FF:11799-124C8: Difference between revisions

Latest revision as of 18:21, 4 June 2020

Name:	CD14+CD16- Monocytes, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13216
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	23
cell type	monocyte
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	27
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004679

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13216		CAGE		DRX008166		DRR009038

Accession ID Hg19

Library id		BAM		CTSS
CNhs13216		DRZ000463		DRZ001848

Accession ID Hg38

Library id		BAM		CTSS
CNhs13216		DRZ011813		DRZ013198

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.135
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.162
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.396
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.114
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.112
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.162
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.162
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.501
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.162
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.162
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.0608
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.461
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.282
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.244
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.569
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.204
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.243
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0306
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.204
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.0223
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0585
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.815
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.924
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.544
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.541
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.704
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.393
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.398
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.567
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.243
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.404
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.675
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.422
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.312
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	1.013
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0818
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.305
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.846
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.56
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.492
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.114
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.114
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0668
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.162
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.279
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.243
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13216

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.09245e-10
MA0003.1	MA0003.1	0.111
MA0004.1	MA0004.1	0.853
MA0006.1	MA0006.1	0.854
MA0007.1	MA0007.1	0.77
MA0009.1	MA0009.1	0.21
MA0014.1	MA0014.1	0.642
MA0017.1	MA0017.1	0.0107
MA0018.2	MA0018.2	0.156
MA0019.1	MA0019.1	0.282
MA0024.1	MA0024.1	0.00126
MA0025.1	MA0025.1	0.00344
MA0027.1	MA0027.1	0.978
MA0028.1	MA0028.1	0.942
MA0029.1	MA0029.1	0.169
MA0030.1	MA0030.1	0.326
MA0031.1	MA0031.1	0.805
MA0035.2	MA0035.2	0.317
MA0038.1	MA0038.1	0.109
MA0039.2	MA0039.2	0.644
MA0040.1	MA0040.1	0.153
MA0041.1	MA0041.1	0.589
MA0042.1	MA0042.1	0.298
MA0043.1	MA0043.1	7.75373e-6
MA0046.1	MA0046.1	0.247
MA0047.2	MA0047.2	0.206
MA0048.1	MA0048.1	0.881
MA0050.1	MA0050.1	6.18011e-9
MA0051.1	MA0051.1	4.58173e-4
MA0052.1	MA0052.1	0.661
MA0055.1	MA0055.1	0.714
MA0057.1	MA0057.1	0.607
MA0058.1	MA0058.1	0.685
MA0059.1	MA0059.1	0.617
MA0060.1	MA0060.1	2.46086e-9
MA0061.1	MA0061.1	2.99399e-5
MA0062.2	MA0062.2	0.00651
MA0065.2	MA0065.2	0.0135
MA0066.1	MA0066.1	0.0624
MA0067.1	MA0067.1	5.84643e-4
MA0068.1	MA0068.1	0.928
MA0069.1	MA0069.1	0.891
MA0070.1	MA0070.1	0.00651
MA0071.1	MA0071.1	0.241
MA0072.1	MA0072.1	0.897
MA0073.1	MA0073.1	0.415
MA0074.1	MA0074.1	0.378
MA0076.1	MA0076.1	0.829
MA0077.1	MA0077.1	0.119
MA0078.1	MA0078.1	0.865
MA0079.2	MA0079.2	0.594
MA0080.2	MA0080.2	6.54416e-17
MA0081.1	MA0081.1	1.04644e-4
MA0083.1	MA0083.1	0.323
MA0084.1	MA0084.1	0.615
MA0087.1	MA0087.1	0.492
MA0088.1	MA0088.1	0.621
MA0090.1	MA0090.1	0.0512
MA0091.1	MA0091.1	0.467
MA0092.1	MA0092.1	0.449
MA0093.1	MA0093.1	0.962
MA0099.2	MA0099.2	1.38051e-9
MA0100.1	MA0100.1	0.975
MA0101.1	MA0101.1	3.07648e-4
MA0102.2	MA0102.2	8.92754e-12
MA0103.1	MA0103.1	0.439
MA0104.2	MA0104.2	0.681
MA0105.1	MA0105.1	1.03562e-7
MA0106.1	MA0106.1	0.448
MA0107.1	MA0107.1	6.86641e-5
MA0108.2	MA0108.2	6.29609e-8
MA0111.1	MA0111.1	0.397
MA0112.2	MA0112.2	4.39556e-4
MA0113.1	MA0113.1	0.998
MA0114.1	MA0114.1	0.129
MA0115.1	MA0115.1	0.964
MA0116.1	MA0116.1	1.25275e-4
MA0117.1	MA0117.1	0.225
MA0119.1	MA0119.1	0.364
MA0122.1	MA0122.1	0.827
MA0124.1	MA0124.1	0.345
MA0125.1	MA0125.1	0.183
MA0131.1	MA0131.1	0.985
MA0135.1	MA0135.1	0.337
MA0136.1	MA0136.1	2.62167e-18
MA0137.2	MA0137.2	0.567
MA0138.2	MA0138.2	0.9
MA0139.1	MA0139.1	0.737
MA0140.1	MA0140.1	0.33
MA0141.1	MA0141.1	0.0663
MA0142.1	MA0142.1	0.438
MA0143.1	MA0143.1	0.484
MA0144.1	MA0144.1	0.215
MA0145.1	MA0145.1	0.228
MA0146.1	MA0146.1	0.0395
MA0147.1	MA0147.1	0.773
MA0148.1	MA0148.1	0.956
MA0149.1	MA0149.1	0.0891
MA0150.1	MA0150.1	1.36404e-6
MA0152.1	MA0152.1	0.213
MA0153.1	MA0153.1	0.0183
