FF:10036-101E9: Difference between revisions

Latest revision as of 12:16, 3 June 2020

Name:	occipital pole, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10643
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	occipital pole
dev stage	22-68 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	3040374
catalog number	Cat:636570
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005831

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10643		CAGE		DRX008694		DRR009566

Accession ID Hg19

Library id		BAM		CTSS
CNhs10643		DRZ000991		DRZ002376

Accession ID Hg38

Library id		BAM		CTSS
CNhs10643		DRZ012341		DRZ013726

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.294
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0469
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.401
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.029
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.091
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.568
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.171
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.106
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.106
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.106
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0253
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0475
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.158
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.029
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0661
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.106
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.135
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.758
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.029
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0672
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.576
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.029
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.584
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.21
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0747
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.364
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.171
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.129
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.483
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.21
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.607
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0563
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.106
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.0819
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.74
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.0563
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.129
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.351
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.029
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.0819
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10643

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00991
MA0003.1	MA0003.1	0.455
MA0004.1	MA0004.1	0.55
MA0006.1	MA0006.1	0.451
MA0007.1	MA0007.1	0.23
MA0009.1	MA0009.1	0.161
MA0014.1	MA0014.1	0.587
MA0017.1	MA0017.1	0.00833
MA0018.2	MA0018.2	0.038
MA0019.1	MA0019.1	0.493
MA0024.1	MA0024.1	0.886
MA0025.1	MA0025.1	0.107
MA0027.1	MA0027.1	0.732
MA0028.1	MA0028.1	0.0791
MA0029.1	MA0029.1	0.341
MA0030.1	MA0030.1	0.0965
MA0031.1	MA0031.1	0.796
MA0035.2	MA0035.2	0.285
MA0038.1	MA0038.1	0.0432
MA0039.2	MA0039.2	0.266
MA0040.1	MA0040.1	0.263
MA0041.1	MA0041.1	0.137
MA0042.1	MA0042.1	0.548
MA0043.1	MA0043.1	0.246
MA0046.1	MA0046.1	0.473
MA0047.2	MA0047.2	0.191
MA0048.1	MA0048.1	0.0881
MA0050.1	MA0050.1	0.00335
MA0051.1	MA0051.1	0.0983
MA0052.1	MA0052.1	0.037
MA0055.1	MA0055.1	0.00263
MA0057.1	MA0057.1	0.962
MA0058.1	MA0058.1	0.498
MA0059.1	MA0059.1	0.0857
MA0060.1	MA0060.1	0.116
MA0061.1	MA0061.1	0.0109
MA0062.2	MA0062.2	0.0205
MA0065.2	MA0065.2	0.00108
MA0066.1	MA0066.1	0.044
MA0067.1	MA0067.1	0.777
MA0068.1	MA0068.1	0.0898
MA0069.1	MA0069.1	0.424
MA0070.1	MA0070.1	0.0364
MA0071.1	MA0071.1	0.0847
MA0072.1	MA0072.1	0.736
MA0073.1	MA0073.1	0.56
MA0074.1	MA0074.1	0.252
MA0076.1	MA0076.1	0.202
MA0077.1	MA0077.1	0.204
MA0078.1	MA0078.1	0.892
MA0079.2	MA0079.2	0.29
MA0080.2	MA0080.2	1.19425e-7
MA0081.1	MA0081.1	0.0565
MA0083.1	MA0083.1	0.221
MA0084.1	MA0084.1	0.751
MA0087.1	MA0087.1	0.411
MA0088.1	MA0088.1	0.118
MA0090.1	MA0090.1	0.292
MA0091.1	MA0091.1	0.572
MA0092.1	MA0092.1	0.434
MA0093.1	MA0093.1	0.587
MA0099.2	MA0099.2	7.89969e-8
MA0100.1	MA0100.1	0.582
MA0101.1	MA0101.1	0.00691
MA0102.2	MA0102.2	0.178
MA0103.1	MA0103.1	0.319
MA0104.2	MA0104.2	0.411
MA0105.1	MA0105.1	2.54738e-4
MA0106.1	MA0106.1	0.0352
MA0107.1	MA0107.1	0.0137
MA0108.2	MA0108.2	0.0543
MA0111.1	MA0111.1	0.374
MA0112.2	MA0112.2	0.0013
MA0113.1	MA0113.1	0.282
MA0114.1	MA0114.1	0.00597
MA0115.1	MA0115.1	0.393
MA0116.1	MA0116.1	0.00229
MA0117.1	MA0117.1	0.901
MA0119.1	MA0119.1	0.024
MA0122.1	MA0122.1	0.887
MA0124.1	MA0124.1	0.716
MA0125.1	MA0125.1	0.26
MA0131.1	MA0131.1	0.81
MA0135.1	MA0135.1	0.00676
MA0136.1	MA0136.1	4.06492e-9
MA0137.2	MA0137.2	0.393
MA0138.2	MA0138.2	0.115
MA0139.1	MA0139.1	0.416
MA0140.1	MA0140.1	0.0386
MA0141.1	MA0141.1	0.0419
MA0142.1	MA0142.1	0.959
MA0143.1	MA0143.1	0.9
MA0144.1	MA0144.1	0.258
MA0145.1	MA0145.1	0.288
MA0146.1	MA0146.1	0.0137
MA0147.1	MA0147.1	0.296
MA0148.1	MA0148.1	0.151
MA0149.1	MA0149.1	0.0148
MA0150.1	MA0150.1	0.00331
MA0152.1	MA0152.1	0.629
MA0153.1	MA0153.1	0.579
MA0154.1	MA0154.1	0.0448
MA0155.1	MA0155.1	0.859
MA0156.1	MA0156.1	4.48272e-5
MA0157.1	MA0157.1	0.731
MA0159.1	MA0159.1	0.00714
MA0160.1	MA0160.1	0.0934
MA0162.1	MA0162.1	0.132
MA0163.1	MA0163.1	7.65644e-7
MA0164.1	MA0164.1	0.798
MA0258.1	MA0258.1	0.0149
MA0259.1	MA0259.1	0.692

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10643

Novel motif	Logo	P-value
1	1	0.0234
10	10	0.0173
100	100	0.248
101	101	0.86
102	102	0.757
103	103	0.22
104	104	0.244
105	105	0.406
106	106	0.0891
107	107	0.137
108	108	0.839
109	109	0.016
11	11	0.0151
110	110	0.0331
111	111	0.0419
112	112	0.358
113	113	0.845
114	114	0.0596
115	115	0.892
116	116	0.23
117	117	0.00745
118	118	0.0813
119	119	0.0989
