FF:11675-122H1: Difference between revisions

Latest revision as of 18:14, 4 June 2020

Name:	Renal Glomerular Endothelial Cells, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12624
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	NA
sex	NA
age	NA
cell type	endothelial cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	5993
catalog number	SC4005
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005025

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12624		CAGE		DRX008432		DRR009304

Accession ID Hg19

Library id		BAM		CTSS
CNhs12624		DRZ000729		DRZ002114

Accession ID Hg38

Library id		BAM		CTSS
CNhs12624		DRZ012079		DRZ013464

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.383
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.834
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.436
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0849
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0423
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.164
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0888
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0681
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0492
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.63
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.44
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.318
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.318
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	-0.0111
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0849
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.555
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0849
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.361
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12624

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.90509e-4
MA0003.1	MA0003.1	0.741
MA0004.1	MA0004.1	0.559
MA0006.1	MA0006.1	0.0446
MA0007.1	MA0007.1	0.393
MA0009.1	MA0009.1	0.806
MA0014.1	MA0014.1	0.829
MA0017.1	MA0017.1	0.579
MA0018.2	MA0018.2	3.80378e-5
MA0019.1	MA0019.1	0.0618
MA0024.1	MA0024.1	4.43733e-5
MA0025.1	MA0025.1	0.127
MA0027.1	MA0027.1	0.742
MA0028.1	MA0028.1	0.0762
MA0029.1	MA0029.1	0.953
MA0030.1	MA0030.1	0.041
MA0031.1	MA0031.1	0.0138
MA0035.2	MA0035.2	0.969
MA0038.1	MA0038.1	0.108
MA0039.2	MA0039.2	0.558
MA0040.1	MA0040.1	0.87
MA0041.1	MA0041.1	0.313
MA0042.1	MA0042.1	0.649
MA0043.1	MA0043.1	6.68524e-8
MA0046.1	MA0046.1	0.0069
MA0047.2	MA0047.2	0.42
MA0048.1	MA0048.1	0.28
MA0050.1	MA0050.1	0.141
MA0051.1	MA0051.1	0.797
MA0052.1	MA0052.1	0.338
MA0055.1	MA0055.1	0.404
MA0057.1	MA0057.1	0.352
MA0058.1	MA0058.1	0.225
MA0059.1	MA0059.1	0.679
MA0060.1	MA0060.1	0.0113
MA0061.1	MA0061.1	0.0478
MA0062.2	MA0062.2	6.1234e-4
MA0065.2	MA0065.2	0.503
MA0066.1	MA0066.1	0.98
MA0067.1	MA0067.1	7.81451e-4
MA0068.1	MA0068.1	0.587
MA0069.1	MA0069.1	0.021
MA0070.1	MA0070.1	0.714
MA0071.1	MA0071.1	0.714
MA0072.1	MA0072.1	0.349
MA0073.1	MA0073.1	0.974
MA0074.1	MA0074.1	0.603
MA0076.1	MA0076.1	0.00136
MA0077.1	MA0077.1	5.38846e-4
MA0078.1	MA0078.1	0.0334
MA0079.2	MA0079.2	0.198
MA0080.2	MA0080.2	0.241
MA0081.1	MA0081.1	0.866
MA0083.1	MA0083.1	0.57
MA0084.1	MA0084.1	0.247
MA0087.1	MA0087.1	0.553
MA0088.1	MA0088.1	0.151
MA0090.1	MA0090.1	0.162
MA0091.1	MA0091.1	0.5
MA0092.1	MA0092.1	0.973
MA0093.1	MA0093.1	0.525
MA0099.2	MA0099.2	0.627
MA0100.1	MA0100.1	0.591
MA0101.1	MA0101.1	0.508
MA0102.2	MA0102.2	8.41938e-6
MA0103.1	MA0103.1	0.0111
MA0104.2	MA0104.2	0.0406
MA0105.1	MA0105.1	0.548
MA0106.1	MA0106.1	0.013
MA0107.1	MA0107.1	0.166
MA0108.2	MA0108.2	0.12
MA0111.1	MA0111.1	0.981
MA0112.2	MA0112.2	0.175
MA0113.1	MA0113.1	0.99
MA0114.1	MA0114.1	0.181
MA0115.1	MA0115.1	0.24
MA0116.1	MA0116.1	0.457
MA0117.1	MA0117.1	0.188
MA0119.1	MA0119.1	0.45
MA0122.1	MA0122.1	0.855
MA0124.1	MA0124.1	0.823
MA0125.1	MA0125.1	0.948
MA0131.1	MA0131.1	0.327
MA0135.1	MA0135.1	0.488
MA0136.1	MA0136.1	0.116
MA0137.2	MA0137.2	0.294
MA0138.2	MA0138.2	0.849
MA0139.1	MA0139.1	0.958
MA0140.1	MA0140.1	0.881
MA0141.1	MA0141.1	0.486
MA0142.1	MA0142.1	0.963
MA0143.1	MA0143.1	0.6
MA0144.1	MA0144.1	0.679
MA0145.1	MA0145.1	0.868
MA0146.1	MA0146.1	0.0226
MA0147.1	MA0147.1	0.232
MA0148.1	MA0148.1	0.356
MA0149.1	MA0149.1	0.162
MA0150.1	MA0150.1	0.181
MA0152.1	MA0152.1	0.461
MA0153.1	MA0153.1	0.489
MA0154.1	MA0154.1	0.22
MA0155.1	MA0155.1	0.353
MA0156.1	MA0156.1	0.842
MA0157.1	MA0157.1	0.258
MA0159.1	MA0159.1	0.383
MA0160.1	MA0160.1	0.0769
MA0162.1	MA0162.1	0.0632
MA0163.1	MA0163.1	0.204
MA0164.1	MA0164.1	0.97
MA0258.1	MA0258.1	0.0346
MA0259.1	MA0259.1	0.507

