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(Created page with "{{f5samples |id=FF:10164-103B2 |name=caudate nucleus, adult, donor10252 |sample_id=10164 |rna_tube_id=103B2 |rna_box=103 |rna_position=B2 |sample_cell_lot=NA |sample_c...")
 
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{{f5samples
{{f5samples
|id=FF:10164-103B2
|DRA_sample_Accession=CAGE@SAMD00005372
|name=caudate nucleus, adult, donor10252
|HumanCAGEScanFiles=NCig10035;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.NCig10035.10164-103B2.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.NCig10035.10164-103B2.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.NCig10035.10164-103B2.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.NCig10035.10164-103B2.hg19.GCTATA.pairs.bed.gz
|sample_id=10164
|accession_numbers=CAGE;DRX008630;DRR009502;DRZ000927;DRZ002312;DRZ012277;DRZ013662
|rna_tube_id=103B2
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001873,UBERON:0000369,UBERON:0002435,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0000125,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0005383,UBERON:0010011,UBERON:0000204,UBERON:0005382,UBERON:0000454
|rna_box=103
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|rna_position=B2
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=caudate nucleus
|sample_donor(cell lot)=donor: 10252
|sample_sex=female
|sample_age=76
|sample_ethnicity=
|rna_rin=
|rna_od260/230=2.21000
|rna_od260/280=1.96000
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=Peter Heutink
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=34.25775
|rna_concentration=
|sample_note=
|profile_hcage=CNhs12321,LSID913,release011,COMPLETED
|profile_cagescan=NCig10035,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000073,UBERON:0000125,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000955,UBERON:0001016,UBERON:0001017,UBERON:0001049,UBERON:0001062,UBERON:0001869,UBERON:0001873,UBERON:0001890,UBERON:0001893,UBERON:0002020,UBERON:0002050,UBERON:0002308,UBERON:0002346,UBERON:0002420,UBERON:0002435,UBERON:0002532,UBERON:0002616,UBERON:0002780,UBERON:0002791,UBERON:0003056,UBERON:0003075,UBERON:0003080,UBERON:0003528,UBERON:0004121,UBERON:0005068,UBERON:0005291,UBERON:0005382,UBERON:0005383,UBERON:0005423,UBERON:0005743,UBERON:0006598,UBERON:0007023,UBERON:0007135,UBERON:0007284
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010164
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.49!310.54!PEG3;;chr7:100065686..100065701,-!p2@TSC22D4!2.47!291.60!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.17!146.40!OLIG1;;chr3:181429704..181429722,+!p1@SOX2!2.00!99.25!SOX2;;chr22:38380543..38380569,-!p1@SOX10!1.98!94.31!SOX10;;chrX:82763292..82763317,+!p1@POU3F4!1.84!68.26!POU3F4;;chr9:114287433..114287513,+!p1@ZNF483!1.81!157.86!ZNF483;;chr15:80735246..80735321,+!p3@ARNT2!1.80!61.38!ARNT2;;chr17:53342311..53342400,+!p1@HLF!1.76!65.00!HLF;;chr15:80733570..80733659,+!p2@ARNT2!1.74!53.54!ARNT2;;chr14:29235961..29236008,+!p1@FOXG1!1.74!53.54!FOXG1;;chr2:166326200..166326216,+!p1@CSRNP3!1.68!67.41!CSRNP3;;chr8:40755333..40755352,-!p1@ZMAT4!1.67!45.46!ZMAT4;;chr21:34398234..34398250,+!p1@OLIG2!1.62!41.00!OLIG2;;chr12:54779511..54779577,-!p5@ZNF385A!1.62!40.40!ZNF385A;;chr12:106976678..106976708,+!p2@RFX4!1.60!38.95!RFX4;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.59!37.99!SMARCE1;;chr16:1031762..1031781,+!p1@SOX8!1.59!37.87!SOX8;;chr12:26277817..26277863,-!p2@BHLHE41!1.58!50.05!BHLHE41;;chr3:181429741..181429767,+!p2@SOX2!1.58!37.26!SOX2;;chr17:38219209..38219230,+!p1@THRA!1.57!444.28!THRA;;chr2:60781201..60781258,-!p3@BCL11A!1.56!34.97!BCL11A;;chr11:61520075..61520136,+!p1@C11orf9!1.55!71.03!C11orf9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.55!34.73!POU3F3;;chr19:46801639..46801699,+!p1@HIF3A!1.55!34.37!HIF3A;;chr6:19837592..19837621,+!p1@ID4!1.49!177.28!ID4;;chr18:55102598..55102623,+!p1@ONECUT2!1.49!30.15!ONECUT2;;chr14:29234581..29234601,+!p2@FOXG1!1.46!28.10!FOXG1;;chr13:72441315..72441454,-!p1@DACH1!1.44!51.74!DACH1;;chr9:77112244..77112262,+!p1@RORB!1.43!29.06!RORB;;chr2:2334997..2335053,-!p1@MYT1L!1.42!25.20!MYT1L;;chrX:85969626..85969664,+!p1@DACH2!1.41!24.72!DACH2;;chr15:80696703..80696754,+!p1@ARNT2!1.39!31.36!ARNT2;;chr21:34442540..34442560,+!p2@OLIG1!1.39!23.28!OLIG1;;chr2:145277882..145277967,-!p3@ZEB2!1.37!38.23!ZEB2;;chr14:33403881..33403924,+!p1@NPAS3!1.36!21.83!NPAS3;;chr12:26277956..26277980,-!p1@BHLHE41!1.35!75.73!BHLHE41;;chr17:7492684..7492778,-!p2@SOX15!1.34!43.05!SOX15;;chr16:85932760..85932775,+!p1@IRF8!1.34!21.10!IRF8;;chr22:41763274..41763318,+!p3@TEF!1.34!20.74!TEF;;chr17:70117153..70117174,+!p1@SOX9!1.33!204.77!SOX9;;chr3:126076242..126076257,-!p1@KLF15!1.32!24.84!KLF15;;chr12:106976774..106976788,+!p1@RFX4!1.32!19.78!RFX4;;chr11:47400078..47400106,-!p1@SPI1!1.32!19.66!SPI1;;chr19:46800289..46800327,+!p2@HIF3A!1.32!19.66!HIF3A;;chr2:45168875..45168916,+!p1@SIX3!1.31!19.42!SIX3;;chr8:53322304..53322340,-!p1@ST18!1.30!19.17!ST18;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.30!19.17!ZBED1;;chr14:29236269..29236285,+!p3@FOXG1!1.30!18.81!FOXG1;;chr2:2328299..2328363,-!p3@MYT1L!1.28!18.21!MYT1L;;chr15:31658288..31658338,+!p4@KLF13!1.28!18.21!KLF13;;chr9:126774018..126774055,+!p1@LHX2!1.28!18.21!LHX2;;chr2:95963052..95963106,+!p1@KCNIP3!1.28!17.85!KCNIP3;;chr3:25469724..25469773,+!p1@RARB!1.26!24.60!RARB;;chr10:64134120..64134183,+!p1@ZNF365!1.26!20.86!ZNF365;;chr7:96654133..96654150,-!p1@DLX5!1.26!17.12!DLX5;;chrX:82763265..82763283,+!p2@POU3F4!1.26!17.00!POU3F4;;chrX:25034067..25034088,-!p1@ARX!1.25!16.76!ARX;;chr2:73520667..73520683,-!p1@EGR4!1.25!16.76!EGR4;;chr18:55102628..55102646,+!p2@ONECUT2!1.25!16.64!ONECUT2;;chr3:114173720..114173794,-!p6@ZBTB20!1.24!16.28!ZBTB20;;chr7:63505799..63505904,+!p1@ZNF727!1.23!15.92!ZNF727;;chr4:57547751..57547764,-!p6@HOPX!1.23!15.80!HOPX;;chr11:113930425..113930471,+!p1@ZBTB16!1.22!22.31!ZBTB16;;chr11:31832862..31832884,-!p2@PAX6!1.22!15.68!PAX6;;chr19:57352109..57352153,-!p2@ZIM2!1.21!15.20!ZIM2;;chr10:134599649..134599653,-!p1@NKX6-2!1.19!14.59!NKX6-2;;chr2:2330039..2330072,-!p6@MYT1L!1.19!14.47!MYT1L;;chr19:38085768..38085821,+!p1@ZNF540!1.18!21.10!ZNF540;;chr6:108487289..108487302,+!p1@NR2E1!1.18!14.11!NR2E1;;chr7:150974206..150974255,-!p1@SMARCD3!1.17!84.66!SMARCD3;;chr1:61548069..61548102,+!p3@NFIA!1.17!33.41!NFIA;;chr8:80679993..80680011,-!p1@HEY1!1.17!19.78!HEY1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.17!13.87!RUNX1T1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.17!13.75!POU3F3;;chr14:58797974..58798011,+!p3@ARID4A!1.16!13.39!ARID4A;;chr3:114819124..114819200,-!p3@ZBTB20!1.15!30.51!ZBTB20;;chr17:38219143..38219154,+!p2@THRA!1.14!45.71!THRA;;chr17:38219184..38219195,+!p3@THRA!1.14!25.81!THRA;;chr11:8102846..8102892,+!p1@TUB!1.14!18.09!TUB;;chr19:53193731..53193767,-!p1@ZNF83!1.13!110.83!ZNF83;;chr4:57522166..57522260,-!p2@HOPX!1.13!14.47!HOPX;;chr17:74137321..74137337,-!p1@FOXJ1!1.13!12.42!FOXJ1;;chr14:33403648..33403710,+!p3@NPAS3!1.12!12.30!NPAS3;;chr2:45168834..45168847,+!p2@SIX3!1.12!12.30!SIX3;;chr2:45168997..45169020,+!p4@SIX3!1.11!11.94!SIX3;;chr16:67197654..67197716,+!p3@HSF4!1.11!11.94!HSF4;;chr3:126076264..126076305,-!p2@KLF15!1.10!16.28!KLF15;;chr15:37392534..37392562,-!p10@MEIS2!1.10!12.66!MEIS2;;chr15:61521417..61521460,-!p2@RORA!1.09!25.20!RORA;;chr8:53322347..53322378,-!p2@ST18!1.09!11.22!ST18;;chr9:3525867..3525902,-!p3@RFX3!1.08!38.35!RFX3;;chr8:30890810..30890880,-!p1@PURG!1.08!11.09!PURG;;chr10:119302232..119302265,+!p1@EMX2!1.08!10.97!EMX2;;chr14:21994337..21994442,-!p1@SALL2!1.07!29.67!SALL2;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.07!23.03!ZNF395;;chr8:93074848..93074871,-!p3@RUNX1T1!1.07!10.73!RUNX1T1;;chr2:42721205..42721307,+!p4@MTA3!1.07!10.73!MTA3;;chr1:8585945..8586056,-!p3@RERE!1.06!35.21!RERE;;chr8:22550530..22550609,-!p2@EGR3!1.05!10.25!EGR3;;chr1:2461692..2461710,-!p1@HES5!1.04!10.01!HES5;;chr3:141105235..141105307,+!p7@ZBTB38!1.04!9.89!ZBTB38;;chr11:125034640..125034655,+!p1@PKNOX2!1.04!9.89!PKNOX2;;chr3:33482052..33482116,-!p2@UBP1!1.03!14.95!UBP1;;chr6:126112039..126112062,+!p8@NCOA7!1.03!11.82!NCOA7;;chr13:72441074..72441172,-!p2@DACH1!1.03!9.65!DACH1;;chr13:73633131..73633149,+!p1@KLF5!1.02!103.35!KLF5;;chr2:2328095..2328125,-!p7@MYT1L!1.02!9.53!MYT1L;;chr1:40105299..40105326,-!p1@HEYL!1.02!9.53!HEYL;;chr15:80696666..80696700,+!p4@ARNT2!1.02!9.53!ARNT2;;chr6:126070769..126070801,+!p1@HEY2!1.01!10.61!HEY2;;chr8:80680024..80680046,-!p2@HEY1!1.01!10.49!HEY1;;chr10:48355030..48355090,+!p1@ZNF488!1.00!11.70!ZNF488;;chr3:147127142..147127168,+!p1@ZIC1!1.00!8.92!ZIC1;;chr19:38720294..38720348,-!p1@DPF1!0.99!11.09!DPF1;;chr14:33408072..33408114,+!p2@NPAS3!0.99!10.49!NPAS3;;chr5:71803177..71803255,-!p1@ZNF366!0.99!8.68!ZNF366;;chr5:178368186..178368238,+!p1@ZNF454!0.98!15.56!ZNF454;;chr19:38042240..38042309,+!p2@ZNF540!0.98!13.27!ZNF540;;chr12:24715376..24715432,-!p1@SOX5!0.98!10.97!SOX5;;chr15:37392576..37392589,-!p12@MEIS2!0.98!10.49!MEIS2;;chr19:58545454..58545498,+!p1@ZSCAN1!0.98!8.44!ZSCAN1;;chr2:42721689..42721723,+!p6@MTA3!0.98!8.44!MTA3;;chr22:41777927..41777971,+!p1@TEF!0.97!72.00!TEF;;chr17:38256822..38256851,-!p1@NR1D1!0.97!67.17!NR1D1;;chr19:20748574..20748599,-!p1@ZNF737!0.97!51.37!ZNF737;;chr20:62680984..62680999,-!p1@SOX18!0.97!11.22!SOX18;;chr21:39870339..39870443,-!p1@ERG!0.97!8.32!ERG;;chr3:187463179..187463201,-!p2@BCL6!0.96!34.25!BCL6;;chr11:31832658..31832681,-!p1@PAX6!0.96!8.20!PAX6;;chr14:22005197..22005261,-!p3@SALL2!0.96!8.20!SALL2;;chr16:51185318..51185348,-!p2@SALL1!0.96!8.08!SALL1;;chr7:113726357..113726443,+!p1@FOXP2!0.95!13.75!FOXP2;;chr19:49139477..49139552,-!p4@DBP!0.95!10.13!DBP;;chr18:6414884..6414942,-!p1@L3MBTL4!0.95!10.01!L3MBTL4;;chr4:57547454..57547469,-!p1@HOPX!0.95!7.96!HOPX;;chr22:41763452..41763466,+!p2@TEF!0.95!7.84!TEF;;chr7:64337960..64337986,+!p6@ZNF273!0.95!7.84!ZNF273;;chr12:24102576..24102623,-!p2@SOX5!0.95!7.84!SOX5;;chr8:77593474..77593612,+!p1@ZFHX4!0.94!33.53!ZFHX4;;chr2:192015750..192015793,-!p2@STAT4!0.94!10.49!STAT4;;chr2:113057415..113057477,+!p3@ZC3H6!0.94!10.13!ZC3H6;;chr20:45142154..45142227,-!p1@ZNF334!0.93!15.20!ZNF334;;chr15:57511609..57511651,+!p2@TCF12!0.93!12.78!TCF12;;chr12:54785074..54785122,-!p2@ZNF385A!0.93!11.82!ZNF385A;;chr1:38512457..38512474,-!p1@POU3F1!0.93!8.20!POU3F1;;chr16:8963020..8963054,-!p6@CARHSP1!0.93!7.60!CARHSP1;;chr16:67197776..67197831,+!p4@HSF4!0.92!7.36!HSF4;;chr7:64337988..64338010,+!p8@ZNF273!0.92!7.36!ZNF273;;chr9:126774058..126774081,+!p3@LHX2!0.92!7.36!LHX2;;chr2:175199675..175199688,+!p1@SP9!0.92!7.36!SP9;;chr3:114173859..114173873,-!p15@ZBTB20!0.92!7.36!ZBTB20;;chr7:96634878..96634900,+!p2@DLX6!0.92!7.24!DLX6;;chr12:26277929..26277955,-!p3@BHLHE41!0.91!10.25!BHLHE41;;chr11:125034605..125034636,+!p2@PKNOX2!0.91!7.12!PKNOX2;;chr12:103351444..103351461,+!p1@ASCL1!0.91!7.12!ASCL1;;chr14:58798013..58798071,+!p2@ARID4A!0.91!7.12!ARID4A;;chr6:15401104..15401166,+!p5@JARID2!0.91!7.12!JARID2;;chr2:45169193..45169219,+!p3@SIX3!0.91!7.12!SIX3;;chr15:61521462..61521482,-!p4@RORA!0.91!7.12!RORA;;chr16:67198633..67198671,+!p1@HSF4!0.91!7.12!HSF4;;chr9:3525727..3525828,-!p2@RFX3!0.90!18.45!RFX3;;chr15:37391271..37391376,-!p5@MEIS2!0.90!13.39!MEIS2;;chr19:57019215..57019250,+!p1@ZNF471!0.90!10.61!ZNF471;;chr1:214161272..214161322,+!p1@PROX1!0.90!9.89!PROX1;;chr19:37998036..37998098,+!p2@ZNF793!0.90!8.80!ZNF793;;chr2:45168959..45168990,+!p6@SIX3!0.90!6.99!SIX3;;chr7:73038839..73038862,-!p1@MLXIPL!0.90!6.87!MLXIPL;;chr13:45010939..45011033,-!p1@TSC22D1!0.89!471.29!TSC22D1;;chr7:64023441..64023462,-!p1@ZNF680!0.89!56.56!ZNF680;;chr9:3525910..3525955,-!p4@RFX3!0.89!21.22!RFX3;;chrX:106959661..106959763,-!p4@TSC22D3!0.89!20.62!TSC22D3;;chrX:118739835..118739862,-!p1@NKRF!0.89!7.48!NKRF;;chr11:85393886..85393913,-!p3@CREBZF!0.89!6.75!CREBZF;;chr15:80696410..80696477,+!p6@ARNT2!0.89!6.75!ARNT2;;chr19:13135386..13135435,+!p4@NFIX!0.89!6.75!NFIX;;chr7:50344289..50344323,+!p1@IKZF1!0.89!6.75!IKZF1;;chr7:96635448..96635470,+!p5@DLX6!0.89!6.75!DLX6;;chr20:3388541..3388575,-!p2@C20orf194!0.88!27.13!C20orf194;;chr16:79634624..79634642,-!p1@MAF!0.88!26.89!MAF;;chr2:60780607..60780624,-!p2@BCL11A!0.88!20.98!BCL11A;;chrX:70315688..70315709,+!p1@FOXO4!0.88!15.92!FOXO4;;chr7:64023410..64023428,-!p2@ZNF680!0.88!10.61!ZNF680;;chr15:37390482..37390572,-!p7@MEIS2!0.88!9.29!MEIS2;;chr15:37392593..37392607,-!p13@MEIS2!0.88!8.08!M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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000454;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001873;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002308;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002435;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005382;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009663
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010122,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 42:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.CNhs12321.10164-103B2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.CNhs12321.10164-103B2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.CNhs12321.10164-103B2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.CNhs12321.10164-103B2.hg38.nobarcode.ctss.bed.gz
|id=FF:10164-103B2
|is_a=EFO:0002091;;FF:0000002;;FF:0010164
|is_obsolete=
|library_id=CNhs12321
|library_id_phase_based=2:CNhs12321
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10164
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10164
|name=caudate nucleus, adult, donor10252
|namespace=FANTOM5
|part_of=
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|profile_hcage=CNhs12321,LSID913,release011,COMPLETED
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|rna_box=103
|rna_catalog_number=
|rna_concentration=0.45677
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.21
|rna_od260/280=1.96
|rna_position=B2
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=103B2
|rna_weight_ug=34.25775
|sample_age=76
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=Peter Heutink
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=donor: 10252
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.96527265977676e-268!GO:0005737;cytoplasm;3.48143081146882e-157!GO:0043226;organelle;5.59466328844819e-105!GO:0043229;intracellular organelle;2.19097773941664e-104!GO:0044444;cytoplasmic part;1.33927435065408e-99!GO:0043227;membrane-bound organelle;2.66563622024447e-98!GO:0043231;intracellular membrane-bound organelle;5.0735964660083e-98!GO:0005515;protein binding;1.25941401054119e-70!GO:0044422;organelle part;2.13810554182832e-67!GO:0044446;intracellular organelle part;2.60518064889949e-66!GO:0032991;macromolecular complex;4.39279397446725e-63!GO:0016043;cellular component organization and biogenesis;1.92680725239599e-47!GO:0030529;ribonucleoprotein complex;8.51012613622417e-44!GO:0005739;mitochondrion;1.96658249404772e-43!GO:0003723;RNA binding;3.41972442407115e-40!GO:0033036;macromolecule localization;1.12036035464509e-36!GO:0015031;protein transport;1.59920462245065e-35!GO:0031090;organelle membrane;2.68045624665967e-35!GO:0043234;protein complex;1.14723043945767e-34!GO:0043233;organelle lumen;7.90316347911682e-34!GO:0031974;membrane-enclosed lumen;7.90316347911682e-34!GO:0008104;protein localization;4.14162737335508e-33!GO:0045184;establishment of protein localization;7.62976044708638e-33!GO:0044428;nuclear part;7.05544021932164e-32!GO:0044429;mitochondrial part;5.10782930188473e-31!GO:0046907;intracellular