FF:11865-125B2: Difference between revisions

Latest revision as of 18:24, 4 June 2020

Name:	CD14+ monocytes - treated with lipopolysaccharide, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13470
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	female
age	69
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D3-6
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004927

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13470		CAGE		DRX008159		DRR009031

Accession ID Hg19

Library id		BAM		CTSS
CNhs13470		DRZ000456		DRZ001841

Accession ID Hg38

Library id		BAM		CTSS
CNhs13470		DRZ011806		DRZ013191

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.666
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.269
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.767
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.363
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.281
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.666
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.767
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.206
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.466
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.206
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0.977
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.378
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.395
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.353
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.719
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.345
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.345
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.461
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.296
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.206
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0.459
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.443
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.719
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.551
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.206
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.903
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.45
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.45
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0.275
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.884
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.507
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.206
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.345
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.666
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.206
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.206
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.601
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.82
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.666
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.206
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.13
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.507
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.103
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.352
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.345
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.534
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.206
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.206
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.206
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.206
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.206
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13470

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.12948e-6
MA0003.1	MA0003.1	0.688
MA0004.1	MA0004.1	0.791
MA0006.1	MA0006.1	0.784
MA0007.1	MA0007.1	0.948
MA0009.1	MA0009.1	0.428
MA0014.1	MA0014.1	0.532
MA0017.1	MA0017.1	0.108
MA0018.2	MA0018.2	0.41
MA0019.1	MA0019.1	0.251
MA0024.1	MA0024.1	0.00185
MA0025.1	MA0025.1	0.142
MA0027.1	MA0027.1	0.728
MA0028.1	MA0028.1	0.0044
MA0029.1	MA0029.1	0.0766
MA0030.1	MA0030.1	0.1
MA0031.1	MA0031.1	0.173
MA0035.2	MA0035.2	0.0986
MA0038.1	MA0038.1	0.193
MA0039.2	MA0039.2	0.622
MA0040.1	MA0040.1	0.764
MA0041.1	MA0041.1	0.886
MA0042.1	MA0042.1	0.767
MA0043.1	MA0043.1	1.44338e-5
MA0046.1	MA0046.1	0.00334
MA0047.2	MA0047.2	0.23
MA0048.1	MA0048.1	0.759
MA0050.1	MA0050.1	2.27921e-24
MA0051.1	MA0051.1	9.33174e-19
MA0052.1	MA0052.1	0.286
MA0055.1	MA0055.1	0.978
MA0057.1	MA0057.1	0.406
MA0058.1	MA0058.1	0.62
MA0059.1	MA0059.1	0.533
MA0060.1	MA0060.1	1.32008e-11
MA0061.1	MA0061.1	1.52829e-16
MA0062.2	MA0062.2	0.0692
MA0065.2	MA0065.2	0.0285
MA0066.1	MA0066.1	0.0613
MA0067.1	MA0067.1	5.56115e-4
MA0068.1	MA0068.1	0.313
MA0069.1	MA0069.1	0.686
MA0070.1	MA0070.1	0.0091
MA0071.1	MA0071.1	0.588
MA0072.1	MA0072.1	0.782
MA0073.1	MA0073.1	0.616
MA0074.1	MA0074.1	0.145
MA0076.1	MA0076.1	0.0043
MA0077.1	MA0077.1	0.304
MA0078.1	MA0078.1	0.817
MA0079.2	MA0079.2	0.188
MA0080.2	MA0080.2	3.13694e-12
MA0081.1	MA0081.1	0.00113
MA0083.1	MA0083.1	0.267
MA0084.1	MA0084.1	0.511
MA0087.1	MA0087.1	0.948
MA0088.1	MA0088.1	0.105
MA0090.1	MA0090.1	0.646
MA0091.1	MA0091.1	0.695
MA0092.1	MA0092.1	0.39
MA0093.1	MA0093.1	0.865
MA0099.2	MA0099.2	1.91344e-40
MA0100.1	MA0100.1	0.6
MA0101.1	MA0101.1	1.65457e-19
MA0102.2	MA0102.2	6.47641e-11
MA0103.1	MA0103.1	0.221
MA0104.2	MA0104.2	0.88
MA0105.1	MA0105.1	1.98575e-17
MA0106.1	MA0106.1	0.932
MA0107.1	MA0107.1	7.39581e-26
MA0108.2	MA0108.2	0.374
MA0111.1	MA0111.1	0.367
MA0112.2	MA0112.2	9.88702e-5
MA0113.1	MA0113.1	0.597
MA0114.1	MA0114.1	0.181
MA0115.1	MA0115.1	0.827
MA0116.1	MA0116.1	4.0041e-4
MA0117.1	MA0117.1	0.153
MA0119.1	MA0119.1	0.0848
MA0122.1	MA0122.1	0.971
MA0124.1	MA0124.1	0.615
MA0125.1	MA0125.1	0.225
MA0131.1	MA0131.1	0.339
MA0135.1	MA0135.1	0.767
MA0136.1	MA0136.1	1.04427e-10
MA0137.2	MA0137.2	0.137
MA0138.2	MA0138.2	0.767
MA0139.1	MA0139.1	0.5
MA0140.1	MA0140.1	0.0603
MA0141.1	MA0141.1	0.233
MA0142.1	MA0142.1	0.766
MA0143.1	MA0143.1	0.738
MA0144.1	MA0144.1	0.0604
MA0145.1	MA0145.1	0.36
MA0146.1	MA0146.1	0.342
MA0147.1	MA0147.1	0.861
MA0148.1	MA0148.1	0.572
MA0149.1	MA0149.1	0.452
MA0150.1	MA0150.1	4.10877e-19
MA0152.1	MA0152.1	0.91
MA0153.1	MA0153.1	5.65373e-4
MA0154.1	MA0154.1	9.42466e-4
MA0155.1	MA0155.1	0.827
MA0156.1	MA0156.1	2.06026e-6
MA0157.1	MA0157.1	0.665
MA0159.1	MA0159.1	0.0276
MA0160.1	MA0160.1	0.197
MA0162.1	MA0162.1	0.736
MA0163.1	MA0163.1	1.09668e-7
MA0164.1	MA0164.1	0.48
MA0258.1	MA0258.1	0.00722
MA0259.1	MA0259.1	0.361

