FF:10704-109H2: Difference between revisions

Latest revision as of 14:34, 3 June 2020

Name:	osteoclastoma cell line:Hs 706.T
Species:	Human (Homo sapiens)
Library ID:	CNhs11835
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bone
dev stage	NA
sex	female
age	16
cell type	osteoclast
cell line	Hs 706.T
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005057

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11835		CAGE		DRX007976		DRR008848

Accession ID Hg19

Library id		BAM		CTSS
CNhs11835		DRZ000273		DRZ001658

Accession ID Hg38

Library id		BAM		CTSS
CNhs11835		DRZ011623		DRZ013008

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0386
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.152
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.402
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0554
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.141
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.246
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0079
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.058
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.106
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0185
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.155
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0809
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.246
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.14
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.331
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.517
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.682
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	1.007
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.608
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11835

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.672
MA0003.1	MA0003.1	0.473
MA0004.1	MA0004.1	0.143
MA0006.1	MA0006.1	0.0302
MA0007.1	MA0007.1	0.467
MA0009.1	MA0009.1	0.193
MA0014.1	MA0014.1	0.345
MA0017.1	MA0017.1	0.17
MA0018.2	MA0018.2	0.0242
MA0019.1	MA0019.1	0.32
MA0024.1	MA0024.1	0.00871
MA0025.1	MA0025.1	0.353
MA0027.1	MA0027.1	0.737
MA0028.1	MA0028.1	0.0393
MA0029.1	MA0029.1	0.0873
MA0030.1	MA0030.1	0.691
MA0031.1	MA0031.1	0.428
MA0035.2	MA0035.2	0.0355
MA0038.1	MA0038.1	0.123
MA0039.2	MA0039.2	0.0267
MA0040.1	MA0040.1	0.392
MA0041.1	MA0041.1	0.437
MA0042.1	MA0042.1	0.592
MA0043.1	MA0043.1	5.19187e-4
MA0046.1	MA0046.1	0.958
MA0047.2	MA0047.2	0.469
MA0048.1	MA0048.1	0.00373
MA0050.1	MA0050.1	0.0622
MA0051.1	MA0051.1	0.0802
MA0052.1	MA0052.1	0.267
MA0055.1	MA0055.1	0.597
MA0057.1	MA0057.1	0.798
MA0058.1	MA0058.1	0.0312
MA0059.1	MA0059.1	0.806
MA0060.1	MA0060.1	9.69806e-4
MA0061.1	MA0061.1	0.143
MA0062.2	MA0062.2	6.98477e-5
MA0065.2	MA0065.2	0.101
MA0066.1	MA0066.1	0.942
MA0067.1	MA0067.1	0.145
MA0068.1	MA0068.1	0.484
MA0069.1	MA0069.1	0.326
MA0070.1	MA0070.1	0.617
MA0071.1	MA0071.1	0.937
MA0072.1	MA0072.1	0.86
MA0073.1	MA0073.1	0.39
MA0074.1	MA0074.1	0.506
MA0076.1	MA0076.1	0.013
MA0077.1	MA0077.1	0.177
MA0078.1	MA0078.1	0.73
MA0079.2	MA0079.2	0.732
MA0080.2	MA0080.2	1.4565e-8
MA0081.1	MA0081.1	0.00463
MA0083.1	MA0083.1	0.1
MA0084.1	MA0084.1	0.112
MA0087.1	MA0087.1	0.867
MA0088.1	MA0088.1	0.237
MA0090.1	MA0090.1	2.19296e-5
MA0091.1	MA0091.1	0.687
MA0092.1	MA0092.1	0.889
MA0093.1	MA0093.1	0.196
MA0099.2	MA0099.2	0.509
MA0100.1	MA0100.1	0.0673
MA0101.1	MA0101.1	0.00486
MA0102.2	MA0102.2	2.20757e-4
MA0103.1	MA0103.1	8.15945e-5
MA0104.2	MA0104.2	0.0111
MA0105.1	MA0105.1	0.0557
MA0106.1	MA0106.1	0.0227
MA0107.1	MA0107.1	0.0191
MA0108.2	MA0108.2	0.00847
MA0111.1	MA0111.1	0.327
MA0112.2	MA0112.2	0.863
MA0113.1	MA0113.1	0.557
MA0114.1	MA0114.1	0.123
MA0115.1	MA0115.1	0.367
MA0116.1	MA0116.1	0.347
MA0117.1	MA0117.1	0.186
MA0119.1	MA0119.1	0.575
MA0122.1	MA0122.1	0.678
MA0124.1	MA0124.1	0.127
MA0125.1	MA0125.1	0.0643
MA0131.1	MA0131.1	0.252
MA0135.1	MA0135.1	0.0428
MA0136.1	MA0136.1	5.15864e-10
MA0137.2	MA0137.2	0.637
MA0138.2	MA0138.2	0.962
MA0139.1	MA0139.1	0.291
MA0140.1	MA0140.1	0.321
MA0141.1	MA0141.1	0.525
MA0142.1	MA0142.1	0.171
MA0143.1	MA0143.1	0.376
MA0144.1	MA0144.1	0.485
MA0145.1	MA0145.1	0.772
MA0146.1	MA0146.1	0.847
MA0147.1	MA0147.1	0.0691
MA0148.1	MA0148.1	0.807
MA0149.1	MA0149.1	0.32
MA0150.1	MA0150.1	0.633
MA0152.1	MA0152.1	0.0401
MA0153.1	MA0153.1	0.579
MA0154.1	MA0154.1	0.422
MA0155.1	MA0155.1	0.386
MA0156.1	MA0156.1	3.67813e-4
MA0157.1	MA0157.1	0.704
MA0159.1	MA0159.1	0.778
MA0160.1	MA0160.1	0.307
MA0162.1	MA0162.1	0.827
MA0163.1	MA0163.1	0.0863
MA0164.1	MA0164.1	0.798
MA0258.1	MA0258.1	0.87
MA0259.1	MA0259.1	0.196

