FF:10764-110E8: Difference between revisions

Latest revision as of 15:03, 3 June 2020

Name:	acute myeloid leukemia (FAB M5) cell line:NOMO-1
Species:	Human (Homo sapiens)
Library ID:	CNhs13050
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	female
age	unknown
cell type	myeloid progenitor cell
cell line	NOMO-1
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004882

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13050		CAGE		DRX007811		DRR008683

Accession ID Hg19

Library id		BAM		CTSS
CNhs13050		DRZ000108		DRZ001493

Accession ID Hg38

Library id		BAM		CTSS
CNhs13050		DRZ011458		DRZ012843

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.131
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.493
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0.212
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0178
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.103
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0711
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.154
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0212
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0.357
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0633
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.601
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.583
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0752
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.475
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.357
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.211
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.268
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13050

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0258
MA0003.1	MA0003.1	0.955
MA0004.1	MA0004.1	0.127
MA0006.1	MA0006.1	0.658
MA0007.1	MA0007.1	0.887
MA0009.1	MA0009.1	0.392
MA0014.1	MA0014.1	0.292
MA0017.1	MA0017.1	0.00452
MA0018.2	MA0018.2	0.382
MA0019.1	MA0019.1	0.0657
MA0024.1	MA0024.1	3.89449e-8
MA0025.1	MA0025.1	0.0954
MA0027.1	MA0027.1	0.428
MA0028.1	MA0028.1	6.75513e-5
MA0029.1	MA0029.1	0.499
MA0030.1	MA0030.1	0.0261
MA0031.1	MA0031.1	0.0303
MA0035.2	MA0035.2	0.227
MA0038.1	MA0038.1	0.51
MA0039.2	MA0039.2	0.085
MA0040.1	MA0040.1	0.862
MA0041.1	MA0041.1	0.539
MA0042.1	MA0042.1	0.975
MA0043.1	MA0043.1	0.0427
MA0046.1	MA0046.1	0.523
MA0047.2	MA0047.2	0.181
MA0048.1	MA0048.1	0.118
MA0050.1	MA0050.1	0.274
MA0051.1	MA0051.1	0.807
MA0052.1	MA0052.1	0.0441
MA0055.1	MA0055.1	0.0358
MA0057.1	MA0057.1	0.41
MA0058.1	MA0058.1	0.12
MA0059.1	MA0059.1	0.166
MA0060.1	MA0060.1	1.69537e-6
MA0061.1	MA0061.1	0.382
MA0062.2	MA0062.2	2.27801e-9
MA0065.2	MA0065.2	0.0538
MA0066.1	MA0066.1	0.41
MA0067.1	MA0067.1	0.324
MA0068.1	MA0068.1	0.514
MA0069.1	MA0069.1	0.174
MA0070.1	MA0070.1	0.677
MA0071.1	MA0071.1	0.0811
MA0072.1	MA0072.1	0.451
MA0073.1	MA0073.1	0.32
MA0074.1	MA0074.1	0.124
MA0076.1	MA0076.1	1.18128e-4
MA0077.1	MA0077.1	0.921
MA0078.1	MA0078.1	0.703
MA0079.2	MA0079.2	0.915
MA0080.2	MA0080.2	4.34734e-13
MA0081.1	MA0081.1	0.00323
MA0083.1	MA0083.1	0.00469
MA0084.1	MA0084.1	0.323
MA0087.1	MA0087.1	0.197
MA0088.1	MA0088.1	0.352
MA0090.1	MA0090.1	1.29364e-6
MA0091.1	MA0091.1	0.275
MA0092.1	MA0092.1	0.604
MA0093.1	MA0093.1	0.156
MA0099.2	MA0099.2	8.45454e-6
MA0100.1	MA0100.1	6.42382e-4
MA0101.1	MA0101.1	0.125
MA0102.2	MA0102.2	0.0128
MA0103.1	MA0103.1	0.638
MA0104.2	MA0104.2	0.00275
MA0105.1	MA0105.1	0.748
MA0106.1	MA0106.1	0.971
MA0107.1	MA0107.1	0.018
MA0108.2	MA0108.2	0.00752
MA0111.1	MA0111.1	0.127
MA0112.2	MA0112.2	0.498
MA0113.1	MA0113.1	0.291
MA0114.1	MA0114.1	0.00301
MA0115.1	MA0115.1	0.0155
MA0116.1	MA0116.1	0.00593
MA0117.1	MA0117.1	0.479
MA0119.1	MA0119.1	0.387
MA0122.1	MA0122.1	0.415
MA0124.1	MA0124.1	0.342
MA0125.1	MA0125.1	0.978
MA0131.1	MA0131.1	0.0333
MA0135.1	MA0135.1	0.767
MA0136.1	MA0136.1	1.36659e-16
MA0137.2	MA0137.2	0.0359
MA0138.2	MA0138.2	0.417
MA0139.1	MA0139.1	0.825
MA0140.1	MA0140.1	0.0467
MA0141.1	MA0141.1	0.0937
MA0142.1	MA0142.1	0.246
MA0143.1	MA0143.1	0.686
MA0144.1	MA0144.1	0.23
MA0145.1	MA0145.1	0.141
MA0146.1	MA0146.1	0.0724
MA0147.1	MA0147.1	0.00771
MA0148.1	MA0148.1	0.0386
MA0149.1	MA0149.1	0.227
MA0150.1	MA0150.1	0.0559
MA0152.1	MA0152.1	0.483
MA0153.1	MA0153.1	0.1
MA0154.1	MA0154.1	0.874
MA0155.1	MA0155.1	0.29
MA0156.1	MA0156.1	3.57645e-12
MA0157.1	MA0157.1	0.152
MA0159.1	MA0159.1	0.992
MA0160.1	MA0160.1	0.00673
MA0162.1	MA0162.1	0.24
MA0163.1	MA0163.1	6.97949e-5
MA0164.1	MA0164.1	0.339
MA0258.1	MA0258.1	0.527
MA0259.1	MA0259.1	0.132