12	12	0.92
120	120	0.132
121	121	0.708
122	122	0.391
123	123	0.283
124	124	0.066
125	125	0.161
126	126	0.0375
127	127	0.499
128	128	0.22
129	129	0.666
13	13	0.00105
130	130	0.752
131	131	0.124
132	132	0.67
133	133	0.00594
134	134	0.264
135	135	0.193
136	136	0.0154
137	137	0.644
138	138	0.771
139	139	0.0686
14	14	0.91
140	140	0.0831
141	141	0.188
142	142	0.803
143	143	0.0106
144	144	0.8
145	145	0.0795
146	146	0.75
147	147	0.878
148	148	0.116
149	149	0.388
15	15	0.0661
150	150	0.181
151	151	0.705
152	152	0.194
153	153	0.539
154	154	0.71
155	155	0.316
156	156	0.518
157	157	0.45
158	158	0.591
159	159	0.366
16	16	0.0871
160	160	0.215
161	161	0.216
162	162	0.971
163	163	0.886
164	164	0.0142
165	165	0.0378
166	166	0.836
167	167	0.161
168	168	0.68
169	169	0.00692
17	17	0.215
18	18	0.238
19	19	0.249
2	2	0.899
20	20	0.0854
21	21	0.101
22	22	0.305
23	23	0.474
24	24	0.142
25	25	0.446
26	26	6.57634e-5
27	27	0.951
28	28	0.571
29	29	0.00849
3	3	0.0179
30	30	0.431
31	31	0.972
32	32	0.0394
33	33	0.0768
34	34	0.973
35	35	0.461
36	36	0.0842
37	37	0.0421
38	38	0.347
39	39	0.306
4	4	0.944
40	40	0.0741
41	41	0.492
42	42	0.14
43	43	0.108
44	44	0.0941
45	45	0.94
46	46	0.0481
47	47	0.0583
48	48	0.0561
49	49	0.119
5	5	0.376
50	50	0.436
51	51	0.55
52	52	0.747
53	53	0.998
54	54	0.506
55	55	0.295
56	56	0.507
57	57	0.212
58	58	0.25
59	59	0.22
6	6	0.475
60	60	0.0974
61	61	0.0613
62	62	0.136
63	63	0.179
64	64	0.223
65	65	0.347
66	66	0.385
67	67	0.346
68	68	0.336
69	69	0.462
7	7	0.0555
70	70	0.0263
71	71	0.00764
72	72	0.523
73	73	0.0573
74	74	0.49
75	75	0.0248
76	76	0.286
77	77	0.302
78	78	0.00261
79	79	0.22
8	8	0.0463
80	80	0.929
81	81	0.495
82	82	0.44
83	83	0.229
84	84	0.7
85	85	0.275
86	86	0.22
87	87	0.0291
88	88	0.864
89	89	0.604
9	9	0.642
90	90	0.0188
91	91	0.31
92	92	0.4
93	93	0.855
94	94	0.0554
95	95	0.0376
96	96	0.898
97	97	0.807
98	98	0.203
99	99	0.981

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10643

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010036 human occipital pole - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002902 (occipital pole)
0002021 (occipital lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0009899 (pole of cerebral hemisphere)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010036 (human occipital pole - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005831
+|accession_numbers=CAGE;DRX008694;DRR009566;DRZ000991;DRZ002376;DRZ012341;DRZ013726
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002902,UBERON:0002021,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0009899,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.65!448.42!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.45!282.30!OLIG1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.37!234.44!PEG3;;chr22:38380543..38380569,-!p1@SOX10!2.20!157.40!SOX10;;chr9:77112244..77112262,+!p1@RORB!2.19!170.40!RORB;;chr17:53342311..53342400,+!p1@HLF!2.12!150.00!HLF;;chr21:34398234..34398250,+!p1@OLIG2!2.04!107.54!OLIG2;;chr11:61520075..61520136,+!p1@C11orf9!1.99!199.52!C11orf9;;chr4:57547454..57547469,-!p1@HOPX!1.95!88.18!HOPX;;chr14:29235961..29236008,+!p1@FOXG1!1.88!75.66!FOXG1;;chr4:81118647..81118666,+!p1@PRDM8!1.87!95.78!PRDM8;;chr10:64134120..64134183,+!p1@ZNF365!1.84!80.43!ZNF365;;chr17:37764128..37764258,-!p1@NEUROD2!1.82!65.01!NEUROD2;;chr19:13135386..13135435,+!p4@NFIX!1.82!64.87!NFIX;;chr19:13135582..13135600,+!p3@NFIX!1.81!63.14!NFIX;;chr2:162272785..162272836,+!p1@TBR1!1.79!60.79!TBR1;;chr8:40755333..40755352,-!p1@ZMAT4!1.79!60.65!ZMAT4;;chr5:88178983..88179012,-!p1@MEF2C!1.78!432.23!MEF2C;;chr2:95963052..95963106,+!p1@KCNIP3!1.77!57.82!KCNIP3;;chr15:80735246..80735321,+!p3@ARNT2!1.73!52.91!ARNT2;;chr9:114287433..114287513,+!p1@ZNF483!1.71!125.31!ZNF483;;chr2:60781201..60781258,-!p3@BCL11A!1.70!49.59!BCL11A;;chr15:80733570..80733659,+!p2@ARNT2!1.67!45.51!ARNT2;;chr3:181429704..181429722,+!p1@SOX2!1.67!45.44!SOX2;;chr21:34442540..34442560,+!p2@OLIG1!1.64!42.67!OLIG1;;chr2:2334997..2335053,-!p1@MYT1L!1.63!41.22!MYT1L;;chr18:53070846..53070902,-!p6@TCF4!1.61!39.90!TCF4;;chr12:26277817..26277863,-!p2@BHLHE41!1.59!50.83!BHLHE41;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.59!37.62!POU3F3;;chr22:41763452..41763466,+!p2@TEF!1.59!37.55!TEF;;chr8:145560371..145560449,-!p1@SCRT1!1.58!37.34!SCRT1;;chr2:145277882..145277967,-!p3@ZEB2!1.55!58.85!ZEB2;;chrX:25034067..25034088,-!p1@ARX!1.54!33.47!ARX;;chr15:80696703..80696754,+!p1@ARNT2!1.52!42.81!ARNT2;;chr11:125034640..125034655,+!p1@PKNOX2!1.52!32.02!PKNOX2;;chr5:88179017..88179046,-!p2@MEF2C!1.51!120.26!MEF2C;;chr16:1031762..1031781,+!p1@SOX8!1.51!31.60!SOX8;;chr10:134599649..134599653,-!p1@NKX6-2!1.50!30.71!NKX6-2;;chr14:29236269..29236285,+!p3@FOXG1!1.50!30.50!FOXG1;;chr12:54785074..54785122,-!p2@ZNF385A!1.48!44.61!ZNF385A;;chr2:166326200..166326216,+!p1@CSRNP3!1.48!41.84!CSRNP3;;chr12:54779511..54779577,-!p5@ZNF385A!1.47!28.63!ZNF385A;;chr12:106976774..106976788,+!p1@RFX4!1.47!28.35!RFX4;;chr11:113930425..113930471,+!p1@ZBTB16!1.46!39.42!ZBTB16;;chr19:57352109..57352153,-!p2@ZIM2!1.45!27.46!ZIM2;;chr2:95963120..95963136,+!p2@KCNIP3!1.44!26.28!KCNIP3;;chr14:29234581..29234601,+!p2@FOXG1!1.42!25.03!FOXG1;;chr8:145560111..145560165,-!p2@SCRT1!1.42!25.03!SCRT1;;chr2:162272889..162272915,+!p2@TBR1!1.41!24.69!TBR1;;chr11:8102846..8102892,+!p1@TUB!1.40!33.54!TUB;;chr3:181429741..181429767,+!p2@SOX2!1.40!24.34!SOX2;;chr4:57522166..57522260,-!p2@HOPX!1.39!27.18!HOPX;;chr17:7492684..7492778,-!p2@SOX15!1.38!47.44!SOX15;;chr11:125034605..125034636,+!p2@PKNOX2!1.36!21.85!PKNOX2;;chr1:151032860..151032918,+!p1@MLLT11!1.33!236.93!MLLT11;;chr9:126774018..126774055,+!p1@LHX2!1.33!20.61!LHX2;;chr14:33403881..33403924,+!p1@NPAS3!1.33!20.54!NPAS3;;chr19:13135566..13135577,+!p9@NFIX!1.33!20.33!NFIX;;chr1:2461692..2461710,-!p1@HES5!1.33!20.19!HES5;;chr12:106976678..106976708,+!p2@RFX4!1.31!19.50!RFX4;;chr19:38720294..38720348,-!p1@DPF1!1.30!23.58!DPF1;;chr10:48355030..48355090,+!p1@ZNF488!1.29!24.00!ZNF488;;chr2:162273241..162273253,+!p4@TBR1!1.29!18.67!TBR1;;chr19:46801639..46801699,+!p1@HIF3A!1.29!18.53!HIF3A;;chr19:13135731..13135787,+!p10@NFIX!1.28!18.26!NFIX;;chr8:53322304..53322340,-!p1@ST18!1.27!17.57!ST18;;chr17:38256822..38256851,-!p1@NR1D1!1.26!133.75!NR1D1;