FF:11862-125A8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004744 | |||
|accession_numbers=CAGE;DRX008156;DRR009028;DRZ000453;DRZ001838;DRZ011803;DRZ013188 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | ||
Line 7: | Line 9: | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.72!5200.34!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.97!937.66!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.68!473.10!SPI1;;chr10:64576105..64576133,-!p1@EGR2!2.64!856.51!EGR2;;chr10:35484053..35484076,+!p1@CREM!2.62!985.90!CREM;;chr12:54778471..54778528,-!p1@ZNF385A!2.47!295.97!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.31!203.26!TFEC;;chr20:39317868..39317884,-!p1@MAFB!2.26!2021.55!MAFB;;chr11:47399947..47399961,-!p3@SPI1!2.19!152.26!SPI1;;chr11:64764435..64764449,-!p1@BATF2!2.14!184.42!BATF2;;chr6:106534192..106534224,+!p1@PRDM1!2.10!339.94!PRDM1;;chr6:36355431..36355466,-!p1@ETV7!2.06!114.57!ETV7;;chr7:128577972..128578047,+!p1@IRF5!2.00!153.01!IRF5;;chr21:36260295..36260310,-!p3@RUNX1!1.99!152.26!RUNX1;;chr5:131826457..131826514,-!p1@IRF1!1.98!3454.17!IRF1;;chr11:47400062..47400077,-!p2@SPI1!1.98!95.22!SPI1;;chr2:70142232..70142251,+!p1@MXD1!1.94!464.31!MXD1;;chr10:35484090..35484104,+!p6@CREM!1.94!85.42!CREM;;chr1:221052776..221052799,+!p1@HLX!1.93!147.99!HLX;;chr17:45810594..45810608,+!p1@TBX21!1.93!83.16!TBX21;;chr11:47399996..47400014,-!p4@SPI1!1.91!79.65!SPI1;;chr11:615942..615957,-!p1@IRF7!1.86!643.70!IRF7;;chr1:25256756..25256774,-!p1@RUNX3!1.84!125.62!RUNX3;;chr21:34442439..34442455,+!p1@OLIG1!1.84!68.59!OLIG1;;chr1:158985493..158985535,+!p4@IFI16!1.83!99.24!IFI16;;chr19:45971246..45971265,+!p1@FOSB!1.81!1118.56!FOSB;;chr6:106534230..106534254,+!p2@PRDM1!1.80!152.01!PRDM1;;chr1:221052733..221052749,+!p2@HLX!1.80!79.90!HLX;;chr10:64018918..64018936,+!p2@ZNF365!1.80!62.81!ZNF365;;chr16:31885093..31885165,+!p1@ZNF267!1.79!875.60!ZNF267;;chr10:31288398..31288455,-!p2@ZNF438!1.79!69.60!ZNF438;;chr2:68592394..68592405,+!p2@PLEK!1.79!61.30!PLEK;;chr11:65430554..65430579,-!p3@RELA!1.76!139.44!RELA;;chr3:12329397..12329433,+!p2@PPARG!1.74!118.59!PPARG;;chr2:231084639..231084654,-!p2@SP110!1.73!84.92!SP110;;chr2:145277640..145277771,-!p1@ZEB2!1.72!655.01!ZEB2;;chr2:157189180..157189290,-!p1@NR4A2!1.72!253.26!NR4A2;;chr22:38597987..38598021,+!p2@MAFF!1.71!290.44!MAFF;;chr19:50432132..50432217,+!p2@ATF5!1.71!59.29!ATF5;;chr11:47400032..47400043,-!p5@SPI1!1.69!47.49!SPI1;;chr2:145275162..145275202,-!p2@ZEB2!1.68!262.05!ZEB2;;chr12:72056749..72056767,+!p6@THAP2!1.68!52.01!THAP2;;chr19:33793430..33793447,-!p1@CEBPA!1.67!186.43!CEBPA;;chr12:72056800..72056834,+!p1@THAP2!1.67!60.30!THAP2;;chr21:30671690..30671762,+!p2@BACH1!1.66!146.98!BACH1;;chr2:97202480..97202499,+!p1@ARID5A!1.65!422.35!ARID5A;;chr8:22550982..22550999,-!p1@EGR3!1.65!120.35!EGR3;;chr9:102584159..102584174,+!p2@NR4A3!1.64!74.62!NR4A3;;chr16:79634624..79634642,-!p1@MAF!1.62!153.26!MAF;;chr11:65430535..65430549,-!p4@RELA!1.62!46.73!RELA;;chr14:75988831..75988847,+!p2@BATF!1.61!39.70!BATF;;chr12:54778351..54778378,-!p6@ZNF385A!1.59!37.69!ZNF385A;;chr1:212782094..212782109,+!p1@ATF3!1.58!959.77!ATF3;;chr14:75988771..75988826,+!p1@BATF!1.58!49.24!BATF;;chr10:31288370..31288393,-!p3@ZNF438!1.58!37.18!ZNF438;;chr21:30671235..30671253,+!p1@BACH1!1.57!433.91!BACH1;;chr1:158979872..158979898,+!p3@IFI16!1.57!108.04!IFI16;;chr12:72056773..72056796,+!p3@THAP2!1.57!46.73!THAP2;;chr2:191885737..191885750,-!p4@STAT1!1.57!36.43!STAT1;;chr3:12330560..12330579,+!p1@PPARG!1.56!39.95!PPARG;;chr10:35484804..35484902,+!p2@CREM!1.54!124.37!CREM;;chr6:15246200..15246214,+!p2@JARID2!1.54!91.20!JARID2;;chr17:38497662..38497713,+!p4@RARA!1.52!37.18!RARA;;chr2:231090471..231090504,+!p2@SP140!1.52!32.16!SP140