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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004721
|DRA_sample_Accession=CAGE@SAMD00004721
|accession_numbers=CAGE;DRX008380;DRR009252;DRZ000677;DRZ002062
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004721
|accession_numbers=CAGE;DRX008380;DRR009252;DRZ000677;DRZ002062;DRZ012027;DRZ013412
|accession_numbers_RNASeq=sRNA-Seq;DRX037208;DRR041574;DRZ007216
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000738,CL:0000255,CL:0000094,CL:0000775
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000738,CL:0000255,CL:0000094,CL:0000775
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor3.CNhs11905.11390-118C4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor3.CNhs11905.11390-118C4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor3.CNhs11905.11390-118C4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor3.CNhs11905.11390-118C4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neutrophils%252c%2520donor3.CNhs11905.11390-118C4.hg38.nobarcode.ctss.bed.gz
|id=FF:11390-118C4
|id=FF:11390-118C4
|is_a=EFO:0002091;;FF:0000122
|is_a=EFO:0002091;;FF:0000122
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|library_id=CNhs11905
|library_id=CNhs11905
|library_id_phase_based=2:CNhs11905
|library_id_phase_based=2:CNhs11905
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11390
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.CAGATC.11390
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11390
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.CAGATC.11390
|name=Neutrophils, donor3
|name=Neutrophils, donor3
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 68: Line 82:
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|sample_category=primary cells
Line 91: Line 106:
|top_motifs=CEBPA,B_DDIT3:4.9254166473;SPI1:4.47486288424;SPIB:4.18813953911;ATF5_CREB3:4.05986501042;FOXN1:4.0595936718;ETS1,2:3.88261409345;HLF:3.50546426832;DMAP1_NCOR{1,2}_SMARC:3.49247411077;FOXO1,3,4:3.29463029217;FOXP3:3.09080893697;RUNX1..3:3.06916780878;NANOG{mouse}:2.89123414726;NFKB1_REL_RELA:2.81516164614;FOX{F1,F2,J1}:2.80493864254;PAX2:2.7505191949;NFE2L2:2.73951919358;ELF1,2,4:2.72044220866;FOX{D1,D2}:2.69157761422;NFIL3:2.63206972915;CREB1:2.43425212066;MAFB:2.4153730157;FOXA2:2.38196355512;HBP1_HMGB_SSRP1_UBTF:2.35842142838;RXRA_VDR{dimer}:2.35005041206;ATF4:2.31762294382;STAT2,4,6:2.30479506863;NR1H4:2.2090603068;BPTF:2.17988583805;IRF7:2.17039248564;SREBF1,2:2.08981489765;EP300:2.08030928799;ALX4:1.87352553722;IRF1,2:1.85489076237;TGIF1:1.79651878232;HIF1A:1.74427747994;RFX2..5_RFXANK_RFXAP:1.74286255668;PAX3,7:1.72812218401;ATF6:1.7010178404;JUN:1.64052217592