FF:11393-118C7: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005940 | ||
| | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005940 | ||
| | |accession_numbers=CAGE;DRX008225;DRR009097;DRZ000522;DRZ001907;DRZ011872;DRZ013257 | ||
| | |accession_numbers_RNASeq=sRNA-Seq;DRX037065;DRR041431;DRZ007073 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000055,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002049,UBERON:0007798,UBERON:0001473,UBERON:0002465,UBERON:0004535,UBERON:0004536,UBERON:0006558,UBERON:0002193,UBERON:0002405,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0002138 | |||
| | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000001,FF:0000049 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr21:39870339..39870443,-!p1@ERG!2.37!235.98!ERG;;chr18:53068911..53068935,-!p4@TCF4!2.31!225.94!TCF4;;chr20:62680984..62680999,-!p1@SOX18!2.16!186.10!SOX18;;chr17:6926362..6926377,+!p1@BCL6B!1.92!81.34!BCL6B;;chr1:214161272..214161322,+!p1@PROX1!1.89!107.11!PROX1;;chr22:19748231..19748317,+!p1@TBX1!1.86!70.96!TBX1;;chr8:10588010..10588030,-!p1@SOX7!1.80!61.59!SOX7;;chr8:55370487..55370503,+!p1@SOX17!1.76!55.90!SOX17;;chr5:71803177..71803255,-!p1@ZNF366!1.73!52.22!ZNF366;;chr12:96588368..96588394,+!p3@ELK3!1.68!122.17!ELK3;;chr9:124991204..124991246,-!p1@LHX6!1.60!38.83!LHX6;;chr13:72441315..72441454,-!p1@DACH1!1.53!64.27!DACH1;;chr7:15726243..15726293,-!p2@MEOX2!1.53!33.14!MEOX2;;chr19:46801639..46801699,+!p1@HIF3A!1.53!32.80!HIF3A;;chr17:46682321..46682362,-!p1@HOXB6!1.53!32.80!HOXB6;;chr18:22932080..22932170,-!p1@ZNF521!1.52!130.21!ZNF521;;chr7:15726296..15726315,-!p1@MEOX2!1.52!32.47!MEOX2;;chr3:169381420..169381535,-!p1@MECOM!1.51!36.48!MECOM;;chr9:14314131..14314147,-!p2@NFIB!1.44!142.59!NFIB;;chr7:115670804..115670825,-!p1@TFEC!1.44!26.44!TFEC;;chr18:53177984..53178004,-!p17@TCF4!1.41!24.77!TCF4;;chr18:53068982..53068993,-!p20@TCF4!1.37!22.43!TCF4;;chr4:146404119..146404158,+!p9@SMAD1!1.36!22.09!SMAD1;;chr10:94449703..94449718,+!p1@HHEX!1.31!73.97!HHEX;;chr4:146403912..146403972,+!p5@SMAD1!1.31!24.77!SMAD1;;chr3:168864315..168864339,-!p2@MECOM!1.29!30.46!MECOM;;chr3:114343039..114343085,-!p8@ZBTB20!1.27!17.74!ZBTB20;;chr2:177053386..177053402,+!p1@HOXD1!1.26!17.07!HOXD1;;chr17:46688334..46688385,-!p1@HOXB7!1.25!24.10!HOXB7;;chr2:46524537..46524553,+!p1@EPAS1!1.22!1496.87!EPAS1;;chrY:21906594..21906622,-!p1@KDM5D!1.21!15.06!KDM5D;;chr20:50159198..50159299,-!p1@NFATC2!1.20!21.76!NFATC2;;chr18:52989031..52989079,-!p2@TCF4!1.19!34.14!TCF4;;chr9:16705069..16705086,-!p3@BNC2!1.19!14.39!BNC2;;chr9:14314566..14314618,-!p1@NFIB!1.18!165.69!NFIB;;chr13:72441074..72441172,-!p2@DACH1!1.17!13.72!DACH1;;chr18:53257001..53257015,-!p5@TCF4!1.15!22.76!TCF4;;chr4:146402843..146402864,+!p3@SMAD1!1.14!25.44!SMAD1;;chr19:53496768..53496799,-!p1@ZNF702P!1.14!19.75!ZNF702P;;chr12:80084137..80084165,-!p10@PAWR!1.12!15.73!PAWR;;chr13:72441506..72441562,-!p3@DACH1!1.12!12.05!DACH1;;chr8:106330656..106330684,+!p1@ZFPM2!1.09!29.46!ZFPM2;;chr2:177001290..177001315,+!p1@HOXD3!1.09!11.38!HOXD3;;chr1:158985493..158985535,+!p4@IFI16!1.08!16.74!IFI16;;chr18:52989565..52989623,-!p9@TCF4!1.08!14.06!TCF4;;chr3:12330560..12330579,+!p1@PPARG!1.08!12.72!PPARG;;chr18:53068940..53068951,-!p21@TCF4!1.07!10.71!TCF4;;chr12:80084167..80084197,-!p5@PAWR!1.05!24.10!PAWR;;chr3:168865194..168865245,-!p3@MECOM!1.05!13.39!MECOM;;chr7:27196267..27196311,-!p1@HOXA7!1.03!9.71!HOXA7;;chr1:200008734..200008765,+!p2@NR5A2!1.00!9.04!NR5A2;;chr2:176994408..176994492,+!p1@HOXD8!1.00!9.04!HOXD8;;chr4:146404160..146404186,+!p13@SMAD1!0.99!8.70!SMAD1;;chr18:22932004..22932021,-!p2@ZNF521!0.99!8.70!ZNF521;;chr10:131762504..131762555,-!p1@EBF3!0.99!8.70!EBF3;;chr18:53255415..53255491,-!p1@TCF4!0.98!74.31!TCF4;;chr5:88178983..88179012,-!p1@MEF2C!0.98!68.28!MEF2C;;chr1:158979686..158979745,+!p1@IFI16!0.96!273.13!IFI16;;chr9:14314106..14314119,-!p5@NFIB!0.96!15.06!NFIB;;chrY:2803415..2803468,+!p1@ZFY!0.96!8.03!ZFY;;chr18:52989001..52989030,-!p10@TCF4!0.95!8.70!TCF4;;chr22:38597987..38598021,+!p2@MAFF!0.94!49.20!MAFF;;chr19:13213511..13213545,-!p2@LYL1!0.94!8.37!LYL1;;chr17:41739283..41739297,-!p1@MEOX1!0.94!7.70!MEOX1;;chr18:22931979..22931992,-!p3@ZNF521!0.94!7.70!ZNF521;;chr8:106330696..106330719,+!p2@ZFPM2!0.93!9.71!ZFPM2;;chr3:114343826..114343869,-!p4@ZBTB20!0.90!14.39!ZBTB20;;chr17:46690839..46690884,-!p1@HOXB8!0.90!7.03!HOXB8;;chr18:53068893..53068902,-!p28@TCF4!0.90!7.03!TCF4;;chr3:178789522..178789564,-!p2@ZMAT3!0.89!52.89!ZMAT3;;chr2:176981499..176981522,+!p2@HOXD10!0.89!6.69!HOXD10;;chr4:146401920..146401926,+!p14@SMAD1!0.89!6.69!SMAD1;;chr7:15726220..15726236,-!p4@MEOX2!0.89!6.69!MEOX2;;chr6:21593973..21593988,+!p1@SOX4!0.88!247.36!SOX4;;chr9:14313893..14313908,-!p7@NFIB!0.87!9.37!NFIB;;chr12:80084018..80084035,-!p17@PAWR!0.87!6.36!PAWR;;chr3:128206762..128206781,-!p2@GATA2!0.86!41.51!GATA2;;chr7:113726357..113726443,+!p1@FOXP2!0.85!10.71!FOXP2;;chr7:15726176..15726191,-!p3@MEOX2!0.85!6.02!MEOX2;;chr22:19746969..19746987,+!p2@TBX1!0.85!6.02!TBX1;;chr3:168864383..168864400,-!p7@MECOM!0.85!6.02!MECOM;;chr11:128563652..128563689,+!p3@FLI1!0.85!6.02!FLI1;;chr9:14314066..14314075,-!p11@NFIB!0.85!6.02!NFIB;;chr9:14314946..14314983,-!p8@NFIB!0.85!6.02!NFIB;;chr17:46655672..46655697,-!p3@HOXB4!0.85!6.02!HOXB4;;chr15:57210961..57211012,+!p3@TCF12!0.84!20.08!TCF12;;chr1:205601064..205601087,-!p4@ELK4!0.84!12.05!ELK4;;chr19:53496806..53496848,-!p2@ZNF702P!0.83!9.04!ZNF702P;;chr19:45908292..45908374,-!p1@PPP1R13L!0.82!53.89!PPP1R13L;;chr10:35484804..35484902,+!p2@CREM!0.82!22.76!CREM;;chr20:50721803..50721857,-!p2@ZFP64!0.82!9.04!ZFP64;;chr10:31288398..31288455,-!p2@ZNF438!0.82!6.69!ZNF438;;chr13:41240737..41240787,-!p1@FOXO1!0.81!69.62!FOXO1;;chr3:114343768..114343822,-!p1@ZBTB20!0.81!25.44!ZBTB20;;chr2:46524897..46524911,+!p2@EPAS1!0.81!16.07!EPAS1;;chr17:46687959..46688007,-!p2@HOXB7!0.81!7.70!HOXB7;;chr17:1959369..1959388,+!p2@HIC1!0.80!15.06!HIC1;;chr10:45495946..45495976,+!p2@ZNF22!0.80!5.36!ZNF22;;chr7:27205136..27205164,-!p1@HOXA9!0.80!5.36!HOXA9;;chr19:46800289..46800327,+!p2@HIF3A!0.80!5.36!HIF3A;;chr1:244214577..244214593,+!p1@ZNF238!0.80!5.36!ZNF238;;chr12:80084303..80084332,-!p1@PAWR!0.79!32.80!PAWR;;chr16:69599899..69599919,+!p2@NFAT5!0.78!62.26!NFAT5;;chr9:14314522..14314556,-!p3@NFIB!0.78!12.38!NFIB;;chr2:176987441..176987454,+!p1@HOXD9!0.78!5.02!HOXD9;;chr1:200011711..200011752,+!p3@NR5A2!0.78!5.02!NR5A2;;chr11:128563948..128564003,+!p1@FLI1!0.77!65.27!FLI1;;chr4:146402997..146403020,+!p1@SMAD1!0.77!37.49!SMAD1;;chr6:106534230..106534254,+!p2@PRDM1!0.77!13.05!PRDM1;;chr18:53255839..53255854,-!p13@TCF4!0.76!5.69!TCF4;;chr18:53177899..53177918,-!p33@TCF4!0.75!4.69!TCF4;;chr6:21597765..21597779,+!p2@SOX4!0.73!39.50!SOX4;;chr2:85360499..85360598,+!p1@TCF7L1!0.73!27.45!TCF7L1;;chr18:53257027..53257052,-!p3@TCF4!0.73!19.08!TCF4;;chr18:53089538..53089578,-!p14@TCF4!0.73!4.35!TCF4;;chr12:80084120..80084136,-!p15@PAWR!0.73!4.35!PAWR;;chr13:72440772..72440847,-!p5@DACH1!0.73!4.35!DACH1;;chr7:27192185..27192209,-!p1@HOXA3!0.73!4.35!HOXA3;;chr3:33482052..33482116,-!p2@UBP1!0.71!6.69!UBP1;;chr6:106534192..106534224,+!p1@PRDM1!0.70!12.38!PRDM1;;chr22:41697497..41697515,+!p2@ZC3H7B!0.70!12.05!ZC3H7B;;chr12:80084279..80084293,-!p8@PAWR!0.70!7.03!PAWR;;chr15:96876966..96877017,+!p12@NR2F2!0.70!6.02!NR2F2;;chr17:46659728..46659749,-!p3@HOXB3!0.70!4.02!HOXB3;;chr1:47695003..47695042,-!p2@TAL1!0.70!4.02!TAL1;;chr6:130339710..130339745,+!p1@L3MBTL3!0.68!34.81!L3MBTL3;;chr9:3525968..3526016,-!p1@RFX3!0.68!24.77!RFX3;;chr4:38665810..38665827,+!p1@KLF3!0.67!62.59!KLF3;;chr11:65430554..65430579,-!p3@RELA!0.67!10.38!RELA;;chr19:35455110..35455149,-!p1@ZNF792!0.67!7.70!ZNF792;;chr17:46691732..46691766,-!p4@HOXB8!0.67!3.68!HOXB8;;chr10:31288370..31288393,-!p3@ZNF438!0.67!3.68!ZNF438;;chr5:88119580..88119602,-!p17@MEF2C!0.67!3.68!MEF2C;;chr1:47697539..47697573,-!p3@TAL1!0.67!3.68!TAL1;;chr2:46602901..46602926,+!p7@EPAS1!0.66!5.02!EPAS1;;chr5:132299008..132299026,-!p5@AFF4!0.65!8.70!AFF4;;chr12:80084862..80