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13050

Novel motif	Logo	P-value
1	1	0.272
10	10	0.0191
100	100	0.327
101	101	0.287
102	102	0.377
103	103	0.874
104	104	0.777
105	105	0.574
106	106	0.924
107	107	0.277
108	108	0.539
109	109	0.0701
11	11	0.331
110	110	0.754
111	111	0.35
112	112	0.163
113	113	0.684
114	114	0.954
115	115	0.164
116	116	0.879
117	117	0.101
118	118	0.222
119	119	0.762
12	12	0.489
120	120	0.559
121	121	0.852
122	122	0.369
123	123	0.0156
124	124	0.512
125	125	0.765
126	126	0.672
127	127	0.117
128	128	0.691
129	129	0.531
13	13	6.98667e-4
130	130	0.927
131	131	0.0304
132	132	0.559
133	133	0.673
134	134	0.467
135	135	0.668
136	136	0.128
137	137	0.264
138	138	0.413
139	139	0.633
14	14	0.772
140	140	0.41
141	141	0.401
142	142	0.922
143	143	0.864
144	144	0.808
145	145	0.356
146	146	0.623
147	147	0.363
148	148	0.558
149	149	0.304
15	15	0.707
150	150	0.784
151	151	0.905
152	152	0.439
153	153	0.901
154	154	0.482
155	155	0.0587
156	156	0.933
157	157	0.243
158	158	0.628
159	159	0.884
16	16	0.458
160	160	0.591
161	161	0.121
162	162	0.907
163	163	0.532
164	164	0.587
165	165	0.399
166	166	0.266
167	167	0.123
168	168	0.424
169	169	0.257
17	17	0.817
18	18	0.619
19	19	0.975
2	2	0.0981
20	20	0.243
21	21	0.161
22	22	0.482
23	23	0.0194
24	24	0.355
25	25	0.207
26	26	0.364
27	27	1
28	28	0.796
29	29	0.503
3	3	0.21
30	30	0.0398
31	31	0.0991
32	32	0.0472
33	33	0.491
34	34	0.766
35	35	0.803
36	36	0.102
37	37	0.702
38	38	0.386
39	39	0.341
4	4	0.0363
40	40	0.0597
41	41	0.879
42	42	0.682
43	43	0.724
44	44	0.906
45	45	0.234
46	46	0.912
47	47	0.295
48	48	0.385
49	49	0.347
5	5	0.438
50	50	0.781
51	51	0.775
52	52	0.59
53	53	0.235
54	54	0.48
55	55	0.867
56	56	0.642
57	57	0.419
58	58	0.0575
59	59	0.505
6	6	0.982
60	60	0.639
61	61	0.122
62	62	0.198
63	63	0.387
64	64	0.804
65	65	0.291
66	66	0.00398
67	67	0.822
68	68	0.605
69	69	0.863
7	7	0.0688
70	70	0.473
71	71	0.051
72	72	0.227
73	73	0.463
74	74	0.892
75	75	0.0811
76	76	0.278
77	77	0.0579
78	78	0.0591
79	79	0.18
8	8	0.579
80	80	0.608
81	81	0.489
82	82	0.132
83	83	0.234
84	84	0.513
85	85	0.149
86	86	0.665
87	87	0.0286
88	88	0.425
89	89	0.122
9	9	0.773
90	90	0.384
91	91	0.316
92	92	0.34
93	93	0.89
94	94	0.661
95	95	0.0581
96	96	0.91
97	97	0.57
98	98	0.363
99	99	0.0288