MA0154.1	MA0154.1	0.00171
MA0155.1	MA0155.1	0.8
MA0156.1	MA0156.1	5.50106e-11
MA0157.1	MA0157.1	0.294
MA0159.1	MA0159.1	0.0397
MA0160.1	MA0160.1	0.0353
MA0162.1	MA0162.1	0.429
MA0163.1	MA0163.1	4.03478e-9
MA0164.1	MA0164.1	0.899
MA0258.1	MA0258.1	0.0111
MA0259.1	MA0259.1	0.744

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13216

Novel motif	Logo	P-value
1	1	0.105
10	10	0.0189
100	100	0.979
101	101	0.385
102	102	0.575
103	103	0.214
104	104	0.794
105	105	0.266
106	106	0.00483
107	107	0.354
108	108	0.706
109	109	0.0652
11	11	0.116
110	110	0.288
111	111	0.027
112	112	0.256
113	113	0.533
114	114	0.0112
115	115	0.125
116	116	0.757
117	117	0.0353
118	118	0.1
119	119	0.29
12	12	0.323
120	120	0.66
121	121	0.871
122	122	0.801
123	123	0.0291
124	124	0.827
125	125	0.11
126	126	0.289
127	127	0.258
128	128	0.0372
129	129	0.796
13	13	0.101
130	130	0.202
131	131	0.839
132	132	0.0605
133	133	0.972
134	134	0.478
135	135	0.0698
136	136	0.879
137	137	1.80623e-4
138	138	0.136
139	139	0.0377
14	14	0.289
140	140	0.151
141	141	0.332
142	142	0.974
143	143	0.0435
144	144	0.705
145	145	0.498
146	146	0.814
147	147	0.289
148	148	0.00641
149	149	0.654
15	15	0.0999
150	150	0.61
151	151	0.293
152	152	0.284
153	153	0.69
154	154	0.649
155	155	0.283
156	156	0.918
157	157	0.755
158	158	0.116
159	159	0.831
16	16	0.381
160	160	0.371
161	161	0.398
162	162	0.445
163	163	0.839
164	164	0.0973
165	165	0.111
166	166	0.756
167	167	0.181
168	168	0.345
169	169	0.00866
17	17	0.28
18	18	0.164
19	19	0.2
2	2	0.993
20	20	0.604
21	21	0.512
22	22	0.219
23	23	0.125
24	24	0.192
25	25	0.173
26	26	0.0292
27	27	0.485
28	28	0.548
29	29	0.0701
3	3	0.0637
30	30	0.52
31	31	0.667
32	32	0.79
33	33	0.194
34	34	0.486
35	35	0.136
36	36	0.0476
37	37	0.0641
38	38	0.427
39	39	0.734
4	4	0.885
40	40	0.103
41	41	0.0283
42	42	0.327
43	43	0.0786
44	44	0.774
45	45	0.859
46	46	0.151
47	47	0.388
48	48	0.365
49	49	0.118
5	5	0.106
50	50	0.986
51	51	0.317
52	52	0.343
53	53	0.22
54	54	0.374
55	55	0.505
56	56	0.741
57	57	0.656
58	58	0.081
59	59	0.136
6	6	0.59
60	60	0.0418
61	61	0.248
62	62	0.0293
63	63	0.473
64	64	0.317
65	65	0.216
66	66	0.127
67	67	0.472
68	68	0.774
69	69	0.719
7	7	0.136
70	70	0.0169
71	71	0.0214
72	72	0.289
73	73	0.139
74	74	0.0497
75	75	0.0702
76	76	0.222
77	77	0.464
78	78	0.149
79	79	0.0392
8	8	0.359
80	80	0.26
81	81	0.255
82	82	0.0733
83	83	0.536
84	84	0.581
85	85	0.0276
86	86	0.105
87	87	0.234
88	88	0.591
89	89	0.349
9	9	0.289
90	90	0.0405
91	91	0.35
92	92	0.336
93	93	0.486
94	94	0.0308
95	95	0.119
96	96	0.401
97	97	0.968
98	98	0.156
99	99	0.0481

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13216

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011111 human CD14-positive CD16-negative Monocytes sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011111 (human CD14-positive CD16-negative Monocytes sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008059
+|DRA_sample_Accession=CAGE@SAMD00004679
-|accession_numbers=CAGE;DRX008166;DRR009038;DRZ000463;DRZ001848