;SPZ1:1.57749653994;NFE2L1:1.5725821414;PPARG:1.40800433814;NFE2:1.39238019992;T:1.38789356871;FOSL2:1.38192032017;HMGA1,2:1.36486893815;POU5F1:1.32440780546;TFCP2:1.24845902652;GATA4:1.1111279959;ALX1:1.00125183157;NFATC1..3:0.98431860281;STAT1,3:0.973955119969;ATF2:0.945342343547;BACH2:0.907793720879;PAX8:0.882825715964;MYB:0.874789552279;MYFfamily:0.818665959611;NKX2-1,4:0.802375764217;ESRRA:0.792153706415;HMX1:0.773538886683;MZF1:0.755015260251;SRF:0.717169833434;ZNF423:0.669911318406;HOXA9_MEIS1:0.650082250416;MAZ:0.642346493698;NFIX:0.637573560171;FOS_FOS{B,L1}_JUN{B,D}:0.613521398224;RBPJ:0.608998793824;CDX1,2,4:0.588345781348;TLX2:0.576410973503;NKX3-2:0.471055070124;SMAD1..7,9:0.415663908492;SP1:0.329971440216;RORA:0.319404074239;PATZ1:0.300568997279;FOXD3:0.300405717176;RXR{A,B,G}:0.27528047373;TAL1_TCF{3,4,12}:0.274659956884;FOX{I1,J2}:0.255331935889;NR3C1:0.252002425281;RREB1:0.197746170577;GATA6:0.197683706846;NR5A1,2:0.194864549951;XBP1:0.172833317985;FOXQ1:0.134485367569;EGR1..3:0.105298135181;ZNF148:0.0515928930948;TFAP2{A,C}:0.044147303237;TFAP4:-0.0246091100851;IKZF1:-0.0593482338832;EVI1:-0.096829368077;CUX2:-0.107383669953;EN1,2:-0.126927353623;EBF1:-0.132558245426;NKX3-1:-0.200923618914;IKZF2:-0.207794221198;MYOD1:-0.242268719789;NR6A1:-0.305712365786;REST:-0.333572320815;POU2F1..3:-0.355513143957;PRDM1:-0.468146041803;ZBTB16:-0.498214409765;ZIC1..3:-0.511394673878;SOX2:-0.51322821555;ZEB1:-0.518239910484;MTE{core}:-0.547429137042;BREu{core}:-0.61860022914;HNF4A_NR2F1,2:-0.61992982367;HNF1A:-0.648988450394;MED-1{core}:-0.651480542434;SNAI1..3:-0.669510097892;TBX4,5:-0.71385269871;RFX1:-0.760206988447;ESR1:-0.775578729805;CRX:-0.777879402545;TFAP2B:-0.845165971769;AIRE:-0.8689641012;STAT5{A,B}:-0.892614842315;PAX1,9:-0.897603420362;KLF4:-0.899899443683;ZNF238:-0.904968743886;GTF2I:-0.922970435475;HIC1:-0.971913065302;PITX1..3:-1.02968963213;NHLH1,2:-1.05622620242;ZFP161:-1.0658094574;TFDP1:-1.15103003941;GLI1..3:-1.15907979614;PRRX1,2:-1.19536076657;DBP:-1.22108920262;ELK1,4_GABP{A,B1}:-1.2507501483;TOPORS:-1.29756287843;LEF1_TCF7_TCF7L1,2:-1.30640770454;HOX{A5,B5}:-1.30944023594;NKX2-2,8:-1.39264260354;FOXP1:-1.41296830115;LMO2:-1.50992097317;POU6F1:-1.52351256917;PDX1:-1.52611782349;VSX1,2:-1.53870536048;OCT4_SOX2{dimer}:-1.57291601547;MEF2{A,B,C,D}:-1.58048953356;SOX{8,9,10}:-1.60178298454;AR:-1.66872191817;MTF1:-1.6818375832;TEAD1:-1.77753458156;ZBTB6:-1.79187707577;E2F1..5:-1.7949940444;AHR_ARNT_ARNT2:-1.84827123792;FOXL1:-1.86627194827;NFY{A,B,C}:-1.88351266387;ADNP_IRX_SIX_ZHX:-1.90597931551;XCPE1{core}:-1.93230432806;TLX1..3_NFIC{dimer}:-1.96001714965;UFEwm:-2.05691802647;NKX2-3_NKX2-5:-2.07018194508;PAX5:-2.