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11835

Novel motif	Logo	P-value
1	1	0.504
10	10	0.993
100	100	0.781
101	101	0.712
102	102	0.246
103	103	0.223
104	104	0.285
105	105	0.346
106	106	0.65
107	107	0.497
108	108	0.505
109	109	0.581
11	11	0.73
110	110	0.632
111	111	0.468
112	112	0.678
113	113	0.0709
114	114	0.693
115	115	0.667
116	116	0.391
117	117	0.885
118	118	0.374
119	119	0.475
12	12	0.369
120	120	0.842
121	121	0.696
122	122	0.409
123	123	0.0851
124	124	0.635
125	125	0.618
126	126	0.724
127	127	0.49
128	128	0.565
129	129	0.354
13	13	0.025
130	130	0.56
131	131	0.922
132	132	0.761
133	133	0.799
134	134	0.0615
135	135	0.445
136	136	0.473
137	137	0.405
138	138	0.637
139	139	0.615
14	14	0.241
140	140	0.419
141	141	0.485
142	142	0.896
143	143	0.209
144	144	0.449
145	145	0.674
146	146	0.529
147	147	0.0911
148	148	0.355
149	149	0.985
15	15	0.397
150	150	0.748
151	151	0.818
152	152	0.0668
153	153	0.987
154	154	0.325
155	155	0.104
156	156	0.474
157	157	0.37
158	158	0.138
159	159	0.182
16	16	0.0411
160	160	0.26
161	161	0.95
162	162	0.306
163	163	0.434
164	164	0.731
165	165	0.802
166	166	0.179
167	167	0.822
168	168	0.188
169	169	0.763
17	17	0.544
18	18	0.0166
19	19	0.125
2	2	0.531
20	20	0.866
21	21	0.247
22	22	0.407
23	23	0.0808
24	24	0.342
25	25	0.366
26	26	0.64
27	27	0.586
28	28	0.911
29	29	0.909
3	3	0.783
30	30	0.757
31	31	0.65
32	32	5.25649e-19
33	33	0.855
34	34	0.988
35	35	0.94
36	36	0.347
37	37	0.406
38	38	0.264
39	39	0.595
4	4	0.66
40	40	0.262
41	41	0.47
42	42	0.518
43	43	0.5
44	44	0.827
45	45	0.751
46	46	0.339
47	47	0.419
48	48	0.968
49	49	0.884
5	5	0.123
50	50	0.615
51	51	0.397
52	52	0.948
53	53	0.104
54	54	0.56
55	55	0.175
56	56	0.924
57	57	0.481
58	58	0.145
59	59	0.0277
6	6	0.565
60	60	0.994
61	61	0.203
62	62	0.987
63	63	0.552
64	64	0.889
65	65	0.769
66	66	0.565
67	67	0.0275
68	68	0.383
69	69	0.492
7	7	0.282
70	70	0.156
71	71	0.606
72	72	0.197
73	73	0.0468
74	74	0.0144
75	75	0.798
76	76	0.194
77	77	0.111
78	78	0.239
79	79	0.0514
8	8	0.207
80	80	0.764
81	81	0.693
82	82	0.684
83	83	0.409
84	84	0.447
85	85	0.375
86	86	0.726
87	87	0.396
88	88	0.822
89	89	0.681
9	9	0.88
90	90	0.24
91	91	0.494
92	92	0.746
93	93	0.445
94	94	0.409
95	95	0.599
96	96	0.839
97	97	0.247
98	98	0.321
99	99	0.521