;chr6:15401104..15401166,+!p5@JARID2!1.26!17.08!JARID2;;chr2:162272716..162272753,+!p3@TBR1!1.25!16.81!TBR1;;chr10:64133862..64133884,+!p4@ZNF365!1.25!16.67!ZNF365;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.22!15.49!SMARCE1;;chr2:60780607..60780624,-!p2@BCL11A!1.21!46.20!BCL11A;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.21!15.35!POU3F3;;chrY:21906594..21906622,-!p1@KDM5D!1.21!15.08!KDM5D;;chr1:214161272..214161322,+!p1@PROX1!1.20!20.82!PROX1;;chr5:92920256..92920282,+!p7@NR2F1!1.20!18.19!NR2F1;;chr6:19837592..19837621,+!p1@ID4!1.19!86.93!ID4;;chr19:13134772..13134822,+!p2@NFIX!1.19!21.51!NFIX;;chr2:180726291..180726311,-!p1@ZNF385B!1.19!14.66!ZNF385B;;chr2:162273196..162273210,+!p5@TBR1!1.19!14.52!TBR1;;chr15:31631789..31631811,+!p13@KLF13!1.19!14.32!KLF13;;chr12:26277956..26277980,-!p1@BHLHE41!1.18!50.14!BHLHE41;;chr15:31658288..31658338,+!p4@KLF13!1.18!14.04!KLF13;;chr2:180726331..180726344,-!p5@ZNF385B!1.18!14.04!ZNF385B;;chr9:77112225..77112238,+!p2@RORB!1.18!13.97!RORB;;chr20:62680984..62680999,-!p1@SOX18!1.15!17.50!SOX18;;chr17:70117153..70117174,+!p1@SOX9!1.14!132.16!SOX9;;chr10:119302232..119302265,+!p1@EMX2!1.14!12.66!EMX2;;chr1:151032922..151032951,+!p2@MLLT11!1.13!20.82!MLLT11;;chr19:46800289..46800327,+!p2@HIF3A!1.13!12.59!HIF3A;;chr2:166428839..166428859,+!p2@CSRNP3!1.13!12.45!CSRNP3;;chrX:118739835..118739862,-!p1@NKRF!1.12!13.28!NKRF;;chr19:58545454..58545498,+!p1@ZSCAN1!1.12!12.24!ZSCAN1;;chr2:162273254..162273267,+!p6@TBR1!1.12!12.10!TBR1;;chr20:42544782..42544828,+!p4@TOX2!1.11!11.83!TOX2;;chr19:30863271..30863338,+!p1@ZNF536!1.11!11.83!ZNF536;;chr19:49140609..49140643,-!p1@DBP!1.10!65.49!DBP;;chr8:22550982..22550999,-!p1@EGR3!1.10!32.85!EGR3;;chr7:73038839..73038862,-!p1@MLXIPL!1.10!11.55!MLXIPL;;chr17:38256877..38256900,-!p2@NR1D1!1.09!36.24!NR1D1;;chr19:57183114..57183145,-!p1@ZNF835!1.09!12.79!ZNF835;;chr11:125034586..125034604,+!p3@PKNOX2!1.09!11.41!PKNOX2;;chr12:103351444..103351461,+!p1@ASCL1!1.08!11.00!ASCL1;;chr10:64133910..64133925,+!p5@ZNF365!1.08!10.93!ZNF365;;chr19:4065848..4065909,-!p4@ZBTB7A!1.07!21.30!ZBTB7A;;chr19:38085768..38085821,+!p1@ZNF540!1.07!16.18!ZNF540;;chr5:92919375..92919438,+!p6@NR2F1!1.07!11.69!NR2F1;;chr17:4890919..4890985,-!p1@CAMTA2!1.06!98.20!CAMTA2;;chr2:239148671..239148686,-!p1@HES6!1.06!38.87!HES6;;chr3:24536253..24536328,-!p1@THRB!1.06!19.85!THRB;;chr11:113930291..113930339,+!p2@ZBTB16!1.06!17.22!ZBTB16;;chr6:143266185..143266238,-!p2@HIVEP2!1.06!14.38!HIVEP2;;chr11:8102819..8102845,+!p3@TUB!1.06!13.14!TUB;;chr12:54785054..54785072,-!p4@ZNF385A!1.06!11.76!ZNF385A;;chr19:3359158..3359209,+!p5@NFIC!1.06!10.58!NFIC;;chr7:31380292..31380351,-!p1@NEUROD6!1.06!10.44!NEUROD6;;chr7:63505799..63505904,+!p1@ZNF727!1.06!10.37!ZNF727;;chr3:126076242..126076257,-!p1@KLF15!1.05!12.79!KLF15;;chr2:162273101..162273118,+!p7@TBR1!1.05!10.10!TBR1;;chr20:42574529..42574563,+!p3@TOX2!1.05!10.10!TOX2;;chrX:106959661..106959763,-!p4@TSC22D3!1.04!29.81!TSC22D3;;chrX:118739782..118739829,-!p2@NKRF!1.04!10.03!NKRF;;chr1:244214577..244214593,+!p1@ZNF238!1.04!9.96!ZNF238;;chr22:41777927..41777971,+!p1@