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{{f5samples
{{f5samples
|id=FF:11440-118H9
|DRA_sample_Accession=CAGE@SAMD00005569
|name=Synoviocyte, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005569
|sample_id=11440
|accession_numbers=CAGE;DRX008518;DRR009390;DRZ000815;DRZ002200;DRZ012165;DRZ013550
|rna_tube_id=118H9
|accession_numbers_RNASeq=sRNA-Seq;DRX037041;DRR041407;DRZ007049
|rna_box=118
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0006914,UBERON:0004905,UBERON:0000486,UBERON:0006915,UBERON:0007616,UBERON:0000042,UBERON:0000982,UBERON:0004458,UBERON:0010317,UBERON:0002217,UBERON:0002018,UBERON:0002204,UBERON:0001434,UBERON:0004770
|rna_position=H9
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000499,CL:0000153,CL:0000327,CL:0000447,CL:0000215,CL:0000255,CL:0000214
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=2540
|rna_catalog_number=CA408-R10a
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=61 years old adult
|sample_tissue=synovium
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=61
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=synovial cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=1
|sample_note=
|profile_hcage=CNhs12050,LSID838,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10004,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000066,CL:0000134,CL:0000144,CL:0000151,CL:0000153,CL:0000213,CL:0000214,CL:0000215,CL:0000219,CL:0000220,CL:0000222,CL:0000255,CL:0000327,CL:0000447,CL:0000499,CL:0000548,CL:0000723,CL:0002078,CL:0002320,CL:0002321,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000042,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000486,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000982,UBERON:0001062,UBERON:0001434,UBERON:0002018,UBERON:0002050,UBERON:0002204,UBERON:0002217,UBERON:0002384,UBERON:0002532,UBERON:0004120,UBERON:0004457,UBERON:0004458,UBERON:0004765,UBERON:0004770,UBERON:0004905,UBERON:0004923,UBERON:0005423,UBERON:0006914,UBERON:0006915,UBERON:0007616
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000187
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.82!73.10!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.75!146.87!OSR1;;chr5:158526917..158526932,-!p1@EBF1!1.69!114.92!EBF1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.67!45.77!HOXC5;;chr9:132427972..132428056,+!p1@PRRX2!1.64!54.99!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.64!42.48!PRRX2;;chr6:85474299..85474324,-!p1@TBX18!1.61!70.14!TBX18;;chr10:131762504..131762555,-!p1@EBF3!1.47!28.65!EBF3;;chr8:25902876..25902936,-!p1@EBF2!1.32!20.09!EBF2;;chr5:158527104..158527135,-!p4@EBF1!1.32!19.76!EBF1;;chr2:239756671..239756732,+!p1@TWIST2!1.31!61.58!TWIST2;;chr7:19157248..19157268,-!p1@TWIST1!1.30!52.03!TWIST1;;chr17:48072574..48072597,-!p1@DLX3!1.30!19.10!DLX3;;chr1:170632477..170632506,+!p6@PRRX1!1.28!18.11!PRRX1