;;chr21:36421535..36421610,-!p2@RUNX1!1.49!103.01!RUNX1;;chr9:110252035..110252057,-!p1@KLF4!1.48!447.73!KLF4;;chr11:615570..615721,-!p2@IRF7!1.48!56.78!IRF7;;chr4:185395590..185395627,-!p3@IRF2!1.48!35.93!IRF2;;chr9:102584262..102584276,+!p1@NR4A3!1.47!62.56!NR4A3;;chrX:129244454..129244488,-!p1@ELF4!1.46!193.21!ELF4;;chr13:41593425..41593480,-!p1@ELF1!1.46!170.35!ELF1;;chr12:48298765..48298783,-!p2@VDR!1.45!56.03!VDR;;chr19:36391434..36391450,-!p1@NFKBID!1.44!51.76!NFKBID;;chr3:39195139..39195150,-!p3@CSRNP1!1.44!33.67!CSRNP1;;chr11:65430038..65430053,-!p12@RELA!1.44!26.38!RELA;;chr6:391743..391759,+!p1@IRF4!1.44!26.38!IRF4;;chr21:36260343..36260402,-!p6@RUNX1!1.43!41.20!RUNX1;;chr19:45251395..45251432,+!p8@BCL3!1.43!25.88!BCL3;;chr6:106535598..106535637,+!p7@PRDM1!1.43!25.63!PRDM1;;chr6:144385698..144385742,-!p2@PLAGL1!1.41!29.65!PLAGL1;;chr9:102584128..102584144,+!p3@NR4A3!1.40!44.97!NR4A3;;chr20:48807351..48807384,+!p1@CEBPB!1.39!2320.78!CEBPB;;chr4:185395633..185395651,-!p2@IRF2!1.39!37.69!IRF2;;chr11:47400045..47400060,-!p6@SPI1!1.38!23.11!SPI1;;chr12:11802753..11802834,+!p2@ETV6!1.37!107.53!ETV6;;chr8:116681123..116681143,-!p4@TRPS1!1.36!41.46!TRPS1;;chr2:28618532..28618610,+!p4@FOSL2!1.36!37.44!FOSL2;;chr14:35872453..35872485,-!p2@NFKBIA!1.34!50.75!NFKBIA;;chr2:70167296..70167306,+!p3@MXD1!1.34!31.91!MXD1;;chr10:51572408..51572454,+!p3@NCOA4!1.33!115.83!NCOA4;;chr2:145277882..145277967,-!p3@ZEB2!1.33!35.17!ZEB2;;chr21:30672433..30672464,+!p6@BACH1!1.33!20.60!BACH1;;chr4:106068026..106068084,+!p1@TET2!1.31!169.34!TET2;;chr11:65429891..65429915,-!p7@RELA!1.31!19.60!RELA;;chr11:47399920..47399931,-!p7@SPI1!1.31!19.35!SPI1;;chr3:187463179..187463201,-!p2@BCL6!1.30!75.88!BCL6;;chr6:126240380..126240430,+!p2@NCOA7!1.30!48.74!NCOA7;;chr9:110250697..110250738,-!p2@KLF4!1.30!22.36!KLF4;;chr7:50344289..50344323,+!p1@IKZF1!1.29!18.59!IKZF1;;chrX:153305787..153305807,-!p3@MECP2!1.29!18.59!MECP2;;chr21:36260325..36260341,-!p14@RUNX1!1.29!18.34!RUNX1;;chr3:39195037..39195069,-!p2@CSRNP1!1.28!110.05!CSRNP1;;chr18:3449720..3449749,+!p2@TGIF1!1.28!37.94!TGIF1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.28!18.09!ZBED1;;chr12:52445218..52445237,+!p1@NR4A1!1.26!213.31!NR4A1;;chr19:45250948..45250998,+!p3@BCL3!1.26!43.47!BCL3;;chr16:79634595..79634620,-!p2@MAF!1.26!31.15!MAF;;chr9:129567282..129567353,+!p1@ZBTB43!1.25!216.33!ZBTB43;;chr1:221052840..221052875,+!p4@HLX!1.25!19.85!HLX;;chr14:75745523..75745537,+!p1@FOS!1.24!1889.14!FOS;;chr21:36260980..36261011,-!p1@RUNX1!1.24!455.77!RUNX1;;chr1:158979792..158979814,+!p2@IFI16!1.24!153.76!IFI16;;chr2:61108695..61108753,+!p1@REL!1.24!111.55!REL;;chr10:104155480..104155534,+!p2@NFKB2!1.24!103.26!NFKB2;;chr18:3449586..3449617,+!p8@TGIF1!1.24!26.38!TGIF1;;chr1:25256439..25256476,-!p3@RUNX3!1.24!16.33!RUNX3;;chr2:70314240..70314256,+!p4@PCBP1!1.23!33.16!PCBP1;;chr2:145271342..145271377,-!p5@ZEB2!1.23!15.83!ZEB2;;chr3:187455680..187455700,-!p4@BCL6!1.23!15.83!BCL6;;chr10:51572339..51572376,+!p4@NCOA4!1.22!35.17!NCOA4;;chr12:48298785..48298828,-!p1@VDR!1.21!80.40!VDR;;chr1:221053049..221053075,+!p3@HLX!1.21!26.63!HLX;;chr20:48809000..48809053,+!p12@CEBPB!1.21!20.35!CEBPB;;chr18:3449618..3449634,+!p13@TGIF1!1.21!18.84!TGIF1;;chr2:231090433..231090469,+!p1@SP140!1.21!15.33!SP140;;chr3:187455486..187455504,-!p6@BCL6!1.21!15.33!BCL6;;chrX:129244430..129244442,-!p5@ELF4!1.21!15.33!ELF4;;chr19:54058073..54058088,+!p1@ZNF331!1.21!15.07!ZNF331;;chr22:38598086..38598105,+!p1@MAFF!1.20!156.28!MAFF;;chr6:126240463..126240489,+!p6@NCOA7!1.20!16.58!NCOA7;;chr22:38598057..38598071,+!p3@MAFF!1.19!33.42!MAFF;;chr14:35873947..35873965,-!p1@NFKBIA!1.18!875.85!NFKBIA;;chr6:44233252..44233296,-!p1@NFKBIE!1.18!137.68!NFKBIE;;chr7:28725740..28725778