084884,-!p7@PAWR!0.65!8.03!PAWR;;chr11:113930291..113930339,+!p2@ZBTB16!0.65!6.02!ZBTB16;;chr15:96874012..96874042,+!p2@NR2F2!0.64!35.48!NR2F2;;chr9:3525910..3525955,-!p4@RFX3!0.64!11.38!RFX3;;chr17:46655704..46655718,-!p2@HOXB4!0.64!5.36!HOXB4;;chr1:23696448..23696453,-!p5@ZNF436!0.64!4.35!ZNF436;;chr18:53069219..53069253,-!p35@TCF4!0.64!3.35!TCF4;;chr13:72440434..72440479,-!p6@DACH1!0.64!3.35!DACH1;;chr14:74256787..74256858,-!p6@C14orf43!0.64!3.35!C14orf43;;chr22:19747040..19747054,+!p3@TBX1!0.64!3.35!TBX1;;chr2:176987463..176987479,+!p2@HOXD9!0.64!3.35!HOXD9;;chr4:146402827..146402839,+!p10@SMAD1!0.64!3.35!SMAD1;;chr15:96873984..96873999,+!p3@NR2F2!0.63!28.12!NR2F2;;chr6:7108569..7108683,+!p3@RREB1!0.63!14.73!RREB1;;chr10:94449675..94449694,+!p2@HHEX!0.63!10.04!HHEX;;chr19:49864746..49864780,-!p2@TEAD2!0.63!4.69!TEAD2;;chr13:41240717..41240735,-!p2@FOXO1!0.62!25.44!FOXO1;;chr11:128392273..128392308,-!p2@ETS1!0.62!15.73!ETS1;;chr15:60884706..60884743,-!p1@RORA!0.61!18.74!RORA;;chr5:88179195..88179224,-!p3@MEF2C!0.61!5.36!MEF2C;;chr11:113930425..113930471,+!p1@ZBTB16!0.61!4.69!ZBTB16;;chr1:8877692..8877732,-!p1@RERE!0.60!28.79!RERE;;chr6:28092375..28092412,+!p1@ZSCAN16!0.60!14.73!ZSCAN16;;chr4:146402966..146402985,+!p2@SMAD1!0.60!13.05!SMAD1;;chr15:60884747..60884774,-!p3@RORA!0.60!8.37!RORA;;chr2:231280954..231280965,+!p2@SP100!0.60!6.02!SP100;;chr22:41697484..41697496,+!p3@ZC3H7B!0.60!4.02!ZC3H7B;;chr3:21792682..21792720,-!p1@ZNF385D!0.60!3.01!ZNF385D;;chr1:214161328..214161348,+!p2@PROX1!0.60!3.01!PROX1;;chr10:45496320..45496336,+!p3@ZNF22!0.60!3.01!ZNF22;;chr10:94451574..94451587,+!p6@HHEX!0.60!3.01!HHEX;;chr17:46675558..46675577,-!p2@HOXB6!0.60!3.01!HOXB6;;chr18:53069201..53069216,-!p39@TCF4!0.60!3.01!TCF4;;chr15:96873921..96873946,+!p1@NR2F2!0.59!99.08!NR2F2;;chr2:238536207..238536290,+!p2@LRRFIP1!0.59!34.14!LRRFIP1;;chr7:26191809..26191890,+!p1@NFE2L3!0.59!17.07!NFE2L3;;chr5:124084493..124084524,-!p2@ZNF608!0.59!7.36!ZNF608;;chr4:206390..206444,+!p1@ZNF876P!0.59!5.69!ZNF876P;;chr19:13213662..13213686,-!p1@LYL1!0.59!4.69!LYL1;;chr7:64467057..64467078,-!p1@ZNF117!0.58!64.60!ZNF117;;chr10:31608127..31608156,+!p1@ZEB1!0.58!63.93!ZEB1;;chr8:146228226..146228264,-!p2@ZNF252!0.58!7.70!ZNF252P;;chr18:5295679..5295734,-!p2@ZFP161!0.58!7.03!ZFP161;;chr1:23696308..23696339,-!p2@ZNF436!0.58!6.69!ZNF436;;chr12:49454026..49454049,-!p9@MLL2!0.58!3.35!MLL2;;chr10:3827389..3827408,-!p1@KLF6!0.57!258.40!KLF6;;chr6:126112074..126112144,+!p1@NCOA7!0.57!44.85!NCOA7;;chr17:1958388..1958404,+!p1@HIC1!0.57!21.09!HIC1;;chr1:8763440..8763460,-!p2@RERE!0.57!16.74!RERE;;chr4:87857474..87857489,+!p7@AFF1!0.57!5.36!AFF1;;chr2:177001366..177001379,+!p4@HOXD3!0.57!2.68!HOXD3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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002138;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001473;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002465;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0000222,CL:0005022 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 66: | Line 43: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|top_motifs= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor3.CNhs11906.11393-118C7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor3.CNhs11906.11393-118C7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor3.CNhs11906.11393-118C7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor3.CNhs11906.11393-118C7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor3.CNhs11906.11393-118C7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11393-118C7 | |||
|is_a=EFO:0002091;;FF:0000049 | |||
|is_obsolete= | |||
|library_id=CNhs11906 | |||
|library_id_phase_based=2:CNhs11906 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11393 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GTGGCC.11393 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11393 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GTGGCC.11393 | |||
|name=Endothelial Cells - Lymphatic, donor3 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs11906,LSID834,release010,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=SRhi10005,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0622531037696493,0,-0.0547909983374786,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0.452334322393246,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.145899716966013,0,0,0,0,0,0,0,0,0.0870705458151831,0,0,0,0.427096930230649,0.12539036754857,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0250558083060374,0,0,0,0,0,0,0.108681490608081,0,0,0,0.284818395683635,0.178630029292963,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0.12539036754857,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0290167736261088,0.12539036754857,0,0,-0.00623171656703025,0.0656335935384257,0,0,-0.0364132912814638,0,0,0 | |||
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| |||
|rna_box=118 | |||
|rna_catalog_number=SC2015 | |||
|rna_concentration=0.255 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0 | |||
|rna_lot_number=3676 | |||
|rna_od260/230= | |||
|rna_od260/280= | |||
|rna_position=C7 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=118C7 | |||
|rna_weight_ug=10 | |||
|rnaseq_library_id=SRhi10005.GTGGCC | |||
|sample_age=fetal | |||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |||
|sample_cell_line= | |||
|sample_cell_lot=N/A | |||
|sample_cell_type=endothelial cell, lymphatic | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company=Sciencell/3H | |||
|sample_description= | |||
|sample_dev_stage=fetus | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity=unknown | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.53497011679443e-225!GO:0043226;organelle;4.95299636628884e-178!GO:0043229;intracellular organelle;2.1275477865712e-177!GO:0043231;intracellular membrane-bound organelle;7.19101103203693e-175!GO:0043227;membrane-bound organelle;9.51710946666654e-175!GO:0005737;cytoplasm;6.63294937810803e-171!GO:0044444;cytoplasmic part;1.12012332404158e-117!GO:0044422;organelle part;9.20339372973403e-116!GO:0044446;intracellular organelle part;2.95030152977017e-114!GO:0044238;primary metabolic process;4.96351731911042e-87!GO:0044237;cellular metabolic process;1.82928242143576e-84!GO:0043170;macromolecule metabolic process;2.75744397868681e-84!GO:0005515;protein binding;8.27748424912966e-84!GO:0032991;macromolecular complex;4.27167179026602e-74!GO:0005634;nucleus;2.28748990391065e-70!GO:0044428;nuclear part;5.41208115114289e-61!GO:0030529;ribonucleoprotein complex;6.11641225892585e-61!GO:0003723;RNA binding;7.00394878279433e-60!GO:0043233;organelle lumen;1.67828271858075e-59!GO:0031974;membrane-enclosed lumen;1.67828271858075e-59!GO:0019538;protein metabolic process;4.43838521494287e-54!GO:0043283;biopolymer metabolic process;1.19175625195137e-51!GO:0016043;cellular component organization and biogenesis;1.06283564257921e-48!GO:0031090;organelle membrane;9.21198578116646e-48!GO:0044267;cellular protein metabolic process;1.33259607102261e-46!GO:0044260;cellular macromolecule metabolic process;1.3933241302298e-46!GO:0033036;macromolecule localization;4.35379804053068e-45!GO:0015031;protein transport;1.50179696946488e-44!GO:0005739;mitochondrion;1.61919064098446e-44!GO:0045184;establishment of protein localization;4.05475417959921e-41!GO:0008104;protein localization;4.44870798655428e-41!GO:0010467;gene expression;4.91728201905274e-39!GO:0006396;RNA processing;2.27127090872957e-38!GO:0031981;nuclear lumen;3.03278203405313e-38!GO:0043234;protein complex;3.05750602835899e-38!