;;chr8:72756667..72756736,-!p2@MSC!1.26!26.67!MSC;;chr12:53614115..53614154,-!p1@RARG!1.23!83.97!RARG;;chr14:61116183..61116208,-!p1@SIX1!1.23!59.60!SIX1;;chr20:51588873..51588953,+!p1@TSHZ2!1.23!21.07!TSHZ2;;chr19:13134772..13134822,+!p2@NFIX!1.22!22.72!NFIX;;chr8:72756637..72756664,-!p3@MSC!1.22!17.78!MSC;;chr7:44143925..44143970,+!p1@AEBP1!1.21!331.93!AEBP1;;chr16:54320617..54320643,-!p3@IRX3!1.19!18.44!IRX3;;chr2:239756739..239756755,+!p2@TWIST2!1.17!23.71!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.17!18.77!PRRX1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.16!13.50!HOXC5;;chr16:79634624..79634642,-!p1@MAF!1.15!51.04!MAF;;chr10:63809013..63809041,+!p3@ARID5B!1.14!71.13!ARID5B;;chr1:170632959..170632987,+!p4@PRRX1!1.14!14.16!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!1.12!12.18!EMX2;;chr7:19157043..19157088,-!p2@TWIST1!1.10!29.31!TWIST1;;chr7:28448965..28448994,+!p2@CREB5!1.07!38.20!CREB5;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.07!10.87!SEBOX;;chr1:170632137..170632172,+!p10@PRRX1!1.05!10.21!PRRX1;;chr12:54378923..54378966,+!p1@HOXC10!1.04!9.88!HOXC10;;chr16:79633894..79633954,-!p3@MAF!1.02!18.44!MAF;;chr16:54320646..54320672,-!p2@IRX3!1.02!14.49!IRX3;;chr2:45236540..45236577,-!p1@SIX2!1.02!9.55!SIX2;;chr5:158527139..158527161,-!p5@EBF1!1.01!9.22!EBF1;;chr11:46299199..46299233,+!p1@CREB3L1!1.00!47.42!CREB3L1;;chr5:134369905..134369972,-!p1@PITX1!1.00!13.83!PITX1;;chr12:54410948..54410992,+!p3@HOXC5!1.00!8.89!HOXC5;;chrY:21906594..21906622,-!p1@KDM5D!1.00!8.89!KDM5D;;chr19:50432453..50432468,+!p1@ATF5!0.99!507.11!ATF5;;chr10:63853436..63853442,+!p4@ARID5B!0.98!47.42!ARID5B;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.98!8.56!SEBOX;;chr2:176994408..176994492,+!p1@HOXD8!0.98!8.56!HOXD8;;chr11:46299539..46299620,+!p2@CREB3L1!0.97!14.49!CREB3L1;;chr8:72756267..72756296,-!p4@MSC!0.97!12.51!MSC;;chr8:72756213..72756243,-!p5@MSC!0.97!10.87!MSC;;chr7:15726296..15726315,-!p1@MEOX2!0.97!8.23!MEOX2;;chr12:54393880..54393962,+!p1@HOXC9!0.97!8.23!HOXC9;;chr12:52445218..52445237,+!p1@NR4A1!0.96!106.36!NR4A1;;chr16:79634595..79634620,-!p2@MAF!0.96!15.15!MAF;;chr18:19749541..19749557,+!p1@GATA6!0.95!25.36!GATA6;;chr1:170632723..170632739,+!p8@PRRX1!0.95!7.90!PRRX1;;chr21:36260773..36260804,-!p7@RUNX1!0.93!10.21!RUNX1;;chr10:63851669..63851682,+!p10@ARID5B!0.93!8.23!ARID5B;;chr1:170632250..170632277,+!p7@PRRX1!0.93!7.57!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.93!7.57!PRRX1;;chr15:67430351..67430366,+!p10@SMAD3!0.93!7.57!SMAD3;;chr10:63809106..63809127,+!p1@ARID5B!0.92!102.08!ARID5B;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.92!76.73!GLIS2;;chr12:54772960..54773015,-!p3@ZNF385A!0.92!36.55!ZNF385A;;chr10:63809077..63809089,+!p5@ARID5B!0.92!16.46!ARID5B;;chr6:1610293..1610310,+!p1@FOXC1!0.92!12.51!FOXC1;;chr1:170633262..170633285,+!p3@PRRX1!0.91!8.23!PRRX1;;chr14:24