FF:11453-119A4: Difference between revisions

Latest revision as of 18:02, 4 June 2020

Name:	Bronchial Epithelial Cell, donor4
Species:	Human (Homo sapiens)
Library ID:	CNhs12054
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	20 years old adult
sex	male
age	20
cell type	epithelial cell of lung, bronchial
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1858
catalog number	CA502-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005472

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12054		CAGE		DRX008122		DRR008994

Accession ID Hg19

Library id		BAM		CTSS
CNhs12054		DRZ000419		DRZ001804

Accession ID Hg38

Library id		BAM		CTSS
CNhs12054		DRZ011769		DRZ013154

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005472

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10008.GTGAAA		sRNA-Seq		DRX037124		DRR041490

Accession ID Hg19

Library id		BAM		CTSS
SRhi10008.GTGAAA		DRZ007132

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.169
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.158
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.265
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.579
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.331
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.967
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.239
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	1.196
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	1.07
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.283
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.403
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12054

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.789
MA0003.1	MA0003.1	0.328
MA0004.1	MA0004.1	0.817
MA0006.1	MA0006.1	0.303
MA0007.1	MA0007.1	0.181
MA0009.1	MA0009.1	0.0448
MA0014.1	MA0014.1	0.46
MA0017.1	MA0017.1	0.0183
MA0018.2	MA0018.2	0.25
MA0019.1	MA0019.1	0.221
MA0024.1	MA0024.1	0.633
MA0025.1	MA0025.1	0.409
MA0027.1	MA0027.1	0.481
MA0028.1	MA0028.1	0.0187
MA0029.1	MA0029.1	0.248
MA0030.1	MA0030.1	0.423
MA0031.1	MA0031.1	0.0113
MA0035.2	MA0035.2	0.111
MA0038.1	MA0038.1	0.241
MA0039.2	MA0039.2	0.00368
MA0040.1	MA0040.1	0.286
MA0041.1	MA0041.1	0.403
MA0042.1	MA0042.1	0.871
MA0043.1	MA0043.1	0.389
MA0046.1	MA0046.1	0.528
MA0047.2	MA0047.2	0.536
MA0048.1	MA0048.1	0.617
MA0050.1	MA0050.1	1.27383e-9
MA0051.1	MA0051.1	7.93155e-4
MA0052.1	MA0052.1	0.971
MA0055.1	MA0055.1	0.0015
MA0057.1	MA0057.1	0.0514
MA0058.1	MA0058.1	0.627
MA0059.1	MA0059.1	0.164
MA0060.1	MA0060.1	0.0129
MA0061.1	MA0061.1	0.592
MA0062.2	MA0062.2	0.00456
MA0065.2	MA0065.2	0.00257
MA0066.1	MA0066.1	0.108
MA0067.1	MA0067.1	0.139
MA0068.1	MA0068.1	0.00388
MA0069.1	MA0069.1	0.529
MA0070.1	MA0070.1	0.886
MA0071.1	MA0071.1	0.936
MA0072.1	MA0072.1	0.912
MA0073.1	MA0073.1	0.531
MA0074.1	MA0074.1	0.934
MA0076.1	MA0076.1	0.107
MA0077.1	MA0077.1	0.577
MA0078.1	MA0078.1	0.682
MA0079.2	MA0079.2	0.712
MA0080.2	MA0080.2	0.121
MA0081.1	MA0081.1	0.597
MA0083.1	MA0083.1	0.391
MA0084.1	MA0084.1	0.0318
MA0087.1	MA0087.1	0.348
MA0088.1	MA0088.1	0.0763
MA0090.1	MA0090.1	0.0251
MA0091.1	MA0091.1	0.951
MA0092.1	MA0092.1	0.451
MA0093.1	MA0093.1	0.747
MA0099.2	MA0099.2	3.98096e-13
MA0100.1	MA0100.1	0.0646
MA0101.1	MA0101.1	0.755
MA0102.2	MA0102.2	0.0296
MA0103.1	MA0103.1	2.13766e-6
MA0104.2	MA0104.2	0.428
MA0105.1	MA0105.1	0.514
MA0106.1	MA0106.1	2.32738e-6
MA0107.1	MA0107.1	0.937
MA0108.2	MA0108.2	0.00513
MA0111.1	MA0111.1	0.901
MA0112.2	MA0112.2	0.0241
MA0113.1	MA0113.1	0.737
MA0114.1	MA0114.1	0.0187
MA0115.1	MA0115.1	0.486
MA0116.1	MA0116.1	0.0787
MA0117.1	MA0117.1	0.957
MA0119.1	MA0119.1	0.398
MA0122.1	MA0122.1	0.89
MA0124.1	MA0124.1	0.89
MA0125.1	MA0125.1	0.218
MA0131.1	MA0131.1	0.627
MA0135.1	MA0135.1	0.0521
MA0136.1	MA0136.1	0.458
MA0137.2	MA0137.2	0.339
MA0138.2	MA0138.2	0.169
MA0139.1	MA0139.1	0.556
MA0140.1	MA0140.1	0.273
MA0141.1	MA0141.1	0.0945
MA0142.1	MA0142.1	0.00695
MA0143.1	MA0143.1	0.837
MA0144.1	MA0144.1	0.98
MA0145.1	MA0145.1	0.0639
MA0146.1	MA0146.1	0.0464
MA0147.1	MA0147.1	0.256
MA0148.1	MA0148.1	0.394
MA0149.1	MA0149.1	0.0332
MA0150.1	MA0150.1	0.223
MA0152.1	MA0152.1	0.225
MA0153.1	MA0153.1	0.0697
MA0154.1	MA0154.1	0.232
MA0155.1	MA0155.1	0.607
MA0156.1	MA0156.1	0.147
MA0157.1	MA0157.1	0.144
MA0159.1	MA0159.1	0.116
MA0160.1	MA0160.1	0.089
MA0162.1	MA0162.1	0.0717
MA0163.1	MA0163.1	0.147
MA0164.1	MA0164.1	0.62
MA0258.1	MA0258.1	0.166
MA0259.1	MA0259.1	0.431