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.721141368739e-37!GO:0006412;translation;2.15700615246921e-35!GO:0046907;intracellular transport;2.36676405584477e-35!GO:0005829;cytosol;2.40581815404181e-34!GO:0016071;mRNA metabolic process;6.86730072639915e-34!GO:0005840;ribosome;1.51921929478963e-33!GO:0031967;organelle envelope;2.95360780121633e-32!GO:0031975;envelope;6.45236681311857e-32!GO:0008380;RNA splicing;1.38262705330003e-30!GO:0044429;mitochondrial part;2.35951625365566e-30!GO:0006886;intracellular protein transport;3.64454401596316e-30!GO:0006996;organelle organization and biogenesis;6.13517036717014e-30!GO:0003735;structural constituent of ribosome;3.36498284855336e-29!GO:0006397;mRNA processing;1.45038850110595e-28!GO:0065003;macromolecular complex assembly;2.04453465684212e-27!GO:0009059;macromolecule biosynthetic process;3.50163570039989e-27!GO:0009058;biosynthetic process;1.04527381232799e-26!GO:0000166;nucleotide binding;6.50544062353173e-26!GO:0005654;nucleoplasm;1.70080849772614e-25!GO:0033279;ribosomal subunit;2.71657300954261e-25!GO:0044249;cellular biosynthetic process;1.29613325547421e-24!GO:0022607;cellular component assembly;2.05956512672215e-24!GO:0043228;non-membrane-bound organelle;4.96020973451662e-24!GO:0043232;intracellular non-membrane-bound organelle;4.96020973451662e-24!GO:0051649;establishment of cellular localization;5.13057105852687e-24!GO:0051641;cellular localization;5.64908135174618e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.71071415405353e-23!GO:0012505;endomembrane system;4.6895467195144e-23!GO:0005681;spliceosome;1.45276425262297e-21!GO:0006259;DNA metabolic process;2.47277375367745e-21!GO:0005740;mitochondrial envelope;2.53474945112698e-21!GO:0006512;ubiquitin cycle;1.19821550429036e-20!GO:0044451;nucleoplasm part;1.30140109566587e-20!GO:0043412;biopolymer modification;1.31905654907877e-20!GO:0016462;pyrophosphatase activity;1.35063262615782e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.40235384453377e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.95009107188342e-20!GO:0031966;mitochondrial membrane;2.42285951807573e-20!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.54609062105352e-20!GO:0003676;nucleic acid binding;3.5726589826931e-20!GO:0017111;nucleoside-triphosphatase activity;4.39961246056051e-20!GO:0005794;Golgi apparatus;9.99890765378941e-20!GO:0032553;ribonucleotide binding;2.03059727436525e-19!GO:0032555;purine ribonucleotide binding;2.03059727436525e-19!GO:0016874;ligase activity;2.85521308802388e-19!GO:0019866;organelle inner membrane;3.74647499830202e-19!GO:0016192;vesicle-mediated transport;4.16570737715858e-19!GO:0005783;endoplasmic reticulum;4.32261892166898e-19!GO:0016070;RNA metabolic process;5.42520999160834e-19!GO:0006464;protein modification process;7.09541311170268e-19!GO:0017076;purine nucleotide binding;1.38520046783899e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;2.10507079431361e-18!GO:0019941;modification-dependent protein catabolic process;3.87587935184092e-18!GO:0043632;modification-dependent macromolecule catabolic process;3.87587935184092e-18!GO:0006511;ubiquitin-dependent protein catabolic process;4.21929990539006e-18!GO:0006457;protein folding;5.17626234893266e-18!GO:0044445;cytosolic part;5.32853703429801e-18!GO:0044257;cellular protein catabolic process;5.36679936621194e-18!GO:0044265;cellular macromolecule catabolic process;8.51949132379026e-18!GO:0006119;oxidative phosphorylation;1.77404993121444e-17!GO:0008134;transcription factor binding;1.83210594281892e-17!GO:0005743;mitochondrial inner membrane;2.39946209787335e-17!GO:0007049;cell cycle;3.94802835037118e-17!GO:0048770;pigment granule;6.7167433589271e-17!GO:0042470;melanosome;6.7167433589271e-17!GO:0043285;biopolymer catabolic process;1.32739317906284e-16!GO:0043687;post-translational protein modification;2.54201785165315e-16!GO:0022618;protein-RNA complex assembly;3.60174516640718e-16!GO:0048193;Golgi vesicle transport;6.53635483512459e-16!GO:0050794;regulation of cellular process;6.61851320875195e-16!GO:0030163;protein catabolic process;9.00099186194424e-16!GO:0009057;macromolecule catabolic process;1.88027426211173e-15!GO:0005524;ATP binding;4.71359234257425e-15!GO:0044432;endoplasmic reticulum part;4.98037098794949e-15!GO:0032559;adenyl ribonucleotide binding;5.54898360046083e-15!GO:0006605;protein targeting;3.11364968661179e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.37419468412092e-14!GO:0030554;adenyl nucleotide binding;4.41750345891654e-14!GO:0015935;small ribosomal subunit;1.32597779341518e-13!GO:0006974;response to DNA damage stimulus;1.35980126114877e-13!GO:0044455;mitochondrial membrane part;3.33686770729142e-13!GO:0008135;translation factor activity, nucleic acid binding;4.53220819472829e-13!GO:0005730;nucleolus;8.76110118658805e-13!GO:0016604;nuclear body;1.18848068798254e-12!GO:0012501;programmed cell death;1.28121800244433e-12!GO:0044248;cellular catabolic process;1.29471822215101e-12!GO:0051082;unfolded protein binding;1.48951471936806e-12!GO:0006915;apoptosis;1.78633153499041e-12!GO:0015934;large ribosomal subunit;2.09140009456313e-12!GO:0022402;cell cycle process;2.94337971184042e-12!GO:0008639;small protein conjugating enzyme activity;2.95088844567126e-12!GO:0004842;ubiquitin-protein ligase activity;4.80885995845293e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;6.71488027858885e-12!GO:0000375;RNA splicing, via transesterification reactions;6.71488027858885e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.71488027858885e-12!GO:0019787;small conjugating protein ligase activity;8.92550350034404e-12!GO:0005635;nuclear envelope;9.22046035430834e-12!GO:0031980;mitochondrial lumen;1.07898492779796e-11!GO:0005759;mitochondrial matrix;1.07898492779796e-11!GO:0016887;ATPase activity;1.5129463970167e-11!GO:0003712;transcription cofactor activity;1.5129463970167e-11!GO:0051186;cofactor metabolic process;1.8249376826645e-11!GO:0042623;ATPase activity, coupled;2.19392166653732e-11!GO:0005746;mitochondrial respiratory chain;2.29197283174903e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.21162700357997e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.22607312412929e-11!GO:0050789;regulation of biological process;3.2281833462752e-11!GO:0008219;cell death;3.50259001529836e-11!GO:0016265;death;3.50259001529836e-11!GO:0008565;protein transporter activity;3.74977710366097e-11!GO:0005793;ER-Golgi intermediate compartment;5.48950360038062e-11!GO:0006281;DNA repair;5.85597267977917e-11!GO:0003743;translation initiation factor activity;6.78756788870875e-11!GO:0004386;helicase activity;7.26709052009385e-11!GO:0006461;protein complex assembly;1.06841190839817e-10!GO:0031965;nuclear membrane;1.15549402145371e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.17326594464372e-10!GO:0016607;nuclear speck;1.3273882331959e-10!GO:0050136;NADH dehydrogenase (quinone) activity;1.72969409706544e-10!GO:0003954;NADH dehydrogenase activity;1.72969409706544e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.72969409706544e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.25477866791622e-10!GO:0006413;translational initiation;2.61404716075448e-10!GO:0016881;acid-amino acid ligase activity;2.76175185724523e-10!GO:0005789;endoplasmic reticulum membrane;2.96990697985218e-10!GO:0006446;regulation of translational initiation;3.87489033488436e-10!GO:0044453;nuclear membrane part;4.63391167336955e-10!GO:0009719;response to endogenous stimulus;4.88117801744524e-10!GO:0051726;regulation of cell cycle;5.36428080150217e-10!GO:0048523;negative regulation of cellular process;9.4443312827273e-10!GO:0000074;regulation of progression through cell cycle;1.00736613004506e-09!GO:0006913;nucleocytoplasmic transport;1.55886741126756e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.66021682945086e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.7010921219437e-09!GO:0042775;organelle ATP synthesis coupled electron transport;2.4896346079525e-09!GO:0042773;ATP synthesis coupled electron transport;2.4896346079525e-09!GO:0044431;Golgi apparatus part;2.78920152931712e-09!GO:0006793;phosphorus metabolic process;2.78920152931712e-09!GO:0006796;phosphate metabolic process;2.78920152931712e-09!GO:0031252;leading edge;2.82686810634069e-09!GO:0031988;membrane-bound vesicle;3.05188058137792e-09!GO:0008026;ATP-dependent helicase activity;3.56229292951034e-09!GO:0051169;nuclear transport;3.8451516803329e-09!GO:0016023;cytoplasmic