:33403881..33403924,+!p1@NPAS3!1.29!18.55!NPAS3;;chr9:126774018..126774055,+!p1@LHX2!1.29!18.48!LHX2;;chr1:2461692..2461710,-!p1@HES5!1.27!17.76!HES5;;chr6:15401104..15401166,+!p5@JARID2!1.27!17.63!JARID2;;chr1:244214577..244214593,+!p1@ZNF238!1.25!16.77!ZNF238;;chr20:62680984..62680999,-!p1@SOX18!1.22!20.39!SOX18;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.22!15.79!POU3F3;;chr1:214161272..214161322,+!p1@PROX1!1.20!21.11!PROX1;;chr12:106976678..106976708,+!p2@RFX4!1.20!14.80!RFX4;;chr2:73520667..73520683,-!p1@EGR4!1.18!14.14!EGR4;;chr4:57522598..57522664,-!p3@HOPX!1.17!13.75!HOPX;;chr11:125034605..125034636,+!p2@PKNOX2!1.17!13.75!PKNOX2;;chr1:151032922..151032951,+!p2@MLLT11!1.16!22.23!MLLT11;;chr2:162272716..162272753,+!p3@TBR1!1.16!13.61!TBR1;;chr2:166428839..166428859,+!p2@CSRNP3!1.16!13.42!CSRNP3;;chr6:19837592..19837621,+!p1@ID4!1.15!78.93!ID4;;chr12:26277956..26277980,-!p1@BHLHE41!1.15!47.36!BHLHE41;;chr2:60780607..60780624,-!p2@BCL11A!1.15!40.65!BCL11A;;chr3:24536253..24536328,-!p1@THRB!1.15!24.53!THRB;;chr19:38085768..38085821,+!p1@ZNF540!1.15!19.60!ZNF540;;chrX:118739835..118739862,-!p1@NKRF!1.14!14.14!NKRF;;chr5:92920256..92920282,+!p7@NR2F1!1.13!15.26!NR2F1;;chrX:85969626..85969664,+!p1@DACH2!1.13!12.56!DACH2;;chr10:119302232..119302265,+!p1@EMX2!1.13!12.56!EMX2;;chr7:63505799..63505904,+!p1@ZNF727!1.13!12.43!ZNF727;;chr19:30863271..30863338,+!p1@ZNF536!1.13!12.37!ZNF536;;chr17:38256822..38256851,-!p1@NR1D1!1.12!96.55!NR1D1;;chr19:13134772..13134822,+!p2@NFIX!1.12!17.76!NFIX;;chr19:13135731..13135787,+!p10@NFIX!1.12!12.17!NFIX;;chr8:22550982..22550999,-!p1@EGR3!1.11!33.61!EGR3;;chr19:58545454..58545498,+!p1@ZSCAN1!1.11!11.84!ZSCAN1;;chr3:126076242..126076257,-!p1@KLF15!1.09!14.14!KLF15;;chr19:13135566..13135577,+!p9@NFIX!1.09!11.38!NFIX;;chr15:31658288..31658338,+!p4@KLF13!1.09!11.18!KLF13;;chrY:21906761..21906810,-!p2@KDM5D!1.09!11.18!KDM5D;;chr10:64133910..64133925,+!p5@ZNF365!1.07!10.85!ZNF365;;chr20:42544782..42544828,+!p4@TOX2!1.07!10.66!TOX2;;chr19:57183114..57183145,-!p1@ZNF835!1.06!11.77!ZNF835;;chr2:42721205..42721307,+!p4@MTA3!1.06!10.46!MTA3;;chr21:34442584..34442587,+!p3@OLIG1!1.05!10.33!OLIG1;;chr9:77112225..77112238,+!p2@RORB!1.05!10.26!RORB;;chr19:46800289..46800327,+!p2@HIF3A!1.05!10.13!HIF3A;;chr20:42574529..42574563,+!p3@TOX2!1.04!10.06!TOX2;;chr3:24536332..24536358,-!p2@THRB!1.04!10.00!THRB;;chr2:162273241..162273253,+!p4@TBR1!1.04!9.93!TBR1;;chr1:8585945..8586056,-!p3@RERE!1.03!32.89!RERE;;chr19:4065848..4065909,-!p4@ZBTB7A!1.03!19.34!ZBTB7A;;chr3:141105705..141105770,+!p4@ZBTB38!1.03!11.84!ZBTB38;;chr3:21792682..21792720,-!p1@ZNF385D!1.03!9.80!ZNF385D;;chr2:180726291..180726311,-!p1@ZNF385B!1.03!9.73!ZNF385B;;chr2:192015750..192015793,-!p2@STAT4!1.02!12.83!STAT4;;chr11:8102819..8102845,+!p3@TUB!1.02!11.77!TUB;;chr8:53322347..53322378,-!p2@ST18!1.02!9.54!ST18;;chr2:2335109..2335134,-!p2@MYT1L!1.02!9.41!MYT1L;;chr19:7580549..7580596,+!p3@ZNF358!1.02!9.41!ZNF358;;chr17:70117153..70117174,+!p1@SOX9!1.01!96.62!SOX9;;chr19:3359257..3359362,+!p3@NFIC!1.01!28.41!NFIC;;chr8:60031682..60031710,-!p2@TOX!1.01!15.19!TOX;;chr19:47523058..47523114,+!p1@NPAS1!1.01!9.27!NPAS1;;chr19:3359158..3359209,+!p5@NFIC!1.01!9.14!NFIC;;chr7:150974206..150974255,-!p1@SMARCD3!1.00!57.81!SMARCD3;;chr7:73038839..73038862,-!p1@MLXIPL!1.00!9.08!MLXIPL;;chr2:2335070..2335098,-!p4@MYT1L!1.00!9.08!MYT1L;;chrX:118739782..118739829,-!p2@NKRF!1.00!9.01!NKRF;;chr2:239148671..239148686,-!p1@HES6!0.99!32.62!HES6;;chr2:74229812..74229867,+!p1@TET3!0.99!22.23!TET3;;chr10:64134045..64134083,+!p3@ZNF365!0.99!8.75!ZNF365;;chr2:145275982..145276003,-!p7@ZEB2!0.99!8.68!ZEB2;;chr11:113930291..113930339,+!p2@ZBTB16!0.98!14.21!ZBTB16;;chr16:51185172..51185197,-!p1@SALL1!0.98!8.55!SALL1;;chr17:4890919..4890985,-!p1@CAMTA2!0.97!80.37!CAMTA2;;chr22:41777927..41777971,+!p1@TEF!0.97!70.97!TEF;;chr5:138609489..138609542,+!p8@MATR3!0.97!8.42!MATR3;;chr16:51185318..51185348