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12054

Novel motif	Logo	P-value
1	1	0.434
10	10	0.77
100	100	0.183
101	101	0.00547
102	102	0.28
103	103	0.219
104	104	0.575
105	105	0.163
106	106	0.264
107	107	0.344
108	108	0.837
109	109	1.58616e-4
11	11	0.0463
110	110	0.0168
111	111	0.594
112	112	0.63
113	113	0.528
114	114	0.45
115	115	0.333
116	116	0.142
117	117	0.175
118	118	0.688
119	119	0.212
12	12	0.303
120	120	0.06
121	121	0.38
122	122	0.0166
123	123	0.56
124	124	0.566
125	125	0.676
126	126	0.437
127	127	0.107
128	128	0.983
129	129	0.114
13	13	0.00426
130	130	0.414
131	131	0.253
132	132	0.602
133	133	0.0029
134	134	0.191
135	135	0.769
136	136	0.0956
137	137	0.378
138	138	0.968
139	139	0.718
14	14	0.941
140	140	0.91
141	141	0.966
142	142	0.0592
143	143	0.923
144	144	0.123
145	145	0.852
146	146	0.0113
147	147	0.141
148	148	0.618
149	149	0.949
15	15	0.635
150	150	0.539
151	151	0.518
152	152	0.111
153	153	0.597
154	154	0.312
155	155	0.402
156	156	0.276
157	157	0.731
158	158	0.316
159	159	0.795
16	16	0.153
160	160	0.0854
161	161	0.0894
162	162	0.625
163	163	0.481
164	164	0.467
165	165	0.647
166	166	0.57
167	167	0.719
168	168	0.518
169	169	0.0716
17	17	0.112
18	18	0.525
19	19	0.806
2	2	0.126
20	20	0.971
21	21	0.973
22	22	0.157
23	23	0.973
24	24	0.0398
25	25	0.623
26	26	0.0721
27	27	0.224
28	28	0.849
29	29	0.223
3	3	0.618
30	30	0.12
31	31	0.644
32	32	0.968
33	33	0.142
34	34	0.772
35	35	0.502
36	36	0.0794
37	37	0.248
38	38	0.132
39	39	0.604
4	4	0.593
40	40	0.00154
41	41	0.669
42	42	0.624
43	43	0.666
44	44	0.673
45	45	0.21
46	46	0.391
47	47	0.149
48	48	0.042
49	49	0.955
5	5	0.577
50	50	0.506
51	51	0.808
52	52	0.431
53	53	0.587
54	54	0.893
55	55	0.523
56	56	0.364
57	57	0.369
58	58	0.784
59	59	0.0539
6	6	0.231
60	60	0.228
61	61	0.489
62	62	0.899
63	63	0.279
64	64	0.166
65	65	0.326
66	66	0.206
67	67	0.965
68	68	0.911
69	69	0.337
7	7	0.203
70	70	0.0684
71	71	0.1
72	72	0.951
73	73	0.0402
74	74	0.041
75	75	0.206
76	76	0.719
77	77	0.0293
78	78	0.0594
79	79	0.467
8	8	0.141
80	80	0.729
81	81	0.965
82	82	0.774
83	83	0.993
84	84	0.732
85	85	0.899
86	86	0.919
87	87	0.00712
88	88	0.774
89	89	0.0607
9	9	0.642
90	90	0.00702
91	91	0.694
92	92	0.81
93	93	0.831
94	94	0.835
95	95	0.00644
96	96	0.654
97	97	0.712
98	98	0.205
99	99	0.0543

