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(Created page with "{{f5samples |id=FF:11881-125C9 |name=CD14+ monocytes - treated with IFN + N-hexane, donor3 |sample_id=11881 |rna_tube_id= |rna_box=125 |rna_position=C9 |sample_cell_lot...")
 
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{{f5samples
{{f5samples
|id=FF:11881-125C9
|DRA_sample_Accession=CAGE@SAMD00005007
|name=CD14+ monocytes - treated with IFN + N-hexane, donor3
|accession_numbers=CAGE;DRX008152;DRR009024;DRZ000449;DRZ001834;DRZ011799;DRZ013184
|sample_id=11881
|ancestors_in_anatomy_facet=
|rna_tube_id=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
|rna_box=125
|rna_position=C9
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=D5-2
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=
|sample_donor(cell lot)=donor3
|sample_sex=female
|sample_age=21
|sample_ethnicity=
|rna_rin=9.20000
|rna_od260/230=1.43000
|rna_od260/280=2.01000
|sample_cell_type=monocyte
|sample_cell_line=
|sample_collaboration=Christine Wells (University of Queensland)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=2.74149
|rna_concentration=0.60922
|sample_note=
|profile_hcage=CNhs13490,,,SEQUENCING QUEUE
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000040,CL:0000048,CL:0000049,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000557,CL:0000559,CL:0000566,CL:0000576,CL:0000723,CL:0000738,CL:0000763,CL:0000766,CL:0000837,CL:0000839,CL:0000860,CL:0000988,CL:0001012,CL:0002009,CL:0002031,CL:0002032,CL:0002057,CL:0002087,CL:0002194,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001474,UBERON:0002050,UBERON:0002193,UBERON:0002204,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002532,UBERON:0004120,UBERON:0004765,UBERON:0005423
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000350,FF:0000629,FF:0011443
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.41!2582.07!PLEK;;chr16:85932760..85932775,+!p1@IRF8!3.03!1066.41!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.69!488.45!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.61!402.36!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.28!190.52!TFEC;;chr6:36355431..36355466,-!p1@ETV7!2.18!151.31!ETV7;;chr11:47399947..47399961,-!p3@SPI1!2.14!138.10!SPI1;;chr6:106534192..106534224,+!p1@PRDM1!2.06!308.59!PRDM1;;chr1:25256756..25256774,-!p1@RUNX3!2.04!198.19!RUNX3;;chr20:39317868..39317884,-!p1@MAFB!1.98!1041.69!MAFB;;chr11:64764435..64764449,-!p1@BATF2!1.96!123.18!BATF2;;chr5:131826457..131826514,-!p1@IRF1!1.95!3229.50!IRF1;;chr10:35484053..35484076,+!p1@CREM!1.89!185.41!CREM;;chr11:47400062..47400077,-!p2@SPI1!1.89!76.29!SPI1;;chr7:128577972..128578047,+!p1@IRF5!1.88!114.65!IRF5;;chr2:231084639..231084654,-!p2@SP110!1.87!118.06!SP110;;chr11:615942..615957,-!p1@IRF7!1.86!643.17!IRF7;;chr21:34442439..34442455,+!p1@OLIG1!1.86!70.75!OLIG1;;chr6:106534230..106534254,+!p2@PRDM1!1.84!164.95!PRDM1;;chr2:70142232..70142251,+!p1@MXD1!1.83!357.18!MXD1;;chr12:54778351..54778378,-!p6@ZNF385A!1.82!64.79!ZNF385A;;chr11:47400032..47400043,-!p5@SPI1!1.82!64.36!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.81!63.51!SPI1;;chr10:64576105..64576133,-!p1@EGR2!1.78!118.92!EGR2;;chr19:33793430..33793447,-!p1@CEBPA!1.75!222.06!CEBPA;;chr21:30671690..30671762,+!p2@BACH1!1.73!172.62!BACH1;;chr19:50432132..50432217,+!p2@ATF5!1.70!57.54!ATF5;;chr21:36260295..36260310,-!p3@RUNX1!1.69!76.72!RUNX1;;chr7:50344289..50344323,+!p1@IKZF1!1.68!46.46!IKZF1;;chr14:75988771..75988826,+!p1@BATF!1.65!57.11!BATF;;chr2:68592394..68592405,+!p2@PLEK!1.65!43.47!PLEK;;chr16:31885093..31885165,+!p1@ZNF267!1.63!606.52!ZNF267;;chr2:97202480..97202499,+!p1@ARID5A!1.62!395.11!ARID5A;;chr6:144385698..144385742,-!p2@PLAGL1!1.62!48.59!PLAGL1;;chr2:145277640..145277771,-!p1@ZEB2!1.60!494.85!ZEB2;;chr14:75988831..75988847,+!p2@BATF!1.59!37.51!BATF;;chr1:158985493..158985535,+!p4@IFI16!1.58!55.84!IFI16;;chr17:45810594..45810608,+!p1@TBX21!1.56!34.95!TBX21;;chr19:45971246..45971265,+!p1@FOSB!1.55!606.09!FOSB;;chr12:11802753..11802834,+!p2@ETV6!1.55!161.54!ETV6;;chr10:51572408..51572454,+!p3@NCOA4!1.54!187.97!NCOA4;;chr11:65430554..65430579,-!p3@RELA!1.54!83.97!RELA;;chr1:158979872..158979898,+!p3@IFI16!1.50!92.06!IFI16;;chr10:51572339..51572376,+!p4@NCOA4!1.50!67.77!NCOA4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.48!29.41!ZBED1;;chr21:30671235..30671253,+!p1@BACH1!1.47!348.23!BACH1;;chr21:36421535..36421610,-!p2@RUNX1!1.46!95.47!RUNX1;;chr11:615570..615721,-!p2@IRF7!1.46!54.13!IRF7;;chr11:47400045..47400060,-!p6@SPI1!1.46!27.70!SPI1;;chrX:129244454..129244488,-!p1@ELF4!1.45!190.10!ELF4;;chr11:65430535..65430549,-!p4@RELA!1.44!30.69!RELA;;chr12:48298765..48298783,-!p2@VDR!1.42!52.00!VDR;;chr12:72056800..72056834,+!p1@THAP2!1.42!33.67!THAP2;;chr4:185395590..185395627,-!p3@IRF2!1.41!30.69!IRF2;;chr2:231090471..231090504,+!p2@SP140!1.41!24.72!SP140;;chr2:145275162..145275202,-!p2@ZEB2!1.40!137.24!ZEB2;;chr12:56415246..56415286,+!p2@IKZF4!1.40!23.87!IKZF4;;chr6:391743..391759,+!p1@IRF4!1.40!23.87!IRF4;;chr1:212782094..212782109,+!p1@ATF3!1.39!618.88!ATF3;;chr19:45251395..45251432,+!p8@BCL3!1.39!23.44!BCL3;;chrX:129244430..129244442,-!p5@ELF4!1.39!23.44!ELF4;;chr16:79634624..79634642,-!p1@MAF!1.37!86.52!MAF;;chr12:54694758..54694805,-!p1@NFE2!1.36!26.43!NFE2;;chr11:47399920..47399931,-!p7@SPI1!1.35!21.31!SPI1;;chr21:30672433..30672464,+!p6@BACH1!1.35!21.31!BACH1;;chr3:187455486..187455504,-!p6@BCL6!1.35!21.31!BCL6;;chr7:28725740..28725778,+!p1@CREB5!1.34!181.15!CREB5;;chr2:70314240..70314256,+!p4@PCBP1!1.34!42.20!PCBP1;;chr12:48298785..48298828,-!p1@VDR!1.33!106.13!VDR;;chr9:110250697..110250738,-!p2@KLF4!1.33!23.87!KLF4;;chr7:150946376..150946389,-!p6@SMARCD3!1.33!20.46!SMARCD3;;chr3:187455529..187455544,-!p5@BCL6!1.33!20.46!BCL6;;chr1:25256439..25256476,-!p3@RUNX3!1.33!20.46!RUNX3;;chr9:110252035..110252057,-!p1@KLF4!1.32!307.31!KLF4;;chr12:72056749..72056767,+!p6@THAP2!1.31!21.31!THAP2;;chr17:38497662..38497713,+!p4@RARA!1.30!22.16!RARA;;chr2:231084820..231084836,-!p5@SP110!1.30!21.74!SP110;;chr4:185395633..185395651,-!p2@IRF2!1.29!29.41!IRF2;;chr2:231084659..231084721,-!p1@SP110!1.28!409.18!SP110;;chr19:45250948..45250998,+!p3@BCL3!1.28!44.75!BCL3;;chr18:3449720..3449749,+!p2@TGIF1!1.28!38.36!TGIF1;;chr2:231280954..231280965,+!p2@SP100!1.27!32.39!SP100;;chr1:221052776..221052799,+!p1@HLX!1.27!31.11!HLX;;chr6:106535598..106535637,+!p7@PRDM1!1.27!17.48!PRDM1;;chr10:31288370..31288393,-!p3@ZNF438!1.26!17.05!ZNF438;;chr12:72056773..72056796,+!p3@THAP2!1.25!21.74!THAP2;;chr2:238600998..238601013,+!p5@LRRFIP1!1.25!16.62!LRRFIP1;;chr13:41593425..41593480,-!p1@ELF1!1.24!103.15!ELF1;;chr14:35872453..35872485,-!p2@NFKBIA!1.24!40.07!NFKBIA;;chr19:13213662..13213686,-!p1@LYL1!1.24!24.29!LYL1;;chr3:187455680..187455700,-!p4@BCL6!1.24!16.20!BCL6;;chr10:31288398..31288455,-!p2@ZNF438!1.22!18.33!ZNF438;;chr12:56415287..56415300,+!p5@IKZF4!1.22!15.77!IKZF4;;chr7:17338266..17338282,+!p1@AHR!1.21!160.26!AHR;;chr19:45252008..45252024,+!p2@BCL3!1.21!50.29!BCL3;;chr4:106068026..106068084,+!p1@TET2!1.20!130.85!TET2;;chr3:39195037..39195069,-!p2@CSRNP1!1.20!90.79!CSRNP1;;chr1:8484007..8484061,-!p13@RERE!1.20!18.75!RERE;;chr6:126240463..126240489,+!p6@NCOA7!1.20!16.62!NCOA7;;chr1:158979922..158979933,+!p13@IFI16!1.20!14.92!IFI16;;chr16:3285119..3285133,-!p2@ZNF200!1.19!28.98!ZNF200;;chr1:221052733..221052749,+!p2@HLX!1.19!18.75!HLX;;chr2:231090433..231090469,+!p1@SP140!1.18!14.07!SP140;;chr6:36355486..36355497,-!p3@ETV7!1.18!14.07!ETV7;;chr19:19496539..19496576,+!p8@GATAD2A!1.17!24.29!GATAD2A;;chr3:187463179..187463201,-!p2@BCL6!1.16!55.41!BCL6;;chr8:116681123..116681143,-!p4@TRPS1!1.16!26.00!TRPS1;;chr16:89787973..89788001,+!p3@ZNF276!1.16!26.00!ZNF276;;chr4:103422499..103422632,+!p1@NFKB1!1.15!269.80!NFKB1;;chr6:15246200..15246214,+!p2@JARID2!1.15!35.80!JARID2;;chr16:79634595..79634620,-!p2@MAF!1.15!23.87!MAF;;chr20:56195474..56195506,-!p1@ZBP1!1.15!13.21!ZBP1;;chr10:35484090..35484104,+!p6@CREM!1.15!13.21!CREM;;chr11:2292226..2292270,-!p1@ASCL2!1.15!13.21!ASCL2;;chr3:107318352..107318392,+!p14@BBX!1.15!13.21!BBX;;chr12:96588279..96588299,+!p4@ELK3!1.14!60.10!ELK3;;chr17:38498402..38498445,+!p3@RARA!1.13!45.18!RARA;;chr14:74226747..74226779,-!p3@C14orf43!1.12!68.62!C14orf43;;chr6:126240380..126240430,+!p2@NCOA7!1.12!31.97!NCOA7;;chr8:71316428..71316459,-!p2@NCOA2!1.12!20.46!NCOA2;;chr20:48807351..48807384,+!p1@CEBPB!1.11!1216.45!CEBPB;;chr22:38597987..38598021,+!p2@MAFF!1.11!73.31!MAFF;;chr3:187455634..187455651,-!p7@BCL6!1.11!11.93!BCL6;;chr19:45251943..45252006,+!p1@BCL3!1.10!303.05!BCL3;;chr9:129567282..129567353,+!p1@ZBTB43!1.10!151.31!ZBTB43;;chr12:96588219..96588263,+!p2@ELK3!1.10!83.97!ELK3;;chr2:145277882..145277967,-!p