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11835

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100969 osteoclastoma cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000054 (bone matrix secreting cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0002092 (bone marrow cell)
0000137 (osteocyte)
0000092 (osteoclast)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
7 (disease of anatomical entity)
201 (connective tissue cancer)
0060100 (musculoskeletal system cancer)
200 (giant cell tumor)
4305 (bone giant cell tumor)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100583 (bone marrow cancer cell sample)
0100372 (bone cancer cell)
0100969 (osteoclastoma cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005057
-|accession_numbers=CAGE;DRX007976;DRR008848;DRZ000273;DRZ001658
+|accession_numbers=CAGE;DRX007976;DRR008848;DRZ000273;DRZ001658;DRZ011623;DRZ013008
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0000151,CL:0002320,CL:0002371,CL:0000766,CL:0000219,CL:0000054,CL:0000738,CL:0000255,CL:0002092,CL:0000137,CL:0000092
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:46299199..46299233,+!p1@CREB3L1!1.67!228.45!CREB3L1;;chr7:96654133..96654150,-!p1@DLX5!1.49!30.13!DLX5;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.49!30.13!ZBED1;;chr16:86600426..86600441,+!p1@FOXC2!1.36!53.39!FOXC2;;chr5:72744594..72744609,-!p1@FOXD1!1.34!93.06!FOXD1;;chr8:67525443..67525459,-!p2@MYBL1!1.28!26.70!MYBL1;;chr8:23540441..23540466,-!p1@NKX3-1!1.21!30.51!NKX3-1;;chr11:46299539..46299620,+!p2@CREB3L1!1.21!25.93!CREB3L1;;chr1:44513995..44514031,+!p1@KLF17!1.20!14.87!KLF17;;chr5:72744445..72744466,-!p2@FOXD1!1.18!23.65!FOXD1;;chr20:30433396..30433414,-!p1@FOXS1!1.16!13.35!FOXS1;;chr17:38256799..38256815,-!p3@NR1D1!1.14!23.26!NR1D1;;chr5:158526917..158526932,-!p1@EBF1!1.12!30.51!EBF1;;chr8:49833978..49833996,-!p1@SNAI2!1.11!244.85!SNAI2;;chr6:19837592..19837621,+!p1@ID4!1.11!72.08!ID4;;chr1:23885981..23886002,-!p1@ID3!1.08!1946.96!ID3;;chr2:176994408..176994492,+!p1@HOXD8!1.07!10.68!HOXD8;;chr8:49833948..49833973,-!p2@SNAI2!1.06!67.50!SNAI2;;chr20:50179368..50179392,-!p2@NFATC2!1.02!12.20!NFATC2;;chr3:5021268..5021282,+!p4@BHLHE40!0.99!18.31!BHLHE40;;chr9:132427972..132428056,+!p1@PRRX2!0.99!11.44!PRRX2;;chr8:40755333..40755352,-!p1@ZMAT4!0.99!8.77!ZMAT4;;chr14:62162285..62162296,+!p3@HIF1A!0.96!43.48!HIF1A;;chr17:38256822..38256851,-!p1@NR1D1!0.95!64.07!NR1D1;;chr5:134369905..134369972,-!p1@PITX1!0.95!12.20!PITX1;;chr7:27224842..27224872,-!p1@HOXA11!0.95!8.01!HOXA11;;chr7:96654026..96654061,-!p2@DLX5!0.95!8.01!DLX5;;chr17:48072574..48072597,-!p1@DLX3!0.92!7.25!DLX3;;chr14:62162258..62162269,+!p2@HIF1A!0.91!72.08!HIF1A;;chr17:46132044..46132080,+!p4@NFE2L1!0.90!6.86!NFE2L1;;chr5:134369879..134369898,-!p2@PITX1!0.90!6.86!PITX1;;chr19:16435625..16435682,+!p1@KLF2!0.87!220.06!KLF2;;chr2:200322654..200322707,-!p2@SATB2!0.85!9.15!SATB2;;chr11:46299443..46299459,+!p4@CREB3L1!0.85!6.10!CREB3L1;;chr5:2751762..2751784,-!p1@IRX2!0.85!6.10!IRX2;;chr7:27224795..27224840,-!p2@HOXA11!0.85!6.10!HOXA11;;chr1:119530493..119530572,-!p1@TBX15!0.85!6.10!TBX15;;chr6:45296048..45296082,+!p1@RUNX2!0.84!6.86!RUNX2;;chr2:208030647..208030689,-!p1@KLF7!0.82!50.72!KLF7;;chr12:80085061..80085119,-!p6@PAWR!0.82!9.15!PAWR;;chr19:45908292..45908374,-!p1@PPP1R13L!0.81!52.25!PPP1R13L;;chr13:74708029..74708077,-!p2@KLF12!0.80!16.40!KLF12;;chr5:158527104..158527135,-!p4@EBF1!0.80!5.34!EBF1;;chr9:132427883..132427951,+!p2@PRRX2!0.80!5.34!PRRX2;;chr2:45236540..45236577,-!p1@SIX2!0.80!5.34!SIX2;;chr2:46524537..46524553,+!p1@EPAS1!0.79!557.58!EPAS1;;chr3:25469724..25469773,+!p1@RARB!0.79!7.63!RARB;;chr16:54320158..54320200,-!p5@IRX3!0.79!7.63!IRX3;;chr16:54964740..54964789,+!p1@IRX5!0.79!7.63!IRX5;;chr7:19157043..19157088,-!p2@TWIST1!0.78!13.35!TWIST1;;chr8:67525473..67525518,-!p1@MYBL1!0.78!12.20!MYBL1;;chr16:54320646..54320672,-!p2@IRX3!0.78!8.01!IRX3;;chr5:72744562..72744573,-!p3@FOXD1!0.78!6.48!FOXD1;;chr7:27205106..27205134,-!p2@HOXA9!0.78!4.96!HOXA9;;chr1:25291475..25291511,-!p2@RUNX3!0.78!4.96!RUNX3;;chr6:1389789..1389821,+!p1@FOXF2!0.77!6.86!FOXF2;;chr16:54320617..54320643,-!p3@IRX3!0.77!6.48!IRX3;;chr5:72743793..72743855,-!p4@FOXD1!0.76!5.72!FOXD1;;chr10:63809106..63809127,+!p1@ARID5B!0.75!69.03!ARID5B;;chr2:74229812..74229867,+!p1@TET3!0.75!12.59!TET3;;chr9:4299959..4299974,-!p4@GLIS3!0.75!7.63!GLIS3;;chr13:37494248..37494260,-!p3@SMAD9!0.75!4.58!SMAD9;;chr16:86600870..86600921,+!p2@FOXC2!0.75!4.58!FOXC2;;chr19:16435705..16435726,+!p3@KLF2!0.75!4.58!KLF2;;chr20:48599506..48599526,+!p1@SNAI1!0.73!31.27!SNAI1;;chr10:63809013..63809041,+!p3@ARID5B!0.73!26.70!ARID5