membrane-bound vesicle;4.62462823891501e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.77643264066181e-09!GO:0051276;chromosome organization and biogenesis;5.05984833547764e-09!GO:0009259;ribonucleotide metabolic process;5.13924844315304e-09!GO:0030964;NADH dehydrogenase complex (quinone);6.81847419361965e-09!GO:0045271;respiratory chain complex I;6.81847419361965e-09!GO:0005747;mitochondrial respiratory chain complex I;6.81847419361965e-09!GO:0006888;ER to Golgi vesicle-mediated transport;7.74034883541976e-09!GO:0006732;coenzyme metabolic process;7.97493312790554e-09!GO:0000278;mitotic cell cycle;8.03653664517958e-09!GO:0006163;purine nucleotide metabolic process;8.25437803917729e-09!GO:0016310;phosphorylation;9.65144247541624e-09!GO:0006366;transcription from RNA polymerase II promoter;9.7125947615355e-09!GO:0005768;endosome;1.02376640766206e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.03578292379855e-08!GO:0009150;purine ribonucleotide metabolic process;1.13300095776165e-08!GO:0030036;actin cytoskeleton organization and biogenesis;1.31552036956204e-08!GO:0005761;mitochondrial ribosome;1.78653234552784e-08!GO:0000313;organellar ribosome;1.78653234552784e-08!GO:0031982;vesicle;2.23059107541856e-08!GO:0048519;negative regulation of biological process;2.55441132486597e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.59563853821502e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;2.72462198602238e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.34906830273819e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.5505982338398e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.91330353487547e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.12949184296779e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.12949184296779e-08!GO:0031410;cytoplasmic vesicle;4.5673865486851e-08!GO:0009141;nucleoside triphosphate metabolic process;5.95161226391489e-08!GO:0005643;nuclear pore;6.29772003758215e-08!GO:0009056;catabolic process;6.4440609602041e-08!GO:0042254;ribosome biogenesis and assembly;6.82251319754972e-08!GO:0019899;enzyme binding;6.90712850182438e-08!GO:0006403;RNA localization;7.6278235812198e-08!GO:0006323;DNA packaging;8.04729780984677e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.71002816235992e-08!GO:0042981;regulation of apoptosis;9.26967607774534e-08!GO:0006164;purine nucleotide biosynthetic process;9.67515069177894e-08!GO:0065007;biological regulation;1.07786624211412e-07!GO:0050657;nucleic acid transport;1.1126187966847e-07!GO:0051236;establishment of RNA localization;1.1126187966847e-07!GO:0050658;RNA transport;1.1126187966847e-07!GO:0043067;regulation of programmed cell death;1.12695928243706e-07!GO:0015986;ATP synthesis coupled proton transport;1.28926320678159e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.28926320678159e-07!GO:0051246;regulation of protein metabolic process;1.32070492826982e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.32668851355154e-07!GO:0030029;actin filament-based process;1.34235463508316e-07!GO:0005773;vacuole;1.34235463508316e-07!GO:0019829;cation-transporting ATPase activity;1.50692677327479e-07!GO:0046034;ATP metabolic process;1.72868513540388e-07!GO:0019222;regulation of metabolic process;1.78607163354272e-07!GO:0032446;protein modification by small protein conjugation;1.79862670731817e-07!GO:0009260;ribonucleotide biosynthetic process;1.84256791779433e-07!GO:0003924;GTPase activity;1.90467931407261e-07!GO:0000139;Golgi membrane;2.12490148733197e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.63932014583807e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.63932014583807e-07!GO:0051301;cell division;3.42054369265558e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.25249414633846e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.25249414633846e-07!GO:0065002;intracellular protein transport across a membrane;4.26088125986927e-07!GO:0006260;DNA replication;4.37374103288416e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.65585735947526e-07!GO:0016567;protein ubiquitination;4.78251931581058e-07!GO:0005525;GTP binding;4.95271586933522e-07!GO:0005694;chromosome;5.03541723945852e-07!GO:0009055;electron carrier activity;5.57912795376955e-07!GO:0007264;small GTPase mediated signal transduction;5.58188603395379e-07!GO:0005788;endoplasmic reticulum lumen;5.58835331927495e-07!GO:0009060;aerobic respiration;6.32210269638073e-07!GO:0045786;negative regulation of progression through cell cycle;6.79046461926136e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.93614750635128e-07!GO:0017038;protein import;7.26581846354936e-07!GO:0046930;pore complex;7.28117499674755e-07!GO:0048475;coated membrane;8.22266335333317e-07!GO:0030117;membrane coat;8.22266335333317e-07!GO:0030120;vesicle coat;8.61959180300553e-07!GO:0030662;coated vesicle membrane;8.61959180300553e-07!GO:0016787;hydrolase activity;9.4940020522603e-07!GO:0005770;late endosome;9.83826612807512e-07!GO:0016568;chromatin modification;1.11201784837724e-06!GO:0007243;protein kinase cascade;1.33593793424411e-06!GO:0000151;ubiquitin ligase complex;1.44454164146622e-06!GO:0016044;membrane organization and biogenesis;1.58076177184082e-06!GO:0000323;lytic vacuole;1.59818582841963e-06!GO:0005764;lysosome;1.59818582841963e-06!GO:0006754;ATP biosynthetic process;1.63400250458952e-06!GO:0006753;nucleoside phosphate metabolic process;1.63400250458952e-06!GO:0007010;cytoskeleton organization and biogenesis;1.73894184856606e-06!GO:0003713;transcription coactivator activity;1.79548650590684e-06!GO:0045333;cellular respiration;2.29323637341346e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.5478023222715e-06!GO:0004812;aminoacyl-tRNA ligase activity;2.5478023222715e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.5478023222715e-06!GO:0015630;microtubule cytoskeleton;2.5478023222715e-06!GO:0043038;amino acid activation;3.14338729098632e-06!GO:0006418;tRNA aminoacylation for protein translation;3.14338729098632e-06!GO:0043039;tRNA aminoacylation;3.14338729098632e-06!GO:0006399;tRNA metabolic process;3.34075646851548e-06!GO:0051028;mRNA transport;3.68794305171925e-06!GO:0005769;early endosome;3.84081750006452e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.53168283447351e-06!GO:0032561;guanyl ribonucleotide binding;4.97831075035496e-06!GO:0019001;guanyl nucleotide binding;4.97831075035496e-06!GO:0009117;nucleotide metabolic process;5.32391894537898e-06!GO:0043069;negative regulation of programmed cell death;5.46236312144088e-06!GO:0051188;cofactor biosynthetic process;5.51621721520437e-06!GO:0005813;centrosome;6.3261674101398e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.94386947687535e-06!GO:0044440;endosomal part;7.34570802003526e-06!GO:0010008;endosome membrane;7.34570802003526e-06!GO:0003724;RNA helicase activity;7.34570802003526e-06!GO:0003697;single-stranded DNA binding;7.56535193068667e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.57784074266367e-06!GO:0043066;negative regulation of apoptosis;7.71939593999705e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.87714676020341e-06!GO:0030532;small nuclear ribonucleoprotein complex;8.07223096876742e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.29723971549804e-06!GO:0006613;cotranslational protein targeting to membrane;9.1827981814623e-06!GO:0006099;tricarboxylic acid cycle;1.02600084254494e-05!GO:0046356;acetyl-CoA catabolic process;1.02600084254494e-05!GO:0016740;transferase activity;1.03861462083139e-05!GO:0005798;Golgi-associated vesicle;1.05235249479182e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.08023034779533e-05!GO:0006916;anti-apoptosis;1.10080295509227e-05!GO:0043566;structure-specific DNA binding;1.11764141809406e-05!GO:0000245;spliceosome assembly;1.13924062192671e-05!GO:0044427;chromosomal part;1.20877618886224e-05!GO:0016564;transcription repressor activity;1.23282298661077e-05!GO:0003714;transcription corepressor activity;1.41565810804321e-05!GO:0008047;enzyme activator