transport;8.8134291288118e-31!GO:0044238;primary metabolic process;8.24078478355384e-29!GO:0051649;establishment of cellular localization;4.80619398198869e-28!GO:0051641;cellular localization;1.95646352191397e-27!GO:0044237;cellular metabolic process;7.73644197148338e-27!GO:0043170;macromolecule metabolic process;9.70259835467147e-27!GO:0031975;envelope;2.43079573530593e-26!GO:0016071;mRNA metabolic process;2.57077517455928e-26!GO:0005829;cytosol;2.63679262431962e-26!GO:0031967;organelle envelope;3.3086197672348e-26!GO:0019538;protein metabolic process;8.82688928066696e-26!GO:0005634;nucleus;1.21686449182811e-25!GO:0006396;RNA processing;8.06502079534358e-25!GO:0005840;ribosome;1.37544099944624e-24!GO:0016192;vesicle-mediated transport;3.36983029547321e-24!GO:0008380;RNA splicing;8.05727320972878e-24!GO:0044260;cellular macromolecule metabolic process;5.21392554344232e-22!GO:0006886;intracellular protein transport;5.52014981129591e-22!GO:0005740;mitochondrial envelope;1.32573130638805e-21!GO:0044267;cellular protein metabolic process;1.82653561095751e-21!GO:0031966;mitochondrial membrane;2.7766652636015e-21!GO:0006397;mRNA processing;5.11087880879963e-21!GO:0006119;oxidative phosphorylation;7.971947578512e-21!GO:0006996;organelle organization and biogenesis;9.2262302627184e-20!GO:0031981;nuclear lumen;1.00485457734688e-19!GO:0019866;organelle inner membrane;2.60485876117276e-19!GO:0003735;structural constituent of ribosome;2.87593598154555e-19!GO:0006412;translation;6.13354864793414e-19!GO:0005743;mitochondrial inner membrane;1.03869726656467e-18!GO:0005794;Golgi apparatus;1.2541794143335e-18!GO:0000166;nucleotide binding;6.40276328091621e-18!GO:0065003;macromolecular complex assembly;7.78290953131501e-18!GO:0033279;ribosomal subunit;1.03562078740154e-16!GO:0005681;spliceosome;1.81942860128068e-16!GO:0044455;mitochondrial membrane part;6.39492908264131e-16!GO:0043283;biopolymer metabolic process;7.09250545334893e-16!GO:0031982;vesicle;1.77730954476518e-15!GO:0022607;cellular component assembly;1.92095914869375e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.36040755276901e-15!GO:0006512;ubiquitin cycle;4.91044926342533e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;4.91044926342533e-15!GO:0016462;pyrophosphatase activity;5.99838930824222e-15!GO:0005746;mitochondrial respiratory chain;6.17181522374557e-15!GO:0031988;membrane-bound vesicle;1.13461902858472e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.13461902858472e-14!GO:0031410;cytoplasmic vesicle;1.15231180561932e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.5440768157909e-14!GO:0003954;NADH dehydrogenase activity;1.5440768157909e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.5440768157909e-14!GO:0009058;biosynthetic process;2.58680710182653e-14!GO:0017111;nucleoside-triphosphatase activity;4.80610839680855e-14!GO:0043687;post-translational protein modification;6.72318968711619e-14!GO:0043412;biopolymer modification;6.93735174869837e-14!GO:0016023;cytoplasmic membrane-bound vesicle;7.16655207599036e-14!GO:0044249;cellular biosynthetic process;7.2445291091133e-14!GO:0006457;protein folding;2.01361244735732e-13!GO:0032553;ribonucleotide binding;2.75408927042187e-13!GO:0032555;purine ribonucleotide binding;2.75408927042187e-13!GO:0006464;protein modification process;4.22314109273995e-13!GO:0016874;ligase activity;5.67800671931227e-13!GO:0005654;nucleoplasm;1.23971237928105e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.46890087217999e-12!GO:0045271;respiratory chain complex I;1.46890087217999e-12!GO:0005747;mitochondrial respiratory chain complex I;1.46890087217999e-12!GO:0009059;macromolecule biosynthetic process;1.663956838919e-12!GO:0017076;purine nucleotide binding;1.67839752442915e-12!GO:0044445;cytosolic part;2.78004729232387e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.11185775556807e-12!GO:0042773;ATP synthesis coupled electron transport;3.11185775556807e-12!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.39255074679119e-12!GO:0012505;endomembrane system;3.4929692279264e-12!GO:0031980;mitochondrial lumen;3.69506000147304e-12!GO:0005759;mitochondrial matrix;3.69506000147304e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.77899357491248e-12!GO:0045045;secretory pathway;5.24648867276258e-12!GO:0010467;gene expression;5.54973161921419e-12!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.29470093009651e-12!GO:0043228;non-membrane-bound organelle;1.00943286612624e-11!GO:0043232;intracellular non-membrane-bound organelle;1.00943286612624e-11!GO:0044451;nucleoplasm part;2.03323611180683e-11!GO:0007264;small GTPase mediated signal transduction;2.49760070090309e-11!GO:0048193;Golgi vesicle transport;3.93059014447624e-11!GO:0048770;pigment granule;4.10981720836606e-11!GO:0042470;melanosome;4.10981720836606e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;7.75239142061056e-11!GO:0006511;ubiquitin-dependent protein catabolic process;8.15924515251252e-11!GO:0006793;phosphorus metabolic process;1.0924450318112e-10!GO:0006796;phosphate metabolic process;1.0924450318112e-10!GO:0030695;GTPase regulator activity;1.0924450318112e-10!GO:0019941;modification-dependent protein catabolic process;1.13224643265519e-10!GO:0043632;modification-dependent macromolecule catabolic process;1.13224643265519e-10!GO:0051082;unfolded protein binding;1.68502878748612e-10!GO:0008134;transcription factor binding;1.90631315195001e-10!GO:0044257;cellular protein catabolic process;1.92810012864298e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.12224082768624e-10!GO:0044265;cellular macromolecule catabolic process;3.01748696596947e-10!GO:0006605;protein targeting;3.25385960103214e-10!GO:0022618;protein-RNA complex assembly;6.19524203917202e-10!GO:0003924;GTPase activity;6.67125460325446e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.38165503325818e-10!GO:0019829;cation-transporting ATPase activity;9.76357414605905e-10!GO:0000502;proteasome complex (sensu Eukaryota);1.24904844940969e-09!GO:0015935;small ribosomal subunit;1.52608742879695e-09!GO:0043285;biopolymer catabolic process;3.99285222821455e-09!GO:0008135;translation factor activity, nucleic acid binding;4.14095043664316e-09!GO:0044248;cellular catabolic process;8.62684500352442e-09!GO:0005525;GTP binding;9.71343918318143e-09!GO:0016044;membrane organization and biogenesis;1.00590217687566e-08!GO:0008565;protein transporter activity;1.08359232823983e-08!GO:0005768;endosome;1.25533054162943e-08!GO:0006461;protein complex assembly;1.34688429446758e-08!GO:0008092;cytoskeletal protein binding;1.5639128659862e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.83797531037554e-08!GO:0008639;small protein conjugating enzyme activity;2.69898028379583e-08!GO:0032940;secretion by cell;2.73193496445212e-08!GO:0030135;coated vesicle;2.89603260874467e-08!GO:0030163;protein catabolic process;2.96683162532006e-08!GO:0044431;Golgi apparatus part;3.06224862547837e-08!GO:0005083;small GTPase regulator activity;3.37102465777892e-08!GO:0004842;ubiquitin-protein ligase activity;3.91346787215541e-08!GO:0016310;phosphorylation;3.94252349916049e-08!GO:0015934;large ribosomal subunit;3.96425427265985e-08!GO:0016604;nuclear body;4.29478827138795e-08!GO:0015986;ATP synthesis coupled proton transport;7.8343248400502e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.8343248400502e-08!GO:0009057;macromolecule catabolic process;8.10634425153605e-08!GO:0019787;small conjugating protein ligase activity;9.08316682344642e-08!GO:0051186;cofactor metabolic process;1.02094968697808e-07!GO:0032559;adenyl ribonucleotide binding;1.11570043464235e-07!GO:0007010;cytoskeleton organization and biogenesis;1.15834326073969e-07!GO:0032561;guanyl ribonucleotide binding;1.47232620736672e-07!GO:0019001;guanyl nucleotide binding;1.47232620736672e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;1.6274044525331e-07!GO:0000375;RNA splicing, via transesterification reactions;1.6274044525331e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.6274044525331e-07!GO:0005783;endoplasmic reticulum;1.97740441589378e-07!GO:0016607;nuclear speck;1.98396576990992e-07!GO:0030036;actin cytoskeleton organization and biogenesis;2.13514395605246e-07!GO:0007242;intracellular signaling cascade;2.26104469695918e-07!GO:0006913;nucleocytoplasmic transport;2.26104469695918e-07!