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13050

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101883 acute myeloid leukemia cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007706
+|DRA_sample_Accession=CAGE@SAMD00004882
-|accession_numbers=CAGE;DRX007811;DRR008683;DRZ000108;DRZ001493
+|accession_numbers=CAGE;DRX007811;DRR008683;DRZ000108;DRZ001493;DRZ011458;DRZ012843
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr13:72441315..72441454,-!p1@DACH1!2.36!436.07!DACH1;;chr16:85932760..85932775,+!p1@IRF8!2.21!161.40!IRF8;;chr7:27192185..27192209,-!p1@HOXA3!2.21!161.40!HOXA3;;chr11:47400078..47400106,-!p1@SPI1!2.18!149.90!SPI1;;chr6:135502501..135502546,+!p1@MYB!2.15!166.08!MYB;;chr7:96654133..96654150,-!p1@DLX5!2.12!130.73!DLX5;;chr7:50344289..50344323,+!p1@IKZF1!1.98!94.54!IKZF1;;chr7:27205136..27205164,-!p1@HOXA9!1.95!89.00!HOXA9;;chr2:68592406..68592424,+!p1@PLEK!1.95!87.72!PLEK;;chr3:189349162..189349207,+!p2@TP63!1.94!86.45!TP63;;chr6:135502408..135502459,+!p2@MYB!1.83!76.23!MYB;;chr12:54694758..54694805,-!p1@NFE2!1.74!65.15!NFE2;;chr18:55102628..55102646,+!p2@ONECUT2!1.73!52.80!ONECUT2;;chr18:55102598..55102623,+!p1@ONECUT2!1.68!46.84!ONECUT2;;chr19:33793430..33793447,-!p1@CEBPA!1.67!185.67!CEBPA;;chr7:27205106..27205134,-!p2@HOXA9!1.63!41.31!HOXA9;;chr2:100759037..100759058,-!p2@AFF3!1.58!36.62!AFF3;;chr1:92951607..92951661,-!p1@GFI1!1.53!32.79!GFI1;;chr16:54320617..54320643,-!p3@IRX3!1.52!41.31!IRX3;;chr13:72441074..72441172,-!p2@DACH1!1.51!31.51!DACH1;;chr10:31288398..31288455,-!p2@ZNF438!1.50!35.35!ZNF438;;chr16:54320646..54320672,-!p2@IRX3!1.49!45.14!IRX3;;chr7:115670804..115670825,-!p1@TFEC!1.48!28.96!TFEC;;chr5:88178983..88179012,-!p1@MEF2C!1.45!203.13!MEF2C;;chr19:13213662..13213686,-!p1@LYL1!1.44!38.75!LYL1;;chr7:27224842..27224872,-!p1@HOXA11!1.43!25.98!HOXA11;;chr18:22932080..22932170,-!p1@ZNF521!1.42!104.76!ZNF521;;chr7:27213893..27213954,-!p1@HOXA10!1.40!24.27!HOXA10;;chr12:54785074..54785122,-!p2@ZNF385A!1.36!33.22!ZNF385A;;chr11:47399996..47400014,-!p4@SPI1!1.35!21.29!SPI1;;chr7:27196217..27196246,-!p2@HOXA7!1.32!20.01!HOXA7;;chr12:54694807..54694832,-!p3@NFE2!1.31!19.59!NFE2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.31!19.59!ZBED1;;chr3:18486354..18486377,-!p2@SATB1!1.30!23.42!SATB1;;chr2:100759010..100759035,-!p1@AFF3!1.30!19.16!AFF3;;chr16:54319010..54319041,-!p8@IRX3!1.29!18.31!IRX3;;chr18:77155922..77155939,+!p1@NFATC1!1.28!48.55!NFATC1;;chr12:54785054..54785072,-!p4@ZNF385A!1.28!20.44!ZNF385A;;chr6:29648890..29648944,-!p1@ZFP57!1.28!17.89!ZFP57;;chr7:96654026..96654061,-!p2@DLX5!1.28!17.89!DLX5;;chr6:15246200..15246214,+!p2@JARID2!1.27!48.55!JARID2;;chr7:27224795..27224840,-!p2@HOXA11!1.27!17.46!HOXA11;;chr2:145277640..145277771,-!p1@