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13470

Novel motif	Logo	P-value
1	1	0.12
10	10	0.0435
100	100	0.814
101	101	0.963
102	102	0.947
103	103	0.237
104	104	0.633
105	105	0.179
106	106	1.42232e-4
107	107	0.0542
108	108	0.866
109	109	0.549
11	11	0.127
110	110	0.205
111	111	0.0393
112	112	0.369
113	113	0.173
114	114	0.0307
115	115	0.204
116	116	0.846
117	117	0.187
118	118	0.296
119	119	0.13
12	12	0.28
120	120	0.763
121	121	0.737
122	122	0.877
123	123	0.323
124	124	0.642
125	125	0.133
126	126	0.243
127	127	0.426
128	128	0.0301
129	129	0.55
13	13	0.132
130	130	0.164
131	131	0.789
132	132	0.289
133	133	0.931
134	134	0.353
135	135	0.733
136	136	0.773
137	137	0.0223
138	138	0.413
139	139	0.131
14	14	0.473
140	140	0.305
141	141	0.31
142	142	0.418
143	143	0.0264
144	144	0.649
145	145	0.219
146	146	0.701
147	147	0.948
148	148	0.00647
149	149	0.664
15	15	0.182
150	150	0.348
151	151	0.44
152	152	0.387
153	153	0.494
154	154	0.841
155	155	0.96
156	156	0.944
157	157	0.354
158	158	0.0624
159	159	0.744
16	16	0.291
160	160	0.432
161	161	0.437
162	162	0.542
163	163	0.0583
164	164	0.134
165	165	0.0282
166	166	0.853
167	167	0.257
168	168	0.0726
169	169	0.0133
17	17	0.168
18	18	0.126
19	19	0.359
2	2	0.672
20	20	0.251
21	21	0.744
22	22	0.306
23	23	0.0151
24	24	0.589
25	25	0.573
26	26	0.0682
27	27	0.641
28	28	0.31
29	29	0.342
3	3	0.0941
30	30	0.491
31	31	0.528
32	32	0.888
33	33	0.226
34	34	0.589
35	35	0.121
36	36	0.118
37	37	0.117
38	38	0.344
39	39	0.648
4	4	0.991
40	40	0.312
41	41	0.0441
42	42	0.313
43	43	0.0192
44	44	0.715
45	45	0.584
46	46	0.172
47	47	0.558
48	48	0.471
49	49	0.106
5	5	0.328
50	50	0.948
51	51	0.513
52	52	0.185
53	53	0.438
54	54	0.325
55	55	0.422
56	56	0.566
57	57	0.853
58	58	0.141
59	59	0.174
6	6	0.677
60	60	0.023
61	61	0.758
62	62	0.0781
63	63	0.452
64	64	0.56
65	65	0.135
66	66	0.112
67	67	0.474
68	68	0.656
69	69	0.194
7	7	0.324
70	70	0.0521
71	71	0.0389
72	72	0.148
73	73	0.402
74	74	0.022
75	75	0.294
76	76	0.25
77	77	0.352
78	78	0.106
79	79	0.963
8	8	0.306
80	80	0.222
81	81	0.224
82	82	0.138
83	83	0.0341
84	84	0.0181
85	85	0.00941
86	86	0.107
87	87	0.943
88	88	0.838
89	89	0.174
9	9	0.24
90	90	0.119
91	91	0.254
92	92	0.187
93	93	0.84
94	94	0.086
95	95	0.896
96	96	0.104
97	97	0.547
98	98	0.116
99	99	0.172