B;;chr1:200379104..200379128,-!p2@ZNF281!0.73!11.44!ZNF281;;chr3:178789522..178789564,-!p2@ZMAT3!0.72!34.71!ZMAT3;;chr12:53614115..53614154,-!p1@RARG!0.72!25.55!RARG;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.72!4.58!GLIS1;;chr2:237077022..237077038,-!p1@GBX2!0.72!4.20!GBX2;;chr3:25470156..25470227,+!p2@RARB!0.72!4.20!RARB;;chr16:54320101..54320125,-!p4@IRX3!0.71!6.10!IRX3;;chr11:12696071..12696086,+!p3@TEAD1!0.71!5.72!TEAD1;;chr3:71179699..71179744,-!p2@FOXP1!0.70!34.32!FOXP1;;chr14:61116183..61116208,-!p1@SIX1!0.70!17.16!SIX1;;chr13:74708475..74708499,-!p5@KLF12!0.70!9.92!KLF12;;chr3:71179746..71179783,-!p7@FOXP1!0.68!14.11!FOXP1;;chr2:208031943..208031978,-!p5@KLF7!0.68!5.34!KLF7;;chr4:109089095..109089144,-!p6@LEF1!0.68!3.81!LEF1;;chr7:1577899..1577943,+!p3@MAFK!0.68!3.81!MAFK;;chr16:31076332..31076388,-!p3@ZNF668!0.68!3.81!ZNF668;;chr11:46299186..46299195,+!p3@CREB3L1!0.67!4.20!CREB3L1;;chr9:4300050..4300118,-!p1@GLIS3!0.66!26.70!GLIS3;;chrX:106960180..106960197,-!p2@TSC22D3!0.66!15.64!TSC22D3;;chr6:91006518..91006570,-!p1@BACH2!0.66!9.15!BACH2;;chr16:54320675..54320715,-!p1@IRX3!0.66!8.39!IRX3;;chr8:106330656..106330684,+!p1@ZFPM2!0.65!10.30!ZFPM2;;chr3:157823517..157823562,-!p1@SHOX2!0.65!3.81!SHOX2;;chr2:237076992..237077008,-!p2@GBX2!0.65!3.43!GBX2;;chr3:189348969..189349018,+!p4@TP63!0.65!3.43!TP63;;chr7:27205136..27205164,-!p1@HOXA9!0.65!3.43!HOXA9;;chr11:16629369..16629392,-!p5@SOX6!0.65!3.43!SOX6;;chr11:46333934..46333963,+!p5@CREB3L1!0.65!3.43!CREB3L1;;chr9:16705069..16705086,-!p3@BNC2!0.65!3.43!BNC2;;chr21:36421535..36421610,-!p2@RUNX1!0.63!13.35!RUNX1;;chrX:106960221..106960236,-!p3@TSC22D3!0.63!10.30!TSC22D3;;chr1:170632285..170632309,+!p1@PRRX1!0.63!3.81!PRRX1;;chr8:72756637..72756664,-!p3@MSC!0.63!3.81!MSC;;chr15:66994663..66994680,+!p1@SMAD6!0.62!8.39!SMAD6;;chr3:5021113..5021180,+!p1@BHLHE40!0.61!261.25!BHLHE40;;chr16:29817841..29817865,+!p1@MAZ!0.61!78.95!MAZ;;chr12:124873357..124873401,-!p1@NCOR2!0.61!42.71!NCOR2;;chr6:45390025..45390076,+!p2@RUNX2!0.61!8.39!RUNX2;;chr4:81104895..81104920,+!p2@PRDM8!0.61!4.96!PRDM8;;chr1:40105299..40105326,-!p1@HEYL!0.61!3.05!HEYL;;chr11:16629261..16629284,-!p1@SOX6!0.61!3.05!SOX6;;chr11:46316699..46316719,+!p10@CREB3L1!0.61!3.05!CREB3L1;;chr12:54380404..54380433,+!p3@HOXC10!0.61!3.05!HOXC10;