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12054

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000015 human bronchial epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0002328 (bronchial epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000485 (simple columnar epithelium)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0004815 (lower respiratory tract epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0002031 (epithelium of bronchus)
0002185 (bronchus)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000015 (human bronchial epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005472
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005472
+|accession_numbers=CAGE;DRX008122;DRR008994;DRZ000419;DRZ001804;DRZ011769;DRZ013154
+|accession_numbers_RNASeq=sRNA-Seq;DRX037124;DRR041490;DRZ007132
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0009569,UBERON:0005178,UBERON:0000485,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0004815,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0002031,UBERON:0002185,UBERON:0000065,UBERON:0001558,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000082,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0002328
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.59!385.24!SOX15;;chr1:6479968..6479986,-!p1@HES2!1.98!94.70!HES2;;chr15:83953397..83953425,-!p1@BNC1!1.79!69.88!BNC1;;chr1:209979467..209979494,-!p1@IRF6!1.76!63.44!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.70!49.65!IRF6;;chr11:34642612..34642646,+!p1@EHF!1.70!48.73!EHF;;chr3:111314186..111314204,-!p1@ZBED2!1.61!39.54!ZBED2;;chr5:134369905..134369972,-!p1@PITX1!1.60!57.92!PITX1;;chr6:34524093..34524135,-!p1@SPDEF!1.60!38.62!SPDEF;;chr12:54785074..54785122,-!p2@ZNF385A!1.59!57.00!ZNF385A;;chr12:54785054..54785072,-!p4@ZNF385A!1.59!43.21!ZNF385A;;chr6:34524049..34524089,-!p2@SPDEF!1.53!33.10!SPDEF;;chr6:10415276..10415341,-!p2@TFAP2A!1.47!34.94!TFAP2A;;chr4:57547454..57547469,-!p1@HOPX!1.47!28.50!HOPX;;chr11:65686802..65686818,+!p6@DRAP1!1.44!45.97!DRAP1;;chr6:10412600..10412637,-!p1@TFAP2A!1.41!40.45!TFAP2A;;chr6:34524025..34524045,-!p3@SPDEF!1.41!24.82!SPDEF;;chr22:19748231..19748317,+!p1@TBX1!1.40!23.90!TBX1;;chr17:7492684..7492778,-!p2@SOX15!1.39!48.73!SOX15;;chr3:189507432..189507459,+!p1@TP63!1.35!21.15!TP63;;chr11:120107344..120107351,+!p1@POU2F3!1.33!24.82!POU2F3;;chr8:10588010..10588030,-!p1@SOX7!1.33!20.23!SOX7;;chr5:134369879..134369898,-!p2@PITX1!1.20!14.71!PITX1;;chr11:129245526..129245553,+!p1@BARX2!1.20!14.71!BARX2;;chr5:2751762..2751784,-!p1@IRX2!1.14!12.87!IRX2;;chr19:45579725..45579743,-!p1@ZNF296!1.13!56.08!ZNF296;;chr14:38064429..38064486,-!p1@FOXA1!1.11!11.95!FOXA1;;chr14:90085820..90085840,-!p6@FOXN3!1.11!11.95!FOXN3;;chr19:45908