,-!p2@SALL1!0.97!8.35!SALL1;;chr11:125034586..125034604,+!p3@PKNOX2!0.97!8.35!PKNOX2;;chr9:124991204..124991246,-!p1@LHX6!0.97!8.35!LHX6;;chr2:172949484..172949522,+!p1@DLX1!0.97!8.35!DLX1;;chr19:49140609..49140643,-!p1@DBP!0.96!47.09!DBP;;chrX:106959661..106959763,-!p4@TSC22D3!0.96!24.73!TSC22D3;;chr6:143266185..143266238,-!p2@HIVEP2!0.96!11.38!HIVEP2;;chr2:162273196..162273210,+!p5@TBR1!0.96!8.22!TBR1;;chr2:2330039..2330072,-!p6@MYT1L!0.96!8.09!MYT1L;;chr9:126773880..126773895,+!p2@LHX2!0.96!8.09!LHX2;;chr6:126112039..126112062,+!p8@NCOA7!0.95!9.73!NCOA7;;chr4:57522674..57522699,-!p5@HOPX!0.95!7.89!HOPX;;chr17:38219209..38219230,+!p1@THRA!0.94!104.58!THRA;;chr17:38256877..38256900,-!p2@NR1D1!0.94!25.85!NR1D1;;chr1:151032782..151032801,+!p4@MLLT11!0.94!15.65!MLLT11;;chr12:54785054..54785072,-!p4@ZNF385A!0.94!8.88!ZNF385A;;chr5:92919375..92919438,+!p6@NR2F1!0.94!8.35!NR2F1;;chr11:31832658..31832681,-!p1@PAX6!0.94!7.63!PAX6;;chr13:100634031..100634045,+!p1@ZIC2!0.94!7.63!ZIC2;;chr2:180726331..180726344,-!p5@ZNF385B!0.93!7.56!ZNF385B;;chr2:166428861..166428883,+!p3@CSRNP3!0.93!7.50!CSRNP3;;chr12:103351444..103351461,+!p1@ASCL1!0.93!7.50!ASCL1;;chr1:151032833..151032850,+!p3@MLLT11!0.92!17.04!MLLT11;;chr3:52001396..52001425,-!p4@PCBP4!0.92!13.29!PCBP4;;chr3:33482052..33482116,-!p2@UBP1!0.92!11.58!UBP1;;chr18:53068911..53068935,-!p4@TCF4!0.92!8.35!TCF4;;chr15:31631789..31631811,+!p13@KLF13!0.92!7.37!KLF13;;chr16:85932760..85932775,+!p1@IRF8!0.92!7.37!IRF8;;chr8:22550530..22550609,-!p2@EGR3!0.92!7.30!EGR3;;chr11:8040739..8040815,+!p4@TUB!0.92!7.30!TUB;;chr2:162273101..162273118,+!p7@TBR1!0.92!7.30!TBR1;;chr2:2328725..2328739,-!p5@MYT1L!0.92!7.30!MYT1L;;chr13:45010939..45011033,-!p1@TSC22D1!0.91!494.68!TSC22D1;;chr1:151032739..151032748,+!p6@MLLT11!0.91!9.01!MLLT11;;chr14:75894391..75894435,+!p2@JDP2!0.91!8.16!JDP2;;chrX:102000987..102001029,+!p3@BHLHB9!0.91!7.04!BHLHB9;;chr15:80696410..80696477,+!p6@ARNT2!0.90!6.91!ARNT2;;chr14:21994337..21994442,-!p1@SALL2!0.89!19.47!SALL2;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.89!14.86!ZNF395;;chr5:88179230..88179270,-!p4@MEF2C!0.89!13.48!MEF2C;;chr12:56583371..56583394,-!p2@SMARCC2!0.89!10.66!SMARCC2;;chr12:24102576..24102623,-!p2@SOX5!0.89!6.77!SOX5;;chr8:30890810..30890880,-!p1@PURG!0.89!6.77!PURG;;chr2:172950227..172950249,+!p2@DLX1!0.89!6.77!DLX1;;chr2:162273254..162273267,+!p6@TBR1!0.89!6.71!TBR1;;chr3:141105235..141105307,+!p7@ZBTB38!0.89!6.71!ZBTB38;;chr15:80696666..80696700,+!p4@ARNT2!0.89!6.71!ARNT2;;chr17:46131916..46131952,+!p7@NFE2L1!0.89!6.71!NFE2L1;;chr3:18466787..18466839,-!p1@SATB1!0.88!31.18!SATB1;;chr15:31618903..31618962,+!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| |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.62!415.42!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.42!259.93!OLIG1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.30!197.84!PEG3;;chr22:38380543..38380569,-!p1@SOX10!2.15!140.36!SOX10;;chr17:53342311..53342400,+!p1@HLF!2.06!130.82!HLF;;chr21:34398234..34398250,+!p1@OLIG2!2.00!100.11!OLIG2;;chr9:77112244..77112262,+!p1@RORB!1.95!98.33!RORB;;chr11:61520075..61520136,+!p1@C11orf9!1.93!172.72!C11orf9;;chr10:64134120..64134183,+!p1@ZNF365!1.87!86.62!ZNF365;;chr4:57547454..57547469,-!p1@HOPX!1.86!71.89!HOPX;;chr14:29235961..29236008,+!p1@FOXG1!1.86!70.84!FOXG1;;chr17:37764128..37764258,-!p1@NEUROD2!1.85!70.25!NEUROD2;;chr15:80733570..80733659,+!p2@ARNT2!1.82!65.18!ARNT2;;chr2:162272785..162272836,+!p1@TBR1!1.81!64.13!TBR1;;chr9:114287433..114287513,+!p1@ZNF483!1.80!157.00!ZNF483;;chr15:80735246..80735321,+!p3@ARNT2!1.76!56.96!ARNT2;;chr2:95963052..95963106,+!p1@KCNIP3!1.74!54.07!KCNIP3;;chr5:88178983..88179012,-!p1@MEF2C!1.73!383.59!MEF2C;;chr8:40755333..40755352,-!p1@ZMAT4!1.72!51.24!ZMAT4;;chr4:81118647..81118666,+!p1@PRDM8!1.70!63.73!PRDM8;;chr19:13135386..13135435,+!p4@NFIX!1.68!46.37!NFIX;;chr3:181429704..181429722,+!p1@SOX2!1.67!45.65!SOX2;;chr