TEF!1.03!82.85!TEF;;chr14:21994337..21994442,-!p1@SALL2!1.03!27.18!SALL2;;chr3:141105705..141105770,+!p4@ZBTB38!1.03!11.90!ZBTB38;;chr4:57522598..57522664,-!p3@HOPX!1.03!9.61!HOPX;;chr19:7580549..7580596,+!p3@ZNF358!1.03!9.61!ZNF358;;chr13:100634031..100634045,+!p1@ZIC2!1.02!9.54!ZIC2;;chr2:42721205..42721307,+!p4@MTA3!1.02!9.47!MTA3;;chr1:8585945..8586056,-!p3@RERE!1.01!31.19!RERE;;chr19:3359257..3359362,+!p3@NFIC!1.01!28.56!NFIC;;chr2:2330039..2330072,-!p6@MYT1L!1.01!9.27!MYT1L;;chr9:126774058..126774081,+!p3@LHX2!1.01!9.13!LHX2;;chr11:31832658..31832681,-!p1@PAX6!1.01!9.13!PAX6;;chr16:51185318..51185348,-!p2@SALL1!1.00!9.06!SALL1;;chr15:80696410..80696477,+!p6@ARNT2!1.00!8.92!ARNT2;;chr1:217263131..217263207,-!p4@ESRRG!1.00!8.92!ESRRG;;chr7:150974206..150974255,-!p1@SMARCD3!0.99!56.29!SMARCD3;;chr2:74229812..74229867,+!p1@TET3!0.99!22.61!TET3;;chr6:1312325..1312340,+!p1@FOXQ1!0.99!14.45!FOXQ1;;chr17:38465413..38465438,+!p5@RARA!0.99!14.25!RARA;;chr8:22550530..22550609,-!p2@EGR3!0.99!8.85!EGR3;;chr11:113930401..113930422,+!p3@ZBTB16!0.99!8.85!ZBTB16;;chr11:66188503..66188511,+!p1@NPAS4!0.99!8.78!NPAS4;;chr21:34442584..34442587,+!p3@OLIG1!0.99!8.71!OLIG1;;chr13:45010939..45011033,-!p1@TSC22D1!0.98!578.43!TSC22D1;;chr8:60031682..60031710,-!p2@TOX!0.98!14.04!TOX;;chr2:73520667..73520683,-!p1@EGR4!0.98!8.64!EGR4;;chr17:38219209..38219230,+!p1@THRA!0.97!111.62!THRA;;chr3:33482052..33482116,-!p2@UBP1!0.97!12.93!UBP1;;chr10:64134045..64134083,+!p3@ZNF365!0.97!8.30!ZNF365;;chr19:47523058..47523114,+!p1@NPAS1!0.97!8.30!NPAS1;;chr9:124991204..124991246,-!p1@LHX6!0.97!8.30!LHX6;;chr2:200323414..200323455,-!p1@SATB2!0.96!17.64!SATB2;;chr15:31631813..31631825,+!p17@KLF13!0.96!8.16!KLF13;;chr16:85932760..85932775,+!p1@IRF8!0.96!8.16!IRF8;;chr2:166428861..166428883,+!p3@CSRNP3!0.96!8.09!CSRNP3;;chr2:2328725..2328739,-!p5@MYT1L!0.96!8.02!MYT1L;;chr16:51185172..51185197,-!p1@SALL1!0.96!8.02!SALL1;;chr17:38219143..38219154,+!p2@THRA!0.95!28.84!THRA;;chr15:31618903..31618962,+!p3@KLF13!0.95!22.55!KLF13;;chr1:151032739..151032748,+!p6@MLLT11!0.95!9.89!MLLT11;;chr14:33408072..33408114,+!p2@NPAS3!0.95!9.34!NPAS3;;chr2:172949484..172949522,+!p1@DLX1!0.95!7.88!DLX1;;chrY:21906761..21906810,-!p2@KDM5D!0.95!7.81!KDM5D;;chr2:145275982..145276003,-!p7@ZEB2!0.94!7.75!ZEB2;;chr11:47400078..47400106,-!p1@SPI1!0.94!7.75!SPI1;;chr5:138609489..138609542,+!p8@MATR3!0.94!7.75!MATR3;;chr3:21792682..21792720,-!p1@ZNF385D!0.94!7.68!ZNF385D;;chr5:88179230..88179270,-!p4@MEF2C!0.93!15.01!MEF2C;;chr11:8040739..8040815,+!p4@TUB!0.93!7.61!TUB;;chr12:103352277..103352324,+!p2@ASCL1!0.93!7.54!ASCL1;;chr4:149365827..149365870,-!p5@NR3C2!0.93!7.54!NR3C2;;chr3:52001396..52001425,-!p4@PCBP4!0.92!13.21!PCBP4;;chr12:26277929..26277955,-!p3@BHLHE41!0.92!10.65!BHLHE41;;chr6:126112039..126112062,+!p8@NCOA7!0.92!8.85!NCOA7;;chr2:2335070..2335098,-!p4@MYT1L!0.92!7.40!MYT1L;;chr18:53070913..53070933,-!p16@TCF4!0.92!7.40!TCF4;;chr2:73144617..73144654,+!p1@EMX1!0.92!7.26!EMX1;;chr14:75894391..75894435,+!p2@JDP2!0.91!8.30!JDP2;;chr9:126773880..126773895,+!p2@LHX2!0.91!7.12!LHX2;;chrX:82763292..82763317,+!p1@POU