07320316419;NKX6-1,2:-2.08400844878;NANOG:-2.10576084062;HSF1,2:-2.11363786997;TBP:-2.11887058667;RXR{A,B,G}_{NR1H2,PPAR}dimers:-2.1407698111;FOXM1:-2.16457661001;PBX1:-2.19008690397;GZF1:-2.19724819505;POU3F1..4:-2.20636757349;SOX5:-2.24280451223;ONECUT1,2:-2.35103305126;SOX17:-2.40400720605;TP53:-2.4578615578;GTF2A1,2:-2.60655169547;NRF1:-2.64843778526;HOX{A4,D4}:-2.65787497034;HAND1,2:-2.70390050649;HES1:-2.704454002;LHX3,4:-2.75534464812;GFI1:-2.82957397511;MYBL2:-2.86548533092;GCM1,2:-2.8872013461;GFI1B:-2.8980554584;PAX4:-2.91525653271;ZNF384:-3.00263220862;TEF:-3.02636167783;POU1F1:-3.08843086069;CDC5L:-3.1738850989;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-3.19997661158;PAX6:-3.39623389427;ZNF143:-3.4311514719;ARID5B:-3.52417937069;YY1:-3.83482201579;bHLH_family:-4.33654466487;HOX{A6,A7,B6,B7}:-4.47849795622
|top_motifs=CEBPA,B_DDIT3:4.9254166473;SPI1:4.47486288424;SPIB:4.18813953911;ATF5_CREB3:4.05986501042;FOXN1:4.0595936718;ETS1,2:3.88261409345;HLF:3.50546426832;DMAP1_NCOR{1,2}_SMARC:3.49247411077;FOXO1,3,4:3.29463029217;FOXP3:3.09080893697;RUNX1..3:3.06916780878;NANOG{mouse}:2.89123414726;NFKB1_REL_RELA:2.81516164614;FOX{F1,F2,J1}:2.80493864254;PAX2:2.7505191949;NFE2L2:2.73951919358;ELF1,2,4:2.72044220866;FOX{D1,D2}:2.69157761422;NFIL3:2.63206972915;CREB1:2.43425212066;MAFB:2.4153730157;FOXA2:2.38196355512;HBP1_HMGB_SSRP1_UBTF:2.35842142838;RXRA_VDR{dimer}:2.35005041206;ATF4:2.31762294382;STAT2,4,6:2.30479506863;NR1H4:2.2090603068;BPTF:2.17988583805;IRF7:2.17039248564;SREBF1,2:2.08981489765;EP300:2.08030928799;ALX4:1.87352553722;IRF1,2:1.85489076237;TGIF1:1.79651878232;HIF1A:1.74427747994;RFX2..5_RFXANK_RFXAP:1.74286255668;PAX3,7:1.72812218401;ATF6:1.7010178404;JUN:1.64052217592;SPZ1:1.57749653994;NFE2L1:1.5725821414;PPARG:1.40800433814;NFE2:1.39238019992;T:1.38789356871;FOSL2:1.38192032017;HMGA1,2:1.36486893815;POU5F1:1.32440780546;TFCP2:1.24845902652;GATA4:1.1111279959;ALX1:1.00125183157;NFATC1..3:0.98431860281;STAT1,3:0.973955119969;ATF2:0.945342343547;BACH2:0.907793720879;PAX8:0.882825715964;MYB:0.874789552279;MYFfamily:0.818665959611;NKX2-1,4:0.802375764217;ESRRA:0.792153706415;HMX1:0.773538886683;MZF1:0.755015260251;SRF:0.717169833434;ZNF423:0.669911318406;HOXA9_MEIS1:0.650082250416;MAZ:0.642346493698;NFIX:0.637573560171;FOS_FOS{B,L1}_JUN{B,D}:0.613521398224;RBPJ:0.608998793824;CDX1,2,4:0.588345781348;TLX2:0.576410973503;NKX3-2:0.471055070124;SMAD1..7,9:0.415663908492;SP1:0.329971440216;RORA:0.319404074239;PATZ1:0.300568997279;FOXD3:0.300405717176;RXR{A,B,G}:0.27528047373;TAL1_TCF{3,4,12}:0.274659956884;FOX{I1,J2}:0.255331935889;NR3C1:0.252002425281;RREB1:0.197746170577;GATA6:0.197683706846;NR5A1,2:0.194864549