,+!p1@CREB5!1.18!124.87!CREB5;;chr10:3827371..3827386,-!p2@KLF6!1.18!117.33!KLF6;;chr1:221052994..221053008,+!p6@HLX!1.18!16.58!HLX;;chr1:212738742..212738755,+!p2@ATF3!1.18!14.07!ATF3;;chr17:38497715..38497734,+!p8@RARA!1.18!14.07!RARA;;chr20:48599506..48599526,+!p1@SNAI1!1.17!87.18!SNAI1;;chr16:3285119..3285133,-!p2@ZNF200!1.17!27.64!ZNF200;;chr21:30672734..30672748,+!p11@BACH1!1.17!13.82!BACH1;;chr2:28615716..28615733,+!p1@FOSL2!1.16!635.16!FOSL2;;chr2:231084659..231084721,-!p1@SP110!1.16!311.05!SP110;;chr16:3285144..3285191,-!p1@ZNF200!1.16!66.08!ZNF200;;chr7:149470641..149470694,-!p1@ZNF467!1.16!60.05!ZNF467;;chr19:45252008..45252024,+!p2@BCL3!1.16!44.22!BCL3;;chr10:64575812..64575824,-!p4@EGR2!1.16!13.57!EGR2;;chr1:158979922..158979933,+!p13@IFI16!1.16!13.32!IFI16;;chr4:103422499..103422632,+!p1@NFKB1!1.15!273.11!NFKB1;;chr8:116681150..116681164,-!p5@TRPS1!1.15!25.63!TRPS1;;chr4:81118647..81118666,+!p1@PRDM8!1.15!17.34!PRDM8;;chr17:38474489..38474548,+!p1@RARA!1.14!400.24!RARA;;chr8:116681194..116681214,-!p1@TRPS1!1.14!118.84!TRPS1;;chr3:39195075..39195088,-!p1@CSRNP1!1.14!79.14!CSRNP1;;chr14:35872962..35873025,-!p3@NFKBIA!1.14!32.16!NFKBIA;;chr18:3449527..3449582,+!p6@TGIF1!1.14!24.37!TGIF1;;chr6:15246261..15246312,+!p1@JARID2!1.13!300.24!JARID2;;chr1:161736038..161736056,+!p4@ATF6!1.13!29.65!ATF6;;chr18:3448455..3448480,+!p5@TGIF1!1.13!23.11!TGIF1;;chr6:15246217..15246228,+!p3@JARID2!1.13!22.36!JARID2;;chr1:8484007..8484061,-!p13@RERE!1.13!16.08!RERE;;chr2:145275228..145275241,-!p11@ZEB2!1.13!15.33!ZEB2;;chr19:54041669..54041697,+!p2@ZNF331!1.13!12.56!ZNF331;;chr19:19496539..19496576,+!p8@GATAD2A!1.12!21.36!GATAD2A;;chr4:185395191..185395226,-!p4@IRF2!1.12!17.08!IRF2;;chr8:53373491..53373506,-!p4@ST18!1.12!12.31!ST18;;chr12:56415246..56415286,+!p2@IKZF4!1.12!12.06!IKZF4;;chr21:40177845..40177863,+!p1@ETS2!1.11!708.02!ETS2;;chr20:48807456..48807475,+!p3@CEBPB!1.11!23.11!CEBPB;;chr2:231280954..231280965,+!p2@SP100!1.11!22.11!SP100;;chr3:187455634..187455651,-!p7@BCL6!1.11!11.81!BCL6;;chr4:106066712..106066728,+!p8@TET2!1.11!11.81!TET2;;chr13:41593392..41593403,-!p7@ELF1!1.11!11.81!ELF1;;chr7:17338266..17338282,+!p1@AHR!1.10!124.12!AHR;;chr8:72756063..72756125,-!p1@MSC!1.10!23.62!MSC;;chr20:48807615..48807644,+!p6@CEBPB!1.10!19.35!CEBPB;;chr3:150126101..150126118,+!p6@TSC22D2!1.10!18.84!TSC22D2;;chr5:142782823..142782854,-!p3@NR3C1!1.10!16.58!NR3C1;;chr21:34398234..34398250,+!p1@OLIG2!1.10!11.56!OLIG2;;chr9:88969303..88969335,-!p1@ZCCHC6!1.09!105.02!ZCCHC6;;chr10:35416142..35416169,+!p3@CREM!1.09!30.40!CREM;;chr1:158979851..158979865,+!p5@IFI16!1.09!25.12!IFI16;;chr12:54785074..54785122,-!p2@ZNF385A!1.09!17.59!ZNF385A;;chr9:88969339..88969422,-!p2@ZCCHC6!1.08!87.18!ZCCHC6;;chr10:104154246..104154347,+!p3@NFKB2!1.08!67.33!NFKB2;;chr14:62162285..621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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.72!5200.34!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.97!937.66!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.68!473.10!SPI1;;chr10:64576105..64576133,-!p1@EGR2!2.64!856.51!EGR2;;chr10:35484053..35484076,+!p1@CREM!2.62!985.90!CREM;;chr12:54778471..54778528,-!p1@ZNF385A!2.47!295.97!