2:2334997..2335053,-!p1@MYT1L!1.67!45.58!MYT1L;;chr21:34442540..34442560,+!p2@OLIG1!1.65!43.21!OLIG1;;chr2:145277882..145277967,-!p3@ZEB2!1.63!70.77!ZEB2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.62!40.52!POU3F3;;chr19:13135582..13135600,+!p3@NFIX!1.61!39.53!NFIX;;chr2:166326200..166326216,+!p1@CSRNP3!1.58!52.95!CSRNP3;;chr2:60781201..60781258,-!p3@BCL11A!1.57!36.37!BCL11A;;chrX:25034067..25034088,-!p1@ARX!1.57!36.11!ARX;;chr18:53070846..53070902,-!p6@TCF4!1.55!34.40!TCF4;;chr12:26277817..26277863,-!p2@BHLHE41!1.52!42.95!BHLHE41;;chr16:1031762..1031781,+!p1@SOX8!1.50!30.39!SOX8;;chr15:80696703..80696754,+!p1@ARNT2!1.47!37.49!ARNT2;;chr14:29236269..29236285,+!p3@FOXG1!1.47!28.41!FOXG1;;chr3:181429741..181429767,+!p2@SOX2!1.46!28.08!SOX2;;chr5:88179017..88179046,-!p2@MEF2C!1.45!104.97!MEF2C;;chr8:145560371..145560449,-!p1@SCRT1!1.45!27.30!SCRT1;;chr11:125034640..125034655,+!p1@PKNOX2!1.44!26.37!PKNOX2;;chr2:95963120..95963136,+!p2@KCNIP3!1.44!26.37!KCNIP3;;chr22:41763452..41763466,+!p2@TEF!1.43!26.05!TEF;;chr10:134599649..134599653,-!p1@NKX6-2!1.43!25.85!NKX6-2;;chr8:53322304..53322340,-!p1@ST18!1.42!25.26!ST18;;chr11:113930425..113930471,+!p1@ZBTB16!1.41!35.06!ZBTB16;;chr11:8102846..8102892,+!p1@TUB!1.41!34.00!TUB;;chr4:57522166..57522260,-!p2@HOPX!1.41!28.02!HOPX;;chr19:57352109..57352153,-!p2@ZIM2!1.41!24.73!ZIM2;;chr19:38720294..38720348,-!p1@DPF1!1.40!29.93!DPF1;;chr7:31380292..31380351,-!p1@NEUROD6!1.40!24.40!NEUROD6;;chr14:29234581..29234601,+!p2@FOXG1!1.40!24.20!FOXG1;;chr12:106976774..106976788,+!p1@RFX4!1.38!23.22!RFX4;;chr12:54785074..54785122,-!p2@ZNF385A!1.37!34.00!ZNF385A;;chrY:21906594..21906622,-!p1@KDM5D!1.37!22.23!KDM5D;;chr1:151032860..151032918,+!p1@MLLT11!1.35!248.03!MLLT11;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.35!21.64!SMARCE1;;chr12:54779511..54779577,-!p5@ZNF385A!1.35!21.64!ZNF385A;;chr10:48355030..48355090,+!p1@ZNF488!1.33!26.31!ZNF488;;chr17:7492684..7492778,-!p2@SOX15!1.30!39.99!SOX15;;chr2:162272889..162272915,+!p2@TBR1!1.30!19.14!TBR1;;chr19:46801639..46801699,+!p1@HIF3A!1.30!18.94!HIF3A;;chr8:145560111..145560165,-!p2@SCRT1!1.30!18.81!SCRT1;;chr10:64133862..64133884,+!p4@ZNF365!1.29!18.55!ZNF365;;chr14:33403881..33403924,+!p1@NPAS3!1.29!18.55!NPAS3;;chr9:126774018..126774055,+!p1@LHX2!1.29!18.48!LHX2;;chr1:2461692..2461710,-!p1@HES5!1.27!17.76!HES5;;chr6:15401104..15401166,+!p5@JARID2!1.27!17.63!JARID2;;chr1:244214577..244214593,+!p1@ZNF238!1.25!16.77!ZNF238;;chr20:62680984..62680999,-!p1@SOX18!1.22!20.39!SOX18;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.22!15.79!POU3F3;;chr1:214161272..214161322,+!p1@PROX1!1.20!21.11!PROX1;;chr12:106976678..106976708,+!p2@RFX4!1.20!14.80!RFX4;;chr2:73520667..73520683,-!p1@EGR4!1.18!14.14!EGR4;;chr4:57522598..57522664,-!p3@HOPX!1.17!13.75!HOPX;;chr11:125034605..125034636,+!p2@PKNOX2!1.17!13.75!PKNOX2;;chr1:151032922..151032951,+!p2@MLLT11!1.16!22.23!MLLT11;;chr2:162272716..162272753,+!p3@TBR1!1.16!13.61!TBR1;;chr2:166428839..166428859,+!p2@CSRNP3!1.16!13.42!CSRNP3;;chr6:19837592..19837621,+!p1@ID4!1.15!78.93!ID4;;chr12:26277956..26277980,-!p1@BHLHE41!1.15!47.36!BHLHE41;;chr2:60780607..60780624,-!p2@BCL11A!1.15!40.65!BCL11A;;chr3:24536253..24536328,-!p1@THRB!1.15!24.53!THRB;;chr19:38085768..38085821,+!p1@ZNF540!1.15!19.60!ZNF540;;chrX:118739835..118739862,-!p1@NKRF!1.14!14.14!NKRF;;chr5:92920256..92920282,+!p7@NR2F1!1.13!15.26!NR2F1;;chrX:85969626..85969664,+!p1@DACH2!1.13!12.56!DACH2;;chr10:119302232..119302265,+!p1@EMX2!1.13!12.56!EMX2;;chr7:63505799..63505904,+!p1@ZNF727!1.13!12.43!ZNF727;;chr19:30863271..30863338,+!p1@ZNF536!1.13!12.37!ZNF536;;chr17:38256822..38256851,-!p1@NR1D1!1.12!96.55!NR1D1;;chr19:13134772..13134822,+!p2@NFIX!1.12!17.76!NFIX;;chr19:13135731..13135787,+!p10@NFIX!1.12!12.17!NFIX;;chr8:22550982..22550999,-!p1@EGR3!1.11!33.61!EGR3;;chr19:58545454..58545498,+!p1@ZSCAN1!1.11!11.84!ZSCAN1;;chr3:126076242..126076257,-!p1@KLF15!1.09!14.14!KLF