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.50662027110057e-07!GO:0006810;transport;3.31060422029013e-07!GO:0051169;nuclear transport;3.43266968705842e-07!GO:0006446;regulation of translational initiation;3.47032396864109e-07!GO:0005524;ATP binding;4.09461162887608e-07!GO:0005761;mitochondrial ribosome;4.09461162887608e-07!GO:0000313;organellar ribosome;4.09461162887608e-07!GO:0015630;microtubule cytoskeleton;4.10638348584959e-07!GO:0030554;adenyl nucleotide binding;5.3311562594505e-07!GO:0009060;aerobic respiration;7.36738189599122e-07!GO:0005730;nucleolus;7.71308480152103e-07!GO:0048523;negative regulation of cellular process;7.91072604692445e-07!GO:0016881;acid-amino acid ligase activity;8.37710563856079e-07!GO:0019899;enzyme binding;9.49661176194657e-07!GO:0046034;ATP metabolic process;1.21985734398128e-06!GO:0043005;neuron projection;1.29224622813569e-06!GO:0045333;cellular respiration;1.3618223903198e-06!GO:0009141;nucleoside triphosphate metabolic process;1.45128023538375e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.53983976196276e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.63545446599967e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.63545446599967e-06!GO:0007399;nervous system development;1.83086243888207e-06!GO:0031252;leading edge;1.89591669813518e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.97966901824219e-06!GO:0048471;perinuclear region of cytoplasm;2.1836232375562e-06!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.20555308737702e-06!GO:0003743;translation initiation factor activity;2.22546882894617e-06!GO:0009055;electron carrier activity;2.3321226622541e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.33317806132516e-06!GO:0044440;endosomal part;2.39940547886126e-06!GO:0010008;endosome membrane;2.39940547886126e-06!GO:0006163;purine nucleotide metabolic process;2.42880900956033e-06!GO:0006413;translational initiation;2.5523164327084e-06!GO:0006754;ATP biosynthetic process;2.65843669480011e-06!GO:0006753;nucleoside phosphate metabolic process;2.65843669480011e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.69032166099951e-06!GO:0031965;nuclear membrane;2.91079461593527e-06!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.09786094548081e-06!GO:0030029;actin filament-based process;3.17771777962782e-06!GO:0009150;purine ribonucleotide metabolic process;3.48915536526244e-06!GO:0006164;purine nucleotide biosynthetic process;3.71581007323043e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.05339328613592e-06!GO:0000139;Golgi membrane;4.11159021220914e-06!GO:0051179;localization;4.36031036466055e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.69267012378032e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.69267012378032e-06!GO:0009152;purine ribonucleotide biosynthetic process;5.14555063769542e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.63143903095687e-06!GO:0009142;nucleoside triphosphate biosynthetic process;5.79995044031181e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.79995044031181e-06!GO:0009259;ribonucleotide metabolic process;5.97356425109758e-06!GO:0003712;transcription cofactor activity;6.33307088716465e-06!GO:0048475;coated membrane;6.33307088716465e-06!GO:0030117;membrane coat;6.33307088716465e-06!GO:0005635;nuclear envelope;6.7075022448614e-06!GO:0015631;tubulin binding;7.11874701443535e-06!GO:0008287;protein serine/threonine phosphatase complex;7.25242329496349e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.91364652109755e-06!GO:0016887;ATPase activity;9.20712810505409e-06!GO:0048519;negative regulation of biological process;1.05519622370462e-05!GO:0006732;coenzyme metabolic process;1.14505006499782e-05!GO:0006897;endocytosis;1.23813171587672e-05!GO:0010324;membrane invagination;1.23813171587672e-05!GO:0042623;ATPase activity, coupled;1.25104590386288e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;1.34361032650738e-05!GO:0045259;proton-transporting ATP synthase complex;1.46757666606528e-05!GO:0019717;synaptosome;1.47238147274232e-05!GO:0051234;establishment of localization;1.56543056679155e-05!GO:0032446;protein modification by small protein conjugation;1.57908918129551e-05!GO:0009260;ribonucleotide biosynthetic process;1.72289312087391e-05!GO:0017038;protein import;1.72887870363732e-05!GO:0006099;tricarboxylic acid cycle;1.74136865354691e-05!GO:0046356;acetyl-CoA catabolic process;1.74136865354691e-05!GO:0045786;negative regulation of progression through cell cycle;1.85893188737736e-05!GO:0005770;late endosome;1.98804951823349e-05!GO:0030136;clathrin-coated vesicle;2.1156849824808e-05!GO:0016567;protein ubiquitination;2.44395359732355e-05!GO:0030425;dendrite;2.67627926242082e-05!GO:0008047;enzyme activator activity;3.08764159415293e-05!GO:0009109;coenzyme catabolic process;3.46608766234135e-05!GO:0005096;GTPase activator activity;3.8725155287314e-05!GO:0005874;microtubule;3.9967074372568e-05!GO:0005769;early endosome;4.43051226771484e-05!GO:0006323;DNA packaging;5.08113660190082e-05!GO:0030027;lamellipodium;5.89197869849576e-05!GO:0005793;ER-Golgi intermediate compartment;6.15914419114908e-05!GO:0051187;cofactor catabolic process;6.4857462661833e-05!GO:0044432;endoplasmic reticulum part;6.60253597940752e-05!GO:0006084;acetyl-CoA metabolic process;6.76791365545574e-05!GO:0016568;chromatin modification;7.05223013055121e-05!GO:0007265;Ras protein signal transduction;7.32936154561106e-05!GO:0009056;catabolic process;8.41257623765135e-05!GO:0000902;cell morphogenesis;8.48921428383732e-05!GO:0032989;cellular structure morphogenesis;8.48921428383732e-05!GO:0000151;ubiquitin ligase complex;8.562285486371e-05!GO:0005905;coated pit;8.59930161182068e-05!GO:0016070;RNA metabolic process;0.000101518410891114!GO:0000245;spliceosome assembly;0.00010409870554733!GO:0006259;DNA metabolic process;0.00010409870554733!GO:0003779;actin binding;0.000105389252973529!GO:0051128;regulation of cellular component organization and biogenesis;0.000112097001813311!GO:0050657;nucleic acid transport;0.000113056203370442!GO:0051236;establishment of RNA localization;0.000113056203370442!GO:0050658;RNA transport;0.000113056203370442!GO:0006403;RNA localization;0.000113594031781478!GO:0051246;regulation of protein metabolic process;0.000113802354694349!GO:0000159;protein phosphatase type 2A complex;0.000113812705603789!GO:0019226;transmission of nerve impulse;0.00014231658303457!GO:0051056;regulation of small GTPase mediated signal transduction;0.000152213311454408!GO:0016564;transcription repressor activity;0.000156717240542708!GO:0022890;inorganic cation transmembrane transporter activity;0.000164630877307631!GO:0030120;vesicle coat;0.000191758277557327!GO:0030662;coated vesicle membrane;0.000191758277557327!