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.31!203.26!TFEC;;chr20:39317868..39317884,-!p1@MAFB!2.26!2021.55!MAFB;;chr11:47399947..47399961,-!p3@SPI1!2.19!152.26!SPI1;;chr11:64764435..64764449,-!p1@BATF2!2.14!184.42!BATF2;;chr6:106534192..106534224,+!p1@PRDM1!2.10!339.94!PRDM1;;chr6:36355431..36355466,-!p1@ETV7!2.06!114.57!ETV7;;chr7:128577972..128578047,+!p1@IRF5!2.00!153.01!IRF5;;chr21:36260295..36260310,-!p3@RUNX1!1.99!152.26!RUNX1;;chr5:131826457..131826514,-!p1@IRF1!1.98!3454.17!IRF1;;chr11:47400062..47400077,-!p2@SPI1!1.98!95.22!SPI1;;chr2:70142232..70142251,+!p1@MXD1!1.94!464.31!MXD1;;chr10:35484090..35484104,+!p6@CREM!1.94!85.42!CREM;;chr1:221052776..221052799,+!p1@HLX!1.93!147.99!HLX;;chr17:45810594..45810608,+!p1@TBX21!1.93!83.16!TBX21;;chr11:47399996..47400014,-!p4@SPI1!1.91!79.65!SPI1;;chr11:615942..615957,-!p1@IRF7!1.86!643.70!IRF7;;chr1:25256756..25256774,-!p1@RUNX3!1.84!125.62!RUNX3;;chr21:34442439..34442455,+!p1@OLIG1!1.84!68.59!OLIG1;;chr1:158985493..158985535,+!p4@IFI16!1.83!99.24!IFI16;;chr19:45971246..45971265,+!p1@FOSB!1.81!1118.56!FOSB;;chr6:106534230..106534254,+!p2@PRDM1!1.80!152.01!PRDM1;;chr1:221052733..221052749,+!p2@HLX!1.80!79.90!HLX;;chr10:64018918..64018936,+!p2@ZNF365!1.80!62.81!ZNF365;;chr16:31885093..31885165,+!p1@ZNF267!1.79!875.60!ZNF267;;chr10:31288398..31288455,-!p2@ZNF438!1.79!69.60!ZNF438;;chr2:68592394..68592405,+!p2@PLEK!1.79!61.30!PLEK;;chr11:65430554..65430579,-!p3@RELA!1.76!139.44!RELA;;chr3:12329397..12329433,+!p2@PPARG!1.74!118.59!PPARG;;chr2:231084639..231084654,-!p2@SP110!1.73!84.92!SP110;;chr2:145277640..145277771,-!p1@ZEB2!1.72!655.01!ZEB2;;chr2:157189180..157189290,-!p1@NR4A2!1.72!253.26!NR4A2;;chr22:38597987..38598021,+!p2@MAFF!1.71!290.44!MAFF;;chr19:50432132..50432217,+!p2@ATF5!1.71!59.29!ATF5;;chr11:47400032..47400043,-!p5@SPI1!1.69!47.49!SPI1;;chr2:145275162..145275202,-!p2@ZEB2!1.68!262.05!ZEB2;;chr12:72056749..72056767,+!p6@THAP2!1.68!52.01!THAP2;;chr19:33793430..33793447,-!p1@CEBPA!1.67!186.43!CEBPA;;chr12:72056800..72056834,+!p1@THAP2!1.67!60.30!THAP2;;chr21:30671690..30671762,+!p2@BACH1!1.66!146.98!BACH1;;chr2:97202480..97202499,+!p1@ARID5A!1.65!422.35!ARID5A;;chr8:22550982..22550999,-!p1@EGR3!1.65!120.35!EGR3;;chr9:102584159..102584174,+!p2@NR4A3!1.64!74.62!NR4A3;;chr16:79634624..79634642,-!p1@MAF!1.62!153.26!MAF;;chr11:65430535..65430549,-!p4@RELA!1.62!46.73!RELA;;chr14:75988831..75988847,+!p2@BATF!1.61!39.70!BATF;;chr12:54778351..54778378,-!p6@ZNF385A!1.59!37.69!ZNF385A;;chr1:212782094..212782109,+!p1@ATF3!1.58!959.77!ATF3;;chr14:75988771..75988826,+!p1@BATF!1.58!49.24!BATF;;chr10:31288370..31288393,-!p3@ZNF438!1.58!37.18!ZNF438;;chr21:30671235..30671253,+!p1@BACH1!1.57!433.91!BACH1;;chr1:158979872..158979898,+!p3@IFI16!1.57!108.04!IFI16;;chr12:72056773..72056796,+!p3@THAP2!1.57!46.73!THAP2;;chr2:191885737..191885750,-!p4@STAT1!1.57!36.43!STAT1;;chr3:12330560..12330579,+!p1@PPARG!1.56!39.95!PPARG;;chr10:35484804..35484902,+!p2@CREM!1.54!124.37!CREM;;chr6:15246200..15246214,+!p2@JARID2!1.54!91.20!JARID2;;chr17:38497662..38497713,+!p4@RARA!1.52!37.18!RARA;;chr2:231090471..231090504,+!p2@SP140!1.52!32.16!SP140;;chr21:36421535..36421610,-!p2@RUNX1!1.49!103.01!RUNX1;;chr9:110252035..110252057,-!p1@KLF4!1.48!447.73!KLF4;;chr11:615570..615721,-!p2@IRF7!1.48!56.78!IRF7;;chr4:185395590..185395627,-!p3@IRF2!1.48!35.93!IRF2;;chr9:102584262..102584276,+!p1@NR4A3!1.47!62.56!NR4A3;;chrX:129244454..129244488,-!p1@ELF4!1.46!193.21!ELF4;;chr13:41593425..41593480,-!p1@ELF1!1.46!170.35!ELF1;;chr12:48298765..48298783,-!p2@VDR!1.45!56.03!VDR;;chr19:36391434..36391450,-!p1@NFKBID!1.44!51.76!NFKBID;;chr3:39195139..39195150,-!p3@CSRNP1!1.44!33.67!CSRNP1;;chr11:65430038..65430053,-!p12@RELA!1.44!26.38!RELA;;chr6:391743..391759,+!p1@IRF4!1.44!26.38!IRF4;;chr21:36260343..36260402,-!p6@RUNX1!1.43!41.20!RUNX1;;chr19:45251395..45251432,+!p8@BCL3!1.43!25.88!BCL3;;chr6:106535598..106535637,+!p7@PRDM1!1.43!25.63!PRDM1;;chr6:144385698..144385742,-!p2@PLAGL1!1.41!29.65!PLAGL1;;chr9:102584128..102584144,+!p3@NR4A3!1.40!44.97!NR4A3;;chr20:48807351..48807384,+!p1@CEBPB!1.39!2320.78!CEBPB;;chr4:185395633..185395651,-!p2@IRF2!1.39!37.69!IRF2;;chr11:47400045..47400060,-!p6@SPI1!1.38!23.11!SPI1;;chr12:11802753..11802834,+!p2@ETV6!1.37!107.53!ETV6;;chr8:116681123..116681143,-!p4@TRPS1!1.36!41.46!TRPS1;;chr2:28618532..28618610,+!p4@FOSL2!1.36!37.44!FOSL2;;chr14:35872453..35872485,-!p2@NFKBIA!1.34!50.75!NFKBIA;;chr2:70167296..70167306,+!p3@MXD1!1.34!31.91!MXD1;;chr10:51572408..51572454,+!p3@NCOA4!1.33!115.83!NCOA4;;chr2:145277882..145277967,-!p3@ZEB2!1.33!35.17!ZEB2;;chr21:30672433..30672464,+!p6@BACH1!1.33!20.60!BACH1;;chr4:106068026..106068084,+!