activity;1.52276626959238e-05!GO:0008092;cytoskeletal protein binding;1.58107699529132e-05!GO:0000087;M phase of mitotic cell cycle;1.72748715302499e-05!GO:0005667;transcription factor complex;1.78942947757876e-05!GO:0022403;cell cycle phase;1.9376088574701e-05!GO:0005815;microtubule organizing center;2.28877519738309e-05!GO:0007067;mitosis;2.37900937806026e-05!GO:0006084;acetyl-CoA metabolic process;2.39860029189567e-05!GO:0048471;perinuclear region of cytoplasm;2.55706847214864e-05!GO:0051170;nuclear import;2.56522291000116e-05!GO:0007005;mitochondrion organization and biogenesis;2.57418193188433e-05!GO:0004298;threonine endopeptidase activity;2.94456305591223e-05!GO:0045259;proton-transporting ATP synthase complex;3.74341905661237e-05!GO:0030867;rough endoplasmic reticulum membrane;4.01427311668151e-05!GO:0006606;protein import into nucleus;4.22027778237697e-05!GO:0051187;cofactor catabolic process;4.48424081561232e-05!GO:0005083;small GTPase regulator activity;5.10618130292231e-05!GO:0031323;regulation of cellular metabolic process;5.90345098258659e-05!GO:0006333;chromatin assembly or disassembly;6.15240049217815e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.1698665019633e-05!GO:0006752;group transfer coenzyme metabolic process;6.66130301769664e-05!GO:0016563;transcription activator activity;6.86698025011516e-05!GO:0007265;Ras protein signal transduction;6.9254866857574e-05!GO:0009108;coenzyme biosynthetic process;7.06730664167698e-05!GO:0006364;rRNA processing;7.4377776787179e-05!GO:0031324;negative regulation of cellular metabolic process;7.52012605121837e-05!GO:0030027;lamellipodium;8.91145023790087e-05!GO:0009109;coenzyme catabolic process;8.93235640745396e-05!GO:0005096;GTPase activator activity;9.65759162639016e-05!GO:0019867;outer membrane;0.000106404829650542!GO:0031968;organelle outer membrane;0.000106404829650542!GO:0016072;rRNA metabolic process;0.00010935869844831!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000117150307495394!GO:0001726;ruffle;0.00012432661427296!GO:0065009;regulation of a molecular function;0.000127804319735694!GO:0048522;positive regulation of cellular process;0.000129050214818475!GO:0043623;cellular protein complex assembly;0.000130934492921358!GO:0030133;transport vesicle;0.000148947512877348!GO:0000785;chromatin;0.000164077656194403!GO:0045454;cell redox homeostasis;0.000175275884743541!GO:0009892;negative regulation of metabolic process;0.000180423364841809!GO:0016853;isomerase activity;0.00018237210122288!GO:0008186;RNA-dependent ATPase activity;0.00018626160950268!GO:0006897;endocytosis;0.000230937626568385!GO:0010324;membrane invagination;0.000230937626568385!GO:0008654;phospholipid biosynthetic process;0.000243154997082062!GO:0006612;protein targeting to membrane;0.0002801259004264!GO:0005741;mitochondrial outer membrane;0.000280501230138747!GO:0033116;ER-Golgi intermediate compartment membrane;0.000305087736534544!GO:0051427;hormone receptor binding;0.00033557987869765!GO:0006350;transcription;0.000337852023956158!GO:0043021;ribonucleoprotein binding;0.000351877949961824!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000360352830835329!GO:0015399;primary active transmembrane transporter activity;0.000360352830835329!GO:0051789;response to protein stimulus;0.000360352830835329!GO:0006986;response to unfolded protein;0.000360352830835329!GO:0042802;identical protein binding;0.000386237685769026!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000444890141261797!GO:0006891;intra-Golgi vesicle-mediated transport;0.000446250899698079!GO:0005885;Arp2/3 protein complex;0.000453499738488823!GO:0030695;GTPase regulator activity;0.000465359874673856!GO:0008250;oligosaccharyl transferase complex;0.000502591646987223!GO:0006950;response to stress;0.000521173706278164!GO:0005905;coated pit;0.000521173706278164!GO:0016363;nuclear matrix;0.000543357577614496!GO:0004004;ATP-dependent RNA helicase activity;0.000561811050957258!GO:0045045;secretory pathway;0.000569269144580552!GO:0065004;protein-DNA complex assembly;0.000585991443292863!GO:0016197;endosome transport;0.000588430628667285!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000597249528904127!GO:0005048;signal sequence binding;0.000611494830525668!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000612570122005208!GO:0035257;nuclear hormone receptor binding;0.000619157478771092!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000632761502106884!GO:0007242;intracellular signaling cascade;0.000646323935485366!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000651189480675704!GO:0051168;nuclear export;0.000662966532061189!GO:0016779;nucleotidyltransferase activity;0.000672203076198168!GO:0010468;regulation of gene expression;0.000732250977710403!GO:0019843;rRNA binding;0.000790409495389346!GO:0051329;interphase of mitotic cell cycle;0.000835088903157818!GO:0051087;chaperone binding;0.000840180792512228!GO:0016859;cis-trans isomerase activity;0.000869240712123306!GO:0004576;oligosaccharyl transferase activity;0.000891497856742337!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00102671189862057!GO:0009966;regulation of signal transduction;0.00103982560384803!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00104358417077404!GO:0005791;rough endoplasmic reticulum;0.00105642715621241!GO:0009967;positive regulation of signal transduction;0.00110109968618977!GO:0003729;mRNA binding;0.00110109968618977!GO:0004674;protein serine/threonine kinase activity;0.00116487482386139!GO:0030134;ER to Golgi transport vesicle;0.00120582140982629!GO:0000279;M phase;0.00128459896961922!GO:0051920;peroxiredoxin activity;0.00140686453391339!GO:0008234;cysteine-type peptidase activity;0.00151558480986042!GO:0051325;interphase;0.00157757139475171!GO:0007266;Rho protein signal transduction;0.00161350997288468!GO:0003779;actin binding;0.0016214058712703!GO:0030127;COPII vesicle coat;0.00182527853163127!GO:0012507;ER to Golgi transport vesicle membrane;0.00182527853163127!GO:0031072;heat shock protein binding;0.00182527853163127!GO:0016481;negative regulation of transcription;0.00184902548002084!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00185059570503989!GO:0007050;cell cycle arrest;0.00188893073669949!GO:0008361;regulation of cell size;0.00199493051139921!GO:0043492;ATPase activity, coupled to movement of substances;0.00201159132255902!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00206522326311278!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00207647681342275!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00210720646980944!GO:0018196;peptidyl-asparagine modification;0.00210774384000434!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00210774384000434!GO:0005099;Ras GTPase activator activity;0.0021195509365744!GO:0000059;protein import into nucleus, docking;0.00225062365630439!GO:0006402;mRNA catabolic process;0.00225849764731831!GO:0030041;actin filament polymerization;0.00229546556251398!GO:0033673;negative regulation of kinase activity;0.00229546556251398!GO:0006469;negative regulation of protein kinase activity;0.00229546556251398!GO:0048500;signal recognition particle;0.00244533097549488!GO:0008139;nuclear localization sequence binding;0.00252525768414791!GO:0031901;early endosome membrane;0.00259486068744618!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00263546587798646!GO:0015980;energy derivation by oxidation of organic compounds;0.00273767286484857!GO:0030663;COPI coated vesicle membrane;0.00282411930448829!GO:0030126;COPI vesicle coat;0.00282411930448829!GO:0009165;nucleotide biosynthetic process;0.00282786330997843!GO:0001944;vasculature development;0.00282914657199559!GO:0016049;cell growth;0.00295788409550518!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00304912660857445!GO:0030659;cytoplasmic vesicle membrane;0.0030513426761884!