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12624

Novel motif	Logo	P-value
1	1	0.37
10	10	0.239
100	100	0.299
101	101	0.164
102	102	0.81
103	103	0.518
104	104	0.994
105	105	0.0992
106	106	0.381
107	107	0.0336
108	108	0.75
109	109	0.587
11	11	0.829
110	110	0.582
111	111	0.436
112	112	0.571
113	113	0.342
114	114	0.36
115	115	0.521
116	116	0.81
117	117	0.0622
118	118	0.715
119	119	0.881
12	12	0.0506
120	120	0.00892
121	121	0.944
122	122	0.361
123	123	0.00184
124	124	0.0561
125	125	0.995
126	126	0.998
127	127	0.481
128	128	0.874
129	129	0.895
13	13	0.466
130	130	0.454
131	131	0.0734
132	132	0.364
133	133	0.792
134	134	0.415
135	135	0.974
136	136	0.0451
137	137	0.11
138	138	0.977
139	139	0.00975
14	14	0.29
140	140	0.892
141	141	0.707
142	142	0.261
143	143	0.487
144	144	0.834
145	145	0.603
146	146	0.823
147	147	0.0409
148	148	0.498
149	149	0.821
15	15	0.274
150	150	0.0548
151	151	0.244
152	152	0.0125
153	153	0.198
154	154	0.861
155	155	0.148
156	156	0.428
157	157	0.0421
158	158	0.0641
159	159	0.546
16	16	0.812
160	160	0.138
161	161	0.673
162	162	0.246
163	163	0.4
164	164	0.442
165	165	0.876
166	166	0.544
167	167	0.148
168	168	0.182
169	169	0.635
17	17	0.735
18	18	0.874
19	19	0.987
2	2	0.843
20	20	0.533
21	21	0.942
22	22	0.292
23	23	0.861
24	24	0.448
25	25	0.651
26	26	0.843
27	27	0.862
28	28	0.254
29	29	0.494
3	3	0.362
30	30	0.788
31	31	0.479
32	32	0.711
33	33	0.842
34	34	0.858
35	35	0.022
36	36	0.743
37	37	0.893
38	38	0.717
39	39	0.149
4	4	0.553
40	40	0.656
41	41	0.852
42	42	0.728
43	43	0.0831
44	44	0.0371
45	45	0.841
46	46	0.985
47	47	0.825
48	48	0.922
49	49	0.0216
5	5	0.556
50	50	0.927
51	51	0.869
52	52	0.368
53	53	0.0326
54	54	0.608
55	55	0.267
56	56	0.785
57	57	0.867
58	58	0.12
59	59	0.449
6	6	0.281
60	60	0.171
61	61	0.652
62	62	0.212
63	63	0.859
64	64	0.437
65	65	0.725
66	66	0.363
67	67	0.73
68	68	0.338
69	69	0.604
7	7	0.295
70	70	0.0203
71	71	0.236
72	72	0.735
73	73	0.0628
74	74	0.819
75	75	0.239
76	76	0.17
77	77	0.617
78	78	0.834
79	79	0.334
8	8	0.446
80	80	0.432
81	81	0.422
82	82	0.136
83	83	0.555
84	84	0.00651
85	85	0.185
86	86	0.396
87	87	0.646
88	88	0.38
89	89	0.916
9	9	0.89
90	90	0.103
91	91	0.597
92	92	0.504
93	93	0.428
94	94	0.623
95	95	0.996
96	96	0.581
97	97	0.591
98	98	0.184
99	99	0.00597