ZEB2!1.25!220.16!ZEB2;;chr5:321810..321877,+!p1@AHRR!1.25!53.23!AHRR;;chr16:54320675..54320715,-!p1@IRX3!1.25!36.20!IRX3;;chr20:50159198..50159299,-!p1@NFATC2!1.23!23.42!NFATC2;;chr11:47400062..47400077,-!p2@SPI1!1.21!15.33!SPI1;;chr18:22932004..22932021,-!p2@ZNF521!1.18!14.05!ZNF521;;chr21:34442439..34442455,+!p1@OLIG1!1.17!13.63!OLIG1;;chr6:135502472..135502489,+!p3@MYB!1.17!13.63!MYB;;chr11:65554528..65554546,+!p1@OVOL1!1.14!12.78!OVOL1;;chr11:47399947..47399961,-!p3@SPI1!1.13!12.35!SPI1;;chr1:3569072..3569093,+!p1@TP73!1.13!12.35!TP73;;chr5:88179195..88179224,-!p3@MEF2C!1.11!19.16!MEF2C;;chr7:27205043..27205050,-!p5@HOXA9!1.11!11.92!HOXA9;;chr7:50343634..50343717,+!p2@IKZF1!1.11!11.92!IKZF1;;chr7:50344251..50344288,+!p3@IKZF1!1.11!11.92!IKZF1;;chr6:144385698..144385742,-!p2@PLAGL1!1.09!13.63!PLAGL1;;chrX:101975643..101975683,+!p1@BHLHB9!1.08!24.70!BHLHB9;;chr1:92949331..92949377,-!p2@GFI1!1.08!11.07!GFI1;;chr21:34442540..34442560,+!p2@OLIG1!1.08!11.07!OLIG1;;chr5:88179017..88179046,-!p2@MEF2C!1.06!42.16!MEF2C;;chr6:45390002..45390023,+!p6@RUNX2!1.04!17.46!RUNX2;;chr11:2292226..2292270,-!p1@ASCL2!1.03!9.79!ASCL2;;chr11:47400032..47400043,-!p5@SPI1!1.03!9.79!SPI1;;chr8:57123815..57123867,-!p1@PLAG1!1.00!37.47!PLAG1;;chr7:137620684..137620711,-!p4@CREB3L2!1.00!8.94!CREB3L2;;chr2:102091566..102091581,-!p1@RFX8!1.00!8.94!RFX8;;chr13:72440901..72440968,-!p4@DACH1!1.00!8.94!DACH1;;chr21:36421535..36421610,-!p2@RUNX1!0.98!31.09!RUNX1;;chr19:13213704..13213726,-!p3@LYL1!0.98!11.50!LYL1;;chr18:22931979..22931992,-!p3@ZNF521!0.98!8.52!ZNF521;;chr20:42295745..42295765,+!p1@MYBL2!0.96!135.84!MYBL2;;chr13:41593425..41593480,-!p1@ELF1!0.96!53.66!ELF1;;chr11:47400045..47400060,-!p6@SPI1!0.96!8.09!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!0.96!8.09!ZNF385A;;chr4:87857491..87857519,+!p10@AFF1!0.95!11.07!AFF1;;chr14:45722360..45722415,-!p1@MIS18BP1!0.94!124.35!MIS18BP1;;chr4:87857474..87857489,+!p7@AFF1!0.94!13.63!AFF1;;chr1:156470515..156470542,-!p2@MEF2D!0.92!40.03!MEF2D;;chr6:34204973..34204990,+!p4@HMGA1!0.91!99.65!HMGA1;;chr10:51572408..51572454,+!p3@NCOA4!0.91!43.44!NCOA4;;chr6:45390025..45390076,+!p2@RUNX2!0.91!17.89!RUNX2;;chr1:25291475..25291511,-!p2@RUNX3!0.89!6.81!RUNX3;;chr19:45579725..45579743,-!p1@ZNF296!0.87!30.24!ZNF296;;chr10:51572339..51572376,+!p4@NCOA4!0.87!14.90!NCOA4;;chr12:54694653..54694672,-!p2@NFE2!0.87!6.39!NFE2;;chr19:13213954..13214021,-!p4@LYL1!0.87!6.39!LYL1;;chr2:68592394..68592405,+!p2@PLEK!0.87!6.39!PLEK;;chr3:189348969..189349018,+!p4@TP63!0.87!6.39!TP63;;chr3:129158715..129158766,-!p2@MBD4!0.86!63.88!MBD4;;chr6:45390269..45390298,+!p5@RUNX2!0.86!10.65!RUNX2;;chr7:128577972..128578047,+!p1@IRF5!0.85!9.79!IRF5;;chr5:88179230..88179270,-!p4@MEF2C!0.84!11.92!MEF2C;;chr5:88120151..88120177,-!p6@MEF2C!0.84!5.96!MEF2C;;chr7:137620650..137620677,-!p3@CREB3L2!0.84!5.96!CREB3L2;;chr2:100759060..100759073,-!p8@AFF3!0.84!5.96!AFF3;;chr10:31288370..31288393,-!p3@ZNF438!0.84!5.96!ZNF438;;chr10:22292591..22292606,-!p2@DNAJC1!0.83!9.79!DNAJC1;;chr7:99070499..99070523,+!p1@ZNF789!0.82!31.94!ZNF789;;chr21:47063625..47063658,+!p1@PCBP3!0.82!25.98!PCBP3;;chr19:926001..926046,+!p1@ARID3A!0.82!20.87!ARID3A;;chr6:42419649..42419673,-!p3@TRERF1!0.82!10.22!TRERF1;;chr6:45390300..45390335,+!p4@RUNX2!0.82!8.94!RUNX2;;chr14:75988771..75988826,+!p1@BATF!0.82!7.67!BATF;;chr21:34398234..34398250,+!p1@OLIG2!0.82!5.54!OLIG2;;chr7:27213872..27213886,-!p4@HOXA10!0.82!5.54!HOXA10;;chr7:96635178..96635181,+!p1@DLX6!0.82!5.54!DLX6;;chr16:54320158..54320200,-!p5@IRX3!0.81!8.09!IRX3;;chr2:43453734..43453751,-!p1@ZFP36L2!0.80!612.37!ZFP36L2;;chrX:101186981..101187030,-!p1@ZMAT1!0.79!17.89!ZMAT1;;chr2:100759076..100759088,-!p10@AFF3!0.79!5.11!AFF3;;chr7:96634878..96634900,+!p2@DLX6!0.79!5.11!DLX6;;chr10:51565239..51565263,+!p2@NCOA4!0.78!127.33!NCOA4;;chr8:145669791..145669834,-!p1@TONSL!0.78!15.33!TONSL;;chr2:200323414..200323455,-!p1@SATB2!0.78!11.50!SATB2;;chr2:200322654..200322707,-!p2@SATB2!0.78!7.67!SATB2;;chr6:15246261..15246312,+!p1@JARID2!0.77!131.16!JARID2;;chr7:86781916..86781963,+!p2@DMTF1!0.77!23.00!DMTF1;;chr19:926055..926068,+!p2@ARID3A!0.77!11.50!ARID3A;;chr11:128563948..128564003,+!p1@FLI1!0.76!63.88!FLI1;;chr2:60780607..60780624,-!p2@BCL11A!0.76!15.76!BCL11A;;chr7:86782094..86782108,+!p5@DMTF1!0.76!8.09!DMTF1;;chr7:96634908..96634923,+!p4@DLX6!0.75!4.68!DLX6;;chr10:135044190..135044229,+!p3@UTF1!0.75!4.68!UTF1;;chr13:72440880..72440895,-!p7@DACH1!0.75!4.68!DACH1;;chr13:72441259..72441268,-!p8@DACH1!0.75!4.68!DACH1;;chr1:3569101..3569115,+!p2@TP73!0.75!4.68!TP73;;chr1:92952473..92952489,-!p3@GFI1!0.75!4.68!GFI1;;chr4:87857538..87857549,+!p19@AFF1!0.75!4.68!AFF1;;chr6:45389791..45389832,+!p3@RUNX2!0.74!12.35!RUNX2;;chr2:60780753..60780800,-!p1@BCL11A!0.73!23.85!BCL11A;;chr8:71316428..71316459,-!p2@NCOA2!0.73!7.67!NCOA2;;chr5:88179518..88179569,-!p5@MEF2C!0.73!5.96!MEF2C;;chr4:106068026..106068084,+!p1@TET2!0.72!43.01!TET2;;chr19:21950332..21950356,-!p2@ZNF100!0.72!9.79!ZNF100;;chr11:19263160..19263176,-!p1@E2F8!0.72!5.11!E2F8;;chr13:41593392..41593403,-!p7@ELF1!0.72!4.26!ELF1;;chr7:35293685..35293718,-!p1@TBX20!0.72!4.26!TBX20;;chr7:96634850..96634874,+!p3@DLX6!0.72!4.26!DLX6;;chr7:96635448..96635470,+!p5@DLX6!0.72!4.26!DLX6;;chr2:28615716..28615733,+!p1@FOSL2!0.71!220.16!FOSL2;;chr9:117150254..117150271,-!p1@AKNA!0.71!12.35!AKNA;;chr20:45142154..45142227,-!p1@ZNF334!0.71!8.94!ZNF334;;chr3:71631151..71631194,-!p15@FOXP1!0.71!4.68!FOXP1;;chr2:239148671..239148686,-!p1@HES6!0.70!16.18