3@ZEB2!1.10!20.03!ZEB2;;chr21:34442540..34442560,+!p2@OLIG1!1.10!11.51!OLIG1;;chr17:38498594..38498661,+!p2@RARA!1.09!38.36!RARA;;chr7:17338324..17338341,+!p3@AHR!1.09!37.93!AHR;;chr3:12329397..12329433,+!p2@PPARG!1.09!26.00!PPARG;;chr21:36260343..36260402,-!p6@RUNX1!1.09!18.33!RUNX1;;chr6:44233252..44233296,-!p1@NFKBIE!1.08!108.26!NFKBIE;;chr10:104155480..104155534,+!p2@NFKB2!1.08!72.46!NFKB2;;chr19:12721790..12721810,+!p2@ZNF791!1.08!30.26!ZNF791;;chr1:221053049..221053075,+!p3@HLX!1.08!19.18!HLX;;chr2:28618532..28618610,+!p4@FOSL2!1.08!18.75!FOSL2;;chr14:75745523..75745537,+!p1@FOS!1.07!1275.69!FOS;;chr14:74226961..74227020,-!p1@C14orf43!1.07!71.61!C14orf43;;chr2:238600933..238600985,+!p3@LRRFIP1!1.07!58.82!LRRFIP1;;chr12:54785074..54785122,-!p2@ZNF385A!1.07!16.62!ZNF385A;;chrX:153305787..153305807,-!p3@MECP2!1.07!10.66!MECP2;;chr12:56753869..56753930,-!p1@STAT2!1.05!451.37!STAT2;;chr3:170075436..170075520,+!p1@SKIL!1.05!223.34!SKIL;;chr10:3827371..3827386,-!p2@KLF6!1.05!87.80!KLF6;;chr18:3449618..3449634,+!p13@TGIF1!1.05!12.79!TGIF1;;chr21:34398234..34398250,+!p1@OLIG2!1.05!10.23!OLIG2;;chr12:96588368..96588394,+!p3@ELK3!1.04!27.28!ELK3;;chr9:3525727..3525828,-!p2@RFX3!1.04!26.00!RFX3;;chr4:185395191..185395226,-!p4@IRF2!1.04!14.07!IRF2;;chr19:45254529..45254561,+!p10@BCL3!1.04!13.64!BCL3;;chr14:35873947..35873965,-!p1@NFKBIA!1.03!618.03!NFKBIA;;chr14:24630465..24630531,+!p1@IRF9!1.03!373.37!IRF9;;chr3:107318229..107318239,+!p17@BBX!1.03!9.80!BBX;;chr1:158979792..158979814,+!p2@IFI16!1.02!92.06!IFI16;;chr10:104154246..104154347,+!p3@NFKB2!1.02!59.25!NFKB2;;chr1:158979851..158979865,+!p5@IFI16!1.02!21.31!IFI16;;chr12:54785054..54785072,-!p4@ZNF385A!1.02!10.66!ZNF385A;;chr20:48599506..48599526,+!p1@SNAI1!1.01!60.52!SNAI1;;chr12:124873852..124873881,-!p3@NCOR2!1.01!56.26!NCOR2;;chr2:157189180..157189290,-!p1@NR4A2!1.01!49.02!NR4A2;;chr3:37217736..37217753,-!p2@LRRFIP2!1.01!39.21!LRRFIP2;;chr10:35484804..35484902,+!p2@CREM!1.01!36.23!CREM;;chr2:185463247..185463263,+!p1@ZNF804A!1.01!16.62!ZNF804A;;chr12:11802932..11802949,+!p3@ETV6!1.01!16.20!ETV6;;chr7:150974206..150974255,-!p1@SMARCD3!0.99!56.69!SMARCD3;;chr19:42636586..42636607,-!p1@POU2F2!0.99!24.72!POU2F2;;chr5:142782823..142782854,-!p3@NR3C1!0.99!12.79!NR3C1;;chr21:36260980..36261011,-!p1@RUNX1!0.98!252.75!RUNX1;;chrX:106960285..106960299,-!p1@TSC22D3!0.98!236.55!TSC22D3;;chr5:172483347..172483407,+!p1@C5orf41!0.98!65.64!CREBRF;;chr8:116681150..116681164,-!p5@TRPS1!0.98!17.05!TRPS1;;chr2:70167296..70167306,+!p3@MXD1!0.98!13.21!MXD1;;chr2:191885737..191885750,-!p4@STAT1!0.98!8.52!STAT1;;chr7:50343634..50343717,+!p2@IKZF1!0.98!8.52!IKZF1;;chr1:158985686..158985719,+!p15@IFI16!0.98!8.52!IFI16;;chr21:36260325..36260341,-!p14@RUNX1!0.98!8.52!RUNX1;;chr8:116681194..116681214,-!p1@TRPS1!0.97!79.70!TRPS1;;chr2:70142189..70142223,+!p2@MXD1!0.97!61.38!MXD1;;chr2:61108695..61108753,+!p1@REL!0.97!58.82!REL;;chr14:35872962..35873025,-!p3@NFKBIA!0.97!21.31!NFKBIA;;chr7:99156393..99156433,+!p6@ZNF655!0.97!19.18!ZNF655;;chr20:47894569..47894799,-!p1@ZNFX1!0.96!222.06!ZNFX1;;chr7:139762641..139762768,-!p1@PARP12!0.96!113.80!PARP12;;chr4:26322267..26322334,+!p3@RBPJ!0.96!20.03!RBPJ;;c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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=EFO:0000369,FF:0000629,FF:0011443,FF:11881-125C9
|fonse_treatment=EFO:0000369,FF:0000629,FF:0011443,FF:11881-125C9
|fonse_treatment_closure=EFO:0000369,FF:0000629,FF:0011443,FF:11881-125C9
|fonse_treatment_closure=EFO:0000369,FF:0000629,FF:0011443,FF:11881-125C9
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor3.CNhs13490.11881-125C9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor3.CNhs13490.11881-125C9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor3.CNhs13490.11881-125C9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor3.CNhs13490.11881-125C9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor3.CNhs13490.11881-125C9.hg38.nobarcode.ctss.bed.gz
|id=FF:11881-125C9
|is_a=EFO:0002091;;FF:0011443
|is_obsolete=
|library_id=CNhs13490
|library_id_phase_based=2:CNhs13490
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11881
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11881
|name=CD14+ monocytes - treated with IFN + N-hexane, donor3
|namespace=
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs13490,LSID1025,release012,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
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|rna_box=125
|rna_catalog_number=
|rna_concentration=0.60922
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=D5-2
|rna_od260/230=1.43
|rna_od260/280=2.01
|rna_position=C9
|rna_rin=9.2
|rna_sample_type=total RNA
|rna_tube_id=125C9
|rna_weight_ug=2.74149
|sample_age=21
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=monocyte
|sample_collaboration=Christine Wells (University of Queensland)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=donor3
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.6176263170445e-274!GO:0005737;cytoplasm;1.03065230499158e-126!GO:0043227;membrane-bound organelle;2.42277106475407e-115!GO:0043231;intracellular membrane-bound organelle;5.54554006044635e-115!GO:0043226;organelle;5.55411599191135e-107!GO:0043229;intracellular organelle;4.02405632938282e-106!GO:0044444;cytoplasmic part;4.99615367152811e-83!GO:0044422;organelle part;5.77244765401429e-69!GO:0005515;protein binding;3.58048158421842e-68!GO:0044446;intracellular organelle part;2.02703054381035e-67!GO:0044237;cellular metabolic process;4.85500174246303e-67!GO:0044238;primary metabolic process;6.38121720991716e-65!GO:0043170;macromolecule metabolic process;1.94534114459709e-64!GO:0032991;macromolecular complex;1.13265365920988e-58!GO:0003723;RNA binding;8.84959985385312e-56!GO:0030529;ribonucleoprotein complex;6.37742151337624e-51!GO:0019538;protein metabolic process;8.90921016000876e-50!GO:0044260;cellular macromolecule metabolic process;1.69776053223543e-47!GO:0044267;cellular protein metabolic process;1.75568002459149e-47!GO:0044428;nuclear part;9.09311965504694e-47!GO:0005634;nucleus;1.77733914118027e-45!GO:0033036;macromolecule localization;1.6354747990571e-41!GO:0015031;protein transport;4.90192800670202e-40!GO:0045184;establishment of protein localization;5.00580149794383e-40!GO:0006412;translation;1.0200390355354e-39!GO:0043233;organelle lumen;3.9677308488179e-39!GO:0031974;membrane-enclosed lumen;3.9677308488179e-39!GO:0008104;protein localization;1.12119172172464e-38!GO:0005829;cytosol;3.15046732142972e-35!GO:0043283;biopolymer metabolic process;1.37765011261941e-34!GO:0031090;organelle membrane;1.8192614144808e-32!GO:0006396;RNA processing;3.78802104263622e-32!GO:0010467;gene expression;5.72832785760305e-32!GO:0016071;mRNA metabolic process;1.22212304329263e-31!GO:0006915;apoptosis;5.13745626731737e-30!GO:0012501;programmed cell death;5.41963504646985e-30!GO:0005739;mitochondrion;1.21746677821818e-29!GO:0031981;nuclear lumen;1.79996670425456e-29!GO:0043234;protein complex;1.87007383374843e-29!GO:0009059;macromolecule biosynthetic process;2.36325084273583e-29!GO:0008219;cell death;5.49025090749641e-29!GO:0016265;death;5.49025090749641e-29!GO:0008380;RNA splicing;6.50217069220476e-28!GO:0046907;intracellular transport;3.3027900321951e-27!GO:0006397;mRNA processing;3.48293515500908e-27!GO:0006886;intracellular protein transport;1.30561734589533e-26!GO:0044249;cellular biosynthetic process;1.6639417422159e-26!GO:0009058;biosynthetic process;2.17059363865322e-26!GO:0005840;ribosome;3.1421187457962e-26!GO:0016043;cellular component organization and biogenesis;2.83850043940566e-25!GO:0031967;organelle envelope;4.86448024722874e-25!GO:0031975;envelope;8.79693826970984e-25!GO:0003735;structural constituent of ribosome;5.30888596403439e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.3008641131714e-23!GO:0033279;ribosomal subunit;1.85323661556303e-22!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.07621763226647e-22!GO:0000166;nucleotide binding;1.07694715052881e-21!GO:0044429;mitochondrial part;3.14450159041987e-21!GO:0044445;cytosolic part;4.57657022688125e-21!GO:0051649;establishment of cellular localization;5.41198928293581e-21!GO:0005654;nucleoplasm;1.55386106485746e-20!GO:0051641;cellular localization;1.68014094392062e-20!GO:0005681;spliceosome;2.16525744336582e-20!GO:0008134;transcription factor binding;1.05960262626096e-19!GO:0042981;regulation of apoptosis;3.72784380037865e-19!GO:0043067;regulation of programmed cell death;7.69808171731662e-19!GO:0006512;ubiquitin cycle;9.53214969827099e-19!GO:0065003;macromolecular complex assembly;1.23958885273222e-18!GO:0043412;biopolymer modification;2.84998202154825e-18!GO:0044265;cellular macromolecule catabolic process;2.8884088636005e-18!GO:0016192;vesicle-mediated transport;1.34537211647114e-17!GO:0044451;nucleoplasm part;1.42336913099212e-17!GO:0007243;protein kinase cascade;2.51999984321198e-17!