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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 38: | Line 42: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000625,FF:0000631,FF:0011444,FF:11862-125A8 | |fonse_treatment_closure=EFO:0000369,FF:0000625,FF:0000631,FF:0011444,FF:11862-125A8 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor1.CNhs13467.11862-125A8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor1.CNhs13467.11862-125A8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor1.CNhs13467.11862-125A8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor1.CNhs13467.11862-125A8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor1.CNhs13467.11862-125A8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11862-125A8 | |id=FF:11862-125A8 | ||
|is_a=EFO:0002091;;FF:0011444 | |is_a=EFO:0002091;;FF:0011444 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13467 | |||
|library_id_phase_based=2:CNhs13467 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11862 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11862 | |||
|name=CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1 | |name=CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1 | ||
|namespace= | |namespace= | ||
Line 46: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13467,LSID1024,release012,COMPLETED | |profile_hcage=CNhs13467,LSID1024,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 61: | Line 79: | ||
|rna_weight_ug=3.49095 | |rna_weight_ug=3.49095 | ||
|sample_age=69 | |sample_age=69 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 82: | Line 101: | ||
|top_motifs=STAT2,4,6:5.45297593062;STAT5{A,B}:4.62149317811;FOSL2:4.48547695172;NFE2:4.21591678191;NFE2L2:4.18187291448;IRF7:4.11582861704;BACH2:4.06153033299;IRF1,2:3.94178398762;FOS_FOS{B,L1}_JUN{B,D}:3.92615483362;CEBPA,B_DDIT3:3.87116035644;SREBF1,2:3.70632806903;STAT1,3:3.57931852275;PAX2:3.35835019254;HLF:3.33742767075;SPIB:3.1126349864;EP300:2.87988418288;SPI1:2.83265300068;ATF4:2.79397778213;ATF5_CREB3:2.6046800988;ATF6:2.6030106435;NFIL3:2.55504109993;NFE2L1:2.52968455886;FOXP3:2.50278038622;ETS1,2:2.48659197548;NANOG{mouse}:2.36020663155;DMAP1_NCOR{1,2}_SMARC:2.23670717718;CREB1:2.11608145402;ZBTB16:2.09850222636;FOXN1:2.09653199408;CDX1,2,4:2.07689092599;NR1H4:1.8955931006;RUNX1..3:1.8381749355;HIF1A:1.72828835236;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.64758557295;NFKB1_REL_RELA:1.63051990108;JUN:1.58014677565;PITX1..3:1.47292781513;HMGA1,2:1.35854833821;ELF1,2,4:1.32856726417;NR6A1:1.31292682713;PAX4:1.28427897238;HBP1_HMGB_SSRP1_UBTF:1.25782423259;HSF1,2:1.23321560652;ALX4:1.17564936601;PDX1:1.15548660097;TGIF1:1.15001225817;PAX3,7:1.05979574107;MAFB:0.971254758896;ATF2:0.914482927133;ESRRA:0.87066489268;BPTF:0.789570630813;IKZF2:0.746235833183;NFATC1..3:0.715444582034;FOXP1:0.706512223678;FOXD3:0.650059169209;RXRA_VDR{dimer}:0.627484881111;SRF:0.62586467092;HMX1:0.611700509913;XBP1:0.560632673206;HOX{A5,B5}:0.474680095625;PRDM1:0.450919900861;TLX2:0.428918764864;PAX8:0.378002669883;FOXO1,3,4:0.346576375012;TFCP2:0.230151480054;GLI1..3:0.189242470116;PPARG:0.179121872317;GATA4:0.118538521637;RXR{A,B,G}:0.0722471909329;RFX2..5_RFXANK_RFXAP:-0.0149375780741;MYB:-0.0227900297553;DBP:-0.0443018999624;HES1:-0.0611436094763;NKX6-1,2:-0.0697000973878;PAX1,9:-0.083147832648