15;;chr19:13135566..13135577,+!p9@NFIX!1.09!11.38!NFIX;;chr15:31658288..31658338,+!p4@KLF13!1.09!11.18!KLF13;;chrY:21906761..21906810,-!p2@KDM5D!1.09!11.18!KDM5D;;chr10:64133910..64133925,+!p5@ZNF365!1.07!10.85!ZNF365;;chr20:42544782..42544828,+!p4@TOX2!1.07!10.66!TOX2;;chr19:57183114..57183145,-!p1@ZNF835!1.06!11.77!ZNF835;;chr2:42721205..42721307,+!p4@MTA3!1.06!10.46!MTA3;;chr21:34442584..34442587,+!p3@OLIG1!1.05!10.33!OLIG1;;chr9:77112225..77112238,+!p2@RORB!1.05!10.26!RORB;;chr19:46800289..46800327,+!p2@HIF3A!1.05!10.13!HIF3A;;chr20:42574529..42574563,+!p3@TOX2!1.04!10.06!TOX2;;chr3:24536332..24536358,-!p2@THRB!1.04!10.00!THRB;;chr2:162273241..162273253,+!p4@TBR1!1.04!9.93!TBR1;;chr1:8585945..8586056,-!p3@RERE!1.03!32.89!RERE;;chr19:4065848..4065909,-!p4@ZBTB7A!1.03!19.34!ZBTB7A;;chr3:141105705..141105770,+!p4@ZBTB38!1.03!11.84!ZBTB38;;chr3:21792682..21792720,-!p1@ZNF385D!1.03!9.80!ZNF385D;;chr2:180726291..180726311,-!p1@ZNF385B!1.03!9.73!ZNF385B;;chr2:192015750..192015793,-!p2@STAT4!1.02!12.83!STAT4;;chr11:8102819..8102845,+!p3@TUB!1.02!11.77!TUB;;chr8:53322347..53322378,-!p2@ST18!1.02!9.54!ST18;;chr2:2335109..2335134,-!p2@MYT1L!1.02!9.41!MYT1L;;chr19:7580549..7580596,+!p3@ZNF358!1.02!9.41!ZNF358;;chr17:70117153..70117174,+!p1@SOX9!1.01!96.62!SOX9;;chr19:3359257..3359362,+!p3@NFIC!1.01!28.41!NFIC;;chr8:60031682..60031710,-!p2@TOX!1.01!15.19!TOX;;chr19:47523058..47523114,+!p1@NPAS1!1.01!9.27!NPAS1;;chr19:3359158..3359209,+!p5@NFIC!1.01!9.14!NFIC;;chr7:150974206..150974255,-!p1@SMARCD3!1.00!57.81!SMARCD3;;chr7:73038839..73038862,-!p1@MLXIPL!1.00!9.08!MLXIPL;;chr2:2335070..2335098,-!p4@MYT1L!1.00!9.08!MYT1L;;chrX:118739782..118739829,-!p2@NKRF!1.00!9.01!NKRF;;chr2:239148671..239148686,-!p1@HES6!0.99!32.62!HES6;;chr2:74229812..74229867,+!p1@TET3!0.99!22.23!TET3;;chr10:64134045..64134083,+!p3@ZNF365!0.99!8.75!ZNF365;;chr2:145275982..145276003,-!p7@ZEB2!0.99!8.68!ZEB2;;chr11:113930291..113930339,+!p2@ZBTB16!0.98!14.21!ZBTB16;;chr16:51185172..51185197,-!p1@SALL1!0.98!8.55!SALL1;;chr17:4890919..4890985,-!p1@CAMTA2!0.97!80.37!CAMTA2;;chr22:41777927..41777971,+!p1@TEF!0.97!70.97!TEF;;chr5:138609489..138609542,+!p8@MATR3!0.97!8.42!MATR3;;chr16:51185318..51185348,-!p2@SALL1!0.97!8.35!SALL1;;chr11:125034586..125034604,+!p3@PKNOX2!0.97!8.35!PKNOX2;;chr9:124991204..124991246,-!p1@LHX6!0.97!8.35!LHX6;;chr2:172949484..172949522,+!p1@DLX1!0.97!8.35!DLX1;;chr19:49140609..49140643,-!p1@DBP!0.96!47.09!DBP;;chrX:106959661..106959763,-!p4@TSC22D3!0.96!24.73!TSC22D3;;chr6:143266185..143266238,-!p2@HIVEP2!0.96!11.38!HIVEP2;;chr2:162273196..162273210,+!p5@TBR1!0.96!8.22!TBR1;;chr2:2330039..2330072,-!p6@MYT1L!0.96!8.09!MYT1L;;chr9:126773880..126773895,+!p2@LHX2!0.96!8.09!LHX2;;chr6:126112039..126112062,+!p8@NCOA7!0.95!9.73!NCOA7;;chr4:57522674..57522699,-!p5@HOPX!0.95!7.89!HOPX;;chr17:38219209..38219230,+!p1@THRA!0.94!104.58!THRA;;chr17:38256877..38256900,-!p2@NR1D1!0.94!25.85!NR1D1;;chr1:151032782..151032801,+!p4@MLLT11!0.94!15.65!MLLT11;;chr12:54785054..54785072,-!p4@ZNF385A!0.94!8.88!ZNF385A;;chr5:92919375..92919438,+!p6@NR2F1!0.94!8.35!NR2F1;;chr11:31832658..31832681,-!p1@PAX6!0.94!7.63!PAX6;;chr13:100634031..100634045,+!p1@ZIC2!0.94!7.63!ZIC2;;chr2:180726331..180726344,-!p5@ZNF385B!0.93!7.56!ZNF385B;;chr2:166428861..166428883,+!p3@CSRNP3!0.93!7.50!CSRNP3;;chr12:103351444..103351461,+!p1@ASCL1!0.93!7.50!ASCL1;;chr1:151032833..151032850,+!p3@MLLT11!0.92!17.04!MLLT11;;chr3:52001396..52001425,-!p4@PCBP4!0.92!13.29!PCBP4;;chr3:33482052..33482116,-!p2@UBP1!0.92!11.58!UBP1;;chr18:53068911..53068935,-!p4@TCF4!0.92!8.35!TCF4;;chr15:31631789..31631811,+!p13@KLF13!0.92!7.37!KLF13;;chr16:85932760..85932775,+!p1@IRF8!0.92!7.37!IRF8;;chr8:22550530..22550609,-!p2@EGR3!0.92!7.30!EGR3;;chr11:8040739..8040815,+!p4@TUB!0.92!7.30!TUB;;chr2:162273101..162273118,+!p7@TBR1!0.92!7.30!TBR1;;chr2:2328725..2328739,-!p5@MYT1L!0.92!7.30!MYT1L;;chr13:45010939..45011033,-!p1@TSC22D1!0.91!494.68!TSC22D