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.06237400857669e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.662394533521e-17!GO:0016462;pyrophosphatase activity;7.93788308547859e-17!GO:0006464;protein modification process;8.04115588330766e-17!GO:0006119;oxidative phosphorylation;8.21962681035575e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;9.94874420462167e-17!GO:0017111;nucleoside-triphosphatase activity;2.52942491380792e-16!GO:0032553;ribonucleotide binding;3.64638885748144e-16!GO:0032555;purine ribonucleotide binding;3.64638885748144e-16!GO:0043687;post-translational protein modification;4.86264962389997e-16!GO:0005740;mitochondrial envelope;7.42405217541857e-16!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.26074429597688e-15!GO:0017076;purine nucleotide binding;1.32778912352643e-15!GO:0048523;negative regulation of cellular process;1.57298760991347e-15!GO:0043285;biopolymer catabolic process;2.20969354274264e-15!GO:0048770;pigment granule;2.50959427939012e-15!GO:0042470;melanosome;2.50959427939012e-15!GO:0031966;mitochondrial membrane;2.65267037316552e-15!GO:0019941;modification-dependent protein catabolic process;3.36176881203126e-15!GO:0043632;modification-dependent macromolecule catabolic process;3.36176881203126e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;4.49723812214996e-15!GO:0002376;immune system process;4.71697004669666e-15!GO:0044257;cellular protein catabolic process;5.36946115568427e-15!GO:0019866;organelle inner membrane;6.51408518342666e-15!GO:0006511;ubiquitin-dependent protein catabolic process;7.14185914040605e-15!GO:0022607;cellular component assembly;7.4935536088534e-15!GO:0022618;protein-RNA complex assembly;9.46984457118173e-15!GO:0009057;macromolecule catabolic process;1.29954220818566e-14!GO:0005773;vacuole;1.53435482423989e-14!GO:0016874;ligase activity;1.63165198373928e-14!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.74021111645822e-14!GO:0003676;nucleic acid binding;2.77552155164567e-14!GO:0016604;nuclear body;4.28494543665769e-14!GO:0006605;protein targeting;1.43966351022683e-13!GO:0016070;RNA metabolic process;1.61609900598611e-13!GO:0048519;negative regulation of biological process;1.88456296741632e-13!GO:0007242;intracellular signaling cascade;1.93211317007405e-13!GO:0044248;cellular catabolic process;2.46833632890273e-13!GO:0000323;lytic vacuole;3.67082283769827e-13!GO:0005764;lysosome;3.67082283769827e-13!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.77002731572138e-13!GO:0000502;proteasome complex (sensu Eukaryota);9.40012988413971e-13!GO:0006793;phosphorus metabolic process;2.18664991707252e-12!GO:0006796;phosphate metabolic process;2.18664991707252e-12!GO:0050794;regulation of cellular process;2.18664991707252e-12!GO:0005794;Golgi apparatus;2.71032469539702e-12!GO:0005743;mitochondrial inner membrane;2.75413330663126e-12!GO:0012505;endomembrane system;3.23654371184644e-12!GO:0015934;large ribosomal subunit;3.28994177852817e-12!GO:0006913;nucleocytoplasmic transport;4.17204518325503e-12!GO:0016607;nuclear speck;4.31345292038683e-12!GO:0044455;mitochondrial membrane part;4.31345292038683e-12!GO:0006457;protein folding;4.68937954043762e-12!GO:0043069;negative regulation of programmed cell death;5.05098816078733e-12!GO:0030163;protein catabolic process;5.3740960430426e-12!GO:0006996;organelle organization and biogenesis;5.44952347143618e-12!GO:0003712;transcription cofactor activity;5.54497942736366e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.54523612154058e-12!GO:0006955;immune response;5.60671433612001e-12!GO:0043066;negative regulation of apoptosis;6.13428065411362e-12!GO:0051169;nuclear transport;7.27711078062998e-12!GO:0006950;response to stress;8.12232060773633e-12!GO:0005768;endosome;8.13348898102896e-12!GO:0009615;response to virus;9.1403381818905e-12!GO:0005524;ATP binding;1.02956604271125e-11!GO:0051246;regulation of protein metabolic process;1.17554768646624e-11!GO:0008135;translation factor activity, nucleic acid binding;1.1953164830246e-11!GO:0032559;adenyl ribonucleotide binding;2.27134670037958e-11!GO:0016310;phosphorylation;3.28284960833045e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.6899320003387e-11!GO:0065009;regulation of a molecular function;4.09927576973415e-11!GO:0015935;small ribosomal subunit;4.13234943905261e-11!GO:0030554;adenyl nucleotide binding;8.75666786241988e-11!GO:0006366;transcription from RNA polymerase II promoter;2.05213275724029e-10!GO:0006259;DNA metabolic process;2.71132093093868e-10!GO:0003743;translation initiation factor activity;2.83454974218344e-10!GO:0008639;small protein conjugating enzyme activity;3.6005584535199e-10!GO:0016787;hydrolase activity;5.00699531981329e-10!GO:0051186;cofactor metabolic process;5.13498932696543e-10!GO:0006413;translational initiation;5.13498932696543e-10!GO:0019787;small conjugating protein ligase activity;5.34712823913291e-10!GO:0009967;positive regulation of signal transduction;5.59244454685296e-10!GO:0006446;regulation of translational initiation;6.7129255826632e-10!GO:0004842;ubiquitin-protein ligase activity;7.06706598781698e-10!GO:0006916;anti-apoptosis;8.55373921818456e-10!GO:0005746;mitochondrial respiratory chain;1.11274927298475e-09!GO:0051082;unfolded protein binding;1.22492103577301e-09!GO:0050789;regulation of biological process;1.76970319964318e-09!GO:0005635;nuclear envelope;2.51767670594085e-09!GO:0048522;positive regulation of cellular process;2.74983566488037e-09!GO:0048193;Golgi vesicle transport;2.81473960482924e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.08085916000744e-09!GO:0006732;coenzyme metabolic process;3.30803710810444e-09!GO:0005730;nucleolus;4.14188519642019e-09!GO:0050136;NADH dehydrogenase (quinone) activity;4.18449794285159e-09!GO:0003954;NADH dehydrogenase activity;4.18449794285159e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.18449794285159e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;5.21161473252828e-09!GO:0000375;RNA splicing, via transesterification reactions;5.21161473252828e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.21161473252828e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.22559460379391e-09!GO:0009607;response to biotic stimulus;7.63331494716202e-09!GO:0048518;positive regulation of biological process;8.59459416696987e-09!GO:0016887;ATPase activity;9.27834030205695e-09!GO:0031324;negative regulation of cellular metabolic process;9.50323192567084e-09!GO:0005783;endoplasmic reticulum;1.33670063986261e-08!GO:0009056;catabolic process;1.54703296385317e-08!GO:0016881;acid-amino acid ligase activity;1.69661238431099e-08!GO:0042623;ATPase activity, coupled;1.75663557309752e-08!GO:0015986;ATP synthesis coupled proton transport;1.80038932872223e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.80038932872223e-08!GO:0017038;protein import;1.90870943315664e-08!GO:0006417;regulation of translation;2.22179560192389e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.49350349827366e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.61053531016444e-08!GO:0005770;late endosome;3.3810372543205e-08!GO:0019829;cation-transporting ATPase activity;3.41712732626838e-08!GO:0043065;positive regulation of apoptosis;3.57150030818936e-08!GO:0043068;positive regulation of programmed cell death;5.54277838827432e-08!GO:0016564;transcription repressor activity;5.8945165861036e-08!GO:0042775;organelle ATP synthesis coupled electron transport;6.08456889932227e-08!GO:0042773;ATP synthesis coupled electron transport;6.08456889932227e-08!GO:0009150;purine ribonucleotide metabolic process;6.28270211231946e-08!GO:0009259;ribonucleotide metabolic process;6.44170500284515e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.47281250523354e-08!GO:0044453;nuclear membrane part;7.40213791575549e-08!GO:0065007;biological regulation;7.56908765311389e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.10380305580086e-08!GO:0006163;purine nucleotide metabolic process;9.66951751465814e-08!GO:0006164;purine nucleotide biosynthetic process;1.12331041252141e-07!GO:0050790;regulation of catalytic activity;1.13263604320363e-07!GO:0030964;NADH dehydrogenase complex (quinone);1.13263604320363e-07!GO:0045271;respiratory chain complex I;1.13263604320363e-07!GO:0005747;mitochondrial respiratory chain complex I;1.13263604320363e-07!GO:0005525;GTP binding;1.28432270740164e-07!GO:0051170;nuclear import;1.36102808531843e-07!GO:0006754;ATP biosynthetic