951;XBP1:0.172833317985;FOXQ1:0.134485367569;EGR1..3:0.105298135181;ZNF148:0.0515928930948;TFAP2{A,C}:0.044147303237;TFAP4:-0.0246091100851;IKZF1:-0.0593482338832;EVI1:-0.096829368077;CUX2:-0.107383669953;EN1,2:-0.126927353623;EBF1:-0.132558245426;NKX3-1:-0.200923618914;IKZF2:-0.207794221198;MYOD1:-0.242268719789;NR6A1:-0.305712365786;REST:-0.333572320815;POU2F1..3:-0.355513143957;PRDM1:-0.468146041803;ZBTB16:-0.498214409765;ZIC1..3:-0.511394673878;SOX2:-0.51322821555;ZEB1:-0.518239910484;MTE{core}:-0.547429137042;BREu{core}:-0.61860022914;HNF4A_NR2F1,2:-0.61992982367;HNF1A:-0.648988450394;MED-1{core}:-0.651480542434;SNAI1..3:-0.669510097892;TBX4,5:-0.71385269871;RFX1:-0.760206988447;ESR1:-0.775578729805;CRX:-0.777879402545;TFAP2B:-0.845165971769;AIRE:-0.8689641012;STAT5{A,B}:-0.892614842315;PAX1,9:-0.897603420362;KLF4:-0.899899443683;ZNF238:-0.904968743886;GTF2I:-0.922970435475;HIC1:-0.971913065302;PITX1..3:-1.02968963213;NHLH1,2:-1.05622620242;ZFP161:-1.0658094574;TFDP1:-1.15103003941;GLI1..3:-1.15907979614;PRRX1,2:-1.19536076657;DBP:-1.22108920262;ELK1,4_GABP{A,B1}:-1.2507501483;TOPORS:-1.29756287843;LEF1_TCF7_TCF7L1,2:-1.30640770454;HOX{A5,B5}:-1.30944023594;NKX2-2,8:-1.39264260354;FOXP1:-1.41296830115;LMO2:-1.50992097317;POU6F1:-1.52351256917;PDX1:-1.52611782349;VSX1,2:-1.53870536048;OCT4_SOX2{dimer}:-1.57291601547;MEF2{A,B,C,D}:-1.58048953356;SOX{8,9,10}:-1.60178298454;AR:-1.66872191817;MTF1:-1.6818375832;TEAD1:-1.77753458156;ZBTB6:-1.79187707577;E2F1..5:-1.7949940444;AHR_ARNT_ARNT2:-1.84827123792;FOXL1:-1.86627194827;NFY{A,B,C}:-1.88351266387;ADNP_IRX_SIX_ZHX:-1.90597931551;XCPE1{core}:-1.93230432806;TLX1..3_NFIC{dimer}:-1.96001714965;UFEwm:-2.05691802647;NKX2-3_NKX2-5:-2.07018194508;PAX5:-2.07320316419;NKX6-1,2:-2.08400844878;NANOG:-2.10576084062;HSF1,2:-2.11363786997;TBP:-2.11887058667;RXR{A,B,G}_{NR1H2,PPAR}dimers:-2.1407698111;FOXM1:-2.16457661001;PBX1:-2.19008690397;GZF1:-2.19724819505;POU3F1..4:-2.20636757349;SOX5:-2.24280451223;ONECUT1,2:-2.35103305126;SOX17:-2.40400720605;TP53:-2.4578615578;GTF2A1,2:-2.60655169547;NRF1:-2.64843778526;HOX{A4,D4}:-2.65787497034;HAND1,2:-2.70390050649;HES1:-2.704454002;LHX3,4:-2.75534464812;GFI1:-2.82957397511;MYBL2:-2.86548533092;GCM1,2:-2.8872013461;GFI1B:-2.8980554584;PAX4:-2.91525653271;ZNF384:-3.00263220862;TEF:-3.02636167783;POU1F1:-3.08843086069;CDC5L:-3.1738850989;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-3.19997661158;PAX6:-3.39623389427;ZNF143:-3.4311514719;ARID5B:-3.52417937069;YY1:-3.83482201579;bHLH_family:-4.33654466487;HOX{A6,A7,B6,B7}:-4.47849795622
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11390-118C4;search_select_hide=table117:FF:11390-118C4
}}
}}