1;;chr1:151032739..151032748,+!p6@MLLT11!0.91!9.01!MLLT11;;chr14:75894391..75894435,+!p2@JDP2!0.91!8.16!JDP2;;chrX:102000987..102001029,+!p3@BHLHB9!0.91!7.04!BHLHB9;;chr15:80696410..80696477,+!p6@ARNT2!0.90!6.91!ARNT2;;chr14:21994337..21994442,-!p1@SALL2!0.89!19.47!SALL2;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.89!14.86!ZNF395;;chr5:88179230..88179270,-!p4@MEF2C!0.89!13.48!MEF2C;;chr12:56583371..56583394,-!p2@SMARCC2!0.89!10.66!SMARCC2;;chr12:24102576..24102623,-!p2@SOX5!0.89!6.77!SOX5;;chr8:30890810..30890880,-!p1@PURG!0.89!6.77!PURG;;chr2:172950227..172950249,+!p2@DLX1!0.89!6.77!DLX1;;chr2:162273254..162273267,+!p6@TBR1!0.89!6.71!TBR1;;chr3:141105235..141105307,+!p7@ZBTB38!0.89!6.71!ZBTB38;;chr15:80696666..80696700,+!p4@ARNT2!0.89!6.71!ARNT2;;chr17:46131916..46131952,+!p7@NFE2L1!0.89!6.71!NFE2L1;;chr3:18466787..18466839,-!p1@SATB1!0.88!31.18!SATB1;;chr15:31618903..31618962,+!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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000200;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001872;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/postcentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10638.10032-101E5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/postcentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10638.10032-101E5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/postcentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10638.10032-101E5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/postcentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10638.10032-101E5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/postcentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10638.10032-101E5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10032-101E5 | |id=FF:10032-101E5 | ||
|is_a=EFO:0002091;;FF:0010032 | |is_a=EFO:0002091;;FF:0010032 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10638 | |||
|library_id_phase_based=2:CNhs10638 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10032 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10032 | |||
|name=postcentral gyrus, adult, pool1 | |name=postcentral gyrus, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10638,LSID657,release008,COMPLETED | |profile_hcage=CNhs10638,LSID657,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:636573 | |rna_catalog_number=Cat:636573 | ||
| Line 56: | Line 76: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.01E+07 | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 101: | ||
|top_motifs=REST:4.77298228866;NHLH1,2:4.30462972814;EGR1..3:3.93720889503;ZBTB6:3.64832739713;ZFP161:3.63197649213;AHR_ARNT_ARNT2:3.5998398497;MYFfamily:3.57362008041;PRRX1,2:3.54216225989;MTE{core}:3.51012993879;MED-1{core}:3.41271106431;TFAP2B:3.3770400854;MTF1:3.32753056724;PAX5:3.30110912844;ATF2:3.22654947328;HIC1:3.04436478467;GTF2I:2.90557735729;RREB1:2.88266041266;CUX2:2.77609673099;SMAD1..7,9:2.71866284539;RFX1:2.70915403158;FOXM1:2.70201062794;SOX5:2.5470752042;JUN:2.53479475007;BREu{core}:2.49919674755;LMO2:2.48302852887;DBP:2.40760434494;MZF1:2.3996103765;SOX{8,9,10}:2.33090385085;PATZ1:2.27263897183;SOX2:2.24946509605;PRDM1:2.1329449321;MAZ:2.1040443167;GFI1B:2.09801911224;TGIF1:2.03805152519;OCT4_SOX2{dimer}:2.01898992499;NKX2-3_NKX2-5:1.95743410859;EBF1:1.95681698197;POU6F1:1.94942437116;SOX17:1.9441363673;TFDP1:1.89943688249;GCM1,2:1.89545831032;ESRRA:1.89163579476;NKX3-2:1.8536811041;NFIX:1.81407563351;LEF1_TCF7_TCF7L1,2:1.74798816651;NANOG:1.71289607441;MAFB:1.70551086802;POU5F1:1.65876198292;PAX6:1.62953297674;GTF2A1,2:1.60709124211;HOXA9_MEIS1:1.60679247601;NRF1:1.55289219264;MYOD1:1.53090317007;RFX2..5_RFXANK_RFXAP:1.48312849626;ZNF238:1.47606693582;XBP1:1.46750979937;NFIL3:1.46407881181;ZNF423:1.4150150625;KLF4:1.39386287438;RORA:1.36457674403;POU3F1..4:1.36142718858;ARID5B:1.35382388865;EP300:1.35158962237;FOXQ1:1.2840941499;HOX{A4,D