process;1.45461309949467e-07!GO:0006753;nucleoside phosphate metabolic process;1.45461309949467e-07!GO:0003924;GTPase activity;1.49743922369426e-07!GO:0051726;regulation of cell cycle;1.54738784877008e-07!GO:0003713;transcription coactivator activity;1.55029268837262e-07!GO:0009260;ribonucleotide biosynthetic process;1.60023113599402e-07!GO:0000074;regulation of progression through cell cycle;1.79869778944157e-07!GO:0009892;negative regulation of metabolic process;1.93903480656872e-07!GO:0006606;protein import into nucleus;2.08959820459093e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.11955974861742e-07!GO:0031965;nuclear membrane;2.17316131995605e-07!GO:0006917;induction of apoptosis;2.30007156508354e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.30233690371124e-07!GO:0008565;protein transporter activity;2.56829010261288e-07!GO:0012502;induction of programmed cell death;3.73429952582838e-07!GO:0007264;small GTPase mediated signal transduction;3.73663304830488e-07!GO:0009966;regulation of signal transduction;4.58023133952438e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.70179370948409e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.70179370948409e-07!GO:0007049;cell cycle;4.85051326671043e-07!GO:0005793;ER-Golgi intermediate compartment;4.97820476502169e-07!GO:0008047;enzyme activator activity;5.04241873100556e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.21116600586574e-07!GO:0016481;negative regulation of transcription;5.43993477472016e-07!GO:0005774;vacuolar membrane;5.4854344302628e-07!GO:0046034;ATP metabolic process;6.27262549528583e-07!GO:0009142;nucleoside triphosphate biosynthetic process;6.28797679102443e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.28797679102443e-07!GO:0048468;cell development;7.22418267637665e-07!GO:0009055;electron carrier activity;7.27604827279813e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.35264045288566e-07!GO:0004386;helicase activity;7.62107221206995e-07!GO:0044440;endosomal part;7.92483026666982e-07!GO:0010008;endosome membrane;7.92483026666982e-07!GO:0031980;mitochondrial lumen;7.92483026666982e-07!GO:0005759;mitochondrial matrix;7.92483026666982e-07!GO:0045786;negative regulation of progression through cell cycle;7.97706183703542e-07!GO:0043228;non-membrane-bound organelle;8.00939786150057e-07!GO:0043232;intracellular non-membrane-bound organelle;8.00939786150057e-07!GO:0044432;endoplasmic reticulum part;8.8446120241324e-07!GO:0031326;regulation of cellular biosynthetic process;9.87638771463228e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.03985574858726e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.03985574858726e-06!GO:0006752;group transfer coenzyme metabolic process;1.06508830773519e-06!GO:0019899;enzyme binding;1.19509910552595e-06!GO:0050657;nucleic acid transport;1.27394658044396e-06!GO:0051236;establishment of RNA localization;1.27394658044396e-06!GO:0050658;RNA transport;1.27394658044396e-06!GO:0009889;regulation of biosynthetic process;1.2909528662186e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.30989776010538e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.37965048005126e-06!GO:0009108;coenzyme biosynthetic process;1.72887155484944e-06!GO:0051188;cofactor biosynthetic process;1.77639129247163e-06!GO:0006403;RNA localization;1.82888882035116e-06!GO:0006974;response to DNA damage stimulus;1.83835863481193e-06!GO:0008026;ATP-dependent helicase activity;2.0092989892622e-06!GO:0044437;vacuolar part;2.19977243623999e-06!GO:0016044;membrane organization and biogenesis;2.35221286003269e-06!GO:0032561;guanyl ribonucleotide binding;2.56258779119665e-06!GO:0019001;guanyl nucleotide binding;2.56258779119665e-06!GO:0009141;nucleoside triphosphate metabolic process;2.71874177683401e-06!GO:0019222;regulation of metabolic process;2.74494103196353e-06!GO:0032446;protein modification by small protein conjugation;3.56447057481814e-06!GO:0005765;lysosomal membrane;3.64323411094818e-06!GO:0005643;nuclear pore;3.93312201881622e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.10189865322472e-06!GO:0006461;protein complex assembly;4.87820105409789e-06!GO:0016568;chromatin modification;5.44868673731264e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.038162874821e-06!GO:0015399;primary active transmembrane transporter activity;6.038162874821e-06!GO:0016567;protein ubiquitination;7.13992461317256e-06!GO:0004298;threonine endopeptidase activity;7.23198083032125e-06!GO:0043566;structure-specific DNA binding;7.74199332391379e-06!GO:0016563;transcription activator activity;8.08076019299377e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.99620963627319e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;8.99984494924564e-06!GO:0003714;transcription corepressor activity;9.94337461382222e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.07891288662996e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.25143084045151e-05!GO:0016197;endosome transport;1.31981177851972e-05!GO:0005789;endoplasmic reticulum membrane;1.44227758360378e-05!GO:0003724;RNA helicase activity;1.5679720921512e-05!GO:0006954;inflammatory response;1.61069778142979e-05!GO:0051028;mRNA transport;1.62650405617739e-05!GO:0031252;leading edge;1.75996798051764e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;1.81829712401074e-05!GO:0031982;vesicle;2.25030488655943e-05!GO:0046930;pore complex;3.21031674748317e-05!GO:0005096;GTPase activator activity;3.49123890475549e-05!GO:0003697;single-stranded DNA binding;3.51932726733407e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.64050289977803e-05!GO:0006323;DNA packaging;4.21345646378277e-05!GO:0006401;RNA catabolic process;4.61990229938041e-05!GO:0030695;GTPase regulator activity;5.57899807980382e-05!GO:0048475;coated membrane;5.79695465839014e-05!GO:0030117;membrane coat;5.79695465839014e-05!GO:0030120;vesicle coat;6.25492986461149e-05!GO:0030662;coated vesicle membrane;6.25492986461149e-05!GO:0051336;regulation of hydrolase activity;6.25720005153805e-05!GO:0043492;ATPase activity, coupled to movement of substances;6.2871911091146e-05!GO:0051789;response to protein stimulus;6.3121886088778e-05!GO:0006986;response to unfolded protein;6.3121886088778e-05!GO:0006281;DNA repair;6.69737255834865e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;7.58656861973906e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.82311336262758e-05!GO:0051707;response to other organism;8.82311336262758e-05!GO:0065002;intracellular protein transport across a membrane;8.84955079454908e-05!GO:0005769;early endosome;9.0257753837318e-05!GO:0009060;aerobic respiration;9.81894860054943e-05!GO:0001816;cytokine production;9.83693015278597e-05!GO:0006613;cotranslational protein targeting to membrane;9.94790202769445e-05!GO:0045259;proton-transporting ATP synthase complex;0.000105742460257539!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000106352134009868!GO:0004674;protein serine/threonine kinase activity;0.000108133885713504!GO:0008234;cysteine-type peptidase activity;0.000115746292365098!GO:0030099;myeloid cell differentiation;0.000119867527456209!GO:0031902;late endosome membrane;0.000119867527456209!GO:0006897;endocytosis;0.000119867527456209!GO:0010324;membrane invagination;0.000119867527456209!GO:0000245;spliceosome assembly;0.000129141671342329!GO:0031410;cytoplasmic vesicle;0.000141755721922448!GO:0000151;ubiquitin ligase complex;0.000141755721922448!GO:0051168;nuclear export;0.000147132298705918!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000163780734036166!GO:0030532;small nuclear ribonucleoprotein complex;0.000166038406162664!GO:0005083;small GTPase regulator activity;0.000167882908351469!GO:0031323;regulation of cellular metabolic process;0.00017498103980655!GO:0022402;cell cycle process;0.000175152331238824!GO:0044431;Golgi apparatus part;0.000176111120746704!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000186619114320555!GO:0016740;transferase activity;0.000188498725911357!GO:0042254;ribosome biogenesis and assembly;0.000214778344562363!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00021651734817096!GO:0006402;mRNA catabolic process;0.000218256672408346!GO:0008632;apoptotic program;0.000227491514019517!GO:0005057;receptor signaling protein activity;0.000236441195316473!GO:0008186;RNA-dependent ATPase activity;0.000249624162234099!GO:0005885;Arp2/3 protein complex;0.00025541660179468!GO:0006818;hydrogen transport;0.000258383497577328!GO:0032940;secretion by cell;0.000279956695908925!GO:0031988;membrane-bound vesicle;0.000303108265760884!GO:0007265;Ras protein signal transduction;0.000304280097642196!GO:0030097;hemopoiesis;0.000341641393280555!GO:0005761;mitochondrial ribosome;0.000356307938744618!GO:0000313;organellar ribosome;0.000356307938744618!GO:0005667;transcription factor complex;0.000387518742820158!GO:0015992;proton transport;0.000387679014417079!GO:0005798;Golgi-associated vesicle;0.000390353913834149!GO:0046983;protein dimerization activity;0.00040155975002129!GO:0046822;regulation of nucleocytoplasmic transport;0.000419570927719655!GO:0051276;chromosome organization and biogenesis;0.000432914839236579!GO:0045892;negative regulation of transcription, DNA-dependent;0.000440970509360376!