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000204890664999726!GO:0005798;Golgi-associated vesicle;0.000263055905218424!GO:0008219;cell death;0.000268025204210367!GO:0016265;death;0.000268025204210367!GO:0008601;protein phosphatase type 2A regulator activity;0.000271652560056478!GO:0019208;phosphatase regulator activity;0.000278358454158411!GO:0031072;heat shock protein binding;0.000278358454158411!GO:0044453;nuclear membrane part;0.000286799190425907!GO:0016301;kinase activity;0.000288069689381633!GO:0006613;cotranslational protein targeting to membrane;0.000301335041211294!GO:0005643;nuclear pore;0.000335350196116837!GO:0006888;ER to Golgi vesicle-mediated transport;0.000348857932956519!GO:0008017;microtubule binding;0.000353664951205101!GO:0004674;protein serine/threonine kinase activity;0.000378456817104433!GO:0045055;regulated secretory pathway;0.000385765369571793!GO:0005085;guanyl-nucleotide exchange factor activity;0.000400875132332666!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000403136071692931!GO:0015399;primary active transmembrane transporter activity;0.000403136071692931!GO:0043566;structure-specific DNA binding;0.000435711461411264!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000461973489328677!GO:0003724;RNA helicase activity;0.000470473505903518!GO:0012501;programmed cell death;0.00048390839426184!GO:0005773;vacuole;0.000520465733880749!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000527841076053795!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000549127454552722!GO:0003714;transcription corepressor activity;0.000566847878430563!GO:0006915;apoptosis;0.000578007796380663!GO:0004721;phosphoprotein phosphatase activity;0.000585579457307822!GO:0005741;mitochondrial outer membrane;0.000614004995154931!GO:0030532;small nuclear ribonucleoprotein complex;0.000623616342251753!GO:0008026;ATP-dependent helicase activity;0.000669477710593923!GO:0007269;neurotransmitter secretion;0.00066975004545805!GO:0005789;endoplasmic reticulum membrane;0.000707251473189581!GO:0016311;dephosphorylation;0.000712045494562996!GO:0019904;protein domain specific binding;0.000717897410330856!GO:0006606;protein import into nucleus;0.000752078942698934!GO:0019902;phosphatase binding;0.00075690749207216!GO:0051188;cofactor biosynthetic process;0.000772440020860755!GO:0043492;ATPase activity, coupled to movement of substances;0.000781500126270045!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000808386955464274!GO:0006752;group transfer coenzyme metabolic process;0.000836266390623907!GO:0003697;single-stranded DNA binding;0.000836266390623907!GO:0009966;regulation of signal transduction;0.000899238506254829!GO:0048489;synaptic vesicle transport;0.000912531249857408!GO:0005875;microtubule associated complex;0.000920332497254793!GO:0008654;phospholipid biosynthetic process;0.00098946612583249!GO:0004386;helicase activity;0.000993439896168154!GO:0008154;actin polymerization and/or depolymerization;0.00103088808313916!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00103610015774061!GO:0019888;protein phosphatase regulator activity;0.00105610968156904!GO:0001505;regulation of neurotransmitter levels;0.00105610968156904!GO:0051170;nuclear import;0.00109649927553925!GO:0016197;endosome transport;0.00109649927553925!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00111977415980229!GO:0015980;energy derivation by oxidation of organic compounds;0.00116834821266489!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.001196699385566!GO:0022406;membrane docking;0.00124985412796837!GO:0048278;vesicle docking;0.00124985412796837!GO:0043623;cellular protein complex assembly;0.00127011788152147!GO:0005839;proteasome core complex (sensu Eukaryota);0.00127789174317584!GO:0006904;vesicle docking during exocytosis;0.00128362868710636!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00132214260698736!GO:0004812;aminoacyl-tRNA ligase activity;0.00132214260698736!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00132214260698736!GO:0051028;mRNA transport;0.00135420348526414!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00135420348526414!GO:0050789;regulation of biological process;0.00144214114718536!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00157342839577548!GO:0051726;regulation of cell cycle;0.00160182935405669!GO:0031968;organelle outer membrane;0.0016495382302063!GO:0030118;clathrin coat;0.00167234287412918!GO:0016740;transferase activity;0.00180987270461034!GO:0019867;outer membrane;0.0019430670449821!GO:0003676;nucleic acid binding;0.00202556342392859!GO:0007049;cell cycle;0.00208859689245725!GO:0051087;chaperone binding;0.0021153081749953!GO:0006402;mRNA catabolic process;0.00212660014696214!GO:0016050;vesicle organization and biogenesis;0.00212660014696214!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00212660014696214!GO:0055083;monovalent inorganic anion homeostasis;0.00212660014696214!GO:0055064;chloride ion homeostasis;0.00212660014696214!GO:0030644;cellular chloride ion homeostasis;0.00212660014696214!GO:0016791;phosphoric monoester hydrolase activity;0.00220403031742421!GO:0000074;regulation of progression through cell cycle;0.00237084732138355!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00240457484298249!GO:0005813;centrosome;0.00243409051246271!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00243409051246271!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00243409051246271!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00243409051246271!GO:0006366;transcription from RNA polymerase II promoter;0.0024489846059259!GO:0030133;transport vesicle;0.00246105261692834!GO:0050794;regulation of cellular process;0.00247922509777491!GO:0003729;mRNA binding;0.00249782685871382!GO:0043038;amino acid activation;0.00249782685871382!GO:0006418;tRNA aminoacylation for protein translation;0.00249782685871382!GO:0043039;tRNA aminoacylation;0.00249782685871382!GO:0006470;protein amino acid dephosphorylation;0.00251669838339719!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00261967510977262!GO:0005938;cell cortex;0.00266678887392958!GO:0009108;coenzyme biosynthetic process;0.00277789433520406!GO:0009892;negative regulation of metabolic process;0.00281172488662519!GO:0007268;synaptic transmission;0.00282569276994896!GO:0043069;negative regulation of programmed cell death;0.00283091971002072!GO:0030867;rough endoplasmic reticulum membrane;0.00287908967795476!GO:0051276;chromosome organization and biogenesis;0.0028839467362907!GO:0006916;anti-apoptosis;0.00294188163934466!GO:0030427;site of polarized growth;0.00313351166388181!GO:0006607;NLS-bearing substrate import into nucleus;0.00315987576983617!GO:0006612;protein targeting to membrane;0.00315987576983617!GO:0031901;early endosome membrane;0.00318949186089148!GO:0048487;beta-tubulin binding;0.0033222595686357!GO:0008286;insulin receptor signaling pathway;0.00333491721995496!GO:0005048;signal sequence binding;0.00339840118166888!GO:0051427;hormone receptor binding;0.00341808156452598!GO:0008021;synaptic vesicle;0.00343365092173957!GO:0046578;regulation of Ras protein signal transduction;0.00345247467310009!GO:0043066;negative regulation of apoptosis;0.00365542537004006!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00373099196154712!GO:0042802;identical protein binding;0.00376714285388716!GO:0001726;ruffle;0.00385013333776911!GO:0009117;nucleotide metabolic process;0.00401240530210253!GO:0000323;lytic vacuole;0.0040754110085705!GO:0005764;lysosome;0.0040754110085705!GO:0030426;growth cone;0.00412500972055365!GO:0051168;nuclear export;0.00413641543537694!GO:0031902;late endosome membrane;0.00420604726503175!GO:0005791;rough endoplasmic reticulum;0.00430736051538956!GO:0042254;ribosome biogenesis and assembly;0.00435453275746226!GO:0051920;peroxiredoxin activity;0.00445454964795401!GO:0003713;transcription coactivator activity;0.0045890529593161!GO:0004722;protein serine/threonine phosphatase activity;0.00466224130069807!GO:0006650;glycerophospholipid metabolic process;0.00466224130069807!GO:0006891;intra-Golgi vesicle-mediated transport;0.00475502928352396!GO:0000314;organellar small ribosomal subunit;0.00502477200341495!GO:0005763;mitochondrial small ribosomal subunit;0.00502477200341495!GO:0008186;RNA-dependent ATPase activity;0.00510744536691895!GO:0004298;threonine endopeptidase activity;0.00535650983829665!GO:0005815;microtubule organizing center;0.00538839183159728!GO:0043209;myelin sheath;0.00546840037790264!GO:0050811;GABA receptor binding;0.00584814545297902!GO:0035257;nuclear hormone receptor binding;0.00600499691008413!GO:0051261;protein depolymerization;0.00600499691008413!GO:0048468;cell development;0.00605789370305642!GO:0008361;regulation of cell size;0.00617473044370823!GO:0050767;regulation of neurogenesis;0.00618412914243189!