4}:1.24166520517;TFAP2{A,C}:1.23615758085;HAND1,2:1.22443204481;SP1:1.10347912616;HMGA1,2:1.090131856;GATA4:1.07308771577;CDC5L:1.07307991111;RBPJ:1.06815206806;FOX{F1,F2,J1}:1.06399678974;SREBF1,2:1.0545990175;MEF2{A,B,C,D}:0.970064002782;ZEB1:0.91482175438;ZNF143:0.848202851044;YY1:0.736457227203;CRX:0.731690789462;T:0.709485150472;CREB1:0.704393552759;HBP1_HMGB_SSRP1_UBTF:0.66090933053;HMX1:0.658004296292;SPZ1:0.62846538366;ADNP_IRX_SIX_ZHX:0.610399297843;TLX1..3_NFIC{dimer}:0.599612093046;TBX4,5:0.522303331449;XCPE1{core}:0.475915482513;GZF1:0.447232523478;HOX{A6,A7,B6,B7}:0.40101512938;STAT1,3:0.392659044912;FOXP1:0.392024037068;ATF4:0.385784257741;bHLH_family:0.369906002982;ZIC1..3:0.341210512588;TLX2:0.324486173528;ZNF384:0.322169156281;GFI1:0.303929863272;ATF5_CREB3:0.276895933031;FOX{D1,D2}:0.255734369182;FOXN1:0.248750912333;FOXP3:0.232441285755;ONECUT1,2:0.228266925283;AR:0.227962384809;PBX1:0.217532185604;NR5A1,2:0.202972849996;PAX2:0.167949494943;VSX1,2:0.129278434394;MYBL2:0.0951802879742;NFY{A,B,C}:0.030207771828;NFE2L2:0.00842821111314;PAX3,7:0.000185735713765;BPTF:-0.00413943598999;TFAP4:-0.00479684544094;IKZF1:-0.00913058749277;NR3C1:-0.0168219345268;PAX1,9:-0.019524472969;ZNF148:-0.0621103191152;SNAI1..3:-0.0948053490649;TOPORS:-0.113048037941;NR1H4:-0.139794672177;NANOG{mouse}:-0.140735566603;NFE2L1:-0.162957971075;LHX3,4:-0.165968656375;NKX6-1,2:-0.189835877155;IKZF2:-0.22516383126;PAX4:-0.246972640174;FOXL1:-0.248312673397;ESR1:-0.284139950928;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.30561065057;ALX1:-0.323169499585;TFCP2:-0.325624927517;NFE2:-0.373859822995;TEF:-0.388347997745;IRF7:-0.402439881679;PDX1:-0.416063931275;UFEwm:-0.432582666083;POU1F1:-0.439711196177;FOX{I1,J2}:-0.529626748986;SPI1:-0.534989311434;NFATC1..3:-0.567495274901;FOXA2:-0.584670244636;CEBPA,B_DDIT3:-0.619077664367;PAX8:-0.665244692617;GATA6:-0.666888222354;IRF1,2:-0.670580701716;TAL1_TCF{3,4,12}:-0.69070060248;GLI1..3:-0.704001632286;STAT2,4,6:-0.717084647368;TP53:-0.72453450131;ATF6:-0.743845420458;HNF1A:-0.755445304229;FOSL2:-0.763545293164;ETS1,2:-0.763983867398;FOXD3:-0.766408516353;SPIB:-0.817198050289;RXR{A,B,G}:-0.854505930925;PPARG:-0.89264226464;BACH2:-0.895775989365;FOS_FOS{B,L1}_JUN{B,D}:-0.909058581901;DMAP1_NCOR{1,2}_SMARC:-0.951345206009;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.969087428795;HNF4A_NR2F1,2:-0.973647218984;FOXO1,3,4:-0.985711787321;HSF1,2:-1.00843906091;TEAD1:-1.01658505281;RUNX1..3:-1.09787150894;TBP:-1.10769980418;ELK1,4_GABP{A,B1}:-1.11312590809;SRF:-1.16467200518;NFKB1_REL_RELA:-1.18470084149;HLF:-1.26395099265;HES1:-1.26449805169;E2F1..5:-1.30725261173;POU2F1..3:-1.34571372598;HIF1A:-1.35593892325;RXRA_VDR{dimer}:-1.3962325304;EN1,2:-1.44015126655;ALX4:-1.4792235415;NKX2-2,8:-1.51696301193;MYB:-1.59124169371;STAT5{A,B}:-1.59661085745;PITX1..3:-1.68145032075;ELF1,2,4:-1.80821187129;NKX3-1:-1.9180054832;EVI1:-1.95129094991;ZBTB16:-2.22045841439;HOX{A5,B5}:-2.25679118085;NKX2-1,4:-2.27707149899;CDX1,2,4:-2.59040866679;AIRE:-2.71688734095;NR6A1:-2.92438742515 | |top_motifs=REST:4.77298228866;NHLH1,2:4.30462972814;EGR1..3:3.93720889503;ZBTB6:3.64832739713;ZFP161:3.63197649213;AHR_ARNT_ARNT2:3.5998398497;MYFfamily:3.57362008041;PRRX1,2:3.54216225989;MTE{core}:3.51012993879;MED-1{core}:3.41271106431;TFAP2B:3.3770400854;MTF1:3.32753056724;PAX5:3.30110912844;ATF2:3.22654947328;HIC1:3.04436478467;GTF2I:2.90557735729;RREB1:2.88266041266;CUX2:2.77609673099;SMAD1..7,9:2.71866284539;RFX1:2.70915403158;FOXM1:2.70201062794;SOX5:2.5470752042;JUN:2.53479475007;BREu{core}:2.49919674755;LMO2:2.48302852887;DBP:2.40760434494;MZF1:2.3996103765;SOX{8,9,10}:2.33090385085;PATZ1:2.27263897183;SOX2:2.24946509605;PRDM1:2.1329449321;MAZ:2.1040443167;GFI1B:2.09801911224;TGIF1:2.03805152519;OCT4_SOX2{dimer}:2.01898992499;NKX2-3_NKX2-5:1.95743410859;EBF1:1.95681698197;POU6F1:1.94942437116;SOX17:1.9441363673;TFDP1:1.89943688249;GCM1,2:1