!HES6;;chr20:42295713..42295738,+!p2@MYBL2!0.69!26.40!MYBL2;;chr7:149470641..149470694,-!p1@ZNF467!0.69!20.01!ZNF467;;chr7:99070527..99070542,+!p2@ZNF789!0.69!9.37!ZNF789;;chr7:64838786..64838809,+!p2@ZNF92!0.68!24.27!ZNF92;;chr3:71630980..71631110,-!p3@FOXP1!0.68!14.90!FOXP1;;chr17:7388010..7388017,-!p5@ZBTB4!0.68!6.81!ZBTB4;;chr21:40177845..40177863,+!p1@ETS2!0.67!250.82!ETS2;;chr7:113726357..113726443,+!p1@FOXP2!0.67!6.81!FOXP2;;chrX:131623932..131623964,-!p7@MBNL3!0.67!5.54!MBNL3;;chrX:129244454..129244488,-!p1@ELF4!0.66!29.81!ELF4;;chr16:68119324..68119364,+!p1@NFATC3!0.66!18.31!NFATC3;;chr3:18466787..18466839,-!p1@SATB1!0.65!17.89!SATB1;;chr6:20402102..20402152,+!p1@E2F3!0.65!16.18!E2F3;;chr7:99156393..99156433,+!p6@ZNF655!0.65!8.52!ZNF655;;chr6:45389835..45389861,+!p7@RUNX2!0.65!5.96!RUNX2;;chr17:40440481..40440550,+!p1@STAT5A!0.64!28.53!STAT5A;;chr5:158526917..158526932,-!p1@EBF1!0.64!9.37!EBF1;;chr2:208031943..208031978,-!p5@KLF7!0.64!4.68!KLF7;;chr2:100758991..100759009,-!p3@AFF3!0.64!3.41!AFF3;;chr3:63953435..63953499,+!p1@ATXN7!0.64!3.41!ATXN7;;chr6:45389985..45389996,+!p18@RUNX2!0.64!3.41!RUNX2;;chr7:27205089..27205096,-!p4@HOXA9!0.64!3.41!HOXA9;;chr7:96635277..96635301,+!p7@DLX6!0.64!3.41!DLX6;;chr12:54694738..54694749,-!p5@NFE2!0.64!3.41!NFE2;;chr16:54320280..54320291,-!p9@IRX3!0.64!3.41!IRX3;;chr18:22805268..22805280,-!p8@ZNF521!0.64!3.41!ZNF521;;chr18:55102806..55102847,+!p3@ONECUT2!0.64!3.41!ONECUT2;;chr1:3569135..3569150,+!p3@TP73!0.64!3.41!TP73;;chr1:40367668..40367684,-!p2@MYCL1!0.64!3.41!MYCL1;;chr12:2986275..2986363,-!p1@FOXM1!0.63!38.33!FOXM1;;chr17:41277372..41277418,-!p1@BRCA1!0.63!13.63!BRCA1;;chr11:130184470..130184533,-!p2@ZBTB44!0.63!10.22!ZBTB44;;chr19:20011775..20011800,+!p2@ZNF93!0.63!6.39!ZNF93;;chrX:131622958..131622978,-!p3@MBNL3!0.63!4.26!MBNL3;;chr20:46130619..46130664,+!p1@NCOA3!0.62!102.20!NCOA3;;chr10:94449703..94449718,+!p1@HHEX!0.62!14.05!HHEX;;chr1:23857698..23857733,-!p1@E2F2!0.62!6.39!E2F2;;chr14:45722335..45722348,-!p3@MIS18BP1!0.62!5.96!MIS18BP1;;chr2:145282041..145282092,-!p8@ZEB2!0.62!5.11!ZEB2;;chr1:41157641..41157665,+!p7@NFYC!0.62!4.26!NFYC;;chr6:15246217..15246228,+!p3@JARID2!0.61!5.96!JARID2;;chr4:811049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@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aNOMO-1.CNhs13050.10764-110E8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aNOMO-1.CNhs13050.10764-110E8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aNOMO-1.CNhs13050.10764-110E8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aNOMO-1.CNhs13050.10764-110E8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aNOMO-1.CNhs13050.10764-110E8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10764-110E8