Latest revision as of 17:57, 4 June 2020

Name:Neutrophils, donor3
Species:Human (Homo sapiens)
Library ID:CNhs11905
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage29 years old adult
sexfemale
age29
cell typeneutrophil
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNeu736
catalog number3H100-94-25
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004721
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11905 CAGE DRX008380 DRR009252
Accession ID Hg19

Library idBAMCTSS
CNhs11905 DRZ000677 DRZ002062
Accession ID Hg38

Library idBAMCTSS
CNhs11905 DRZ012027 DRZ013412
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004721
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.CAGATC sRNA-Seq DRX037208 DRR041574
Accession ID Hg19

Library idBAMCTSS
SRhi10013.CAGATC DRZ007216


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.183
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.405
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.452
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0414
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.151
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.647
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.151
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.262
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.151
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40.151
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural1.178
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.931
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.383
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.262
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast1.224
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.325
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.197
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.159
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.151
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.816
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory1.543
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.87
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole1.06
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.495
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.151
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.137
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.151
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.542
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.396
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.709
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.612
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.591
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.894
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood1.185
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.897
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.542
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11905

Jaspar motifP-value
MA0002.22.44277e-13
MA0003.10.234
MA0004.10.49
MA0006.10.362
MA0007.10.473
MA0009.10.113
MA0014.10.639
MA0017.10.151
MA0018.21.98783e-4
MA0019.10.534
MA0024.10.00227
MA0025.11.47707e-4
MA0027.10.789
MA0028.10.664
MA0029.10.436
MA0030.14.95949e-5
MA0031.10.0013
MA0035.20.91
MA0038.10.0903
MA0039.20.726
MA0040.10.0105
MA0041.10.332
MA0042.10.0677
MA0043.15.61227e-14
MA0046.10.194
MA0047.20.0586
MA0048.10.658
MA0050.17.1593e-5
MA0051.10.037
MA0052.10.0777
MA0055.10.0577
MA0057.10.26
MA0058.10.493
MA0059.10.385
MA0060.14.94136e-6
MA0061.14.31212e-10
MA0062.29.07635e-4
MA0065.20.0955
MA0066.10.0843
MA0067.11.81026e-4
MA0068.10.968
MA0069.10.527
MA0070.10.0429
MA0071.10.318
MA0072.10.904
MA0073.10.192
MA0074.10.381
MA0076.10.938
MA0077.10.282
MA0078.10.522
MA0079.20.747
MA0080.25.16442e-16
MA0081.12.16744e-5
MA0083.10.219
MA0084.10.971
MA0087.10.626
MA0088.10.112
MA0090.10.106
MA0091.10.804
MA0092.10.599
MA0093.10.374
MA0099.24.69803e-9
MA0100.10.939
MA0101.11.73674e-10
MA0102.21.56598e-15
MA0103.10.988
MA0104.20.12
MA0105.11.29583e-9
MA0106.10.186
MA0107.15.74117e-13
MA0108.20.00151
MA0111.10.474
MA0112.20.0149
MA0113.10.725
MA0114.10.619
MA0115.10.631
MA0116.10.00323
MA0117.10.0664
MA0119.10.953
MA0122.10.414
MA0124.10.738
MA0125.10.203
MA0131.10.804
MA0135.10.15
MA0136.11.31327e-20
MA0137.20.0107
MA0138.20.412
MA0139.10.981
MA0140.10.697
MA0141.10.159
MA0142.10.805
MA0143.10.738
MA0144.10.0103
MA0145.10.212
MA0146.10.135
MA0147.10.0847
MA0148.10.317
MA0149.10.956
MA0150.12.57977e-12
MA0152.10.0613
MA0153.10.164
MA0154.10.00291
MA0155.10.596
MA0156.18.8347e-15
MA0157.10.0102
MA0159.10.0515
MA0160.10.055
MA0162.10.971
MA0163.10.0182
MA0164.10.753
MA0258.10.0517
MA0259.10.115



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11905

Novel motifP-value
10.285
100.0797
1000.253
1010.667
1020.832
1030.175
1040.666
1050.34
1062.99429e-4
1070.509
1080.429
1090.253
110.245
1100.671
1110.383
1120.361
1130.47
1140.0292
1150.553
1160.606
1170.0183
1180.144
1190.532
120.436
1200.653
1210.604
1220.85
1230.519
1240.84
1250.225
1260.118
1270.433
1280.0148
1290.807
130.556
1300.634
1310.767
1320.0787
1330.785
1340.506
1350.211
1360.581
1373.74809e-4
1380.148
1390.164
140.259
1400.51
1410.338
1420.484
1430.0252
1440.889
1450.943
1460.407
1470.49
1480.0665
1490.619
150.0713
1500.644
1510.378
1520.162
1530.433
1540.858
1550.147
1560.454
1570.697
1580.00724
1590.453
160.508
1600.612
1610.956
1620.14
1630.562
1640.17
1650.181
1660.929
1670.796
1680.528
1690.0967
170.352
180.157
190.377
20.923
200.619
210.908
220.164
230.00572
240.355
250.251
260.162
270.623
280.265
290.438
30.301
300.767
310.758
320.537
330.302
340.588
350.137
360.34
370.224
380.482
390.779
40.607
400.626
410.00445
420.573
430.0599
440.943
450.435
460.398
470.658
480.755
490.155
50.129
500.983
510.358
520.221
530.429
540.286
550.706
560.66
570.48
580.138
590.0882
60.735
600.0181
610.323
620.0382
630.742
640.569
650.272
660.206
670.556
680.269
690.847
70.279
700.187
710.0557
720.463
730.297
740.0732
750.209
760.242
770.853
780.292
790.515
80.677
800.028
810.41
820.0367
830.306
840.775
850.0677
860.0283
870.424
880.594
890.106
90.161
900.122
910.408
920.226
930.445
940.0509
950.711
960.43
970.971
980.172
990.0124



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11905


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000081 (blood cell)
0000219 (motile cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000094 (granulocyte)
0000775 (neutrophil)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000122 (human neutrophil sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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