292..45908374,-!p1@PPP1R13L!1.10!102.06!PPP1R13L;;chr2:46524897..46524911,+!p2@EPAS1!1.08!31.26!EPAS1;;chr6:10415484..10415508,-!p3@TFAP2A!1.08!11.03!TFAP2A;;chr12:27485762..27485776,+!p3@ARNTL2!1.05!27.58!ARNTL2;;chr11:34645791..34645836,+!p3@EHF!1.05!10.11!EHF;;chr14:37131058..37131139,+!p1@PAX9!1.05!10.11!PAX9;;chr1:2461692..2461710,-!p1@HES5!1.05!10.11!HES5;;chr15:101069113..101069169,-!p1@CERS3!1.05!10.11!CERS3;;chr13:73633131..73633149,+!p1@KLF5!1.02!102.06!KLF5;;chr11:65686732..65686756,+!p2@DRAP1!1.02!40.45!DRAP1;;chr17:45928443..45928473,-!p2@SP6!1.01!9.19!SP6;;chr17:8027418..8027432,-!p1@HES7!1.01!9.19!HES7;;chr2:122042770..122042785,-!p1@TFCP2L1!1.01!9.19!TFCP2L1;;chr8:128748308..128748324,+!p2@MYC!0.99!250.08!MYC;;chr1:37940170..37940190,+!p1@ZC3H12A!0.99!111.25!ZC3H12A;;chr8:128747661..128747703,+!p6@MYC!0.99!11.95!MYC;;chr8:49833948..49833973,-!p2@SNAI2!0.98!55.17!SNAI2;;chr1:24645832..24645853,+!p1@GRHL3!0.97!8.27!GRHL3;;chr17:7492979..7492991,-!p5@SOX15!0.97!8.27!SOX15;;chr1:8934931..8934947,-!p4@ENO1!0.93!25.74!ENO1;;chr17:80797886..80797906,-!p1@ZNF750!0.92!7.36!ZNF750;;chr11:34642656..34642667,+!p2@EHF!0.92!7.36!EHF;;chr2:113994526..113994556,-!p3@PAX8!0.92!7.36!PAX8;;chrY:21906594..21906622,-!p1@KDM5D!0.92!7.36!KDM5D;;chr12:66218598..66218645,+!p2@HMGA2!0.91!34.02!HMGA2;;chr14:21566731..21566836,-!p1@ZNF219!0.90!78.15!ZNF219;;chr12:66218255..66218304,+!p3@HMGA2!0.90!19.31!HMGA2;;chr22:21355865..21355886,-!p5@THAP7!0.87!7.36!THAP7;;chr2:45236540..45236577,-!p1@SIX2!0.87!6.44!SIX2;;chr3:111314230..111314241,-!p2@ZBED2!0.87!6.44!ZBED2;;chr17:45928521..45928539,-!p1@SP6!0.87!6.44!SP6;;chr1:201979703..201979721,+!p2@ELF3!0.87!6.44!ELF3;;chr6:10412576..10412599,-!p5@TFAP2A!0.87!6.44!TFAP2A;;chr6:10415263..10415274,-!p8@TFAP2A!0.87!6.44!TFAP2A;;chr20:42295745..42295765,+!p1@MYBL2!0.86!108.49!MYBL2;;chr16:54964740..54964789,+!p1@IRX5!0.86!9.19!IRX5;;chr12:7079780..7079791,-!p2@PHB2!0.85!34.02!PHB2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.84!453.27!TAX1BP3;;chr1:8926369..8926385,-!p12@ENO1!0.84!8.27!ENO1;;chr2:169312600..169312606,+!p2@CERS6!0.82!9.19!CERS6;;chr11:65667846..65667868,-!p1@FOSL1!0.81!157.22!FOSL1;;chr12:27485785..27485816,+!p1@ARNTL2!0.81!41.37!ARNTL2;;chr2:70314240..70314256,+!p4@PCBP1!0.81!11.95!PCBP1;;chr4:121843402..121843416,+!p4@PRDM5!0.81!5.52!PRDM5;;chr1:209979449..209979460,-!p3@IRF6!0.81!5.52!IRF6;;chr1:24645921..24645973,+!p2@GRHL3!0.81!5.52!GRHL3;;chr20:18038521..18038571,-!p1@OVOL2!0.81!5.52!OVOL2;;chr17:7492504..7492520,-!p3@SOX15!0.81!5.52!SOX15;;chr11:65554528..65554546,+!p1@OVOL1!0.81!5.52!OVOL1;;chr11:65554563..65554576,+!p2@OVOL1!0.81!5.52!OVOL1;;chr9:22447422..22447483,+!p1@DMRTA1!0.81!5.52!DMRTA1;;chr2:239756739..239756755,+!p2@TWIST2!0.79!9.19!TWIST2;