 |is_a=EFO:0002091;;FF:0000210;;FF:0101883
 |is_obsolete=
 |library_id=CNhs13050
+|library_id_phase_based=2:CNhs13050
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10764
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10764
 |name=acute myeloid leukemia (FAB M5) cell line:NOMO-1
 |namespace=FANTOM5
@@ Line 49: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13050,LSID1000,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 63: / Line 75: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=110E8
+|rna_tube_id=1.10E+10
 |rna_weight_ug=85.1805
 |sample_age=unknown
@@ Line 88: / Line 100: @@
 |top_motifs=RXR{A,B,G}_{NR1H2,PPAR}dimers:1.88410613977;MYB:1.8024348309;E2F1..5:1.50662764671;FOXA2:1.37659039163;MTF1:1.32768983287;POU5F1:1.31348507274;HOX{A6,A7,B6,B7}:1.26094247399;NANOG:1.2151302696;POU2F1..3:1.14858106798;YY1:0.952615884926;NFY{A,B,C}:0.931512065545;BREu{core}:0.832220757348;SPIB:0.829873434172;TOPORS:0.761874632397;SPI1:0.742520648454;FOXP1:0.720436852554;OCT4_SOX2{dimer}:0.717655386318;PITX1..3:0.636551990338;DMAP1_NCOR{1,2}_SMARC:0.630889218223;ELK1,4_GABP{A,B1}:0.614593796292;ETS1,2:0.556008898383;CRX:0.53922716774;ELF1,2,4:0.537423027995;IKZF2:0.518356580762;TFDP1:0.507628327996;HAND1,2:0.480661566526;CUX2:0.455717122646;NFIL3:0.451719673798;NKX3-1:0.432449488276;EN1,2:0.422324446744;VSX1,2:0.407720848006;FOXN1:0.394887305052;POU1F1:0.336802856311;GATA6:0.331911879785;SREBF1,2:0.289043537015;NKX2-3_NKX2-5:0.283880566199;PRRX1,2:0.274414975881;PAX3,7:0.253869626846;CEBPA,B_DDIT3:0.252994027499;FOXP3:0.241265098361;ZNF143:0.236980609822;MYOD1:0.195849742402;NR5A1,2:0.193038181551;DBP:0.19164071582;RUNX1..3:0.191260248455;HLF:0.139402134252;HNF4A_NR2F1,2:0.136641464994;RXRA_VDR{dimer}:0.133385388347;FOXQ1:0.132512886126;PAX2:0.0910226778088;HOX{A4,D4}:0.0840197023242;NRF1:0.0621820849005;NKX2-1,4:0.061160903784;CREB1:0.0592565777416;CDX1,2,4:0.0337514586589;AHR_ARNT_ARNT2:0.017928884621;GFI1:0.015414205315;TBP:-0.0277668878305;TLX2:-0.0396683067568;ZBTB16:-0.051121728477;RORA:-0.0517577272538;TGIF1:-0.115159376232;HOX{A5,B5}:-0.120912407735;POU3F1..4:-0.125112588206;PPARG:-0.140868286304;NKX2-2,8:-0.142248715556;ATF4:-0.148826338249;PBX1:-0.152246625091;AIRE:-0.159797357147;EP300:-0.163870548624;NR6A1:-0.16513433013;SOX17:-0.169045275773;POU6F1:-0.17647991341;PRDM1:-0.177989121139;STAT1,3:-0.186143611236;ESRRA:-0.201866605173;SP1:-0.202178092159;PAX6:-0.205076706925;AR:-0.210459911915;PAX4:-0.222824058947;IRF1,2:-0.229238401135;ZNF423:-0.247131997547;SOX{8,9,10}:-0.249047178027;NFE2:-0.254625136129;HMGA1,2:-0.255624751778;ALX1:-0.26345092961;REST:-0.266734034682;ATF5_CREB3:-0.277571139459;HBP1_HMGB_SSRP1_UBTF:-0.278878640752;TEF:-0.283747124908;HNF1A:-0.294764064336;HOXA9_MEIS1:-0.299275