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000452137120333628!GO:0007034;vacuolar transport;0.000470444238048124!GO:0009719;response to endogenous stimulus;0.000527465787754284!GO:0022890;inorganic cation transmembrane transporter activity;0.000610299352169137!GO:0007259;JAK-STAT cascade;0.000613019594211334!GO:0007050;cell cycle arrest;0.00062940887608528!GO:0045333;cellular respiration;0.00063660531722626!GO:0001726;ruffle;0.000651842198818653!GO:0007005;mitochondrion organization and biogenesis;0.000652044548032152!GO:0051427;hormone receptor binding;0.000679941142472713!GO:0004004;ATP-dependent RNA helicase activity;0.000718283643418835!GO:0009893;positive regulation of metabolic process;0.00072971031755039!GO:0006612;protein targeting to membrane;0.000732718981077716!GO:0006952;defense response;0.000748963752712156!GO:0007041;lysosomal transport;0.000770959157867755!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000807521060002326!GO:0004812;aminoacyl-tRNA ligase activity;0.000807521060002326!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000807521060002326!GO:0005637;nuclear inner membrane;0.000888023486934526!GO:0008654;phospholipid biosynthetic process;0.000902674643449918!GO:0007040;lysosome organization and biogenesis;0.000910714159705608!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.000919136108593174!GO:0016023;cytoplasmic membrane-bound vesicle;0.000921113844271394!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000921113844271394!GO:0003729;mRNA binding;0.00101359794186997!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00102499872772882!GO:0018193;peptidyl-amino acid modification;0.00102695702420645!GO:0045321;leukocyte activation;0.00104409838578645!GO:0035257;nuclear hormone receptor binding;0.00109610896223083!GO:0051090;regulation of transcription factor activity;0.00111115582748487!GO:0016301;kinase activity;0.00117843300505911!GO:0005099;Ras GTPase activator activity;0.00118350172641711!GO:0043087;regulation of GTPase activity;0.00119941748043405!GO:0051338;regulation of transferase activity;0.00127344100537042!GO:0046519;sphingoid metabolic process;0.0013659251112082!GO:0010468;regulation of gene expression;0.00137303945857778!GO:0009117;nucleotide metabolic process;0.00142006348714456!GO:0043038;amino acid activation;0.00142740207942007!GO:0006418;tRNA aminoacylation for protein translation;0.00142740207942007!GO:0043039;tRNA aminoacylation;0.00142740207942007!GO:0051223;regulation of protein transport;0.00145449132937198!GO:0019221;cytokine and chemokine mediated signaling pathway;0.00147546548464215!GO:0002757;immune response-activating signal transduction;0.0016921577662666!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00174482466321085!GO:0044262;cellular carbohydrate metabolic process;0.00180613790490836!GO:0043549;regulation of kinase activity;0.00203500728007457!GO:0006468;protein amino acid phosphorylation;0.00204879464272471!GO:0002252;immune effector process;0.00207722620257059!GO:0007033;vacuole organization and biogenesis;0.00217527242743739!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00218128415420519!GO:0030036;actin cytoskeleton organization and biogenesis;0.00218128415420519!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00218580978257603!GO:0033157;regulation of intracellular protein transport;0.00219737926259296!GO:0042306;regulation of protein import into nucleus;0.00219737926259296!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00234027515038594!GO:0006672;ceramide metabolic process;0.00238867820973719!GO:0051187;cofactor catabolic process;0.00244429646282592!GO:0006099;tricarboxylic acid cycle;0.0025076713093011!GO:0046356;acetyl-CoA catabolic process;0.0025076713093011!GO:0006399;tRNA metabolic process;0.00252667972133202!GO:0030149;sphingolipid catabolic process;0.00256179637846863!GO:0002274;myeloid leukocyte activation;0.00260445886983531!GO:0022415;viral reproductive process;0.00268226085623024!GO:0043623;cellular protein complex assembly;0.00268226085623024!GO:0045859;regulation of protein kinase activity;0.00283978802507183!GO:0016363;nuclear matrix;0.00296184163710209!GO:0033116;ER-Golgi intermediate compartment membrane;0.00309155647997486!GO:0002764;immune response-regulating signal transduction;0.0035079741138431!GO:0003690;double-stranded DNA binding;0.00352658451420438!GO:0002520;immune system development;0.00370003956492515!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00381160687529377!GO:0006643;membrane lipid metabolic process;0.00396741135746456!GO:0004197;cysteine-type endopeptidase activity;0.00408258218806963!GO:0000139;Golgi membrane;0.00409363586625523!GO:0016072;rRNA metabolic process;0.00419564221305688!GO:0016779;nucleotidyltransferase activity;0.00422012144372678!GO:0005741;mitochondrial outer membrane;0.00434200201930558!GO:0045941;positive regulation of transcription;0.00437888551527858!GO:0045637;regulation of myeloid cell differentiation;0.00451029150060159!GO:0031072;heat shock protein binding;0.00454634739254054!GO:0002250;adaptive immune response;0.00454634739254054!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.00454634739254054!GO:0006919;caspase activation;0.00454634739254054!GO:0006364;rRNA processing;0.00458905881806295!GO:0009611;response to wounding;0.00468348783080096!GO:0006091;generation of precursor metabolites and energy;0.00490125461328588!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00503765738640619!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00503765738640619!GO:0006084;acetyl-CoA metabolic process;0.00504233376181692!GO:0031901;early endosome membrane;0.0050551601101574!GO:0045893;positive regulation of transcription, DNA-dependent;0.005144463978042!GO:0031325;positive regulation of cellular metabolic process;0.00517715205089326!GO:0060090;molecular adaptor activity;0.00527193684912408!GO:0043021;ribonucleoprotein binding;0.00561187443027111!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00570968126434177!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00570968126434177!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00570968126434177!GO:0048534;hemopoietic or lymphoid organ development;0.00574167828772685!GO:0043281;regulation of caspase activity;0.00574167828772685!GO:0045454;cell redox homeostasis;0.00578070020550603!GO:0006607;NLS-bearing substrate import into nucleus;0.00583827525485733!GO:0016251;general RNA polymerase II transcription factor activity;0.00589562181570011!GO:0042990;regulation of transcription factor import into nucleus;0.00591223934338331!GO:0042991;transcription factor import into nucleus;0.00591223934338331!GO:0006458;'de novo' protein folding;0.00607111090052945!GO:0051084;'de novo' posttranslational protein folding;0.00607111090052945!GO:0043433;negative regulation of transcription factor activity;0.00612995863413694!GO:0001817;regulation of cytokine production;0.00614233070946838!GO:0045045;secretory pathway;0.00631425268729101!GO:0006891;intra-Golgi vesicle-mediated transport;0.00632090858378519!GO:0048487;beta-tubulin binding;0.0065051223731303!GO:0003725;double-stranded RNA binding;0.0065221361974907!GO:0009109;coenzyme catabolic process;0.00656713848560149!GO:0042110;T cell activation;0.00690945437628728!GO:0043280;positive regulation of caspase activity;0.00699253409095444!GO:0006350;transcription;0.00730377578686815!GO:0032318;regulation of Ras GTPase activity;0.00779786166808849!GO:0043085;positive regulation of catalytic activity;0.00811264485059072!GO:0030041;actin filament polymerization;0.00813892753173091!GO:0004185;serine carboxypeptidase activity;0.00844382160427651!GO:0002440;production of molecular mediator of immune response;0.00853896350458999!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.00858465955211997!GO:0006414;translational elongation;0.0087977002715846!GO:0008383;manganese superoxide dismutase activity;0.00969595001042368!GO:0001315;age-dependent response to reactive oxygen species;0.00969595001042368!GO:0005813;centrosome;0.00974183349926837!GO:0002521;leukocyte differentiation;0.00975897939654225!GO:0030693;caspase activity;0.0101533943070263!GO:0032386;regulation of intracellular transport;0.0104442449701831!GO:0030176;integral to endoplasmic reticulum membrane;0.0104442449701831!GO:0048500;signal recognition particle;0.0104681260742126!