;chr17:41623692..41623715,-!p1@ETV4!0.78!22.99!ETV4;;chr11:47236584..47236679,+!p1@DDB2!0.76!57.00!DDB2;;chr3:141121847..141121868,+!p5@ZBTB38!0.75!7.36!ZBTB38;;chr2:63277948..63277974,+!p1@OTX1!0.75!4.60!OTX1;;chr3:189507460..189507471,+!p3@TP63!0.75!4.60!TP63;;chr4:299227..299272,-!p1@ZNF732!0.75!4.60!ZNF732;;chr19:45579699..45579704,-!p3@ZNF296!0.75!4.60!ZNF296;;chr8:102504690..102504704,+!p3@GRHL2!0.75!4.60!GRHL2;;chr14:37051798..37051831,-!p1@NKX2-8!0.75!4.60!NKX2-8;;chr8:49833978..49833996,-!p1@SNAI2!0.74!102.06!SNAI2;;chr12:53625966..53626012,-!p2@RARG!0.74!12.87!RARG;;chr20:50721803..50721857,-!p2@ZFP64!0.74!7.36!ZFP64;;chr1:8938709..8938720,-!p3@ENO1!0.72!233.53!ENO1;;chr16:29818160..29818188,+!p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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000082;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002328;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000485;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002048;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002185;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
 |ffid_belonging_in_development=CL:0000223
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor4.CNhs12054.11453-119A4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor4.CNhs12054.11453-119A4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor4.CNhs12054.11453-119A4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor4.CNhs12054.11453-119A4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor4.CNhs12054.11453-119A4.hg38.nobarcode.ctss.bed.gz
 |id=FF:11453-119A4
 |is_a=EFO:0002091;;FF:0000015
 |is_obsolete=
+|library_id=CNhs12054
+|library_id_phase_based=2:CNhs12054
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11453
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.GTGAAA.11453
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11453
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.GTGAAA.11453
 |name=Bronchial Epithelial Cell, donor4
 |namespace=FANTOM5
@@ Line 46: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12054,LSID838,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10008,,,
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 |rna_box=119
@@ Line 61: / Line 82: @@
 |rna_tube_id=119A4
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10008.GTGAAA
 |sample_age=20
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 83: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11453-119A4;search_select_hide=table117:FF:11453-119A4
 }}

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FF:11453-119A4: Difference between revisions

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Latest revision as of 18:02, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0