3F4!0.91!7.12!POU3F4;;chr15:80696666..80696700,+!p4@ARNT2!0.91!7.05!ARNT2;;chr2:180726254..18072627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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002021;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520pole%252c%2520adult%252c%2520pool1.CNhs10643.10036-101E9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520pole%252c%2520adult%252c%2520pool1.CNhs10643.10036-101E9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520pole%252c%2520adult%252c%2520pool1.CNhs10643.10036-101E9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520pole%252c%2520adult%252c%2520pool1.CNhs10643.10036-101E9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520pole%252c%2520adult%252c%2520pool1.CNhs10643.10036-101E9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10036-101E9
 |is_a=EFO:0002091;;FF:0010036
 |is_obsolete=
+|library_id=CNhs10643
+|library_id_phase_based=2:CNhs10643
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10036
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10036
 |name=occipital pole, adult, pool1
 |namespace=FANTOM5
@@ Line 45: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10643,LSID658,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=101
 |rna_catalog_number=Cat:636570
@@ Line 57: / Line 76: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=101E9
+|rna_tube_id=1.01E+11
 |rna_weight_ug=50
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 81: / Line 101: @@
 |top_motifs=REST:4.79330172422;NHLH1,2:4.40217487638;EGR1..3:4.24709597376;AHR_ARNT_ARNT2:3.81312078124;TFAP2B:3.72374310131;ZFP161:3.7153058035;MTF1:3.68628939385;MTE{core}:3.67627363783;MYFfamily:3.6546355162;MED-1{core}:3.64715009147;PAX5:3.5624756072;ZBTB6:3.55361122272;HIC1:3.35427403297;PRRX1,2:3.30525209631;ATF2:3.1586385036;GTF2I:3.04483911264;RFX1:2.86499821593;SMAD1..7,9:2.80351786986;RREB1:2.75881231068;BREu{core}:2.70586333466;MZF1:2.65929981863;PATZ1:2.64758905736;CUX2:2.49194420254;LMO2:2.47578617152;JUN:2.47007770349;SOX5:2.37453487158;EBF1:2.3234231706;ESRRA:2.32109590914;MAZ:2.26433754753;SOX{8,9,10}:2.23314221655;PRDM1:2.23004559895;FOXM1:2.19911638312;GCM1,2:2.17573128001;TFDP1:2.15034591708;SOX2:2.03242877479;POU6F1:1.98439991211;RORA:1.94980081509;NFIX:1.89138643076;GFI1B:1.88730709373;NANOG:1.88270407056;DBP:1.8779125667;GTF2A1,2:1.86971573067;TGIF1:1.8188467734;OCT4_SOX2{dimer}:1.80894124815;NKX2-3_NKX2-5:1.76356866858;TFAP2{A,C}:1.76165848373;SOX17:1.755636331;ZNF238:1.7303088575;LEF1_TCF7_TCF7L1,2:1.69432376202;MAFB:1.66328855478;POU5F1:1.66316010883;ZNF423:1.64182229128;MYOD1:1.60624936497;PAX6:1.60434139916;FOXQ1:1.52822188603;NRF1:1.52142406739;NKX3-2:1.50428428861;EP300:1.49456041369;RFX2..5_RFXANK_RFXAP:1.47108619494;SP1:1.46033427854;NFIL3:1.40458640849;XBP1:1.22749565891;HOXA9_MEIS1:1.20732873973;KLF4:1.14440771639;ZEB1:1.13960812228;HAND1,2:1.13280550678;RBPJ:1.06299991613;HMGA1,2:1.04685951106;SREBF1,2:1.04371567251;FOX{F1,F2,J1}:0.961462005528;ARID5B:0.959112298965;MEF2{A,B,C,D}:0.893324093047;HOX{A4,D4}:0.86136060856;T:0.841725105608;HMX1:0.840448582267;XCPE1{core}