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0104681260742126!GO:0000287;magnesium ion binding;0.0105250724815898!GO:0031968;organelle outer membrane;0.0106704864345202!GO:0030127;COPII vesicle coat;0.0109123647480353!GO:0012507;ER to Golgi transport vesicle membrane;0.0109123647480353!GO:0019867;outer membrane;0.0109123647480353!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0112396236466067!GO:0030867;rough endoplasmic reticulum membrane;0.0114720703723269!GO:0031625;ubiquitin protein ligase binding;0.0115254056001654!GO:0046966;thyroid hormone receptor binding;0.0115999663889541!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.0117188627627575!GO:0002819;regulation of adaptive immune response;0.0117188627627575!GO:0030134;ER to Golgi transport vesicle;0.0118327169843286!GO:0006352;transcription initiation;0.0118379827330852!GO:0042802;identical protein binding;0.0123807185333845!GO:0030218;erythrocyte differentiation;0.0130513242210216!GO:0005484;SNAP receptor activity;0.013394623947958!GO:0030029;actin filament-based process;0.0135241836058282!GO:0002467;germinal center formation;0.0137082244914533!GO:0009165;nucleotide biosynthetic process;0.0137146051591097!GO:0002682;regulation of immune system process;0.0139265573713038!GO:0051252;regulation of RNA metabolic process;0.014148745487652!GO:0046649;lymphocyte activation;0.0146779101704889!GO:0002443;leukocyte mediated immunity;0.0146842423604544!GO:0051092;activation of NF-kappaB transcription factor;0.0148932556099727!GO:0019377;glycolipid catabolic process;0.0148975506074443!GO:0002684;positive regulation of immune system process;0.0148975506074443!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0149875237703255!GO:0030027;lamellipodium;0.0155127374543676!GO:0065004;protein-DNA complex assembly;0.0157712902388572!GO:0004177;aminopeptidase activity;0.0157712902388572!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.0158366775509161!GO:0032763;regulation of mast cell cytokine production;0.0161913302691246!GO:0032762;mast cell cytokine production;0.0161913302691246!GO:0030384;phosphoinositide metabolic process;0.0164271886183421!GO:0030224;monocyte differentiation;0.0164641422315542!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.016536582695513!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0170624925238128!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0170839947898665!GO:0045047;protein targeting to ER;0.0170839947898665!GO:0019883;antigen processing and presentation of endogenous antigen;0.0172544365825639!GO:0030658;transport vesicle membrane;0.0177925398424153!GO:0030518;steroid hormone receptor signaling pathway;0.018093169758599!GO:0051098;regulation of binding;0.0183013597861086!GO:0030258;lipid modification;0.0187385271902189!GO:0051085;chaperone cofactor-dependent protein folding;0.0189620269261977!GO:0046979;TAP2 binding;0.0189620269261977!GO:0046977;TAP binding;0.0189620269261977!GO:0046978;TAP1 binding;0.0189620269261977!GO:0019318;hexose metabolic process;0.0194183594303513!GO:0048002;antigen processing and presentation of peptide antigen;0.0195808408398199!GO:0048471;perinuclear region of cytoplasm;0.0196432276251634!GO:0008624;induction of apoptosis by extracellular signals;0.0197328907916745!GO:0051059;NF-kappaB binding;0.0201052633797136!GO:0001819;positive regulation of cytokine production;0.020185046151215!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0206935304880353!GO:0006650;glycerophospholipid metabolic process;0.0207966753994328!GO:0050778;positive regulation of immune response;0.0208410413545407!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0209161081588403!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0210226833750033!GO:0000209;protein polyubiquitination;0.0213405263807688!GO:0019904;protein domain specific binding;0.0217043256303!GO:0006611;protein export from nucleus;0.0217433017541919!GO:0002224;toll-like receptor signaling pathway;0.021883613188037!GO:0002221;pattern recognition receptor signaling pathway;0.021883613188037!GO:0002253;activation of immune response;0.0219074144139617!GO:0005815;microtubule organizing center;0.0219235070746098!GO:0008637;apoptotic mitochondrial changes;0.0220889673419525!GO:0017091;AU-rich element binding;0.0221454767846362!GO:0050779;RNA destabilization;0.0221454767846362!GO:0000289;poly(A) tail shortening;0.0221454767846362!GO:0003702;RNA polymerase II transcription factor activity;0.0225973813478203!GO:0008139;nuclear localization sequence binding;0.022883152350608!GO:0019882;antigen processing and presentation;0.022883152350608!GO:0015923;mannosidase activity;0.022883152350608!GO:0050811;GABA receptor binding;0.022883152350608!GO:0033367;protein localization in mast cell secretory granule;0.022883152350608!GO:0033365;protein localization in organelle;0.022883152350608!GO:0033371;T cell secretory granule organization and biogenesis;0.022883152350608!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.022883152350608!GO:0033375;protease localization in T cell secretory granule;0.022883152350608!GO:0042629;mast cell granule;0.022883152350608!GO:0033377;maintenance of protein localization in T cell secretory granule;0.022883152350608!GO:0033364;mast cell secretory granule organization and biogenesis;0.022883152350608!GO:0033380;granzyme B localization in T cell secretory granule;0.022883152350608!GO:0033379;maintenance of protease localization in T cell secretory granule;0.022883152350608!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.022883152350608!GO:0033368;protease localization in mast cell secretory granule;0.022883152350608!GO:0033366;protein localization in secretory granule;0.022883152350608!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.022883152350608!GO:0033374;protein localization in T cell secretory granule;0.022883152350608!GO:0006405;RNA export from nucleus;0.0229238033529648!GO:0015631;tubulin binding;0.0230312332078238!GO:0005048;signal sequence binding;0.0230531905882948!GO:0001775;cell activation;0.0231175566811985!GO:0019210;kinase inhibitor activity;0.0231340196884336!GO:0046466;membrane lipid catabolic process;0.0232121203523816!GO:0016791;phosphoric monoester hydrolase activity;0.0232137914241494!GO:0004860;protein kinase inhibitor activity;0.0234360991589365!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0236142891123092!GO:0000049;tRNA binding;0.023635016951491!GO:0006516;glycoprotein catabolic process;0.023864691940667!GO:0030137;COPI-coated vesicle;0.0240155709334165!GO:0005996;monosaccharide metabolic process;0.02409575008533!GO:0030663;COPI coated vesicle membrane;0.02409575008533!GO:0030126;COPI vesicle coat;0.02409575008533!GO:0033673;negative regulation of kinase activity;0.0247575452816322!GO:0006469;negative regulation of protein kinase activity;0.0247575452816322!GO:0046578;regulation of Ras protein signal transduction;0.0257143707952585!GO:0046467;membrane lipid biosynthetic process;0.0258583975650907!GO:0019783;small conjugating protein-specific protease activity;0.0264525424066409!GO:0017166;vinculin binding;0.0267892066945603!GO:0008312;7S RNA binding;0.0268085998927927!GO:0002697;regulation of immune effector process;0.0269394238267766!GO:0043300;regulation of leukocyte degranulation;0.0270294829873217!GO:0051345;positive regulation of hydrolase activity;0.0270294829873217!GO:0002237;response to molecule of bacterial origin;0.0270762470526722!GO:0050851;antigen receptor-mediated signaling pathway;0.0270762470526722!GO:0030133;transport vesicle;0.0277763786551413!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0278374409982618!GO:0015036;disulfide oxidoreductase activity;0.0284269651427174!GO:0050900;leukocyte migration;0.0286982746878205!GO:0045113;regulation of integrin biosynthetic process;0.0290146228083979!GO:0045112;integrin biosynthetic process;0.0290146228083979!GO:0050776;regulation of immune response;0.0293300105402377!GO:0003727;single-stranded RNA binding;0.0293300105402377!GO:0030433;ER-associated protein catabolic process;0.0295582569957876!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0295582569957876!GO:0002444;myeloid leukocyte mediated immunity;0.0299910570577249!GO:0051101;regulation of DNA binding;0.0300431780073796!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0303257205688684!GO:0051247;positive regulation of protein metabolic process;0.0304904428785393!GO:0045792;negative regulation of cell size;0.0306225934689861!