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0033805932010509!GO:0050790;regulation of catalytic activity;0.00342406317481205!GO:0003690;double-stranded DNA binding;0.00345029943601308!GO:0030521;androgen receptor signaling pathway;0.00345332111270868!GO:0030658;transport vesicle membrane;0.00353900656873982!GO:0051348;negative regulation of transferase activity;0.00365931470720283!GO:0008632;apoptotic program;0.00383687051315077!GO:0008154;actin polymerization and/or depolymerization;0.00393113097921885!GO:0030833;regulation of actin filament polymerization;0.003949119351084!GO:0001558;regulation of cell growth;0.00400493172286354!GO:0003682;chromatin binding;0.00462105704303038!GO:0051128;regulation of cellular component organization and biogenesis;0.00467858742552846!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00475439170273629!GO:0045047;protein targeting to ER;0.00475439170273629!GO:0051252;regulation of RNA metabolic process;0.00510208520664689!GO:0031625;ubiquitin protein ligase binding;0.0051435965055425!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00528210021130781!GO:0005774;vacuolar membrane;0.00529024675374314!GO:0017166;vinculin binding;0.00531848521415219!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00545304371482366!GO:0006302;double-strand break repair;0.00553486703463074!GO:0048487;beta-tubulin binding;0.00568453889773431!GO:0030137;COPI-coated vesicle;0.00568842189842089!GO:0006892;post-Golgi vesicle-mediated transport;0.00585314422017715!GO:0001568;blood vessel development;0.00588854728395127!GO:0005819;spindle;0.00590440210000147!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00590440210000147!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00590440210000147!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00590440210000147!GO:0006383;transcription from RNA polymerase III promoter;0.00590440210000147!GO:0044433;cytoplasmic vesicle part;0.00604615995070226!GO:0016301;kinase activity;0.00607084399912205!GO:0005762;mitochondrial large ribosomal subunit;0.00611821881126023!GO:0000315;organellar large ribosomal subunit;0.00611821881126023!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00619535092380125!GO:0006414;translational elongation;0.00619884734735164!GO:0006509;membrane protein ectodomain proteolysis;0.00636471183079035!GO:0033619;membrane protein proteolysis;0.00636471183079035!GO:0032940;secretion by cell;0.00637186624660598!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00640123762701691!GO:0007034;vacuolar transport;0.00642833034305098!GO:0015992;proton transport;0.00644581652787188!GO:0035258;steroid hormone receptor binding;0.0065002768496068!GO:0030118;clathrin coat;0.00671569869564944!GO:0006650;glycerophospholipid metabolic process;0.00697650138562217!GO:0046489;phosphoinositide biosynthetic process;0.00699097483041329!GO:0006310;DNA recombination;0.00704741587943739!GO:0031902;late endosome membrane;0.00708998868239915!GO:0001952;regulation of cell-matrix adhesion;0.00711005668765738!GO:0006818;hydrogen transport;0.00711427888193173!GO:0030660;Golgi-associated vesicle membrane;0.00723504309826008!GO:0012506;vesicle membrane;0.00729040919645193!GO:0005637;nuclear inner membrane;0.00764851492276445!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0079631633676247!GO:0003684;damaged DNA binding;0.00814983251830781!GO:0008312;7S RNA binding;0.00867779376712044!GO:0006289;nucleotide-excision repair;0.00867779376712044!GO:0006261;DNA-dependent DNA replication;0.00905311738593759!GO:0007162;negative regulation of cell adhesion;0.0097726844579378!GO:0000209;protein polyubiquitination;0.00988349481054685!GO:0030384;phosphoinositide metabolic process;0.0100984021951645!GO:0003678;DNA helicase activity;0.0101004187274967!GO:0046474;glycerophospholipid biosynthetic process;0.0101972092773005!GO:0003899;DNA-directed RNA polymerase activity;0.0102445789484494!GO:0006352;transcription initiation;0.0102576121060447!GO:0032774;RNA biosynthetic process;0.0104399646353338!GO:0006351;transcription, DNA-dependent;0.0105927664659669!GO:0015631;tubulin binding;0.0108110072543488!GO:0044262;cellular carbohydrate metabolic process;0.0108265363858439!GO:0006401;RNA catabolic process;0.0113110231424171!GO:0006643;membrane lipid metabolic process;0.0114297221574512!GO:0000082;G1/S transition of mitotic cell cycle;0.0114696397434085!GO:0048518;positive regulation of biological process;0.0115637390818813!GO:0051270;regulation of cell motility;0.011671002802586!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0117003382024634!GO:0043681;protein import into mitochondrion;0.0117962981820481!GO:0030032;lamellipodium biogenesis;0.0118552873409286!GO:0007040;lysosome organization and biogenesis;0.0118552873409286!GO:0005100;Rho GTPase activator activity;0.0122248176666698!GO:0044437;vacuolar part;0.0122866920103295!GO:0004177;aminopeptidase activity;0.012369501301552!GO:0006626;protein targeting to mitochondrion;0.0124841366589179!GO:0046467;membrane lipid biosynthetic process;0.0125793640357227!GO:0030518;steroid hormone receptor signaling pathway;0.013028279033102!GO:0007033;vacuole organization and biogenesis;0.0130304306795157!GO:0045449;regulation of transcription;0.0132305919155024!GO:0022406;membrane docking;0.0133638991207306!GO:0048278;vesicle docking;0.0133638991207306!GO:0043488;regulation of mRNA stability;0.0134480183786161!GO:0043487;regulation of RNA stability;0.0134480183786161!GO:0030880;RNA polymerase complex;0.0141690636130196!GO:0005938;cell cortex;0.0146070277834148!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.01463584120014!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.01481719532912!GO:0033043;regulation of organelle organization and biogenesis;0.01481719532912!GO:0016126;sterol biosynthetic process;0.0149341395338868!GO:0005869;dynactin complex;0.0150997936000476!GO:0005684;U2-dependent spliceosome;0.0151333324477587!GO:0050681;androgen receptor binding;0.0154529962625859!GO:0016251;general RNA polymerase II transcription factor activity;0.0154867722379102!GO:0007006;mitochondrial membrane organization and biogenesis;0.0158237572001245!GO:0022408;negative regulation of cell-cell adhesion;0.0159436285512244!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0161354794582853!GO:0040011;locomotion;0.0162179590643991!GO:0043086;negative regulation of catalytic activity;0.0165758039941604!GO:0003711;transcription elongation regulator activity;0.0165758039941604!GO:0005765;lysosomal membrane;0.0171155114721197!GO:0045893;positive regulation of transcription, DNA-dependent;0.0171679818139406!GO:0003756;protein disulfide isomerase activity;0.0172682726958721!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0172682726958721!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0172752913273572!GO:0048514;blood vessel morphogenesis;0.0172988820181041!GO:0007041;lysosomal transport;0.0173307146543525!GO:0000314;organellar small ribosomal subunit;0.0176557297483589!GO:0005763;mitochondrial small ribosomal subunit;0.0176557297483589!GO:0048468;cell development;0.0176858239504019!GO:0022415;viral reproductive process;0.0177918688873042!GO:0030119;AP-type membrane coat adaptor complex;0.0178025970134417!GO:0031418;L-ascorbic acid binding;0.017859328985415!GO:0050811;GABA receptor binding;0.0183019248506966!GO:0033093;Weibel-Palade body;0.0183019248506966!GO:0035035;histone acetyltransferase binding;0.0183621049384737!GO:0000118;histone deacetylase complex;0.0186529071654354!GO:0006611;protein export from nucleus;0.0187890960679418!GO:0040012;regulation of locomotion;0.0193739051257137!GO:0005832;chaperonin-containing T-complex;0.0195164641520509!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0196603220768304!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0205175559881083!GO:0006839;mitochondrial transport;0.0205488466130612!GO:0006338;chromatin remodeling;0.0206569012516132!GO:0047485;protein N-terminus binding;0.0212356932880673!GO:0016601;Rac protein signal transduction;0.0213184844257863!GO:0000339;RNA cap binding;0.0214727420202885!GO:0006497;protein amino acid lipidation;0.0216788672148021!GO:0006904;vesicle docking during exocytosis;0.0219122820033771!GO:0006405;RNA export from nucleus;0.0219122820033771!GO:0005874;microtubule;0.022328267161103!GO:0051336;regulation of hydrolase activity;0.0223608812967964!