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.61!3.05!HOXC5;;chr13:37494275..37494304,-!p2@SMAD9!0.61!3.05!SMAD9;;chr16:54320302..54320317,-!p10@IRX3!0.61!3.05!IRX3;;chr5:158526459..158526481,-!p2@EBF1!0.60!4.20!EBF1;;chr14:75894714..75894733,+!p1@JDP2!0.58!96.87!JDP2;;chr7:28448995..28449011,+!p4@CREB5!0.58!4.20!CREB5;;chr12:125003087..125003141,-!p4@NCOR2!0.58!3.81!NCOR2;;chr14:62162224..62162254,+!p1@HIF1A!0.57!495.80!HIF1A;;chr20:30193083..30193098,+!p1@ID1!0.57!273.07!ID1;;chr14:62203595..62203676,+!p4@HIF1A!0.57!5.72!HIF1A;;chr8:67525524..67525543,-!p3@MYBL1!0.57!4.96!MYBL1;;chr3:193853927..193853944,+!p1@HES1!0.56!107.55!HES1;;chr17:38474489..38474548,+!p1@RARA!0.56!104.12!RARA;;chr7:28220198..28220269,-!p2@JAZF1!0.56!29.37!JAZF1;;chr3:114343768..114343822,-!p1@ZBTB20!0.56!14.11!ZBTB20;;chr15:66994561..66994597,+!p2@SMAD6!0.56!7.25!SMAD6;;chr18:52989031..52989079,-!p2@TCF4!0.56!7.25!TCF4;;chr3:18486354..18486377,-!p2@SATB1!0.56!3.43!SATB1;;chr3:21792585..21792625,-!p2@ZNF385D!0.56!3.05!ZNF385D;;chr7:1577111..1577132,+!p4@MAFK!0.56!3.05!MAFK;;chr5:139492456..139492489,+!p7@PURA!0.56!2.67!PURA;;chr5:72744336..72744359,-!p5@FOXD1!0.56!2.67!FOXD1;;chr7:27196267..27196311,-!p1@HOXA7!0.56!2.67!HOXA7;;chr7:63505799..63505904,+!p1@ZNF727!0.56!2.67!ZNF727;;chr2:102091566..102091581,-!p1@RFX8!0.56!2.67!RFX8;;chr16:54320280..54320291,-!p9@IRX3!0.56!2.67!IRX3;;chrX:89176902..89176913,+!p1@TGIF2LX!0.56!2.67!TGIF2LX;;chr11:16629288..16629315,-!p8@SOX6!0.56!2.67!SOX6;;chr12:54378923..54378966,+!p1@HOXC10!0.56!2.67!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.56!2.67!HOXC5;;chr1:170632250..170632277,+!p7@PRRX1!0.56!2.67!PRRX1;;chr10:3827389..3827408,-!p1@KLF6!0.55!249.42!KLF6;;chr20:39946361..39946379,-!p2@ZHX3!0.55!9.15!ZHX3;;chr3:5021191..5021202,+!p3@BHLHE40!0.55!8.01!BHLHE40;;chr12:125002739..125002756,-!p6@NCOR2!0.55!4.20!NCOR2;;chr2:192015701..192015743,-!p1@STAT4!0.55!3.81!STAT4;;chr6:1610293..1610310,+!p1@FOXC1!0.54!4.58!FOXC1;;chr14:62213827..62213853,+!p6@HIF1A!0.54!3.81!HIF1A;;chr12:77459306..77459365,-!p1@E2F7!0.53!38.52!E2F7;;chr12:124873852..124873881,-!p3@NCOR2!0.53!17.92!NCOR2;;chr1:59249645..59249656,-!p4@JUN!0.53!7.25!JUN;;chr9:4300016..4300039,-!p2@GLIS3!0.53!4.58!GLIS3;;chr4:81104985..81105005,+!p4@PRDM8!0.53!3.05!PRDM8;;chr2:238600789..238600925,+!p1@LRRFIP1!0.52!60.64!LRRFIP1;;chr7:28220354..28220441,-!p1@JAZF1!0.52!46.15!JAZF1;;chr13:74708411..74708436,-!p3@KLF12!0.52!8.39!KLF12;;chr15:61521417..61521460,-!p2@RORA!0.52!6.10!RORA;;chr13:37494365..37494381,-!p1@SMAD9!0.52!4.58!SMAD9;;chr1:170633348..170633399,+!p2@PRRX1!0.52!3.43!PRRX1;;chr18:46475696..46475713,-!p1@SMAD7!0.52!2.67!SMAD7;;chr16:86600458..86600461,+!p3@FOXC2!0.52!2.29!FOXC2;;chr19:9609272..9609297,-!p1@ZNF560!0.52!2.29!ZNF560;;chr1:119530636..119530653,-!p2@TBX15!0.52!2.29!TBX15;;chrX:24167086..24167111,+!p4@ZFX!0.52!2.29!ZFX;;chr5:158527139..158527161,-!p5@EBF1!0.52!2.29!EBF1;;chr12:80085120..80085156,-!p14@PAWR!0.52!2.29!PAWR;;chr13:37494306..37494324,-!p4@SMAD9!0.52!2.29!SMAD9;;chr14:37131058..37131139,+!p1@PAX9!0.52!2.29!PAX9;;chr3:21792682..21792720,-!p1@ZNF385D!0.52!2.29!ZNF385D;;chr3:69811858..69811881,+!p5@MITF!0.52!2.29!MITF;;chr3:178789566..178789620,-!p1@ZMAT3!0.51!52.25!ZMAT3;;chr10:63809077..63809089,+!p5@ARID5B!0.51!5.72!ARID5B;;chr8:106330696..106330719,+!p2@ZFPM2!0.51!3.05!ZFPM2;;chr1:23886132..23886156,-!p2@ID3!0.51!2.67!ID3;;chr9:110252035..110252057,-!p1@KLF4!0.50!45.77!KLF4;;chr3:23986824..23986848,+!p2@NR1D2!0.50!15.64!NR1D2;;chr10:63853436..63853442,+!p4@ARID5B!0.50!14.87!ARID5B;;chr12:125002827..125002855,-!p5@NCOR2!0.50!3.43!NCOR2;;chr15:66994615..66994630,+!p3@SMAD6!0.50!3.43!SMAD6;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.49!27.84!GLIS2;;chr21:36259445..36259519,-!p4@RUNX1!0.49!7.25!RUNX1;;chr19:13134772..13134822,+!p2@NFIX!0.49!3.43!NFIX;;chr3:14988878..14988903,+!p7@NR2C2!0.49!3.05!NR2C2;;chr16:29817789..29817838,+!p2@MAZ!0.48!36.61!MAZ;;chr12:2986275..2986363,-!p1@FOXM1!0.48!27.46!FOXM1;;chr2:238536207..238536290,+!p2@LRRFIP1!0.48!26.32!LRRFIP1;;chr13:74708372..74708409,-!p4@KLF12!0.48!5.72!KLF12;;chr10:77161133..77161176,-!p3@ZNF5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@@ Line 41: / Line 41: @@
 |fonse_treatment_closure=
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@@ Line 51: / Line 60: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10704-109H2;search_select_hide=table117:FF:10704-109H2
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FF:10704-109H2: Difference between revisions

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Latest revision as of 14:34, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0