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0307486744062687!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0307486744062687!GO:0051091;positive regulation of transcription factor activity;0.0307953185809446!GO:0004843;ubiquitin-specific protease activity;0.0319118600134073!GO:0051348;negative regulation of transferase activity;0.0319118600134073!GO:0046426;negative regulation of JAK-STAT cascade;0.0319118600134073!GO:0007162;negative regulation of cell adhesion;0.0319118600134073!GO:0043488;regulation of mRNA stability;0.0319118600134073!GO:0043487;regulation of RNA stability;0.0319118600134073!GO:0005669;transcription factor TFIID complex;0.0319118600134073!GO:0006665;sphingolipid metabolic process;0.0321881219492367!GO:0005070;SH3/SH2 adaptor activity;0.0325355659902295!GO:0042613;MHC class II protein complex;0.0325355659902295!GO:0005905;coated pit;0.0327885161941041!GO:0032760;positive regulation of tumor necrosis factor production;0.0330961927280221!GO:0019079;viral genome replication;0.0332342695198491!GO:0002718;regulation of cytokine production during immune response;0.0332942179876137!GO:0002367;cytokine production during immune response;0.0332942179876137!GO:0002700;regulation of production of molecular mediator of immune response;0.0332942179876137!GO:0043621;protein self-association;0.0332942179876137!GO:0008629;induction of apoptosis by intracellular signals;0.033530788793749!GO:0000118;histone deacetylase complex;0.0336480557247175!GO:0046479;glycosphingolipid catabolic process;0.0336480557247175!GO:0006354;RNA elongation;0.0336480557247175!GO:0030660;Golgi-associated vesicle membrane;0.033665535250027!GO:0008286;insulin receptor signaling pathway;0.033763830811705!GO:0030100;regulation of endocytosis;0.0346425017401292!GO:0043022;ribosome binding;0.0347701993820362!GO:0005869;dynactin complex;0.0349222927269725!GO:0030308;negative regulation of cell growth;0.0362415794698184!GO:0005694;chromosome;0.0365566884967065!GO:0006007;glucose catabolic process;0.0366948799119989!GO:0003711;transcription elongation regulator activity;0.0367908104124883!GO:0006644;phospholipid metabolic process;0.0368302058948386!GO:0005684;U2-dependent spliceosome;0.0371478705475635!GO:0030833;regulation of actin filament polymerization;0.0373309465798154!GO:0033033;negative regulation of myeloid cell apoptosis;0.0373309465798154!GO:0001803;regulation of type III hypersensitivity;0.0373309465798154!GO:0032733;positive regulation of interleukin-10 production;0.0373309465798154!GO:0033025;regulation of mast cell apoptosis;0.0373309465798154!GO:0001805;positive regulation of type III hypersensitivity;0.0373309465798154!GO:0033023;mast cell homeostasis;0.0373309465798154!GO:0002431;Fc receptor mediated stimulatory signaling pathway;0.0373309465798154!GO:0033032;regulation of myeloid cell apoptosis;0.0373309465798154!GO:0001802;type III hypersensitivity;0.0373309465798154!GO:0033028;myeloid cell apoptosis;0.0373309465798154!GO:0042590;antigen processing and presentation of exogenous peptide antigen via MHC class I;0.0373309465798154!GO:0033026;negative regulation of mast cell apoptosis;0.0373309465798154!GO:0033024;mast cell apoptosis;0.0373309465798154!GO:0008656;caspase activator activity;0.0377369071685882!GO:0051540;metal cluster binding;0.0379639308890938!GO:0051536;iron-sulfur cluster binding;0.0379639308890938!GO:0006260;DNA replication;0.0380110239111628!GO:0030521;androgen receptor signaling pathway;0.0382536555545899!GO:0008538;proteasome activator activity;0.0386656628193728!GO:0046483;heterocycle metabolic process;0.0388350850549708!GO:0030118;clathrin coat;0.0390672782356213!GO:0006749;glutathione metabolic process;0.0390678332544545!GO:0002824;positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.04054103561214!GO:0002821;positive regulation of adaptive immune response;0.04054103561214!GO:0008287;protein serine/threonine phosphatase complex;0.0410216918770922!GO:0000785;chromatin;0.041223314179236!GO:0006509;membrane protein ectodomain proteolysis;0.041223314179236!GO:0033619;membrane protein proteolysis;0.041223314179236!GO:0051235;maintenance of localization;0.0414619070511073!GO:0042108;positive regulation of cytokine biosynthetic process;0.0421674488236957!GO:0047485;protein N-terminus binding;0.0426381055543357!GO:0016491;oxidoreductase activity;0.042678653665631!GO:0006376;mRNA splice site selection;0.0429236588868866!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0429236588868866!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0433432042295013!GO:0003746;translation elongation factor activity;0.0437880422211261!GO:0048146;positive regulation of fibroblast proliferation;0.0443793985835411!GO:0000738;DNA catabolic process, exonucleolytic;0.0447159651137797!GO:0000082;G1/S transition of mitotic cell cycle;0.0452749548725858!GO:0006914;autophagy;0.0452749548725858!GO:0019220;regulation of phosphate metabolic process;0.0455450472910882!GO:0051174;regulation of phosphorus metabolic process;0.0455450472910882!GO:0006465;signal peptide processing;0.0455450472910882!GO:0006333;chromatin assembly or disassembly;0.0455450472910882!GO:0030503;regulation of cell redox homeostasis;0.047291635126023!GO:0000339;RNA cap binding;0.047291635126023!GO:0051056;regulation of small GTPase mediated signal transduction;0.0472949191685394!GO:0005975;carbohydrate metabolic process;0.0475658473621752!GO:0051087;chaperone binding;0.0478398011636055!GO:0045309;protein phosphorylated amino acid binding;0.0485124238139036!GO:0051049;regulation of transport;0.0485124238139036!GO:0008361;regulation of cell size;0.0486376782058492!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0487644707821702!GO:0045576;mast cell activation;0.0495485034757039!GO:0019843;rRNA binding;0.0498817289614434
|sample_id=11881
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=
|top_motifs=STAT2,4,6:5.11984081227;STAT1,3:4.46933375631;IRF7:4.19187455534;IRF1,2:3.753367067;STAT5{A,B}:3.20571163191;CEBPA,B_DDIT3:3.11980719592;EP300:2.92177581893;SPIB:2.73823543167;SPI1:2.61376481887;NFE2L2:2.60203836357;NANOG{mouse}:2.5134441175;NFE2:2.45252553549;PAX2:2.40151406391;FOSL2:2.37672951723;ETS1,2:2.19518831452;FOXN1:2.19422831478;SREBF1,2:2.17040548654;DMAP1_NCOR{1,2}_SMARC:2.02779701575;HLF:2.02508426661;FOXP3:1.95452028118;FOS_FOS{B,L1}_JUN{B,D}:1.81605959918;BACH2:1.80442102504;NFIL3:1.76600484738;NR1H4:1.61236023102;ELF1,2,4:1.5940092459;RUNX1..3:1.53444076353;NFKB1_REL_RELA:1.48795537917;ATF5_CREB3:1.48231838419;TLX2:1.44717221104;ATF4:1.39456500693;HMX1:1.36577954282;ATF6:1.33661549607;NR6A1:1.30664693297;HSF1,2:1.23907685764;TGIF1:1.23648042787;HIF1A:1.13638819053;ALX4:1.09857470182;TFCP2:1.03683055928;HBP1_HMGB_SSRP1_UBTF:0.99492090151;PDX1:0.959199394152;NFE2L1:0.953624406924;CREB1:0.858775908333;SPZ1:0.798030278199;BPTF:0.784772604631;ATF2:0.761676862813;ESRRA:0.722392599703;SMAD1..7,9:0.694414071621;MAFB:0.651962371421;HMGA1,2:0.616130821789;ZBTB16:0.604911525452;JUN:0.600675334255;FOX{D1,D2}:0.558578484628;GATA4:0.493895557281;FOX{F1,F2,J1}:0.4049533894;RXRA_VDR{dimer}:0.402319163205;PPARG:0.385942595518;NFATC1..3:0.341533404042;RBPJ:0.312607759161;FOXO1,3,4:0.25933010476;GLI1..3:0.224247079045;RFX2..5_RFXANK_RFXAP:0.200980463989;AHR_ARNT_ARNT2:0.184732254632;EN1,2:0.156595987245;NANOG:0.149867255394;CDX1,2,4:0.142388682476;SRF:0.129656853557;PAX3,7:0.113748500467;XBP1:0.102751571685;PITX1..3:0.101466704497;VSX1,2:0.100805536651;PRDM1:0.0472164493685;IKZF2:-0.0388823809539;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0737912916906;RXR{A,B,G}:-0.0888419727827;MYB:-0.0912909554921;NKX3-2:-0.166409635742;ESR1:-0.197427890544;NFIX:-0.236026946067;MYFfamily:-0.267302914845;TFAP4:-0.305515193925;IKZF1:-0.328490199052;HES1:-0.337741967153;NKX6-1,2:-0.341925862482;FOXP1:-0.365709062843;FOXM1:-0.368903848869;OCT4_SOX2{dimer}:-0.411568325906;HNF4A_NR2F1,2:-0.416136340192;PAX1,9:-0.417664364139;ZNF238:-0.46484664159;TBP:-0.473888541555;REST:-0.511370186738;POU1F1:-0.524737360013;EGR1..3:-0.527619709755;HOX{A6,A7,B6,B7}:-0.530937904091;MZF1:-0.549544382772;MEF2{A,B,C,D}:-0.593009208664;PATZ1:-0.602313393229;PAX8:-0.606192109732;FOXD3:-0.622928378184;POU5F1:-0.663317625432;SOX2:-0.678927758186;TAL1_TCF{3,4,12}:-0.687383306047;NHLH1,2:-0.700355695995;FOXA2:-0.709573417798;TFAP2{A,C}:-0.716221656273;PRRX1,2:-0.741628157128;HOX{A5,B5}:-0.757327987361;MED-1{core}:-0.773636397934;HNF1A:-0.775280932958;PAX4:-0.813481086352;RREB1:-0.815038627607;ZNF148:-0.820011632364;ALX1:-0.825910515079;GATA6:-0.844200730734;CUX2:-0.844470068139;RFX1:-0.847812457197;POU2F1..3:-0.8794506669;MYOD1:-0.892500433011;POU6F1:-0.921798822496;TFAP2B:-0.995923144099;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01260495355;TOPORS:-1.01847583709;NKX3-1:-1.02989063977;FOXL1:-1.03894744975;RORA:-1.06330727051;MTE{core}:-1.06602501991;SP1:-1.07310834692;NKX2-2,8:-1.09733109661;FOX{I1,J2}:-1.12818731374;TP53:-1.14047670604;MTF1:-1.14064499766;NR3C1:-1.15253760178;EBF1:-1.17791619046;MAZ:-1.17857715217;ZFP161:-1.19921116312;LMO2:-1.20917664664;MYBL2:-1.21855543128;ZBTB6:-1.22740589911;DBP:-1.22830893107;FOXQ1:-1.23986962275;SOX5:-1.24945202726;BREu{core}:-1.27085875759;PAX6:-1.28148618516;ZEB1:-1.29047442477;CRX:-1.32663908828;GTF2I:-1.33530789305;HOXA9_MEIS1:-1.33771337062;TEF:-1.350947929;GZF1:-1.35769839878;GCM1,2:-1.36678623815;KLF4:-1.38255225422;UFEwm:-1.38869945515;TBX4,5:-1.39805612943;XCPE1{core}:-1.40561884896;NKX2-3_NKX2-5:-1.41607365449;SNAI1..3:-1.42548186216;TLX1..3_NFIC{dimer}:-1.42830895858;GTF2A1,2:-1.45376541666;AIRE:-1.5159143334;TEAD1:-1.53364436257;E2F1..5:-1.54179016221;PAX5:-1.56236869029;TFDP1:-1.5709267597;ZIC1..3:-1.59607272448;ELK1,4_GABP{A,B1}:-1.60198189874;NR5A1,2:-1.65090567805;HAND1,2:-1.67172663285;HIC1:-1.67278614722;YY1:-1.73340872247;EVI1:-1.73353819749;SOX{8,9,10}:-1.73740659586;CDC5L:-1.84244406019;AR:-1.92992649852;NKX2-1,4:-1.95936928631;T:-1.96451154925;ONECUT1,2:-1.9826533829;bHLH_family:-1.98296191908;GFI1B:-1.98497963519;ADNP_IRX_SIX_ZHX:-2.0459249386;ZNF384:-2.05030329197;HOX{A4,D4}:-2.07756429774;ZNF423:-2.09421362714;NFY{A,B,C}:-2.24926668234;GFI1:-2.26652769318;NRF1:-2.35487193675;SOX17:-2.41418372761;POU3F1..4:-2.59000270507;LEF1_TCF7_TCF7L1,2:-2.72512046823;LHX3,4:-2.85962971112;PBX1:-2.87344375237;ZNF143:-2.8797071253;ARID5B:-3.14837698233
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11881-125C9;search_select_hide=table117:FF:11881-125C9
}}
}}

Latest revision as of 18:26, 4 June 2020

Name:CD14+ monocytes - treated with IFN + N-hexane, donor3
Species:Human (Homo sapiens)
Library ID:CNhs13490
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexfemale
age21
cell typemonocyte
cell lineNA
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberD5-2
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005007
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13490 CAGE DRX008152 DRR009024
Accession ID Hg19

Library idBAMCTSS
CNhs13490 DRZ000449 DRZ001834
Accession ID Hg38

Library idBAMCTSS
CNhs13490 DRZ011799 DRZ013184
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.154
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.1
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.543
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.47
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0109
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.154
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.755
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0313
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.281
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.154
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.443
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.405
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.843
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.12
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.268
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.231
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.154
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0901
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0.358
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.993
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0.358
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.865
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.551
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.551
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.867
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.366
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.154
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.388
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.496
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0.644
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.268
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.709
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.605
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.154
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.816
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.429
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.154
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.6
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.432
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.154
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.738
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0.644
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.154
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.154
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.268
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.268
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13490

Jaspar motifP-value
MA0002.22.50005e-8
MA0003.10.317
MA0004.10.551
MA0006.10.953
MA0007.10.735
MA0009.10.373
MA0014.10.649
MA0017.10.0229
MA0018.20.487
MA0019.10.738
MA0024.10.00162
MA0025.10.022
MA0027.10.93
MA0028.10.154
MA0029.10.296
MA0030.10.445
MA0031.10.837
MA0035.20.341
MA0038.10.047
MA0039.20.994
MA0040.10.107
MA0041.10.98
MA0042.10.806
MA0043.10.00112
MA0046.10.174
MA0047.20.592
MA0048.10.965
MA0050.18.46872e-25
MA0051.15.2167e-16
MA0052.10.451
MA0055.10.508
MA0057.10.901
MA0058.10.35
MA0059.10.492
MA0060.12.46421e-11
MA0061.12.7522e-6
MA0062.20.344
MA0065.20.00727
MA0066.10.0784
MA0067.12.55508e-4
MA0068.10.581
MA0069.10.527
MA0070.10.00211
MA0071.10.396
MA0072.10.834
MA0073.10.391
MA0074.10.256
MA0076.10.185
MA0077.10.171
MA0078.10.503
MA0079.20.617
MA0080.27.8663e-15
MA0081.12.55599e-4
MA0083.10.479
MA0084.10.914
MA0087.10.855
MA0088.10.558
MA0090.10.122
MA0091.10.466
MA0092.10.186
MA0093.10.622
MA0099.22.63568e-32
MA0100.10.778
MA0101.14.83733e-5
MA0102.29.51198e-9
MA0103.10.39
MA0104.20.981
MA0105.12.44481e-8
MA0106.10.741
MA0107.11.64107e-6
MA0108.20.0323
MA0111.10.455
MA0112.28.34784e-5
MA0113.10.538
MA0114.10.158
MA0115.10.839
MA0116.12.66716e-4
MA0117.10.224
MA0119.10.358
MA0122.10.684
MA0124.10.872
MA0125.10.442
MA0131.10.351
MA0135.10.981
MA0136.14.49022e-15
MA0137.21.02123e-18
MA0138.20.888
MA0139.10.917
MA0140.10.278
MA0141.10.0885
MA0142.10.577
MA0143.10.59
MA0144.13.47101e-7
MA0145.10.229
MA0146.10.0821
MA0147.10.941
MA0148.10.77
MA0149.10.299
MA0150.12.27683e-14
MA0152.10.94
MA0153.10.0345
MA0154.10.00232
MA0155.10.829
MA0156.15.55096e-10
MA0157.10.507
MA0159.10.0169
MA0160.10.0279
MA0162.10.944
MA0163.11.05913e-6
MA0164.10.83
MA0258.10.00209
MA0259.10.543



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13490

Novel motifP-value
10.112
100.0238
1000.813
1010.845
1020.586
1030.244
1040.622
1050.269
1063.16887e-4
1070.218
1080.992
1090.191
110.14
1100.177
1110.0717
1120.327
1130.53
1140.00884
1150.18
1160.865
1170.0808
1180.22
1190.153
120.415
1200.477
1210.586
1220.552
1230.196
1240.792
1250.507
1260.297
1270.31
1280.0324
1290.426
130.171
1300.143
1310.411
1320.113
1330.908
1340.469
1350.406
1360.913
1370.0135
1380.134
1390.0663
140.442
1400.311
1410.192
1420.298
1430.0432
1440.797
1450.504
1460.702
1470.417
1480.0127
1490.768
150.144
1500.453
1510.256
1520.0973
1530.664
1540.479
1550.747
1560.53
1570.61
1580.0981
1590.808
160.34
1600.46
1610.499
1620.308
1630.287
1640.207
1650.0618
1660.63
1670.291
1680.223
1690.00743
170.23
180.178
190.265
20.92
200.389
210.396
220.197
230.031
240.224
250.354
260.0649
270.805
280.476
290.304
30.084
300.617
310.846
320.8
330.347
340.497
350.192
360.134
370.0687
380.467
390.786
40.894
400.247
410.0499
420.356
430.0392
440.655
450.771
460.162
470.449
480.42
490.123
50.175
500.95
510.343
520.245
530.352
540.283
550.358
560.685
570.844
580.11
590.183
60.716
600.0249
610.65
620.0354
630.442
640.489
650.237
660.267
670.478
680.825
690.605
70.304
700.0187
710.0517
720.115
730.105
740.125
750.114
760.382
770.401
780.105
790.0563
80.387
800.147
810.328
820.105
830.394
840.43
850.0171
860.0357
870.496
880.529
890.294
90.275
900.0783
910.333
920.175
930.176
940.049
950.455
960.318
970.768
980.075
990.122



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13490


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000629 (IFN and N-hexane treatment sample)
0011443 (CD14-positive monocytes - treated with IFN + N-hexane sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

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