+|accession_numbers=CAGE;DRX008166;DRR009038;DRZ000463;DRZ001848;DRZ011813;DRZ013198
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.70!499.19!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.70!497.99!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.28!189.52!ZNF385A;;chr16:85932760..85932775,+!p1@IRF8!2.16!142.52!IRF8;;chr7:115670804..115670825,-!p1@TFEC!2.01!100.47!TFEC;;chr14:75745523..75745537,+!p1@FOS!1.94!9620.93!FOS;;chr12:54694758..54694805,-!p1@NFE2!1.83!78.99!NFE2;;chr11:47400062..47400077,-!p2@SPI1!1.83!66.53!SPI1;;chr7:50344289..50344323,+!p1@IKZF1!1.83!66.08!IKZF1;;chr21:34442439..34442455,+!p1@OLIG1!1.78!59.32!OLIG1;;chr11:47399947..47399961,-!p3@SPI1!1.71!50.76!SPI1;;chr10:51572408..51572454,+!p3@NCOA4!1.65!243.89!NCOA4;;chr2:145277640..145277771,-!p1@ZEB2!1.60!490.93!ZEB2;;chr2:70142232..70142251,+!p1@MXD1!1.60!208.90!MXD1;;chr11:47399996..47400014,-!p4@SPI1!1.60!39.20!SPI1;;chr19:45971246..45971265,+!p1@FOSB!1.53!580.28!FOSB;;chr5:88178983..88179012,-!p1@MEF2C!1.48!218.51!MEF2C;;chr20:39317868..39317884,-!p1@MAFB!1.44!305.01!MAFB;;chr11:47400032..47400043,-!p5@SPI1!1.44!26.73!SPI1;;chr2:157189180..157189290,-!p1@NR4A2!1.43!129.60!NR4A2;;chr6:144385698..144385742,-!p2@PLAGL1!1.42!30.64!PLAGL1;;chr14:75746722..75746777,+!p2@FOS!1.40!31.09!FOS;;chr11:47400045..47400060,-!p6@SPI1!1.40!24.33!SPI1;;chr21:34442540..34442560,+!p2@OLIG1!1.39!23.28!OLIG1;;chr2:68592394..68592405,+!p2@PLEK!1.37!22.38!PLEK;;chr9:110252035..110252057,-!p1@KLF4!1.35!328.29!KLF4;;chr19:13213662..13213686,-!p1@LYL1!1.34!30.34!LYL1;;chr7:128577972..128578047,+!p1@IRF5!1.33!31.54!IRF5;;chr11:128563948..128564003,+!p1@FLI1!1.27!208.15!FLI1;;chr19:12902289..12902307,+!p1@JUNB!1.26!3853.24!JUNB;;chr12:52445218..52445237,+!p1@NR4A1!1.26!209.95!NR4A1;;chr12:54778351..54778378,-!p6@ZNF385A!1.25!16.82!ZNF385A;;chr19:33793430..33793447,-!p1@CEBPA!1.24!67.73!CEBPA;;chr9:110250697..110250738,-!p2@KLF4!1.24!19.37!KLF4;;chr5:176735063..176735088,-!p2@MXD3!1.24!16.22!MXD3;;chr10:51572339..51572376,+!p4@NCOA4!1.22!34.84!NCOA4;;chr12:72056800..72056834,+!p1@THAP2!1.21!20.27!THAP2;;chr8:48650715..48650735,-!p1@CEBPD!1.20!1835.76!CEBPD;;chr4:106068026..106068084,+!p1@TET2!1.19!128.55!TET2;;chrY:21906594..21906622,-!p1@KDM5D!1.19!14.42!KDM5D;;chr14:35872962..35873025,-!p3@NFKBIA!1.18!35.89!NFKBIA;;chr7:50343634..50343717,+!p2@IKZF1!1.18!14.12!IKZF1;;chr7:28725740..28725778,+!p1@CREB5!1.16!120.14!CREB5;;chr17:38497662..38497713,+!p4@RARA!1.16!15.62!RARA;;chr7:149470641..149470694,-!p1@ZNF467!1.15!59.32!ZNF467;;chrX:106960180..106960197,-!p2@TSC22D3!1.15!50.01!TSC22D3;;chr13:41593425..41593480,-!p1@ELF1!1.14!80.95!ELF1;;chr9:117150254..117150271,-!p1@AKNA!1.11!32.29!AKNA;;chr12:54694807..54694832,-!p3@NFE2!1.11!12.01!NFE2;;chr19:42636586..42636607,-!p1@POU2F2!1.10!32.59!POU2F2;;chr7:28725715..28725727,+!p3@CREB5!1.10!13.82!CREB5;;chr6:44233252..44233296,-!p1@NFKBIE!1.09!111.88!NFKBIE;;chr21:36421535..36