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00671661626186204!GO:0046467;membrane lipid biosynthetic process;0.00675759789684984!GO:0005516;calmodulin binding;0.00688028687011749!GO:0005869;dynactin complex;0.00701135772817729!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00701960850802402!GO:0004667;prostaglandin-D synthase activity;0.00701960850802402!GO:0050802;circadian sleep/wake cycle, sleep;0.00701960850802402!GO:0022410;circadian sleep/wake cycle process;0.00701960850802402!GO:0042749;regulation of circadian sleep/wake cycle;0.00701960850802402!GO:0065002;intracellular protein transport across a membrane;0.00757963354664022!GO:0033673;negative regulation of kinase activity;0.00837364629073772!GO:0006469;negative regulation of protein kinase activity;0.00837364629073772!GO:0007019;microtubule depolymerization;0.00842474558535212!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.00846617139878694!GO:0016363;nuclear matrix;0.00868025430292237!GO:0043021;ribonucleoprotein binding;0.00884794469523723!GO:0016481;negative regulation of transcription;0.00899034649468624!GO:0006333;chromatin assembly or disassembly;0.0092503912784899!GO:0005885;Arp2/3 protein complex;0.00980724225585677!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00999505747255408!GO:0003746;translation elongation factor activity;0.0102234479181389!GO:0044448;cell cortex part;0.0102234479181389!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0104891270661003!GO:0006892;post-Golgi vesicle-mediated transport;0.0106309440224128!GO:0008139;nuclear localization sequence binding;0.010732428157895!GO:0005100;Rho GTPase activator activity;0.0117645676768209!GO:0016049;cell growth;0.0117846219778109!GO:0005774;vacuolar membrane;0.0119776897886799!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0121553686416837!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0121553686416837!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0126324851511827!GO:0032011;ARF protein signal transduction;0.0126324851511827!GO:0032012;regulation of ARF protein signal transduction;0.0126324851511827!GO:0050749;apolipoprotein E receptor binding;0.0129557459126927!GO:0030041;actin filament polymerization;0.0130709735417824!GO:0007272;ensheathment of neurons;0.0130709735417824!GO:0008366;axon ensheathment;0.0130709735417824!GO:0004004;ATP-dependent RNA helicase activity;0.0130709735417824!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0136319579817225!GO:0033043;regulation of organelle organization and biogenesis;0.0136319579817225!GO:0006401;RNA catabolic process;0.0136319579817225!GO:0046930;pore complex;0.0140237435074842!GO:0043087;regulation of GTPase activity;0.0140544135129824!GO:0048500;signal recognition particle;0.0140905040678267!GO:0012506;vesicle membrane;0.0142708709567462!GO:0009165;nucleotide biosynthetic process;0.0144215361807107!GO:0048167;regulation of synaptic plasticity;0.0146568142441393!GO:0000062;acyl-CoA binding;0.0146732722452393!GO:0007266;Rho protein signal transduction;0.0149273812471643!GO:0006414;translational elongation;0.0150775818303984!GO:0030030;cell projection organization and biogenesis;0.0153699735195172!GO:0048858;cell projection morphogenesis;0.0153699735195172!GO:0032990;cell part morphogenesis;0.0153699735195172!GO:0019903;protein phosphatase binding;0.0153699735195172!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0158820214672297!GO:0051348;negative regulation of transferase activity;0.0161469645915676!GO:0031324;negative regulation of cellular metabolic process;0.0161791230017961!GO:0019887;protein kinase regulator activity;0.0161929736618821!GO:0016859;cis-trans isomerase activity;0.0161929736618821!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.01649409547039!GO:0031114;regulation of microtubule depolymerization;0.0168151932223343!GO:0007026;negative regulation of microtubule depolymerization;0.0168151932223343!GO:0030384;phosphoinositide metabolic process;0.0168891783256959!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0169470331555349!GO:0005762;mitochondrial large ribosomal subunit;0.0170482332265511!GO:0000315;organellar large ribosomal subunit;0.0170482332265511!GO:0008250;oligosaccharyl transferase complex;0.017467602023342!GO:0008022;protein C-terminus binding;0.0176125001290815!GO:0030258;lipid modification;0.0185385125149878!GO:0035258;steroid hormone receptor binding;0.018561208413378!GO:0043681;protein import into mitochondrion;0.0191086367063496!GO:0004183;carboxypeptidase E activity;0.0193017962429727!GO:0030070;insulin processing;0.0193017962429727!GO:0005868;cytoplasmic dynein complex;0.0194717994057975!GO:0007017;microtubule-based process;0.0197637827497941!GO:0035035;histone acetyltransferase binding;0.0198339235409328!GO:0043488;regulation of mRNA stability;0.0199324197830656!GO:0043487;regulation of RNA stability;0.0199324197830656!GO:0042026;protein refolding;0.0204640854237502!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0205788500719976!GO:0003690;double-stranded DNA binding;0.0209598853819146!GO:0051540;metal cluster binding;0.0210232855797235!GO:0051536;iron-sulfur cluster binding;0.0210232855797235!GO:0030742;GTP-dependent protein binding;0.0211860934610103!GO:0000059;protein import into nucleus, docking;0.0217333492085837!GO:0031124;mRNA 3'-end processing;0.021746550902703!GO:0065009;regulation of a molecular function;0.021746550902703!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0222656566328678!GO:0006643;membrane lipid metabolic process;0.0227213539855474!GO:0030660;Golgi-associated vesicle membrane;0.0244737323444595!GO:0019894;kinesin binding;0.0247571658847611!GO:0007050;cell cycle arrest;0.0250629662630611!GO:0003711;transcription elongation regulator activity;0.0252770243689856!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0257153857683244!GO:0050803;regulation of synapse structure and activity;0.0257641689409375!GO:0051539;4 iron, 4 sulfur cluster binding;0.026206684221439!GO:0001508;regulation of action potential;0.026206684221439!GO:0006376;mRNA splice site selection;0.026206684221439!GO:0000389;nuclear mRNA 3'-splice site recognition;0.026206684221439!GO:0005092;GDP-dissociation inhibitor activity;0.0262864842268755!GO:0006974;response to DNA damage stimulus;0.0263359562547703!GO:0004672;protein kinase activity;0.0274900590746747!GO:0030132;clathrin coat of coated pit;0.0274922228008338!GO:0005099;Ras GTPase activator activity;0.0278116431554163!GO:0030137;COPI-coated vesicle;0.0283778446342045!GO:0030119;AP-type membrane coat adaptor complex;0.0292818733467885!GO:0007005;mitochondrion organization and biogenesis;0.0305203455284614!GO:0006364;rRNA processing;0.0307561250421989!GO:0030658;transport vesicle membrane;0.0308984268011969!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0309457707329878!GO:0042176;regulation of protein catabolic process;0.0311399459599124!GO:0004683;calmodulin-dependent protein kinase activity;0.03127453268401!GO:0005765;lysosomal membrane;0.0314454992349325!GO:0007034;vacuolar transport;0.0339890823212581!GO:0042995;cell projection;0.0344825507428179!GO:0006818;hydrogen transport;0.0344825507428179!GO:0006399;tRNA metabolic process;0.0345227606681243!GO:0006595;polyamine metabolic process;0.0345581807556635!GO:0051789;response to protein stimulus;0.0345581807556635!GO:0006986;response to unfolded protein;0.0345581807556635!