.89545831032;ESRRA:1.89163579476;NKX3-2:1.8536811041;NFIX:1.81407563351;LEF1_TCF7_TCF7L1,2:1.74798816651;NANOG:1.71289607441;MAFB:1.70551086802;POU5F1:1.65876198292;PAX6:1.62953297674;GTF2A1,2:1.60709124211;HOXA9_MEIS1:1.60679247601;NRF1:1.55289219264;MYOD1:1.53090317007;RFX2..5_RFXANK_RFXAP:1.48312849626;ZNF238:1.47606693582;XBP1:1.46750979937;NFIL3:1.46407881181;ZNF423:1.4150150625;KLF4:1.39386287438;RORA:1.36457674403;POU3F1..4:1.36142718858;ARID5B:1.35382388865;EP300:1.35158962237;FOXQ1:1.2840941499;HOX{A4,D4}:1.24166520517;TFAP2{A,C}:1.23615758085;HAND1,2:1.22443204481;SP1:1.10347912616;HMGA1,2:1.090131856;GATA4:1.07308771577;CDC5L:1.07307991111;RBPJ:1.06815206806;FOX{F1,F2,J1}:1.06399678974;SREBF1,2:1.0545990175;MEF2{A,B,C,D}:0.970064002782;ZEB1:0.91482175438;ZNF143:0.848202851044;YY1:0.736457227203;CRX:0.731690789462;T:0.709485150472;CREB1:0.704393552759;HBP1_HMGB_SSRP1_UBTF:0.66090933053;HMX1:0.658004296292;SPZ1:0.62846538366;ADNP_IRX_SIX_ZHX:0.610399297843;TLX1..3_NFIC{dimer}:0.599612093046;TBX4,5:0.522303331449;XCPE1{core}:0.475915482513;GZF1:0.447232523478;HOX{A6,A7,B6,B7}:0.40101512938;STAT1,3:0.392659044912;FOXP1:0.392024037068;ATF4:0.385784257741;bHLH_family:0.369906002982;ZIC1..3:0.341210512588;TLX2:0.324486173528;ZNF384:0.322169156281;GFI1:0.303929863272;ATF5_CREB3:0.276895933031;FOX{D1,D2}:0.255734369182;FOXN1:0.248750912333;FOXP3:0.232441285755;ONECUT1,2:0.228266925283;AR:0.227962384809;PBX1:0.217532185604;NR5A1,2:0.202972849996;PAX2:0.167949494943;VSX1,2:0.129278434394;MYBL2:0.0951802879742;NFY{A,B,C}:0.030207771828;NFE2L2:0.00842821111314;PAX3,7:0.000185735713765;BPTF:-0.00413943598999;TFAP4:-0.00479684544094;IKZF1:-0.00913058749277;NR3C1:-0.0168219345268;PAX1,9:-0.019524472969;ZNF148:-0.0621103191152;SNAI1..3:-0.0948053490649;TOPORS:-0.113048037941;NR1H4:-0.139794672177;NANOG{mouse}:-0.140735566603;NFE2L1:-0.162957971075;LHX3,4:-0.165968656375;NKX6-1,2:-0.189835877155;IKZF2:-0.22516383126;PAX4:-0.246972640174;FOXL1:-0.248312673397;ESR1:-0.284139950928;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.30561065057;ALX1:-0.323169499585;TFCP2:-0.325624927517;NFE2:-0.373859822995;TEF:-0.388347997745;IRF7:-0.402439881679;PDX1:-0.416063931275;UFEwm:-0.432582666083;POU1F1:-0.439711196177;FOX{I1,J2}:-0.529626748986;SPI1:-0.534989311434;NFATC1..3:-0.567495274901;FOXA2:-0.584670244636;CEBPA,B_DDIT3:-0.619077664367;PAX8:-0.665244692617;GATA6:-0.666888222354;IRF1,2:-0.670580701716;TAL1_TCF{3,4,12}:-0.69070060248;GLI1..3:-0.704001632286;STAT2,4,6:-0.717084647368;TP53:-0.72453450131;ATF6:-0.743845420458;HNF1A:-0.755445304229;FOSL2:-0.763545293164;ETS1,2:-0.763983867398;FOXD3:-0.766408516353;SPIB:-0.817198050289;RXR{A,B,G}:-0.854505930925;PPARG:-0.89264226464;BACH2:-0.895775989365;FOS_FOS{B,L1}_JUN{B,D}:-0.909058581901;DMAP1_NCOR{1,2}_SMARC:-0.951345206009;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.969087428795;HNF4A_NR2F1,2:-0.973647218984;FOXO1,3,4:-0.985711787321;HSF1,2:-1.00843906091;TEAD1:-1.01658505281;RUNX1..3:-1.09787150894;TBP:-1.10769980418;ELK1,4_GABP{A,B1}:-1.11312590809;SRF:-1.16467200518;NFKB1_REL_RELA:-1.18470084149;HLF:-1.26395099265;HES1:-1.26449805169;E2F1..5:-1.30725261173;POU2F1..3:-1.34571372598;HIF1A:-1.35593892325;RXRA_VDR{dimer}:-1.3962325304;EN1,2:-1.44015126655;ALX4:-1.4792235415;NKX2-2,8:-1.51696301193;MYB:-1.59124169371;STAT5{A,B}:-1.59661085745;PITX1..3:-1.68145032075;ELF1,2,4:-1.80821187129;NKX3-1:-1.9180054832;EVI1:-1.95129094991;ZBTB16:-2.22045841439;HOX{A5,B5}:-2.25679118085;NKX2-1,4:-2.27707149899;CDX1,2,4:-2.59040866679;AIRE:-2.71688734095;NR6A1:-2.92438742515 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10032-101E5;search_select_hide=table117:FF:10032-101E5 | |||
}} | }} | ||
Latest revision as of 12:15, 3 June 2020
| Name: | postcentral gyrus, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10638 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10638
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10638