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12624

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000153 human renal glomerular endothelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000666 (fenestrated cell)
1000746 (glomerular cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
0002584 (renal cortical epithelial cell)
1000612 (kidney corpuscule cell)
0002188 (glomerular endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0010317 (germ layer / neural crest derived structure)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0001285 (nephron)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0001229 (renal corpuscle)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000153 (human renal glomerular endothelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008324
+|DRA_sample_Accession=CAGE@SAMD00005025
-|accession_numbers=CAGE;DRX008432;DRR009304;DRZ000729;DRZ002114
+|accession_numbers=CAGE;DRX008432;DRR009304;DRZ000729;DRZ002114;DRZ012079;DRZ013464
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0010317,UBERON:0004819,UBERON:0005173,UBERON:0001285,UBERON:0000074,UBERON:0001225,UBERON:0001229,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000666,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:0002584,CL:1000612,CL:0002188
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.01!131.71!SOX18;;chr21:39870339..39870443,-!p1@ERG!1.89!76.00!ERG;;chr18:53068911..53068935,-!p4@TCF4!1.53!36.71!TCF4;;chr8:10588010..10588030,-!p1@SOX7!1.49!29.80!SOX7;;chr2:114036488..114036504,-!p1@PAX8!1.45!26.99!PAX8;;chr12:96588368..96588394,+!p3@ELK3!1.42!66.50!ELK3;;chr16:86600426..86600441,+!p1@FOXC2!1.32!47.93!FOXC2;;chr8:55370487..55370503,+!p1@SOX17!1.32!19.86!SOX17;;chr7:27205136..27205164,-!p1@HOXA9!1.26!17.27!HOXA9;;chr7:27205106..27205134,-!p2@HOXA9!1.21!15.11!HOXA9;;chr5:71803177..71803255,-!p1@ZNF366!1.19!14.47!ZNF366;;chr12:66218598..66218645,+!p2@HMGA2!1.16!61.32!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.16!36.06!HMGA2;;chr17:6926362..6926377,+!p1@BCL6B!1.16!13.39!BCL6B;;chr5:72744594..72744609,-!p1@FOXD1!1.11!54.63!FOXD1;;chr17:46688334..46688385,-!p1@HOXB7!1.09!16.41!HOXB7;;chr11:61520075..61520136,+!p1@C11orf9!1.07!23.10!C11orf9;;chr12:66218212..66218244,+!p5@HMGA2!1.07!15.76!HMGA2;;chr2:177053386..177053402,+!p1@HOXD1!1.07!10.80!HOXD1;;chr2:176994408..176994492,+!p1@HOXD8!1.06!10.36!HOXD8;;chr7:27224842..27224872,-!p1@HOXA11!1.03!9.72!HOXA11;;chr2:5832508..5832524,+!p1@SOX11!1.02!9.50!SOX11;;chr17:36105042..36105060,-!p1@HNF1B!1.01!9.28!HNF1B;;chr10:94449703..94449718,+!p1@HHEX!0.99!34.76!HHEX;;chr17:46682321..46682362,-!p1@HOXB6!0.99!8.85!HOXB6;;chr9:124991204..124991246,-!p1@LHX6!0.98!8.64!LHX6;;chr7:27192185..27192209,-!p1@HOXA3!0.97!8.42!HOXA3;;chr12:66218836..66218888,+!p1@HMGA2!0.96!77.51!