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13470

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011108 human CD14-positive monocytes - treated with lipopolysaccharide sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000335 (LPS treatment sample)
0011108 (human CD14-positive monocytes - treated with lipopolysaccharide sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00004927
-|accession_numbers=CAGE;DRX008159;DRR009031;DRZ000456;DRZ001841
+|accession_numbers=CAGE;DRX008159;DRR009031;DRZ000456;DRZ001841;DRZ011806;DRZ013191
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.48!3045.16!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.89!777.94!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.76!579.37!TFEC;;chr16:85932760..85932775,+!p1@IRF8!2.42!262.74!IRF8;;chr12:54778471..54778528,-!p1@ZNF385A!2.31!200.99!ZNF385A;;chr20:39317868..39317884,-!p1@MAFB!2.20!1744.16!MAFB;;chr11:47400062..47400077,-!p2@SPI1!2.18!149.53!SPI1;;chr14:35872453..35872485,-!p2@NFKBIA!2.15!332.97!NFKBIA;;chr3:101546827..101546847,+!p2@NFKBIZ!2.13!184.65!NFKBIZ;;chr11:47399947..47399961,-!p3@SPI1!2.11!128.95!SPI1;;chr2:192015701..192015743,-!p1@STAT4!2.10!167.70!STAT4;;chr6:126240380..126240430,+!p2@NCOA7!2.01!254.87!NCOA7;;chr10:51572408..51572454,+!p3@NCOA4!1.99!537.59!NCOA4;;chr2:70142232..70142251,+!p1@MXD1!1.99!517.01!MXD1;;chr12:72056800..72056834,+!p1@THAP2!1.99!128.34!THAP2;;chr12:72056749..72056767,+!p6@THAP2!1.98!103.52!THAP2;;chr14:35873947..35873965,-!p1@NFKBIA!1.96!5355.97!NFKBIA;;chr21:34442439..34442455,+!p1@OLIG1!1.94!86.57!OLIG1;;chr10:104155659..104155676,+!p4@NFKB2!1.90!96.86!NFKB2;;chr19:50432132..50432217,+!p2@ATF5!1.86!84.76!ATF5;;chr11:615942..615957,-!p1@IRF7!1.84!612.06!IRF7;;chr10:104155480..104155534,+!p2@NFKB2!1.83!408.04!NFKB2;;chr11:65430554..65430579,-!p3@RELA!1.83!162.85!RELA;;chr11:47400032..47400043,-!p5@SPI1!1.82!65.38!SPI1;;chr12:72056773..72056796,+!p3@THAP2!1.80!79.91!THAP2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.79!2945.27!NFKBIZ;;chr4:103422499..103422632,+!p1@NFKB1!1.79!1180.53!NFKB1;;chr2:145275162..145275202,-!p2@ZEB2!1.79!337.21!ZEB2;;chr11:47399996..47400014,-!p4@SPI1!1.79!60.54!SPI1;;chr1:38325227..38325246,-!p2@MTF1!1.78!79.31!MTF1;;chr21:30673091..30673135,+!p7@BACH1!1.78!59.93!BACH1;;chr7:50344289..50344323,+!p1@IKZF1!1.78!59.93!IKZF1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.76!650.80!ZC3H12A;;chr2:145277640..145277771,-!p1@ZEB2!1.73!670.78!ZEB2;;chr2:61108695..61108753,+!p1@REL!1.73!346.89!REL;;chr10:31288398..31288455,-!p2@ZNF438!1.71!58.72!ZNF438;;chr2:68592394..68592405,+!p2@PLEK!1.70!49.04!PLEK;;chr10:35484053..35484076,+!p1@CREM!1.69!115.63!CREM;;chr9:102584262..102584276,+!p1@NR4A3!1.69!102.92!NR4A3;;chr6:126240442..126240459,+!p4@NCOA7!1.68!58.72!NCOA7;;chr21:30671690..30671762,+!p2@BACH1!1.67!149.53!BACH1;;chr8:123793988..123794016,+!p1@ZHX2!1.67!78.70!ZHX2;;chr6:144385698..144385742,-!p2@PLAGL1!1.64!50.85!PLAGL1;;chr10:104154246..104