421610,-!p2@RUNX1!1.09!41.00!RUNX1;;chr20:48807456..48807475,+!p3@CEBPB!1.09!22.08!CEBPB;;chr5:88179017..88179046,-!p2@MEF2C!1.08!44.30!MEF2C;;chr10:94449703..94449718,+!p1@HHEX!1.08!42.95!HHEX;;chr2:28618532..28618610,+!p4@FOSL2!1.07!18.47!FOSL2;;chr2:208031943..208031978,-!p5@KLF7!1.07!14.57!KLF7;;chr6:391743..391759,+!p1@IRF4!1.07!10.81!IRF4;;chr20:48807430..48807439,+!p8@CEBPB!1.06!15.92!CEBPB;;chr14:35873947..35873965,-!p1@NFKBIA!1.05!659.28!NFKBIA;;chr2:61108695..61108753,+!p1@REL!1.05!71.48!REL;;chr14:35872453..35872485,-!p2@NFKBIA!1.05!25.68!NFKBIA;;chr14:75988771..75988826,+!p1@BATF!1.04!13.52!BATF;;chr19:36391434..36391450,-!p1@NFKBID!1.03!19.22!NFKBID;;chr2:145271342..145271377,-!p5@ZEB2!1.03!9.76!ZEB2;;chrX:106960285..106960299,-!p1@TSC22D3!1.01!253.80!TSC22D3;;chr21:30671690..30671762,+!p2@BACH1!1.01!32.14!BACH1;;chr19:45252008..45252024,+!p2@BCL3!1.01!31.39!BCL3;;chr6:15246200..15246214,+!p2@JARID2!1.01!25.98!JARID2;;chr1:40367530..40367597,-!p1@MYCL1!1.01!17.12!MYCL1;;chr3:101568349..101568365,+!p1@NFKBIZ!1.00!476.66!NFKBIZ;;chr5:131826457..131826514,-!p1@IRF1!1.00!358.92!IRF1;;chr2:231090433..231090469,+!p1@SP140!1.00!9.01!SP140;;chr10:31288398..31288455,-!p2@ZNF438!0.99!10.36!ZNF438;;chr8:48650697..48650708,-!p2@CEBPD!0.98!67.28!CEBPD;;chr3:39195075..39195088,-!p1@CSRNP1!0.98!55.57!CSRNP1;;chr9:110251836..110251887,-!p4@KLF4!0.98!11.41!KLF4;;chr14:75747296..75747329,+!p4@FOS!0.98!8.56!FOS;;chr16:88752889..88752921,-!p1@SNAI3!0.97!9.76!SNAI3;;chr20:56195474..56195506,-!p1@ZBP1!0.97!8.41!ZBP1;;chr21:30671235..30671253,+!p1@BACH1!0.96!106.33!BACH1;;chr10:3827371..3827386,-!p2@KLF6!0.96!70.28!KLF6;;chr2:208394817..208394834,+!p3@CREB1!0.96!33.64!CREB1;;chr10:135044190..135044229,+!p3@UTF1!0.96!8.11!UTF1;;chr14:75747250..75747267,+!p5@FOS!0.96!8.11!FOS;;chr16:31885093..31885165,+!p1@ZNF267!0.95!123.90!ZNF267;;chr4:185395633..185395651,-!p2@IRF2!0.95!13.07!IRF2;;chr1:158979872..158979898,+!p3@IFI16!0.94!24.48!IFI16;;chr2:28615716..28615733,+!p1@FOSL2!0.93!369.59!FOSL2;;chr10:104154246..104154347,+!p3@NFKB2!0.93!47.31!NFKB2;;chr2:8822176..8822196,+!p1@ID2!0.92!1067.31!ID2;;chr9:110252074..110252079,-!p3@KLF4!0.92!12.31!KLF4;;chr5:142782823..142782854,-!p3@NR3C1!0.92!10.51!NR3C1;;chr12:72056773..72056796,+!p3@THAP2!0.92!9.61!THAP2;;chrY:2803415..2803468,+!p1@ZFY!0.92!7.36!ZFY;;chr19:16435625..16435682,+!p1@KLF2!0.91!237.73!KLF2;;chr7:150974206..150974255,-!p1@SMARCD3!0.91!46.40!SMARCD3;;chr2:238600933..238600985,+!p3@LRRFIP1!0.91!40.70!LRRFIP1;;chr2:145277882..145277967,-!p3@ZEB2!0.91!12.77!ZEB2;;chr8:71316428..71316459,-!p2@NCOA2!0.91!12.31!NCOA2;;chr19:45251395..45251432,+!p8@BCL3!0.91!7.21!BCL3;;chr11:47399920..47399931,-!p7@SPI1!0.91!7.21!SPI1;;chr19:13213954..13214021,-!p4@LYL1!0.91!7.06!LYL1;;chr7:137620684..137620711,-!p4@CREB3L2!0.90!6.91!CREB3L2;;chr20:48807351..48807384,+!p1@CEBPB!0.89!724.45!CEBPB;;chr17:38498594..38498661,+!p2@RARA!0.89!23.73!RARA;;chr12:54694653..54694672,-!p2@NFE2!0.89!6.76!NFE2;;chrX:129244454..129244488,-!p1@ELF4!0.88!50.31!ELF4;;chr4:185395590..185395627,-!p3@IRF2!0.88!8.26!IRF2;;chr6:15246741..15246765,+!p9@JARID2!0.88!6.61!JARID2;;chr4:38665769..38665801,+!p2@KLF3!0.87!61.27!KLF3;;chr1:156470515..156470542,-!p2@MEF2D!0.87!35.14!MEF2D;;chr17:38498402..38498445,+!p3@RARA!0.86!23.88!RARA;;chr2:157198916..157198978,-!p2@NR4A2!0.86!23.13!NR4A2;;chr14:75746340..75746368,+!p3@FOS!0.86!6.31!FOS;;chr9:117160738..117160782,-!p2@AKNA!0.85!26.43!AKNA;;chr6:12011943..12012015,+!p2@HIVEP1!0.85!20.57!HIVEP1;;chr10:35416142..35416169,+!p3@CREM!0.85!16.97!CREM;;chr19:45250948..45250998,+!p3@BCL3!0.85!16.07!BCL3;;chr9:102584262..102584276,+!p1@NR4A3!0.85!14.12!NR4A3;;chr18:3448455..3448480,+!p5@TGIF1!0.85!11.71!TGIF1;;chr2:70167296..70167306,+!p3@MXD1!0.85!9.61!MXD1;;chr12:54694738..54694749,-!p5@NFE2!0.85!6.16!NFE2;;chr1:25256439..25256476,-!p3@RUNX3!0.85!6.01!RUNX3;;chr2:97202480..97202499,+!p1@ARID5A!0.84!64.43!ARID5A;;chr6:106534192..106534224,+!p1@PRDM1!0.84!17.72!PRDM1;;chr19:13213704..13213726,-!p3@LYL1!0.84!8.11!LYL1;;chr12:72056749..72056767,+!p6@THAP2!0.84!6.61!THAP2;;chr9:110250629..110250642,-!p7@KLF4!0.84!5.86!KLF4;;chr10:104155480..104155534,+!p2@NFKB2!0.83!39.65!NFKB2;;chr9:3525727..3525828,-!p2@RFX3!0.83!15.62!RFX3;;chr1:25256756..25256774,-!p1@RUNX3!0.83!11.41!RUNX3;;chr13:41593392..41593403,-!p7@ELF1!0.83!5.71!ELF1;;chr6:15246261..15246312,+!p1@JARID2!0.82!145.52!JARID2;;chr17:40440481..40440550,+!p1@STAT5A!0.82!43.55!STAT5A;;chr9:137217986..137218049,+!p3@RXRA!0.82!17.12!RXRA;;chr7:149470540..149470596,-!p2@ZNF467!0.82!7.66!ZNF467;;chr7:50344251..50344288,+!p3@IKZF1!0.82!5.56!IKZF1;;chr2:70142189..70142223,+!p2@MXD1!0.81!41.90!MXD1;;chr10:94449675..94449694,+!p2@HHEX!0.81!15.62!HHEX;;chr19:50432132..50432217,+!p2@ATF5!0.81!6.61!ATF5;;chr14:75746781..75746799,+!p6@FOS!0.81!5.41!FOS;;chrX:129244430..129244442,-!p5@ELF4!0.81!5.41!ELF4;;chr11:615942..615957,-!p1@IRF7!0.80!54.66!IRF7;;chr3:187463179..187463201,-!p2@BCL6!0.80!23.58!BCL6;;chrX:106960221..106960236,-!p3@TSC22D3!0.80!15.77!TSC22D3;;chr1:221052776..221052799,+!p1@HLX!0.80!10.06!HLX;;chr20:48807615..48807644,+!p6@CEBPB!0.80!9.31!CEBPB;;chr5:88179195..88179224,-!p3@MEF2C!0.80!8.71!MEF2C;;chr7:17338324..17338341,+!p3@AHR!0.79!18.62!AHR;;chr16:3313791..3313834,+!p2@ZNF263!0.79!12.16!ZNF263;;chr4:106066730..106066754,+!p6@TET2!0.79!5.11!TET2;;chr3:187463248..187463264,-!p1@BCL6!0.78!116.99!BCL6;;chr1:158979851..158979865,+!p5@IFI16!0.78!11.71!IFI16;;chr2:208031542..208031595,-!p2@KLF7!0.77!38.14!KLF7;;chr3:101546827..101546847,+!p2@NFKBIZ!0.77!7.06!NFKBIZ;;chr1:221052733..221052749,+!p2@HLX!0.77!6.46!HLX;;chr13:41593405..41593416,-!p9@ELF1!0.77!4.96!ELF1;;chr21:40177892..40177903,+!p2@ETS2!0.76!20.57!ETS2;;chr2:60780607..60780624,-!p2@BCL11A!0.76!15.92!BCL11A;;chr3:187463220..187463232,-!p3@BCL6!0.76!15.32!BCL6;;chr20:48807875..48807982,+!p2@CEBPB!0.75!111.88!CEBPB;;chr2:174828545..174828644,-!p1@SP3!0.75!79.29!SP3;;chr10:43932296..43932360,+!p1@ZNF487P!0.75!10.21!ZNF487P;;chr22:21771656..21771662,+!p1@HIC2!0.75!4.66!HIC2;;chr2:231084659..231084721,-!p1@SP110!0.74!116.54!SP110;;chr8:116681194..116681214,-!p1@TRPS1!0.74!46.40!TRPS1;;chr3:39195037..39195069,-!p2@CSRNP1!0.74!30.64!CSRNP1;;chr2:145275162..145275202,-!p2@ZEB2!0.74!29.58!ZEB2;;chr14:65569101..65569119,-!p3@MAX!0.74!15.62!MAX;;chr9:102584241..102584261,+!p4@NR4A3!0.74!7.36!NR4A3;;chr19:45972701..45972774,+!p2@FOSB!0.74!6.31!FOSB;;chr4:83822199..83822239,+!p2@THAP9!0.74!5.56!THAP9;;chr21:30672433..30672464,+!p6@BACH1!0.74!4.51!BACH1;;chr9:94186101..94186122,-!p1@NFIL3!0.73!68.33!NFIL3;;chr2:10183651..10183713,+!p1@KLF11!0.73!35.74!KLF11;;chr2:60780753..60780800,-!p1@BCL11A!0.73!23.58!BCL11A;;chr12:11802753..11802834,+!p2@ETV6!0.73!23.58!ETV6;;chr14:64970670..64970712,-!p3@ZBTB25!0.73!10.21!ZBTB25;;chr2:145282041..145282092,-!p8@ZEB2!0.73!6.91!ZEB2;;chr14:45722360..45722415,-!p1@MIS18BP1!0.72!74.79!MIS18BP1;;chr4:140098339..140098392,-!p1@ELF2!0.72!39.20!ELF2;;chr8:48650982..48651023,-!p3@CEBPD!0.72!11.56!CEBPD;;chr4:185395191..185395226,-!p4@IRF2!0.72!6.16!IRF2;;chr5:142782862..142782881,-!p11@NR3C1!0.72!4.20!NR3C1;;chr14:75746705..75746720,+!p8@FOS!0.72!4.20!FOS;;c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EL;;chr2:70166258..70166288,+!p5@MXD1!0.20!0.60!MXD1;;chr2:8819174..8819185,+!p8@ID2!0.20!0.60!ID2;;chr3:101546889..101546895,+!p6@NFKBIZ!0.20!0.60!NFKBIZ;;chr3:101573360..101573363,+!p8@NFKBIZ!0.20!0.60!NFKBIZ;;chr3:18465604..18465618,-!p9@SATB1!0.20!0.60!SATB1;;chr4:18022185..18022189,-!p4@LCORL!0.20!0.60!LCORL;;chr4:26320869..26320880,+!p30@RBPJ!0.20!0.60!RBPJ;;chr4:26320884..26320897,+!p26@RBPJ!0.20!0.60!RBPJ;;chr4:83822343..83822355,+!p9@THAP9!0.20!0.60!THAP9;;chr10:135121790..135121801,+!p7@ZNF511!0.20!0.60!ZNF511;;chr10:3818974..3818985,-!p25@KLF6!0.20!0.60!KLF6;;chr11:113930401..113930422,+!p3@ZBTB16!0.20!0.60!ZBTB16;;chr12:11905413..11905432,+!p14@ETV6!0.20!0.60!ETV6;;chr12:52448293..52448318,+!p10@NR4A1!0.20!0.60!NR4A1;;chr12:52448515..52448538,+!p9@NR4A1!0.20!0.60!NR4A1;;chr12:54691726..54691738,-!p9@NFE2!0.20!0.60!NFE2;;chr12:57917054..57917065,+!p27@MBD6!0.20!0.60!MBD6;;chr12:72056858..72056869,+!p14@THAP2!0.20!0.60!THAP2;;chr5:142814347..142814358,-!p27@NR3C1!0.20!0.60!NR3C1;;chr5:88179271..88179286,-!p7@MEF2C!0.20!0.60!MEF2C;;chr5:88180342..88180365,-!p10@MEF2C!0.20!0.60!MEF2C;;chr6:106535598..106535637,+!p7@PRDM1!0.20!0.60!PRDM1;;chr6:41701557..41701578,-!p3@TFEB!0.20!0.60!TFEB;;chr6:45390137..45390148,+!p12@RUNX2!0.20!0.60!RUNX2;;chr8:116681878..116681893,-!p15@TRPS1!0.20!0.60!TRPS1;;chr9:117138946..117138968,-!p4@AKNA!0.20!0.60!AKNA;;chr16:85936412..85936431,+!p2@IRF8!0.20!0.60!IRF8;;chr17:38487239..38487261,+!p12@RARA!0.20!0.60!RARA;;chr19:22034784..22034801,-!p4@ZNF43!0.20!0.60!ZNF43;;chr19:36389839..36389857,-!p4@NFKBID!0.20!0.60!NFKBID;;chr19:45579699..45579704,-!p3@ZNF296!0.20!0.60!ZNF296;;chr19:45977