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!0.94!15.11!HMGA2;;chr7:27196217..27196246,-!p2@HOXA7!0.94!7.77!HOXA7;;chr6:34204921..34204939,+!p3@HMGA1!0.92!228.22!HMGA1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.92!7.77!GLIS1;;chr2:45236540..45236577,-!p1@SIX2!0.91!7.13!SIX2;;chr7:27153454..27153469,-!p2@HOXA3!0.87!6.48!HOXA3;;chr19:13213399..13213414,-!p6@LYL1!0.87!6.48!LYL1;;chrY:21906594..21906622,-!p1@KDM5D!0.86!6.26!KDM5D;;chr7:27224795..27224840,-!p2@HOXA11!0.86!6.26!HOXA11;;chr3:169381420..169381535,-!p1@MECOM!0.85!7.13!MECOM;;chr10:102505493..102505546,+!p2@PAX2!0.85!6.05!PAX2;;chr19:13213511..13213545,-!p2@LYL1!0.83!6.26!LYL1;;chr7:27213893..27213954,-!p1@HOXA10!0.83!5.83!HOXA10;;chr1:23885981..23886002,-!p1@ID3!0.82!1054.32!ID3;;chr20:42295745..42295765,+!p1@MYBL2!0.81!96.08!MYBL2;;chr18:22932080..22932170,-!p1@ZNF521!0.81!24.83!ZNF521;;chr5:72743793..72743855,-!p4@FOXD1!0.81!6.48!FOXD1;;chr9:16705069..16705086,-!p3@BNC2!0.81!5.40!BNC2;;chr17:46675558..46675577,-!p2@HOXB6!0.79!5.18!HOXB6;;chr17:46690839..46690884,-!p1@HOXB8!0.79!5.18!HOXB8;;chr13:72441315..72441454,-!p1@DACH1!0.78!10.58!DACH1;;chr16:86600458..86600461,+!p3@FOXC2!0.78!4.97!FOXC2;;chr3:128206762..128206781,-!p2@GATA2!0.77!33.68!GATA2;;chr17:46687959..46688007,-!p2@HOXB7!0.77!6.91!HOXB7;;chr15:96881221..96881240,+!p19@NR2F2!0.77!6.69!NR2F2;;chr1:214161272..214161322,+!p1@PROX1!0.76!6.91!PROX1;;chr19:46801639..46801699,+!p1@HIF3A!0.76!4.75!HIF3A;;chr17:46691732..46691766,-!p4@HOXB8!0.76!4.75!HOXB8;;chr20:50721803..50721857,-!p2@ZFP64!0.75!7.56!ZFP64;;chr20:50159198..50159299,-!p1@NFATC2!0.75!7.13!NFATC2;;chr12:66218573..66218596,+!p7@HMGA2!0.75!7.13!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!0.74!19.00!FOSL1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.74!4.53!HOXC5;;chr3:69811882..69811898,+!p6@MITF!0.74!4.53!MITF;;chr7:27170359..27170381,-!p1@HOXA4!0.74!4.53!HOXA4;;chr5:72744445..72744466,-!p2@FOXD1!0.73!7.77!FOXD1;;chr7:27183263..27183284,-!p2@HOXA5!0.73!4.32!HOXA5;;chr2:176969228..176969260,+!p1@HOXD11!0.73!4.32!HOXD11;;chr2:237077022..237077038,-!p1@GBX2!0.73!4.32!GBX2;;chr4:299227..299272,-!p1@ZNF732!0.73!4.32!ZNF732;;chr19:53496768..53496799,-!p1@ZNF702P!0.71!6.69!ZNF702P;;chr12:54393880..54393962,+!p1@HOXC9!0.71!4.10!HOXC9;;chr12:66358080..66358094,+!p15@HMGA2!0.71!4.10!HMGA2;;chr7:27196267..27196311,-!p1@HOXA7!0.71!4.10!HOXA7;;chr15:96873984..96873999,+!p3@NR2F2!0.70!33.47!NR2F2;;chr20:50179368..50179392,-!p2@NFATC2!0.69!5.18!NFATC2;;chr17:46675420..46675465,-!p3@HOXB6!0.69!4.53!HOXB6;;chr17:35294075..35294102,+!p1@ENST00000559335!0.69!3.89!LHX1;;chr2:176969097..176969109,+!p3@HOXD11!0.69!3.89!HOXD11;;chr20:42295713..42295738,+!p2@MYBL2!0.67!24.83!MYBL2;;chr14:61116183..61116208,-!p1@SIX1!0.67!15.76!SIX1;;chr9:132427972..132428056,+!p1@PRRX2!0.67!4.97!PRRX2;;chr18:53068982..53068993,-!p20@TCF4!0.67!3.67!TCF4;;chr2:237076992..237077008,-!p2@GBX2!0.67!3.67!GBX2;;chr3:69811858..69811881,+!p5@MITF!0.67!3.67!MITF;;chr1:200008734..200008765,+!p2@NR5A2!0.67!3.67!NR5A2;;chr15:37392576..37392589,-!p12@MEIS2!0.66!4.53!MEIS2;;chr15:37390850..37390909,-!p3@MEIS2!0.65!7.56!MEIS2;;chr19:13213662..13213686,-!p1@LYL1!0.65!5.40!LYL1;;chr16:86600870..86600921,+!p2@FOXC2!0.65!3.45!FOXC2;;chr7:27183291..27183324,-!p1@HOXA5!0.65!3.45!HOXA5;;chr8:77593474..77593612,+!p1@ZFHX4!0.64!16.19!ZFHX4;;chr12:66218378..66218401,+!p6@HMGA2!0.64!5.61!HMGA2;;chr2:46524537..46524553,+!p1@EPAS1!0.63!385.63!EPAS1;;chr5:176738887..176738934,-!p1@MXD3!0.63!25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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002188;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000746;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009201
 |ffid_belonging_in_development=CL:0000222
 |fonse_cell_line=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor3.CNhs12624.11675-122H1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor3.CNhs12624.11675-122H1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor3.CNhs12624.11675-122H1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor3.CNhs12624.11675-122H1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor3.CNhs12624.11675-122H1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11675-122H1
 |is_a=EFO:0002091;;FF:0000153
 |is_obsolete=
 |library_id=CNhs12624
-|library_ids=CNhs12624
+|library_id_phase_based=2:CNhs12624
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11675
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11675
 |name=Renal Glomerular Endothelial Cells, donor3
 |namespace=FANTOM5
@@ Line 50: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12624,LSID952,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 89: / Line 101: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11675-122H1;search_select_hide=table117:FF:11675-122H1
 }}

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FF:11675-122H1: Difference between revisions

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Latest revision as of 18:14, 4 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0