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0346307550213058!GO:0042578;phosphoric ester hydrolase activity;0.0348938960781117!GO:0044437;vacuolar part;0.0350871395750317!GO:0004576;oligosaccharyl transferase activity;0.0357224098535733!GO:0044433;cytoplasmic vesicle part;0.0357224098535733!GO:0051252;regulation of RNA metabolic process;0.0357257519035374!GO:0001666;response to hypoxia;0.0358214084845606!GO:0019207;kinase regulator activity;0.0360865338717847!GO:0006468;protein amino acid phosphorylation;0.0363647758812328!GO:0006378;mRNA polyadenylation;0.0364780062455643!GO:0017166;vinculin binding;0.0364780062455643!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0365573212116524!GO:0046488;phosphatidylinositol metabolic process;0.0371441290663572!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0374800264122741!GO:0045047;protein targeting to ER;0.0374800264122741!GO:0008180;signalosome;0.0374800264122741!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0392081294556536!GO:0031371;ubiquitin conjugating enzyme complex;0.0393394927435625!GO:0051287;NAD binding;0.0399344719889473!GO:0045892;negative regulation of transcription, DNA-dependent;0.0399344719889473!GO:0046474;glycerophospholipid biosynthetic process;0.0405894829867565!GO:0032535;regulation of cellular component size;0.0407278668731719!GO:0006383;transcription from RNA polymerase III promoter;0.040799678569504!GO:0030911;TPR domain binding;0.0408714754538282!GO:0046839;phospholipid dephosphorylation;0.0413618954426808!GO:0030131;clathrin adaptor complex;0.0413618954426808!GO:0043086;negative regulation of catalytic activity;0.0420088348251367!GO:0015992;proton transport;0.0420982105415506!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0424311897075244!GO:0004423;iduronate-2-sulfatase activity;0.0424539625668772!GO:0001558;regulation of cell growth;0.0426164089437684!GO:0030832;regulation of actin filament length;0.0427380564654947!GO:0005667;transcription factor complex;0.0429322461384011!GO:0007006;mitochondrial membrane organization and biogenesis;0.0444318850124814!GO:0016072;rRNA metabolic process;0.0448517377874514!GO:0008088;axon cargo transport;0.0450418929224611!GO:0051248;negative regulation of protein metabolic process;0.0452012960915009!GO:0065007;biological regulation;0.0460958133982908!GO:0008312;7S RNA binding;0.0461839694885623!GO:0005802;trans-Golgi network;0.04736637766458!GO:0006887;exocytosis;0.0480103517619977!GO:0030125;clathrin vesicle coat;0.0480942187223146!GO:0030665;clathrin coated vesicle membrane;0.0480942187223146!GO:0005952;cAMP-dependent protein kinase complex;0.0486830324808277!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0488655801503229!GO:0019198;transmembrane receptor protein phosphatase activity;0.0488655801503229!GO:0007243;protein kinase cascade;0.0489769010091659!GO:0016615;malate dehydrogenase activity;0.049268510750306!GO:0015629;actin cytoskeleton;0.0493957137328902!GO:0001578;microtubule bundle formation;0.049502533914467
|sample_id=10164
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=caudate nucleus
|top_motifs=RFX1:3.97175482342;RFX2..5_RFXANK_RFXAP:3.64544407433;MYFfamily:3.48263504082;OCT4_SOX2{dimer}:3.44705555159;REST:3.37911675436;ZFP161:3.30445291975;EGR1..3:3.3009324538;HBP1_HMGB_SSRP1_UBTF:3.23659739417;AHR_ARNT_ARNT2:3.14322991611;NHLH1,2:3.10008124133;PRDM1:2.98687000341;MED-1{core}:2.98125010622;ARID5B:2.83864110819;RREB1:2.76841387688;CUX2:2.65440622588;ZBTB6:2.6391000515;SOX2:2.63895781193;MTE{core}:2.62091518657;PRRX1,2:2.57613833364;GTF2I:2.53903690789;ATF2:2.33500679466;DBP:2.32104832072;PAX5:2.28033591437;MZF1:2.2752053433;FOXD3:2.273471206;TFAP2B:2.26826958626;MTF1:2.13430986268;BREu{core}:2.12076182831;FOXM1:2.10259643387;ADNP_IRX_SIX_ZHX:2.04113697876;GATA4:2.01740559095;HIC1:1.96828061427;ALX1:1.93255068612;NRF1:1.93212679757;NKX6-1,2:1.92620447759;NFIL3:1.92463010072;CDC5L:1.90731523935;TLX2:1.88830372693;SOX{8,9,10}:1.88351671705;ONECUT1,2:1.87255250416;PATZ1:1.86097573346;MAZ:1.84119471543;POU6F1:1.82648880475;SOX5:1.82397206215;NKX2-3_NKX2-5:1.82162050117;RBPJ:1.81618331117;POU3F1..4:1.78747124153;HOXA9_MEIS1:1.75191795005;NKX3-2:1.68263738134;LMO2:1.66970033105;IKZF2:1.60980478687;POU5F1:1.46713070888;TGIF1:1.45479611071;FOXP1:1.43495498863;FOX{F1,F2,J1}:1.42135208614;GFI1B:1.40723167677;FOXP3:1.386421239;HOX{A4,D4}:1.38478919414;KLF4:1.35564706169;SP1:1.35488817538;EP300:1.27492963821;PAX4:1.24092861317;PAX6:1.23711963891;SMAD1..7,9:1.2290848925;T:1.20739699215;ZNF143:1.17446354099;FOXN1:1.15416526006;PAX1,9:1.13025675728;LEF1_TCF7_TCF7L1,2:1.0949187807;HMGA1,2:1.08720663694;AR:1.07305828742;NFIX:1.03394172991;CRX:1.0110876222;NANOG:0.994833373561;MYOD1:0.991104663635;BPTF:0.974170414151;ZNF384:0.942465665648;MAFB:0.931198259414;CREB1:0.927986303704;PBX1:0.908326512242;POU1F1:0.907691845941;SOX17:0.860780921507;ZBTB16:0.850144145882;FOX{I1,J2}:0.838640101914;STAT1,3:0.822483923694;HAND1,2:0.771363907703;VSX1,2:0.769522481604;GCM1,2:0.769402373041;EBF1:0.766657062297;GFI1:0.756684719811;XBP1:0.756606085422;ZNF423:0.714268969241;STAT2,4,6:0.688040117199;MYBL2:0.672760502278;SREBF1,2:0.662774701352;GTF2A1,2:0.644824734206;JUN:0.642226393389;HSF1,2:0.640207283913;ZIC1..3:0.61970363557;TOPORS:0.618346308498;GZF1:0.612049337185;TFDP1:0.605415590561;TFAP2{A,C}:0.605111490629;FOX{D1,D2}:0.59525821534;ZEB1:0.48881919606;HOX{A6,A7,B6,B7}:0.45440070457;TEF:0.452480133633;HMX1:0.382671517814;YY1:0.294706941589;FOXO1,3,4:0.277486013443;PAX2:0.252390663708;ZNF238:0.237762105473;LHX3,4:0.223764219486;MEF2{A,B,C,D}:0.11225992826;NR3C1:0.0930556059392;NFY{A,B,C}:0.0929973289931;TLX1..3_NFIC{dimer}:0.0795459353879;RORA:0.0722619324133;FOXQ1:0.0328744869979;UFEwm:0.0286624996041;CDX1,2,4:0.0156840135201;IRF7:-0.00803854912265;ATF4:-0.0434581098388;ATF5_CREB3:-0.0604014606635;PDX1:-0.147662383106;AIRE:-0.169764460621;SPZ1:-0.173211394033;NFATC1..3:-0.176853806967;XCPE1{core}:-0.196625955154;IRF1,2:-0.248675733533;ESRRA:-0.289344796258;PAX3,7:-0.302434136581;SNAI1..3:-0.34087679676;bHLH_family:-0.358214258675;NFE2L2:-0.377620779651;FOXL1:-0.400594919388;SPI1:-0.400808413233;CEBPA,B_DDIT3:-0.451386944827;HIF1A:-0.504850409775;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.550072318092;SPIB:-0.602343764429;IKZF1:-0.609139153158;DMAP1_NCOR{1,2}_SMARC:-0.621580385141;NFE2:-0.635368096072;PITX1..3:-0.718954625815;ETS1,2:-0.733050326497;GATA6:-0.79030955319;TBX4,5:-0.817288736383;FOXA2:-0.860870022232;NKX3-1:-0.898558698495;TFAP4:-0.906274400786;HNF1A:-0.923098258543;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.945970071261;EVI1:-0.979313622951;ATF6:-0.98026160694;NFE2L1:-0.996706779087;RXR{A,B,G}:-1.01151692168;FOS_FOS{B,L1}_JUN{B,D}:-1.03121544527;ELK1,4_GABP{A,B1}:-1.03669684464;TFCP2:-1.05398327274;NANOG{mouse}:-1.08371132835;TEAD1:-1.08422839136;FOSL2:-1.09891100716;BACH2:-1.10304828688;TP53:-1.11667761657;HNF4A_NR2F1,2:-1.15567048532;ZNF148:-1.19451018058;RUNX1..3:-1.2015532963;NR5A1,2:-1.21352722058;NFKB1_REL_RELA:-1.21471380382;ELF1,2,4:-1.2948410279;E2F1..5:-1.34062956736;NKX2-2,8:-1.34086664912;MYB:-1.36170163162;PAX8:-1.37868257075;ALX4:-1.43480441842;NR1H4:-1.44520583521;HLF:-1.47096198073;GLI1..3:-1.48841776774;ESR1:-1.50307563867;TBP:-1.52291814197;POU2F1..3:-1.56348894958;RXRA_VDR{dimer}:-1.60491677131;SRF:-1.86413611851;TAL1_TCF{3,4,12}:-1.89125288471;STAT5{A,B}:-1.8987991289;NKX2-1,4:-1.9266389183;HES1:-2.12207130608;NR6A1:-2.17728042645;HOX{A5,B5}:-2.65058963514;PPARG:-2.79079045759;EN1,2:-2.86071810384