;TBP:-0.0867144851264;AHR_ARNT_ARNT2:-0.103438156999;EN1,2:-0.107848661477;EGR1..3:-0.120023980267;FOX{D1,D2}:-0.125297398182;FOXL1:-0.139031057782;IKZF1:-0.188541530017;NKX2-2,8:-0.196750872543;MEF2{A,B,C,D}:-0.217236103457;ESR1:-0.274264082355;FOXM1:-0.359759253981;ALX1:-0.431443481911;NKX3-2:-0.442518370083;NANOG:-0.500894792522;SMAD1..7,9:-0.517687407913;HOX{A6,A7,B6,B7}:-0.536775994927;T:-0.578587613205;RREB1:-0.589032396543;TAL1_TCF{3,4,12}:-0.598746698845;OCT4_SOX2{dimer}:-0.670209566724;MZF1:-0.684668181293;SPZ1:-0.689702587426;POU2F1..3:-0.716917743314;HOXA9_MEIS1:-0.807129790861;RBPJ:-0.815676350969;REST:-0.873866571419;TFAP4:-0.898681886598;NKX3-1:-0.934077604495;FOX{F1,F2,J1}:-0.957338681417;TEF:-0.970535407182;VSX1,2:-1.00312135932;NR3C1:-1.02462246947;HNF4A_NR2F1,2:-1.02642653952;ZNF384:-1.05740936792;AIRE:-1.06399326667;HNF1A:-1.10477999593;RORA:-1.13248267338;SOX2:-1.15007076415;POU5F1:-1.1517582445;MED-1{core}:-1.16577519305;MYFfamily:-1.19020749467;GZF1:-1.24530508683;TOPORS:-1.26053077817;ZNF238:-1.26625306929;PRRX1,2:-1.27404609436;PATZ1:-1.27887595265;NHLH1,2:-1.29369044394;POU6F1:-1.35819568691;CUX2:-1.36725120106;SP1:-1.36978884804;GATA6:-1.3726478664;PAX6:-1.39269034091;ZBTB6:-1.40154549138;RFX1:-1.40154571403;XCPE1{core}:-1.40513471496;FOXA2:-1.43369399798;UFEwm:-1.49926123097;MAZ:-1.50871431784;SOX5:-1.51681617619;TFAP2B:-1.53038127633;ZFP161:-1.5579454956;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.55939201815;MTE{core}:-1.56117688686;MYOD1:-1.59318316163;TEAD1:-1.60132646763;MTF1:-1.60396901205;ZEB1:-1.61445873698;SOX{8,9,10}:-1.61758688916;POU1F1:-1.64016379068;NKX2-3_NKX2-5:-1.6819063722;GTF2A1,2:-1.71909685506;NKX2-1,4:-1.71920378123;TP53:-1.75269295685;E2F1..5:-1.75539116954;TFAP2{A,C}:-1.7608280266;BREu{core}:-1.79097323352;GTF2I:-1.81467896134;GCM1,2:-1.84483975081;MYBL2:-1.85397474306;ZIC1..3:-1.88365371522;EVI1:-1.88772775348;TLX1..3_NFIC{dimer}:-1.89139419606;NFIX:-1.89577583902;SNAI1..3:-1.89946733385;ELK1,4_GABP{A,B1}:-1.93030394228;KLF4:-1.93987550307;CRX:-1.96403162113;HOX{A4,D4}:-1.98544473281;ARID5B:-2.00004470397;TFDP1:-2.00344097217;ZNF148:-2.04205964199;ADNP_IRX_SIX_ZHX:-2.05457839864;ONECUT1,2:-2.0999931741;GFI1B:-2.13845101951;HIC1:-2.20862516939;LMO2:-2.24284795743;NFY{A,B,C}:-2.24983580747;FOX{I1,J2}:-2.2672454031;TBX4,5:-2.30906890731;POU3F1..4:-2.31067848783;bHLH_family:-2.31916468992;ZNF423:-2.33519270979;EBF1:-2.363385924;HAND1,2:-2.41897852041;CDC5L:-2.54136279137;PAX5:-2.56515510662;PBX1:-2.58143990483;SOX17:-2.72698729119;AR:-2.76786029215;FOXQ1:-2.85508254385;GFI1:-2.87036007989;NRF1:-2.92457674693;NR5A1,2:-2.99624410319;YY1:-3.01574507341;LEF1_TCF7_TCF7L1,2:-3.48653484713;ZNF143:-3.54104977063;LHX3,4:-3.59610803315 | |top_motifs=STAT2,4,6:5.45297593062;STAT5{A,B}:4.62149317811;FOSL2:4.48547695172;NFE2:4.21591678191;NFE2L2:4.18187291448;IRF7:4.11582861704;BACH2:4.06153033299;IRF1,2:3.94178398762;FOS_FOS{B,L1}_JUN{B,D}:3.92615483362;CEBPA,B_DDIT3:3.87116035644;SREBF1,2:3.70632806903;STAT1,3:3.57931852275;PAX2:3.35835019254;HLF:3.33742767075;SPIB:3.1126349864;EP300:2.87988418288;SPI1:2.83265300068;ATF4:2.79397778213;ATF5_CREB3:2.6046800988;ATF6:2.6030106435;NFIL3:2.55504109993;NFE2L1:2.52968455886;FOXP3:2.50278038622;ETS1,2:2.48659197548;NANOG{mouse}:2.36020663155;DMAP1_NCOR{1,2}_SMARC:2.23670717718;CREB1:2.11608145402;ZBTB16:2.09850222636;FOXN1:2.09653199408;CDX1,2,4:2.07689092599;NR1H4:1.8955931006;RUNX1..3:1.8381749355;HIF1A:1.72828835236;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.64758557295;NFKB1_REL_RELA:1.63051990108;JUN:1.58014677565;PITX1..3:1.47292781513;HMGA1,2:1.35854833821;ELF1,2,4:1.32856726417;NR6A1:1.31292682713;PAX4:1.28427897238;HBP1_HMGB_SSRP1_UBTF:1.25782423259;HSF1,2