:0.835951302952;ZNF143:0.828899078947;bHLH_family:0.770156442459;POU3F1..4:0.71309305975;TLX1..3_NFIC{dimer}:0.689245338701;ADNP_IRX_SIX_ZHX:0.680357962546;CDC5L:0.65414323073;CREB1:0.628608554313;CRX:0.619451830315;NR5A1,2:0.61171786296;SPZ1:0.580536564865;GATA4:0.552279117287;AR:0.509343472323;ZIC1..3:0.471092732225;GZF1:0.466677831292;YY1:0.423931232508;FOX{D1,D2}:0.419168824059;TBX4,5:0.37638577898;VSX1,2:0.361877585909;STAT1,3:0.348094323648;ZNF148:0.341024974284;ATF4:0.340210778088;TLX2:0.286169636279;ATF5_CREB3:0.245228710819;TFAP4:0.238961389495;FOXN1:0.193038921697;GFI1:0.135383950823;NFY{A,B,C}:0.112279279417;NFE2L2:0.0948824685263;PBX1:0.0453510128906;NANOG{mouse}:0.0447454938369;PAX2:0.0303278409457;MYBL2:0.014423933409;HBP1_HMGB_SSRP1_UBTF:-0.00465794828608;HOX{A6,A7,B6,B7}:-0.0211042721043;SNAI1..3:-0.0430524490652;IKZF1:-0.0432753333709;ESR1:-0.0479726397527;ZNF384:-0.0973644184526;NKX6-1,2:-0.146897778103;ONECUT1,2:-0.154019151206;NR3C1:-0.160938473407;TFCP2:-0.164292830766;FOXP3:-0.164858207982;PAX1,9:-0.167720664334;ALX1:-0.180907774138;NFE2L1:-0.183411440405;NR1H4:-0.197266708269;FOXL1:-0.294119854932;LHX3,4:-0.317303919172;NFE2:-0.327729995118;PAX3,7:-0.405685616157;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.417859290487;IRF7:-0.41952436695;BPTF:-0.442726876658;FOXA2:-0.461045743033;IKZF2:-0.484245718948;FOXP1:-0.498201119175;GLI1..3:-0.508873054379;NFATC1..3:-0.519803491551;PPARG:-0.534600014046;RXR{A,B,G}:-0.545079616283;GATA6:-0.563488985975;SPI1:-0.584627056104;TAL1_TCF{3,4,12}:-0.632321900482;POU1F1:-0.648434040601;FOSL2:-0.651221312912;TOPORS:-0.672595545647;STAT2,4,6:-0.679063280013;HNF1A:-0.681221125242;CEBPA,B_DDIT3:-0.68180755471;TP53:-0.697361774119;PDX1:-0.715738790148;ETS1,2:-0.738047302748;UFEwm:-0.740216194694;ATF6:-0.77137256272;BACH2:-0.780018370936;IRF1,2:-0.803401711181;FOX{I1,J2}:-0.810246839966;SPIB:-0.820838047;FOS_FOS{B,L1}_JUN{B,D}:-0.84266724856;FOXO1,3,4:-0.863839830173;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.886822168594;PAX8:-0.896369500342;TEF:-0.898511011488;HNF4A_NR2F1,2:-0.921690271995;TEAD1:-0.998881050996;RUNX1..3:-1.01793382027;HLF:-1.07479808189;DMAP1_NCOR{1,2}_SMARC:-1.08646303956;ELK1,4_GABP{A,B1}:-1.11837391389;NFKB1_REL_RELA:-1.12060446488;TBP:-1.14050488946;EN1,2:-1.17961535345;HES1:-1.19525661897;HIF1A:-1.19789813921;SRF:-1.20583080875;HSF1,2:-1.21395312081;PAX4:-1.22119259111;RXRA_VDR{dimer}:-1.2775273798;E2F1..5:-1.2809217393;FOXD3:-1.32424333839;STAT5{A,B}:-1.38113407508;ALX4:-1.39762848053;POU2F1..3:-1.45051280273;NKX2-2,8:-1.46796659188;MYB:-1.66927233252;ELF1,2,4:-1.86053711814;HOX{A5,B5}:-2.12272873033;PITX1..3:-2.40039175207;NKX2-1,4:-2.43401731361;NKX3-1:-2.47565738528;EVI1:-2.53646321578;ZBTB16:-2.7157160109;NR6A1:-2.73024818987;CDX1,2,4:-2.88922669902;AIRE:-3.06657392686
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10036-101E9;search_select_hide=table117:FF:10036-101E9
 }}

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FF:10036-101E9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:16, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0