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10164-103B2;search_select_hide=table117:FF:10164-103B2
}}
}}

Latest revision as of 12:24, 3 June 2020

Name:caudate nucleus, adult, donor10252
Species:Human (Homo sapiens)
Library ID:CNhs12321
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecaudate nucleus
dev stageNA
sexfemale
age76
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005372
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12321 CAGE DRX008630 DRR009502
Accession ID Hg19

Library idBAMCTSS
CNhs12321 DRZ000927 DRZ002312
Accession ID Hg38

Library idBAMCTSS
CNhs12321 DRZ012277 DRZ013662
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10035downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.319
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.998
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.31
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0.0494
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.628
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.429
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0918
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.2
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0494
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.0938
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.205
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.0938
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0494
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.224
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.83
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0938
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0494
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0984
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0938
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0639
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0494
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.838
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.134
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.171
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.00266
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0247
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.0938
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.467
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0314
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.171
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0494
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0583
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.517
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0494
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.0494
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.476
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.513
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.134
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.429
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.903
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0494
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.0938
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.236
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0494
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.577
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.389
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0.836
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.344
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0938
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.467
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0494
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12321

Jaspar motifP-value
MA0002.20.00579
MA0003.10.277
MA0004.10.455
MA0006.10.281
MA0007.10.335
MA0009.10.2
MA0014.10.76
MA0017.10.00168
MA0018.20.436
MA0019.10.751
MA0024.10.822
MA0025.10.272
MA0027.10.317
MA0028.10.135
MA0029.10.0108
MA0030.10.385
MA0031.10.981
MA0035.20.00658
MA0038.10.32
MA0039.20.239
MA0040.10.818
MA0041.10.725
MA0042.10.826
MA0043.10.743
MA0046.10.0105
MA0047.20.0513
MA0048.10.201
MA0050.10.0479
MA0051.10.132
MA0052.10.396
MA0055.10.00417
MA0057.10.894
MA0058.10.399
MA0059.10.0809
MA0060.10.403
MA0061.10.00752
MA0062.20.0157
MA0065.24.19891e-4
MA0066.10.0141
MA0067.10.737
MA0068.10.548
MA0069.10.597
MA0070.10.462
MA0071.10.0235
MA0072.10.181
MA0073.10.315
MA0074.10.339
MA0076.10.287
MA0077.10.406
MA0078.10.548
MA0079.20.486
MA0080.29.42935e-9
MA0081.10.0351
MA0083.10.0182
MA0084.10.961
MA0087.10.867
MA0088.10.204
MA0090.10.196
MA0091.10.247
MA0092.10.246
MA0093.10.471
MA0099.27.35267e-16
MA0100.10.816
MA0101.10.00956
MA0102.20.334
MA0103.10.259
MA0104.20.48
MA0105.19.2473e-4
MA0106.10.0297
MA0107.10.00822
MA0108.20.127
MA0111.10.511
MA0112.26.48209e-4
MA0113.10.527
MA0114.10.00254
MA0115.10.435
MA0116.10.00762
MA0117.10.79
MA0119.10.0608
MA0122.10.916
MA0124.10.839
MA0125.10.285
MA0131.10.919
MA0135.10.0308
MA0136.14.99455e-12
MA0137.20.453
MA0138.20.702
MA0139.10.368
MA0140.18.76382e-4
MA0141.10.00524
MA0142.10.896
MA0143.10.763
MA0144.10.465
MA0145.10.114
MA0146.10.0219
MA0147.10.343
MA0148.10.0335
MA0149.10.0149
MA0150.12.74942e-4
MA0152.10.638
MA0153.10.427
MA0154.10.0308
MA0155.10.642
MA0156.12.63173e-6
MA0157.10.367
MA0159.10.0115
MA0160.10.0143
MA0162.10.113
MA0163.11.55002e-5
MA0164.10.698
MA0258.10.00861
MA0259.10.937



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12321

Novel motifP-value
10.0391
100.0446
1000.332
1010.51
1020.717
1030.119
1040.0874
1050.122
1060.0229
1070.0755
1080.767
1090.00496
110.0137
1100.0599
1110.087
1120.397
1130.74
1140.132
1150.898
1160.18
1170.0131
1180.185
1190.124
120.924
1200.161
1210.269
1220.831
1230.823
1240.332
1250.281
1260.0551
1270.335
1280.103
1290.463
130.00342
1300.417
1310.168
1320.652
1330.0232
1340.77
1350.19
1360.0165
1370.606
1380.925
1390.152
140.795
1400.348
1410.339
1420.55
1430.0196
1440.861
1450.169
1460.456
1470.924
1480.0984
1490.21
150.084
1500.177
1510.499
1520.0741
1530.826
1540.514
1550.686
1560.57
1570.548
1580.763
1590.0493
160.064
1600.197
1610.331
1620.943
1630.901
1640.041
1650.0803
1660.81
1670.619
1680.289
1690.00748
170.112
180.134
190.12
20.787
200.199
210.1
220.182
230.25
240.0663
250.51
264.05408e-4
270.646
280.728
290.018
30.0569
300.869
310.776
320.0294
330.0699
340.649
350.638
360.12
370.0347
380.273
390.306
40.714
400.0295
410.318
420.278
430.112
440.231
450.646
460.0657
470.0666
480.0569
490.148
50.365
500.345
510.386
520.438
530.952
540.348
550.467
560.489
570.264
580.288
590.0723
60.907
600.0553
610.129
620.166
630.151
640.157
650.187
660.125
670.336
680.195
690.32
70.0659
700.0431
710.0118
720.4
730.0348
740.596
750.0394
760.468
770.152
780.00133
790.219
80.0761
800.651
810.562
820.428
830.0876
840.843
850.153
860.217
879.8541e-4
880.775
890.377
90.415
900.0499
910.324
920.361
930.945
940.133
950.0263
960.811
970.729
980.179
990.43



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12321


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001873 (caudate nucleus)
0000369 (corpus striatum)
0002435 (striatum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009663 (telencephalic nucleus)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0000125 (neural nucleus)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0005383 (caudate-putamen)
0010011 (collection of basal ganglia)
0000204 (ventral part of telencephalon)
0005382 (dorsal striatum)
0000454 (cerebral subcortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010164 (human caudate nucleus - adult donor sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010122 (future caudate nucleus)
UBERON:0010316 (germ layer / neural crest)

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