:1.23321560652;ALX4:1.17564936601;PDX1:1.15548660097;TGIF1:1.15001225817;PAX3,7:1.05979574107;MAFB:0.971254758896;ATF2:0.914482927133;ESRRA:0.87066489268;BPTF:0.789570630813;IKZF2:0.746235833183;NFATC1..3:0.715444582034;FOXP1:0.706512223678;FOXD3:0.650059169209;RXRA_VDR{dimer}:0.627484881111;SRF:0.62586467092;HMX1:0.611700509913;XBP1:0.560632673206;HOX{A5,B5}:0.474680095625;PRDM1:0.450919900861;TLX2:0.428918764864;PAX8:0.378002669883;FOXO1,3,4:0.346576375012;TFCP2:0.230151480054;GLI1..3:0.189242470116;PPARG:0.179121872317;GATA4:0.118538521637;RXR{A,B,G}:0.0722471909329;RFX2..5_RFXANK_RFXAP:-0.0149375780741;MYB:-0.0227900297553;DBP:-0.0443018999624;HES1:-0.0611436094763;NKX6-1,2:-0.0697000973878;PAX1,9:-0.083147832648;TBP:-0.0867144851264;AHR_ARNT_ARNT2:-0.103438156999;EN1,2:-0.107848661477;EGR1..3:-0.120023980267;FOX{D1,D2}:-0.125297398182;FOXL1:-0.139031057782;IKZF1:-0.188541530017;NKX2-2,8:-0.196750872543;MEF2{A,B,C,D}:-0.217236103457;ESR1:-0.274264082355;FOXM1:-0.359759253981;ALX1:-0.431443481911;NKX3-2:-0.442518370083;NANOG:-0.500894792522;SMAD1..7,9:-0.517687407913;HOX{A6,A7,B6,B7}:-0.536775994927;T:-0.578587613205;RREB1:-0.589032396543;TAL1_TCF{3,4,12}:-0.598746698845;OCT4_SOX2{dimer}:-0.670209566724;MZF1:-0.684668181293;SPZ1:-0.689702587426;POU2F1..3:-0.716917743314;HOXA9_MEIS1:-0.807129790861;RBPJ:-0.815676350969;REST:-0.873866571419;TFAP4:-0.898681886598;NKX3-1:-0.934077604495;FOX{F1,F2,J1}:-0.957338681417;TEF:-0.970535407182;VSX1,2:-1.00312135932;NR3C1:-1.02462246947;HNF4A_NR2F1,2:-1.02642653952;ZNF384:-1.05740936792;AIRE:-1.06399326667;HNF1A:-1.10477999593;RORA:-1.13248267338;SOX2:-1.15007076415;POU5F1:-1.1517582445;MED-1{core}:-1.16577519305;MYFfamily:-1.19020749467;GZF1:-1.24530508683;TOPORS:-1.26053077817;ZNF238:-1.26625306929;PRRX1,2:-1.27404609436;PATZ1:-1.27887595265;NHLH1,2:-1.29369044394;POU6F1:-1.35819568691;CUX2:-1.36725120106;SP1:-1.36978884804;GATA6:-1.3726478664;PAX6:-1.39269034091;ZBTB6:-1.40154549138;RFX1:-1.40154571403;XCPE1{core}:-1.40513471496;FOXA2:-1.43369399798;UFEwm:-1.49926123097;MAZ:-1.50871431784;SOX5:-1.51681617619;TFAP2B:-1.53038127633;ZFP161:-1.5579454956;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.55939201815;MTE{core}:-1.56117688686;MYOD1:-1.59318316163;TEAD1:-1.60132646763;MTF1:-1.60396901205;ZEB1:-1.61445873698;SOX{8,9,10}:-1.61758688916;POU1F1:-1.64016379068;NKX2-3_NKX2-5:-1.6819063722;GTF2A1,2:-1.71909685506;NKX2-1,4:-1.71920378123;TP53:-1.75269295685;E2F1..5:-1.75539116954;TFAP2{A,C}:-1.7608280266;BREu{core}:-1.79097323352;GTF2I:-1.81467896134;GCM1,2:-1.84483975081;MYBL2:-1.85397474306;ZIC1..3:-1.88365371522;EVI1:-1.88772775348;TLX1..3_NFIC{dimer}:-1.89139419606;NFIX:-1.89577583902;SNAI1..3:-1.89946733385;ELK1,4_GABP{A,B1}:-1.93030394228;KLF4:-1.93987550307;CRX:-1.96403162113;HOX{A4,D4}:-1.98544473281;ARID5B:-2.00004470397;TFDP1:-2.00344097217;ZNF148:-2.04205964199;ADNP_IRX_SIX_ZHX:-2.05457839864;ONECUT1,2:-2.0999931741;GFI1B:-2.13845101951;HIC1:-2.20862516939;LMO2:-2.24284795743;NFY{A,B,C}:-2.24983580747;FOX{I1,J2}:-2.2672454031;TBX4,5:-2.30906890731;POU3F1..4:-2.31067848783;bHLH_family:-2.31916468992;ZNF423:-2.33519270979;EBF1:-2.363385924;HAND1,2:-2.41897852041;CDC5L:-2.54136279137;PAX5:-2.56515510662;PBX1:-2.58143990483;SOX17:-2.72698729119;AR:-2.76786029215;FOXQ1:-2.85508254385;GFI1:-2.87036007989;NRF1:-2.92457674693;NR5A1,2:-2.99624410319;YY1:-3.01574507341;LEF1_TCF7_TCF7L1,2:-3.48653484713;ZNF143:-3.54104977063;LHX3,4:-3.59610803315 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11862-125A8;search_select_hide=table117:FF:11862-125A8 | |||
}} | }} |
Latest revision as of 18:24, 4 June 2020
Name: | CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13467 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13467