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0226361964305233!GO:0000428;DNA-directed RNA polymerase complex;0.0226361964305233!GO:0000075;cell cycle checkpoint;0.0226834487231261!GO:0004197;cysteine-type endopeptidase activity;0.0227071879106936!GO:0043022;ribosome binding;0.0228473400883895!GO:0032200;telomere organization and biogenesis;0.0228726308907998!GO:0000723;telomere maintenance;0.0228726308907998!GO:0000287;magnesium ion binding;0.0233075830076418!GO:0007030;Golgi organization and biogenesis;0.0233075830076418!GO:0006516;glycoprotein catabolic process;0.0241998849416292!GO:0043087;regulation of GTPase activity;0.0242168019835107!GO:0016491;oxidoreductase activity;0.0242168019835107!GO:0001525;angiogenesis;0.0242320379499162!GO:0006376;mRNA splice site selection;0.0244388236075278!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0244388236075278!GO:0030132;clathrin coat of coated pit;0.025048655130199!GO:0001953;negative regulation of cell-matrix adhesion;0.0250532089667453!GO:0000776;kinetochore;0.0250906382716468!GO:0022890;inorganic cation transmembrane transporter activity;0.0251213618231829!GO:0006695;cholesterol biosynthetic process;0.0258873659486405!GO:0001666;response to hypoxia;0.0259444733101603!GO:0000049;tRNA binding;0.0260535911372814!GO:0045892;negative regulation of transcription, DNA-dependent;0.0265176094285432!GO:0006468;protein amino acid phosphorylation;0.0265584486322458!GO:0006417;regulation of translation;0.0268718817851257!GO:0030131;clathrin adaptor complex;0.0268718817851257!GO:0031543;peptidyl-proline dioxygenase activity;0.0278354582663716!GO:0045941;positive regulation of transcription;0.0278354582663716!GO:0005669;transcription factor TFIID complex;0.0282446942682545!GO:0051098;regulation of binding;0.0283076001735865!GO:0006644;phospholipid metabolic process;0.0286321561695096!GO:0051059;NF-kappaB binding;0.0287048560270372!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0287048560270372!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0287048560270372!GO:0008022;protein C-terminus binding;0.0288217417272543!GO:0008094;DNA-dependent ATPase activity;0.0295026223699267!GO:0033130;acetylcholine receptor binding;0.029616094889995!GO:0043065;positive regulation of apoptosis;0.0299530286107968!GO:0031497;chromatin assembly;0.0313855479811945!GO:0051101;regulation of DNA binding;0.031477446895621!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0316761784735814!GO:0006740;NADPH regeneration;0.0317840600098816!GO:0006098;pentose-phosphate shunt;0.0317840600098816!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0317840600098816!GO:0006334;nucleosome assembly;0.0320034394935922!GO:0006595;polyamine metabolic process;0.0323919847786074!GO:0006672;ceramide metabolic process;0.0326292982187813!GO:0008286;insulin receptor signaling pathway;0.0327129211314116!GO:0015036;disulfide oxidoreductase activity;0.0327208930951057!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0329383985895579!GO:0008320;protein transmembrane transporter activity;0.0332436238486884!GO:0042585;germinal vesicle;0.0335753580858748!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0336486643489327!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0336486643489327!GO:0043433;negative regulation of transcription factor activity;0.0338964687575933!GO:0022407;regulation of cell-cell adhesion;0.0342339114533096!GO:0040008;regulation of growth;0.0345373875707354!GO:0008180;signalosome;0.0356052146993929!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0356306514615097!GO:0032906;transforming growth factor-beta2 production;0.0358877507208424!GO:0032909;regulation of transforming growth factor-beta2 production;0.0358877507208424!GO:0043068;positive regulation of programmed cell death;0.0361552614808698!GO:0032535;regulation of cellular component size;0.036525408814013!GO:0019783;small conjugating protein-specific protease activity;0.0366817046813871!GO:0019904;protein domain specific binding;0.0375170774993555!GO:0007004;telomere maintenance via telomerase;0.0376142243650883!GO:0016272;prefoldin complex;0.0385776147871122!GO:0030155;regulation of cell adhesion;0.0391354284792329!GO:0004843;ubiquitin-specific protease activity;0.0391354284792329!GO:0006091;generation of precursor metabolites and energy;0.0395446636753287!GO:0007569;cell aging;0.0400515797754826!GO:0005784;translocon complex;0.0408284725284496!GO:0004563;beta-N-acetylhexosaminidase activity;0.0412225672935841!GO:0007021;tubulin folding;0.0412225672935841!GO:0032984;macromolecular complex disassembly;0.0413302254231386!GO:0006607;NLS-bearing substrate import into nucleus;0.0420257587407707!GO:0019902;phosphatase binding;0.0421002650732849!GO:0030100;regulation of endocytosis;0.0421029479929732!GO:0000781;chromosome, telomeric region;0.042564766636461!GO:0007052;mitotic spindle organization and biogenesis;0.042669777135741!GO:0033559;unsaturated fatty acid metabolic process;0.0445248336687749!GO:0006636;unsaturated fatty acid biosynthetic process;0.0445248336687749!GO:0046519;sphingoid metabolic process;0.0449611034978846!GO:0048660;regulation of smooth muscle cell proliferation;0.0449992250173957!GO:0008270;zinc ion binding;0.0452496393145203!GO:0042158;lipoprotein biosynthetic process;0.0465317290976422!GO:0003702;RNA polymerase II transcription factor activity;0.0465317290976422!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0465555190655278!GO:0006984;ER-nuclear signaling pathway;0.0465588116819349!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0468636604010387!GO:0006919;caspase activation;0.0468973849826221!GO:0030832;regulation of actin filament length;0.0474417254929145!GO:0044452;nucleolar part;0.0486719998596681!GO:0030176;integral to endoplasmic reticulum membrane;0.0489107745232496!GO:0030984;kininogen binding;0.048957203836448!GO:0004213;cathepsin B activity;0.048957203836448!GO:0030522;intracellular receptor-mediated signaling pathway;0.048957203836448!GO:0043407;negative regulation of MAP kinase activity;0.0490517483949579!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0491023783048058!GO:0051052;regulation of DNA metabolic process;0.0492197405728783!GO:0030031;cell projection biogenesis;0.0493939023780714!GO:0007051;spindle organization and biogenesis;0.0498421457606092!GO:0051338;regulation of transferase activity;0.0499246787968192 | |||
|sample_id=11393 | |||
|sample_note= | |||
|sample_sex=unknown | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=capillary | |||
|top_motifs=FOX{I1,J2}:2.28751906807;PAX6:1.92786867702;SOX5:1.84327032791;SOX{8,9,10}:1.8267403761;SOX2:1.75981887595;HBP1_HMGB_SSRP1_UBTF:1.72016221974;RXR{A,B,G}:1.69528390452;NFATC1..3:1.5299089024;IKZF2:1.23465843157;ELF1,2,4:1.18878216371;LEF1_TCF7_TCF7L1,2:1.11969382711;SREBF1,2:1.06752675013;SPZ1:1.04175074943;ADNP_IRX_SIX_ZHX:0.994167321958;ZFP161:0.95525459101;STAT1,3:0.907753442499;RBPJ:0.870535309154;PAX4:0.86512429418;AR:0.86509395345;ETS1,2:0.835039327354;GATA6:0.833861483327;FOXN1:0.805543031387;TLX1..3_NFIC{dimer}:0.771715135737;HAND1,2:0.76427531676;ALX1:0.745710105586;SOX17:0.734699982125;IKZF1:0.725512042663;bHLH_family:0.699830175749;LHX3,4:0.679010789612;FOX{D1,D2}:0.678107917209;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.654671339366;TP53:0.646090001881;ARID5B:0.645349404895;SPIB:0.640989741314;TEF:0.625948191101;MED-1{core}:0.622405547845;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.614474644672;HMGA1,2:0.602337918993;NANOG:0.563170195648;BPTF:0.559026733182;PAX3,7:0.542017988503;TFAP2{A,C}:0.535261410236;TEAD1:0.51557801799;HIF1A:0.507036942464;PRDM1:0.505609306189;FOXA2:0.502563718131;POU3F1..4:0.479826180991;CDC5L:0.460496011961;PAX1,9:0.452435196618;TFAP4:0.450617995905;TFDP1:0.442971831758;GFI1B:0.43396454095;MTE{core}:0.422