919346;NFKB1_REL_RELA:-0.309894505811;XCPE1{core}:-0.323366569002;IRF7:-0.330368209452;MTE{core}:-0.333970856793;ZNF148:-0.362753721308;bHLH_family:-0.371294772115;MYFfamily:-0.383496367227;SNAI1..3:-0.389586271643;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.397771021078;NANOG{mouse}:-0.398551042732;ZEB1:-0.399401089074;FOS_FOS{B,L1}_JUN{B,D}:-0.414845043797;NKX3-2:-0.420823622471;PAX8:-0.423002062468;NHLH1,2:-0.448176634863;RFX2..5_RFXANK_RFXAP:-0.448564558022;ESR1:-0.460442774449;KLF4:-0.469224125693;GCM1,2:-0.48545754911;MZF1:-0.493330140135;LMO2:-0.507882917549;GATA4:-0.521252187033;MED-1{core}:-0.523878056957;TP53:-0.54735973237;FOXO1,3,4:-0.587577155798;MEF2{A,B,C,D}:-0.594224536986;FOSL2:-0.59483507782;BACH2:-0.599084422973;PDX1:-0.605810290407;FOX{F1,F2,J1}:-0.627431350808;PAX5:-0.630195291911;ARID5B:-0.637793736987;GFI1B:-0.643587927633;SOX5:-0.648875905372;RXR{A,B,G}:-0.655156856848;HSF1,2:-0.678591494507;MYBL2:-0.679124952438;HIC1:-0.683258769117;NFIX:-0.704325000144;XBP1:-0.706912645613;T:-0.714343260014;ZNF238:-0.719625754853;ZFP161:-0.722487919006;GTF2A1,2:-0.741666321613;HIF1A:-0.743465423929;STAT5{A,B}:-0.745920039277;GZF1:-0.755580747454;PAX1,9:-0.761898408988;EGR1..3:-0.764036906321;NFE2L2:-0.801646271507;ATF2:-0.803502110968;CDC5L:-0.809331963102;NKX6-1,2:-0.819468277743;ONECUT1,2:-0.827393307896;UFEwm:-0.830308909577;HES1:-0.830330250588;TFAP4:-0.842950100989;TFAP2{A,C}:-0.854851322455;RBPJ:-0.85488501153;ADNP_IRX_SIX_ZHX:-0.873039434727;MAFB:-0.875294732471;GTF2I:-0.888762691652;LEF1_TCF7_TCF7L1,2:-0.900207251025;NFE2L1:-0.911101444801;TFAP2B:-0.915757255406;ZNF384:-0.920099401146;FOXL1:-0.921648634383;BPTF:-0.930556369511;NR1H4:-0.944279266894;HMX1:-0.952791396134;SRF:-0.974045564037;RFX1:-1.02267964836;ZIC1..3:-1.02473799043;SMAD1..7,9:-1.02917880472;LHX3,4:-1.05166199408;TAL1_TCF{3,4,12}:-1.10292297993;EBF1:-1.12567613803;RREB1:-1.13282688099;EVI1:-1.14975124764;IKZF1:-1.15889813681;PATZ1:-1.18359768448;FOX{I1,J2}:-1.18903488846;STAT2,4,6:-1.19076553679;TFCP2:-1.19233849854;FOXD3:-1.20196433549;TLX1..3_NFIC{dimer}:-1.21262617753;SOX2:-1.21639302551;FOXM1:-1.27199353689;TEAD1:-1.29194953288;SPZ1:-1.29961538598;FOX{D1,D2}:-1.30209583367;JUN:-1.30430826595;NFATC1..3:-1.33454378043;MAZ:-1.37100109737;GLI1..3:-1.37132327652;ATF6:-1.45665287296;ALX4:-1.52435450717;TBX4,5:-1.5424170329;ZBTB6:-1.69612298263;NR3C1:-2.03273776278
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10764-110E8;search_select_hide=table117:FF:10764-110E8
 }}

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FF:10764-110E8: Difference between revisions

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Latest revision as of 15:03, 3 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0