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.033 |
| 10 | 10 | 0.0217 |
| 100 | 100 | 0.297 |
| 101 | 101 | 0.924 |
| 102 | 102 | 0.701 |
| 103 | 103 | 0.178 |
| 104 | 104 | 0.17 |
| 105 | 105 | 0.338 |
| 106 | 106 | 0.0712 |
| 107 | 107 | 0.127 |
| 108 | 108 | 0.889 |
| 109 | 109 | 0.0102 |
| 11 | 11 | 0.016 |
| 110 | 110 | 0.0355 |
| 111 | 111 | 0.0609 |
| 112 | 112 | 0.328 |
| 113 | 113 | 0.675 |
| 114 | 114 | 0.0721 |
| 115 | 115 | 0.971 |
| 116 | 116 | 0.217 |
| 117 | 117 | 0.0079 |
| 118 | 118 | 0.0873 |
| 119 | 119 | 0.111 |
| 12 | 12 | 0.795 |
| 120 | 120 | 0.141 |
| 121 | 121 | 0.662 |
| 122 | 122 | 0.551 |
| 123 | 123 | 0.785 |
| 124 | 124 | 0.0252 |
| 125 | 125 | 0.156 |
| 126 | 126 | 0.0221 |
| 127 | 127 | 0.484 |
| 128 | 128 | 0.18 |
| 129 | 129 | 0.628 |
| 13 | 13 | 7.57082e-4 |
| 130 | 130 | 0.474 |
| 131 | 131 | 0.0774 |
| 132 | 132 | 0.697 |
| 133 | 133 | 0.00139 |
| 134 | 134 | 0.258 |
| 135 | 135 | 0.135 |
| 136 | 136 | 0.00964 |
| 137 | 137 | 0.708 |
| 138 | 138 | 0.791 |
| 139 | 139 | 0.0849 |
| 14 | 14 | 0.937 |
| 140 | 140 | 0.118 |
| 141 | 141 | 0.23 |
| 142 | 142 | 0.945 |
| 143 | 143 | 0.0104 |
| 144 | 144 | 0.848 |
| 145 | 145 | 0.102 |
| 146 | 146 | 0.649 |
| 147 | 147 | 0.939 |
| 148 | 148 | 0.151 |
| 149 | 149 | 0.376 |
| 15 | 15 | 0.0658 |
| 150 | 150 | 0.162 |
| 151 | 151 | 0.706 |
| 152 | 152 | 0.156 |
| 153 | 153 | 0.63 |
| 154 | 154 | 0.585 |
| 155 | 155 | 0.357 |
| 156 | 156 | 0.44 |
| 157 | 157 | 0.355 |
| 158 | 158 | 0.877 |
| 159 | 159 | 0.139 |
| 16 | 16 | 0.0752 |
| 160 | 160 | 0.222 |
| 161 | 161 | 0.163 |
| 162 | 162 | 0.882 |
| 163 | 163 | 0.737 |
| 164 | 164 | 0.0159 |
| 165 | 165 | 0.0205 |
| 166 | 166 | 0.811 |
| 167 | 167 | 0.266 |
| 168 | 168 | 0.692 |
| 169 | 169 | 0.00764 |
| 17 | 17 | 0.187 |
| 18 | 18 | 0.214 |
| 19 | 19 | 0.217 |
| 2 | 2 | 0.933 |
| 20 | 20 | 0.0729 |
| 21 | 21 | 0.0873 |
| 22 | 22 | 0.263 |
| 23 | 23 | 0.429 |
| 24 | 24 | 0.11 |
| 25 | 25 | 0.443 |
| 26 | 26 | 4.21253e-5 |
| 27 | 27 | 0.957 |
| 28 | 28 | 0.603 |
| 29 | 29 | 0.00821 |
| 3 | 3 | 0.0228 |
| 30 | 30 | 0.532 |
| 31 | 31 | 0.95 |
| 32 | 32 | 0.035 |
| 33 | 33 | 0.0684 |
| 34 | 34 | 0.859 |
| 35 | 35 | 0.52 |
| 36 | 36 | 0.1 |
| 37 | 37 | 0.0421 |
| 38 | 38 | 0.327 |
| 39 | 39 | 0.261 |
| 4 | 4 | 0.986 |
| 40 | 40 | 0.0664 |
| 41 | 41 | 0.464 |
| 42 | 42 | 0.152 |
| 43 | 43 | 0.105 |
| 44 | 44 | 0.0855 |
| 45 | 45 | 0.855 |
| 46 | 46 | 0.0487 |
| 47 | 47 | 0.0644 |
| 48 | 48 | 0.0583 |
| 49 | 49 | 0.138 |
| 5 | 5 | 0.431 |
| 50 | 50 | 0.36 |
| 51 | 51 | 0.561 |
| 52 | 52 | 0.653 |
| 53 | 53 | 0.891 |
| 54 | 54 | 0.515 |
| 55 | 55 | 0.3 |
| 56 | 56 | 0.502 |
| 57 | 57 | 0.246 |
| 58 | 58 | 0.281 |
| 59 | 59 | 0.172 |
| 6 | 6 | 0.58 |
| 60 | 60 | 0.0745 |
| 61 | 61 | 0.0561 |
| 62 | 62 | 0.158 |
| 63 | 63 | 0.177 |
| 64 | 64 | 0.231 |
| 65 | 65 | 0.323 |
| 66 | 66 | 0.277 |
| 67 | 67 | 0.358 |
| 68 | 68 | 0.36 |
| 69 | 69 | 0.479 |
| 7 | 7 | 0.0501 |
| 70 | 70 | 0.0228 |
| 71 | 71 | 0.00724 |
| 72 | 72 | 0.486 |
| 73 | 73 | 0.047 |
| 74 | 74 | 0.487 |
| 75 | 75 | 0.0272 |
| 76 | 76 | 0.333 |
| 77 | 77 | 0.29 |
| 78 | 78 | 0.00224 |
| 79 | 79 | 0.171 |
| 8 | 8 | 0.0562 |
| 80 | 80 | 0.939 |
| 81 | 81 | 0.59 |
| 82 | 82 | 0.486 |
| 83 | 83 | 0.188 |
| 84 | 84 | 0.694 |
| 85 | 85 | 0.309 |
| 86 | 86 | 0.197 |
| 87 | 87 | 0.0125 |
| 88 | 88 | 0.841 |
| 89 | 89 | 0.613 |
| 9 | 9 | 0.548 |
| 90 | 90 | 0.0345 |
| 91 | 91 | 0.348 |
| 92 | 92 | 0.44 |
| 93 | 93 | 0.791 |
| 94 | 94 | 0.0652 |
| 95 | 95 | 0.0272 |
| 96 | 96 | 0.948 |
| 97 | 97 | 0.761 |
| 98 | 98 | 0.224 |
| 99 | 99 | 0.94 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10638
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002581 (postcentral gyrus)
0001872 (parietal lobe)
0000200 (gyrus)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010032 (human postcentral gyrus - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