591011592;MYOD1:0.422467081898;EGR1..3:0.411214056781;MAZ:0.410281129782;PITX1..3:0.381413426905;NRF1:0.379794383707;SMAD1..7,9:0.369745258509;FOXQ1:0.362654929209;POU1F1:0.351981992175;STAT2,4,6:0.351261086086;GZF1:0.348826125637;SP1:0.323995115232;PAX5:0.295959508974;XCPE1{core}:0.275914198059;FOXO1,3,4:0.244375575029;TFAP2B:0.242272530326;ATF2:0.237699639397;TAL1_TCF{3,4,12}:0.230127701963;NR3C1:0.219220891736;ZNF143:0.213410411994;CUX2:0.189908668043;TGIF1:0.181072220529;GATA4:0.165568128895;MYB:0.139866288253;YY1:0.128679367945;NFY{A,B,C}:0.122167479499;T:0.121759431583;PBX1:0.118411139281;FOXD3:0.111024999079;PAX2:0.109944882392;PAX8:0.10203393874;NHLH1,2:0.101864313775;GCM1,2:0.0921091180738;SPI1:0.0894161956704;TLX2:0.0654066009396;HOXA9_MEIS1:0.0642832430038;ZBTB6:0.0618654230651;NFKB1_REL_RELA:0.0321079859193;HIC1:0.0235800792316;IRF1,2:0.0214171313383;EVI1:0.0203851579434;E2F1..5:0.00941154562971;EN1,2:0.00901546881738;SRF:-0.000206495698527;MZF1:-0.0133231050928;NFE2L2:-0.0184326942371;ZNF238:-0.0197584658572;NFE2:-0.022582813922;NKX2-3_NKX2-5:-0.0247607969831;FOSL2:-0.0426056428274;XBP1:-0.0433253072246;BACH2:-0.0567380896156;RORA:-0.0579111328258;MEF2{A,B,C,D}:-0.0614874931605;GTF2I:-0.0722469701928;MYFfamily:-0.0810341246924;FOS_FOS{B,L1}_JUN{B,D}:-0.130813566022;FOX{F1,F2,J1}:-0.14085494561;GFI1:-0.148638289801;PDX1:-0.151252560646;ATF6:-0.156580743492;DMAP1_NCOR{1,2}_SMARC:-0.159555381593;PATZ1:-0.164160324413;HNF1A:-0.166181869893;CREB1:-0.170396543425;LMO2:-0.176195241506;NFIX:-0.182138220421;REST:-0.187470334068;AHR_ARNT_ARNT2:-0.18982047013;ZIC1..3:-0.201038280626;ZBTB16:-0.204289555159;CRX:-0.207854293035;NKX2-2,8:-0.236989104676;HNF4A_NR2F1,2:-0.249077530268;UFEwm:-0.266282557848;NKX3-2:-0.280490350562;IRF7:-0.280629019844;ATF4:-0.287401004003;FOXP1:-0.306311807565;ZNF148:-0.31529124443;HLF:-0.31945635154;NANOG{mouse}:-0.324609896988;NR5A1,2:-0.331270476824;POU6F1:-0.343360555189;FOXL1:-0.362820926196;NKX2-1,4:-0.364336474353;ONECUT1,2:-0.369579510271;FOXM1:-0.382361207068;EP300:-0.384594288797;PRRX1,2:-0.406929183339;RFX1:-0.42505487194;JUN:-0.432208922641;ESRRA:-0.441714424303;HSF1,2:-0.443366771091;TBP:-0.449443834705;ELK1,4_GABP{A,B1}:-0.465162968768;OCT4_SOX2{dimer}:-0.473768547094;CEBPA,B_DDIT3:-0.483274249842;HMX1:-0.487300028321;MYBL2:-0.49210776048;RFX2..5_RFXANK_RFXAP:-0.525551437044;GTF2A1,2:-0.532543457598;FOXP3:-0.548059901072;HOX{A5,B5}:-0.591998573675;ZNF384:-0.594929941248;KLF4:-0.608995587796;CDX1,2,4:-0.615223422183;ATF5_CREB3:-0.626421704572;EBF1:-0.630246296261;STAT5{A,B}:-0.638453783136;ALX4:-0.639379458027;BREu{core}:-0.643345642319;MAFB:-0.645709040844;PPARG:-0.661895178914;NR6A1:-0.668161962863;SNAI1..3:-0.679453160087;RREB1:-0.680074346015;HES1:-0.705243367401;NKX3-1:-0.736739821264;RUNX1..3:-0.741112018779;TBX4,5:-0.743274617465;TOPORS:-0.754445048516;ZEB1:-0.768545323689;NFE2L1:-0.777939354499;HOX{A6,A7,B6,B7}:-0.788774832523;AIRE:-0.817479290224;GLI1..3:-0.86040006327;TFCP2:-0.882784228231;MTF1:-0.893848074979;RXRA_VDR{dimer}:-0.93068631635;POU5F1:-0.998640059902;NR1H4:-1.00440485273;DBP:-1.0129761465;NFIL3:-1.15226203899;HOX{A4,D4}:-1.20742182423;ZNF423:-1.23624793468;ESR1:-1.27856648204;NKX6-1,2:-1.30016752483;VSX1,2:-1.44496138797;POU2F1..3:-1.48385090819 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11393-118C7;search_select_hide=table117:FF:11393-118C7 | |||
}} | }} | ||
Latest revision as of 17:57, 4 June 2020
| Name: | Endothelial Cells - Lymphatic, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11906 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11906
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11906
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.232 |
| 10 | 10 | 0.0673 |
| 100 | 100 | 0.728 |
| 101 | 101 | 0.389 |
| 102 | 102 | 0.422 |
| 103 | 103 | 0.807 |
| 104 | 104 | 0.765 |
| 105 | 105 | 0.0873 |
| 106 | 106 | 0.11 |
| 107 | 107 | 0.412 |
| 108 | 108 | 0.61 |
| 109 | 109 | 0.0777 |
| 11 | 11 | 0.0894 |
| 110 | 110 | 0.88 |
| 111 | 111 | 0.677 |
| 112 | 112 | 0.288 |
| 113 | 113 | 0.856 |
| 114 | 114 | 0.491 |
| 115 | 115 | 0.118 |
| 116 | 116 | 0.00262 |
| 117 | 117 | 0.628 |
| 118 | 118 | 0.324 |
| 119 | 119 | 0.428 |
| 12 | 12 | 0.506 |
| 120 | 120 | 0.15 |
| 121 | 121 | 0.44 |
| 122 | 122 | 0.401 |
| 123 | 123 | 0.108 |
| 124 | 124 | 0.0265 |
| 125 | 125 | 0.503 |
| 126 | 126 | 0.571 |
| 127 | 127 | 0.0939 |
| 128 | 128 | 0.0974 |
| 129 | 129 | 0.875 |
| 13 | 13 | 0.585 |
| 130 | 130 | 0.863 |
| 131 | 131 | 0.303 |
| 132 | 132 | 0.675 |
| 133 | 133 | 0.999 |
| 134 | 134 | 0.985 |
| 135 | 135 | 0.215 |
| 136 | 136 | 0.455 |
| 137 | 137 | 0.656 |
| 138 | 138 | 0.82 |
| 139 | 139 | 0.296 |
| 14 | 14 | 0.514 |
| 140 | 140 | 0.0342 |
| 141 | 141 | 0.739 |
| 142 | 142 | 0.0176 |
| 143 | 143 | 0.324 |
| 144 | 144 | 0.0908 |
| 145 | 145 | 0.725 |
| 146 | 146 | 0.837 |
| 147 | 147 | 0.26 |
| 148 | 148 | 0.0108 |
| 149 | 149 | 0.324 |
| 15 | 15 | 0.214 |
| 150 | 150 | 0.893 |
| 151 | 151 | 0.401 |
| 152 | 152 | 0.458 |
| 153 | 153 | 0.387 |
| 154 | 154 | 0.588 |
| 155 | 155 | 0.22 |
| 156 | 156 | 0.058 |
| 157 | 157 | 0.376 |
| 158 | 158 | 0.978 |
| 159 | 159 | 0.786 |
| 16 | 16 | 0.0793 |
| 160 | 160 | 0.298 |
| 161 | 161 | 0.0134 |
| 162 | 162 | 0.438 |
| 163 | 163 | 0.358 |
| 164 | 164 | 0.494 |
| 165 | 165 | 0.845 |
| 166 | 166 | 0.356 |
| 167 | 167 | 0.104 |
| 168 | 168 | 0.753 |
| 169 | 169 | 0.286 |
| 17 | 17 | 0.451 |
| 18 | 18 | 0.0173 |
| 19 | 19 | 0.565 |
| 2 | 2 | 0.453 |
| 20 | 20 | 0.471 |
| 21 | 21 | 0.357 |
| 22 | 22 | 0.296 |
| 23 | 23 | 0.924 |
| 24 | 24 | 0.765 |
| 25 | 25 | 0.217 |
| 26 | 26 | 0.00897 |
| 27 | 27 | 0.368 |
| 28 | 28 | 0.905 |
| 29 | 29 | 0.392 |
| 3 | 3 | 0.207 |
| 30 | 30 | 0.632 |
| 31 | 31 | 0.48 |
| 32 | 32 | 0.0226 |
| 33 | 33 | 0.913 |
| 34 | 34 | 0.877 |
| 35 | 35 | 0.381 |
| 36 | 36 | 0.144 |
| 37 | 37 | 0.46 |
| 38 | 38 | 0.994 |
| 39 | 39 | 0.256 |
| 4 | 4 | 0.211 |
| 40 | 40 | 0.629 |
| 41 | 41 | 0.236 |
| 42 | 42 | 0.488 |
| 43 | 43 | 0.0865 |
| 44 | 44 | 0.0211 |
| 45 | 45 | 0.966 |
| 46 | 46 | 0.0648 |
| 47 | 47 | 0.062 |
| 48 | 48 | 0.259 |
| 49 | 49 | 0.11 |
| 5 | 5 | 0.653 |
| 50 | 50 | 0.658 |
| 51 | 51 | 0.365 |
| 52 | 52 | 0.251 |
| 53 | 53 | 0.59 |
| 54 | 54 | 0.335 |
| 55 | 55 | 0.819 |
| 56 | 56 | 0.232 |
| 57 | 57 | 0.571 |
| 58 | 58 | 0.0891 |
| 59 | 59 | 0.0864 |
| 6 | 6 | 0.108 |
| 60 | 60 | 0.0711 |
| 61 | 61 | 0.328 |
| 62 | 62 | 0.0325 |
| 63 | 63 | 0.229 |
| 64 | 64 | 0.0277 |
| 65 | 65 | 0.292 |
| 66 | 66 | 0.579 |
| 67 | 67 | 0.336 |
| 68 | 68 | 0.956 |
| 69 | 69 | 0.294 |
| 7 | 7 | 0.213 |
| 70 | 70 | 0.00288 |
| 71 | 71 | 0.091 |
| 72 | 72 | 0.895 |
| 73 | 73 | 0.622 |
| 74 | 74 | 0.539 |
| 75 | 75 | 0.552 |
| 76 | 76 | 0.864 |
| 77 | 77 | 0.0239 |
| 78 | 78 | 0.383 |
| 79 | 79 | 0.632 |
| 8 | 8 | 0.0861 |
| 80 | 80 | 0.717 |
| 81 | 81 | 0.184 |
| 82 | 82 | 0.327 |
| 83 | 83 | 0.851 |
| 84 | 84 | 0.206 |
| 85 | 85 | 0.118 |
| 86 | 86 | 0.887 |
| 87 | 87 | 0.328 |
| 88 | 88 | 0.228 |
| 89 | 89 | 0.237 |
| 9 | 9 | 0.431 |
| 90 | 90 | 0.339 |
| 91 | 91 | 0.596 |
| 92 | 92 | 0.541 |
| 93 | 93 | 0.845 |
| 94 | 94 | 0.125 |
| 95 | 95 | 0.474 |
| 96 | 96 | 0.413 |
| 97 | 97 | 0.392 |
| 98 | 98 | 0.0577 |
| 99 | 99 | 0.768 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11906
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000049 human lymphatic endothelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0002138 (endothelial cell of lymphatic vessel)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000055 (vessel)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002049 (vasculature)
0007798 (vascular system)
0001473 (lymphatic vessel)
0002465 (lymphoid system)
0004535 (cardiovascular system)
0004536 (lymph vasculature)
0006558 (lymphatic part of lymphoid system)
0002193 (hemolymphoid system)
0002405 (immune system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000049 (human lymphatic endothelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
CL:0005022 (vascular lymphangioblast)