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13467
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0898 |
10 | 10 | 0.0129 |
100 | 100 | 0.934 |
101 | 101 | 0.988 |
102 | 102 | 0.822 |
103 | 103 | 0.401 |
104 | 104 | 0.604 |
105 | 105 | 0.204 |
106 | 106 | 9.23421e-4 |
107 | 107 | 0.27 |
108 | 108 | 0.938 |
109 | 109 | 0.294 |
11 | 11 | 0.15 |
110 | 110 | 0.121 |
111 | 111 | 0.0256 |
112 | 112 | 0.376 |
113 | 113 | 0.523 |
114 | 114 | 0.0134 |
115 | 115 | 0.288 |
116 | 116 | 0.821 |
117 | 117 | 0.0385 |
118 | 118 | 0.168 |
119 | 119 | 0.137 |
12 | 12 | 0.349 |
120 | 120 | 0.968 |
121 | 121 | 0.501 |
122 | 122 | 0.736 |
123 | 123 | 0.0807 |
124 | 124 | 0.637 |
125 | 125 | 0.358 |
126 | 126 | 0.292 |
127 | 127 | 0.421 |
128 | 128 | 0.039 |
129 | 129 | 0.492 |
13 | 13 | 0.0767 |
130 | 130 | 0.0724 |
131 | 131 | 0.768 |
132 | 132 | 0.0765 |
133 | 133 | 0.569 |
134 | 134 | 0.596 |
135 | 135 | 0.746 |
136 | 136 | 0.887 |
137 | 137 | 0.0152 |
138 | 138 | 0.223 |
139 | 139 | 0.0543 |
14 | 14 | 0.421 |
140 | 140 | 0.316 |
141 | 141 | 0.271 |
142 | 142 | 0.0982 |
143 | 143 | 0.0457 |
144 | 144 | 0.812 |
145 | 145 | 0.269 |
146 | 146 | 0.547 |
147 | 147 | 0.516 |
148 | 148 | 0.0176 |
149 | 149 | 0.823 |
15 | 15 | 0.177 |
150 | 150 | 0.438 |
151 | 151 | 0.418 |
152 | 152 | 0.216 |
153 | 153 | 0.734 |
154 | 154 | 0.435 |
155 | 155 | 0.719 |
156 | 156 | 0.499 |
157 | 157 | 0.53 |
158 | 158 | 0.0165 |
159 | 159 | 0.929 |
16 | 16 | 0.294 |
160 | 160 | 0.408 |
161 | 161 | 0.605 |
162 | 162 | 0.223 |
163 | 163 | 0.124 |
164 | 164 | 0.0727 |
165 | 165 | 0.179 |
166 | 166 | 0.633 |
167 | 167 | 0.104 |
168 | 168 | 0.346 |
169 | 169 | 0.0117 |
17 | 17 | 0.229 |
18 | 18 | 0.175 |
19 | 19 | 0.428 |
2 | 2 | 0.507 |
20 | 20 | 0.157 |
21 | 21 | 0.512 |
22 | 22 | 0.365 |
23 | 23 | 0.0437 |
24 | 24 | 0.321 |
25 | 25 | 0.421 |
26 | 26 | 0.0476 |
27 | 27 | 0.536 |
28 | 28 | 0.48 |
29 | 29 | 0.212 |
3 | 3 | 0.101 |
30 | 30 | 0.393 |
31 | 31 | 0.888 |
32 | 32 | 0.929 |
33 | 33 | 0.284 |
34 | 34 | 0.786 |
35 | 35 | 0.151 |
36 | 36 | 0.0885 |
37 | 37 | 0.0724 |
38 | 38 | 0.407 |
39 | 39 | 0.863 |
4 | 4 | 0.812 |
40 | 40 | 0.207 |
41 | 41 | 0.0123 |
42 | 42 | 0.366 |
43 | 43 | 0.032 |
44 | 44 | 0.941 |
45 | 45 | 0.965 |
46 | 46 | 0.184 |
47 | 47 | 0.539 |
48 | 48 | 0.526 |
49 | 49 | 0.123 |
5 | 5 | 0.327 |
50 | 50 | 0.976 |
51 | 51 | 0.523 |
52 | 52 | 0.398 |
53 | 53 | 0.465 |
54 | 54 | 0.404 |
55 | 55 | 0.551 |
56 | 56 | 0.711 |
57 | 57 | 0.742 |
58 | 58 | 0.138 |
59 | 59 | 0.355 |
6 | 6 | 0.674 |
60 | 60 | 0.0518 |
61 | 61 | 0.704 |
62 | 62 | 0.0728 |
63 | 63 | 0.482 |
64 | 64 | 0.397 |
65 | 65 | 0.26 |
66 | 66 | 0.24 |
67 | 67 | 0.619 |
68 | 68 | 0.803 |
69 | 69 | 0.462 |
7 | 7 | 0.295 |
70 | 70 | 0.0343 |
71 | 71 | 0.0305 |
72 | 72 | 0.217 |
73 | 73 | 0.166 |
74 | 74 | 0.0896 |
75 | 75 | 0.093 |
76 | 76 | 0.133 |
77 | 77 | 0.57 |
78 | 78 | 0.0784 |
79 | 79 | 0.2 |
8 | 8 | 0.394 |
80 | 80 | 0.381 |
81 | 81 | 0.377 |
82 | 82 | 0.173 |
83 | 83 | 0.0697 |
84 | 84 | 0.246 |
85 | 85 | 0.0191 |
86 | 86 | 0.0677 |
87 | 87 | 0.98 |
88 | 88 | 0.578 |
89 | 89 | 0.327 |
9 | 9 | 0.531 |
90 | 90 | 0.0665 |
91 | 91 | 0.255 |
92 | 92 | 0.26 |
93 | 93 | 0.445 |
94 | 94 | 0.0684 |
95 | 95 | 0.348 |
96 | 96 | 0.666 |
97 | 97 | 0.792 |
98 | 98 | 0.135 |
99 | 99 | 0.0406 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13467
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011444 CD14-positive monocytes - treated with Trehalose dimycolate (TDM) sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000631 (trehalose dimycolate (TDM) treatment sample)
0011444 (CD14-positive monocytes - treated with Trehalose dimycolate (TDM) sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)