154347,+!p3@NFKB2!1.63!242.16!NFKB2;;chr6:106534192..106534224,+!p1@PRDM1!1.63!114.42!PRDM1;;chr10:51572339..51572376,+!p4@NCOA4!1.63!92.02!NCOA4;;chr4:81104895..81104920,+!p2@PRDM8!1.62!59.93!PRDM8;;chr11:65430535..65430549,-!p4@RELA!1.62!47.22!RELA;;chr18:77155922..77155939,+!p1@NFATC1!1.61!105.34!NFATC1;;chr9:102584128..102584144,+!p3@NR4A3!1.58!68.41!NR4A3;;chr11:615570..615721,-!p2@IRF7!1.56!68.41!IRF7;;chr6:126240463..126240489,+!p6@NCOA7!1.56!39.35!NCOA7;;chr2:231090471..231090504,+!p2@SP140!1.56!35.72!SP140;;chrX:153305787..153305807,-!p3@MECP2!1.56!35.72!MECP2;;chr16:31885093..31885165,+!p1@ZNF267!1.54!492.80!ZNF267;;chr1:157108130..157108173,-!p1@ETV3!1.54!234.90!ETV3;;chr6:12012170..12012245,+!p1@HIVEP1!1.54!161.04!HIVEP1;;chr1:221052776..221052799,+!p1@HLX!1.54!59.33!HLX;;chr2:231084639..231084654,-!p2@SP110!1.54!54.49!SP110;;chr14:35872926..35872951,-!p4@NFKBIA!1.54!46.62!NFKBIA;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.54!33.90!ZBED1;;chr5:131826457..131826514,-!p1@IRF1!1.53!1223.51!IRF1;;chr21:30671235..30671253,+!p1@BACH1!1.52!391.69!BACH1;;chr14:35872494..35872511,-!p5@NFKBIA!1.52!42.38!NFKBIA;;chr10:64018918..64018936,+!p2@ZNF365!1.51!31.48!ZNF365;;chr2:68615063..68615089,+!p4@PLEK!1.51!31.48!PLEK;;chr6:44233252..44233296,-!p1@NFKBIE!1.50!289.99!NFKBIE;;chr9:102584159..102584174,+!p2@NR4A3!1.49!53.28!NR4A3;;chr2:145277882..145277967,-!p3@ZEB2!1.49!50.25!ZEB2;;chr2:231090433..231090469,+!p1@SP140!1.49!29.66!SP140;;chr11:47400045..47400060,-!p6@SPI1!1.49!29.66!SPI1;;chr11:65430586..65430593,-!p5@RELA!1.48!32.69!RELA;;chr2:122042770..122042785,-!p1@TFCP2L1!1.48!29.06!TFCP2L1;;chr22:38597987..38598021,+!p2@MAFF!1.47!166.48!MAFF;;chr19:45252008..45252024,+!p2@BCL3!1.46!88.99!BCL3;;chr14:35872962..35873025,-!p3@NFKBIA!1.46!69.02!NFKBIA;;chr11:64764435..64764449,-!p1@BATF2!1.46!38.14!BATF2;;chr11:47399920..47399931,-!p7@SPI1!1.45!27.24!SPI1;;chr6:15246200..15246214,+!p2@JARID2!1.44!72.04!JARID2;;chr5:142782823..142782854,-!p3@NR3C1!1.44!37.53!NR3C1;;chr17:40440225..40440268,+!p3@STAT5A!1.44!33.90!STAT5A;;chr10:31288370..31288393,-!p3@ZNF438!1.44!26.64!ZNF438;;chr11:34642612..34642646,+!p1@EHF!1.44!26.64!EHF;;chr1:212782094..212782109,+!p1@ATF3!1.43!671.39!ATF3;;chr14:35872542..35872553,-!p10@NFKBIA!1.43!26.03!NFKBIA;;chr4:81104985..81105005,+!p4@PRDM8!1.42!30.88!PRDM8;;chr19:45971246..45971265,+!p1@FOSB!1.41!442.55!FOSB;;chr19:36391434..36391450,-!p1@NFKBID!1.41!47.83!NFKBID;;chr21:30672433..30672464,+!p6@BACH1!1.41!24.82!BACH1;;chr7:115670792..115670797,-!p2@TFEC!1.40!24.22!TFEC;;chrX:129244454..129244488,-!p1@ELF4!1.38!161.04!ELF4;;chr13:41593425..41593480,-!p1@ELF1!1.38!141.66!ELF1;;chr3:39195037..39195069,-!p2@CSRNP1!1.38!137.43!CSRNP1;;chr12:54778351..54778378,-!p6@ZNF385A!1.38!23.01!ZNF385A;;chr9:129567282..129567353,+!p1@ZBTB43!1.37!286.35!ZBTB43;;chr4:81105027..81105039,+!p3@PRDM8!1.37!26.03!PRDM8;;chr14:35872414..35872425,-!p7@NFKBIA!1.37!24.82!NFKBIA;;chr12:72056706..72056717,+!p10@THAP2!1.37