697..45977713,+!p4@FOSB!0.20!0.60!FOSB;;chr19:45977993..45978005,+!p6@FOSB!0.20!0.60!FOSB;;chr1:16279391..16279405,-!p3@ZBTB17!0.20!0.60!ZBTB17;;chr1:221053444..221053473,+!p8@HLX!0.20!0.60!HLX;;chr1:221053526..221053540,+!p13@HLX!0.20!0.60!HLX;;chr1:244219392..244219409,+!p5@ZNF238!0.20!0.60!ZNF238;;chr1:40367692..40367703,-!p3@MYCL1!0.20!0.60!MYCL1;;chr20:48808064..48808086,+!p15@CEBPB!0.20!0.60!CEBPB;;chr21:30672734..30672748,+!p11@BACH1!0.20!0.60!BACH1;;chrX:118739782..118739829,-!p2@NKRF!0.20!0.60!NKRF;;chr2:70314601..70314622,+!p1@PCBP1!0.19!327.24!PCBP1;;chr8:145159376..145159407,+!p1@MAF1!0.19!58.42!MAF1;;chr7:86781734..86781777,+!p1@DMTF1!0.19!25.08!DMTF1;;chr10:98592009..98592061,+!p1@C10orf12,p1@LCOR!0.19!19.67!LCOR;;chr17:61920023..61920110,-!p1@SMARCD2!0.19!19.37!SMARCD2;;chr1:22778337..22778356,+!p1@ZBTB40!0.19!16.67!ZBTB40;;chr13:41635512..41635539,-!p2@ELF1!0.19!7.06!ELF1;;chr2:178129358..178129403,-!p5@NFE2L2!0.19!4.96!NFE2L2;;chr1:40997285..40997352,+!p1@ZNF684!0.19!4.20!ZNF684;;chr8:116681409..116681431,-!p2@TRPS1!0.19!3.00!TRPS1;;chr1:40942922..40942997,+!p1@ZNF642!0.19!2.85!ZNF642;;chr14:74253834..74253862,-!p5@C14orf43!0.19!2.70!C14orf43;;chr19:8942909..8942953,-!p2@ZNF558!0.19!2.55!ZNF558;;chr20:48807091..48807123,+!p7@CEBPB!0.19!2.25!CEBPB;;chr2:174830043..174830071,-!p6@SP3!0.19!2.25!SP3;;chr20:62462566..62462631,-!p1@ZBTB46!0.19!1.80!ZBTB46;;chr15:90544688..90544728,+!p2@ZNF710!0.19!1.80!ZNF710;;chr15:100106670..100106697,+!p4@MEF2A!0.19!1.50!MEF2A;;chr19:31840130..31840160,-!p2@TSHZ3!0.19!1.35!TSHZ3;;chr18:51690935..51690957,-!p8@MBD2!0.19!1.20!MBD2;;chr7:27835758..27835772,+!p3@TAX1BP1!0.19!1.05!TAX1BP1;;chr21:36260773..36260804,-!p7@RUNX1!0.19!1.05!RUNX1;;chr15:31619407..31619419,+!p9@KLF13!0.19!0.90!KLF13;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
 |ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor2.CNhs13216.11799-124C8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor2.CNhs13216.11799-124C8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor2.CNhs13216.11799-124C8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor2.CNhs13216.11799-124C8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor2.CNhs13216.11799-124C8.hg38.nobarcode.ctss.bed.gz
 |id=FF:11799-124C8
 |is_a=EFO:0002091;;FF:0011111
 |is_obsolete=
 |library_id=CNhs13216
+|library_id_phase_based=2:CNhs13216
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11799
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11799
 |name=CD14+CD16- Monocytes, donor2
 |namespace=
@@ Line 49: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13216,LSID1005,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11799-124C8;search_select_hide=table117:FF:11799-124C8
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FF:11799-124C8: Difference between revisions

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Latest revision as of 18:21, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0