!22.40!THAP2;;chr4:81104865..81104886,+!p6@PRDM8!1.36!23.61!PRDM8;;chr19:50432104..50432126,+!p6@ATF5!1.36!21.79!ATF5;;chr2:97202480..97202499,+!p1@ARID5A!1.35!210.07!ARID5A;;chr10:104155680..104155687,+!p6@NFKB2!1.35!21.19!NFKB2;;chr17:40440359..40440386,+!p4@STAT5A!1.35!21.19!STAT5A;;chr7:17338266..17338282,+!p1@AHR!1.34!219.15!AHR;;chr4:103423079..103423112,+!p4@NFKB1!1.33!20.58!NFKB1;;chr21:36260295..36260310,-!p3@RUNX1!1.32!32.09!RUNX1;;chr3:39195139..39195150,-!p3@CSRNP1!1.32!25.43!CSRNP1;;chr6:126240356..126240379,+!p7@NCOA7!1.32!24.22!NCOA7;;chr20:56195474..56195506,-!p1@ZBP1!1.32!19.98!ZBP1;;chr19:46801639..46801699,+!p1@HIF3A!1.31!19.37!HIF3A;;chr6:12011943..12012015,+!p2@HIVEP1!1.30!60.54!HIVEP1;;chr6:391743..391759,+!p1@IRF4!1.30!18.77!IRF4;;chr8:72755203..72755239,-!p10@MSC!1.30!18.77!MSC;;chr3:37217736..37217753,-!p2@LRRFIP2!1.29!76.28!LRRFIP2;;chr6:106534230..106534254,+!p2@PRDM1!1.29!45.40!PRDM1;;chr2:191878812..191878823,-!p2@STAT1!1.29!23.61!STAT1;;chr4:185395633..185395651,-!p2@IRF2!1.28!29.06!IRF2;;chr8:81397820..81397836,+!p2@ZBTB10!1.28!22.40!ZBTB10;;chr2:145275228..145275241,-!p11@ZEB2!1.28!21.79!ZEB2;;chr10:104155455..104155479,+!p1@NFKB2!1.27!248.21!NFKB2;;chr4:106068026..106068084,+!p1@TET2!1.27!153.77!TET2;;chr7:17338324..17338341,+!p3@AHR!1.25!55.70!AHR;;chr1:158979872..158979898,+!p3@IFI16!1.25!51.46!IFI16;;chr1:221052733..221052749,+!p2@HLX!1.25!21.79!HLX;;chr21:40177845..40177863,+!p1@ETS2!1.24!952.29!ETS2;;chr12:11802753..11802834,+!p2@ETV6!1.24!78.70!ETV6;;chr2:68615031..68615055,+!p3@PLEK!1.24!16.35!PLEK;;chr10:3827371..3827386,-!p2@KLF6!1.23!132.58!KLF6;;chr7:106809470..106809481,+!p2@HBP1!1.23!22.40!HBP1;;chr10:64576105..64576133,-!p1@EGR2!1.22!31.48!EGR2;;chr2:70167296..70167306,+!p3@MXD1!1.22!23.61!MXD1;;chr4:81104958..81104981,+!p5@PRDM8!1.22!18.16!PRDM8;;chr2:191885737..191885750,-!p4@STAT1!1.22!15.74!STAT1;;chr9:102584278..102584285,+!p5@NR4A3!1.22!15.74!NR4A3;;chr1:221054853..221054873,+!p9@HLX!1.21!15.13!HLX;;chr1:37947257..37947292,+!p4@ZC3H12A!1.21!15.13!ZC3H12A;;chr1:120190786..120190915,-!p1@ZNF697!1.20!107.16!ZNF697;;chr3:12329397..12329433,+!p2@PPARG!1.20!33.30!PPARG;;chr8:72756063..72756125,-!p1@MSC!1.20!30.27!MSC;;chr8:72756267..72756296,-!p4@MSC!1.20!21.79!MSC;;chr1:25256756..25256774,-!p1@RUNX3!1.19!27.24!RUNX3;;chrX:153305741..153305753,-!p4@MECP2!1.19!14.53!MECP2;;chr7:128577972..128578047,+!p1@IRF5!1.18!22.40!IRF5;;chr2:61108771..61108789,+!p4@REL!1.18!21.19!REL;;chr2:28618532..28618610,+!p4@FOSL2!1.17!23.61!FOSL2;;chr6:34524093..34524135,-!p1@SPDEF!1.17!13.92!SPDEF;;chr8:22550982..22550999,-!p1@EGR3!1.16!38.14!EGR3;;chr12:54785074..54785122,-!p2@ZNF385A!1.16!20.58!ZNF385A;;chrX:24167086..24167111,+!p4@ZFX!1.16!13.32!ZFX;;chrX:153305962..153305995,-!p5@MECP2!1.16!13.32!MECP2;;chr21:34442540..34442560,+!p2@OLIG1!1.16!13.32!OLIG1;;chr6:143266297..143266356,-!p1@HIVEP2!1.15!62.36!HIVEP2;;chr6:12012249..12012266,+!p5@HIVEP1!1.15!23.01!HIVEP1;;chr4:185395590..185395627,-!p3@IRF2!1.15!16.35!IRF2;;chr20:47894569..47894799,-!p1@ZNFX1!1.14!333.58!ZNFX1;;chr6:15246261..15246312,+!p1@JARID2!1.14!305.73!JARID2;;chr21:40177892..40177903,+!p2@ETS2!1.14!50.85!ETS2;;chr10:51575814..51575835,+!p8@NCOA4!1.14!12.71!NCOA4;;chr13:41593392..41593403,-!p7@ELF1!1.14!12.71!ELF1;;chr17:40440177..40440190,+!p6@STAT5A!1.14!12.71!STAT5A;;chr20:48807351..48807384,+!p1@CEBPB!1.13!1276.18!CEBPB;;chr2:231084659..231084721,-!p1@SP110!1.13!290.59!SP110;;chr2:185463247..185463263,+!p1@ZNF804A!1.13!22.40!ZNF804A;;chr9:102584241..102584261,+!p4@NR4A3!1.13!19.37!NR4A3;;chr2:231280954..231280965,+!p2@SP100!1.12!22.40!SP100;;chr8:72756637..72756664,-!p3@MSC!1.12!13.92!MSC;;chr6:36355431..36355466,-!p1@ETV7!1.12!12.11!ETV7;;chr14:75988831..75988847,+!p2@BATF!1.12!12.11!BATF;;chr19:45504688..45504782,+!p1@RELB!1.11!72.04!RELB;;chr18:3449586..3449617,+!p8@TGIF1!1.10!18.77!TGIF1;;chr17:38497662..38497713,+!p4@RARA!1.10!13.32!RARA;;chr8:72755345..72755349,-!p14@MSC!1.10!11.50!MSC;;chr2:192015677..192015691,-!p3@STAT4!1.10!11.50!STAT4;;chr9:110252035..110252057,-!p1@KLF4!1.09!182.83!KLF4;;chr11:113930425..113930471,+!p1@ZBTB16!1.09!16.35!ZBTB16;;chr12:54785054..54785072,-!p4@ZNF385A!1.09!12.71!ZNF385A;;chr7:139762641..139762768,-!p1@PARP12!1.08!149.53!PARP12;;chr3:39195075..39195088,-!p1@CSRNP1!1.08!69.62!CSRNP1;;chr2:208394817..208394834,+!p3@CREB1!1.08!44.80!CREB1;;chr3:187455680..187455700,-!p4@BCL6!1.08!10.90!BCL6;;chr4:103423120..103423142,+!p8@NFKB1!1.08!10.90!NFKB1;;chr19:45251395..45251432,+!p8@BCL3!1.08!10.90!BCL3;;chr10:35484090..35484104,+!p6@CREM!1.08!10.90!CREM;;chr3:170075436..170075520,+!p1@SKIL!1.07!233.08!SKIL;;chr13:41635029..416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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
 |ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000335,FF:0000625,FF:0011108,FF:11865-125B2
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor1.CNhs13470.11865-125B2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor1.CNhs13470.11865-125B2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor1.CNhs13470.11865-125B2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor1.CNhs13470.11865-125B2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor1.CNhs13470.11865-125B2.hg38.nobarcode.ctss.bed.gz
 |id=FF:11865-125B2
 |is_a=EFO:0002091;;FF:0011108
@@ Line 46: / Line 52: @@
 |library_id=CNhs13470
 |library_id_phase_based=2:CNhs13470
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11865
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11865
 |name=CD14+ monocytes - treated with lipopolysaccharide, donor1
 |namespace=
@@ Line 53: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11865-125B2;search_select_hide=table117:FF:11865-125B2
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FF:11865-125B2: Difference between revisions

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Latest revision as of 18:24, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0