837368..24837401,+!p1@NFATC4!0.90!16.79!NFATC4;;chr1:170632762..170632786,+!p13@PRRX1!0.90!6.92!PRRX1;;chr20:51589402..51589423,+!p6@TSHZ2!0.90!6.92!TSHZ2;;chr7:27213893..27213954,-!p1@HOXA10!0.90!6.92!HOXA10;;chr7:44143997..44144008,+!p3@AEBP1!0.88!8.56!AEBP1;;chr14:75894714..75894733,+!p1@JDP2!0.87!192.64!JDP2;;chr9:110252035..110252057,-!p1@KLF4!0.87!109.33!KLF4;;chr5:174151553..174151610,+!p1@MSX2!0.87!10.87!MSX2;;chr4:26322267..26322334,+!p3@RBPJ!0.86!15.81!RBPJ;;chr7:44143978..44143989,+!p2@AEBP1!0.86!11.85!AEBP1;;chr12:54402745..54402788,+!p1@HOXC8!0.86!6.26!HOXC8;;chr1:170632683..170632696,+!p12@PRRX1!0.86!6.26!PRRX1;;chr20:51589133..51589159,+!p2@TSHZ2!0.86!6.26!TSHZ2;;chr18:22932080..22932170,-!p1@ZNF521!0.84!26.67!ZNF521;;chr12:53625966..53626012,-!p2@RARG!0.84!16.46!RARG;;chr1:170632115..170632136,+!p9@PRRX1!0.84!5.93!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!0.84!5.93!HOXA3;;chr10:31607702..31607755,+!p3@ZEB1!0.82!6.59!ZEB1;;chr5:158527253..158527264,-!p10@EBF1!0.82!5.60!EBF1;;chr8:49833948..49833973,-!p2@SNAI2!0.81!37.21!SNAI2;;chr7:28725740..28725778,+!p1@CREB5!0.80!52.03!CREB5;;chr7:42276787..42276815,-!p1@GLI3!0.80!15.15!GLI3;;chr16:54320675..54320715,-!p1@IRX3!0.80!12.18!IRX3;;chr8:99956662..99956684,+!p1@OSR2!0.80!8.56!OSR2;;chr18:22932004..22932021,-!p2@ZNF521!0.80!5.27!ZNF521;;chr19:13106214..13106382,+!p1@NFIX!0.79!131.72!NFIX;;chr3:157823517..157823562,-!p1@SHOX2!0.79!5.60!SHOX2;;chr1:158969752..158969780,+!p6@IFI16!0.78!9.22!IFI16;;chr16:79634581..79634592,-!p4@MAF!0.77!4.94!MAF;;chr8:93074803..93074845,-!p1@RUNX1T1!0.77!4.94!RUNX1T1;;chr3:71007344..71007348,-!p6@FOXP1!0.75!20.42!FOXP1;;chr4:26322673..26322684,+!p11@RBPJ!0.75!4.61!RBPJ;;chr5:174151612..174151633,+!p2@MSX2!0.75!4.61!MSX2;;chr7:15725757..15725828,-!p5@MEOX2!0.75!4.61!MEOX2;;chr7:27196267..27196311,-!p1@HOXA7!0.75!4.61!HOXA7;;chr7:28452130..28452154,+!p10@CREB5!0.75!4.61!CREB5;;chr10:131762410..131762436,-!p2@EBF3!0.75!4.61!EBF3;;chr8:49833978..49833996,-!p1@SNAI2!0.74!102.74!SNAI2;;chr7:28448995..28449011,+!p4@CREB5!0.74!6.59!CREB5;;chr2:8822176..8822196,+!p1@ID2!0.73!698.11!ID2;;chr16:54320158..54320200,-!p5@IRX3!0.73!6.59!IRX3;;chr19:50435736..50435781,+!p3@ATF5!0.73!6.26!ATF5;;chr1:23885981..23886002,-!p1@ID3!0.72!848.59!ID3;;chr8:48650715..48650735,-!p1@CEBPD!0.72!611.50!CEBPD;;chr17:46126136..46126152,+!p1@NFE2L1!0.72!247.63!NFE2L1;;chr15:67458491..67458505,+!p18@SMAD3!0.72!4.28!SMAD3;;chr17:46132044..46132080,+!p4@NFE2L1!0.72!4.28!NFE2L1;;chr1:44513995..44514031,+!p1@KLF17!0.72!4.28!KLF17;;chr11:125034640..125034655,+!p1@PKNOX2!0.72!4.28!PKNOX2;;chr2:119605214..119605230,-!p1@EN1!0.72!4.28!EN1;;chr17:1959369..1959388,+!p2@HIC1!0.71!11.85!HIC1;;chr1:23696308..23696339,-!p2@ZNF436!0.71!9.55!ZNF436;;chr2:145277882..145277967,-!p3@ZEB2!0.71!7.57!ZEB2;;chr9:110250697..110250738,-!p2@KLF4!0.71!4.94!KLF4;;chr10:114710244..114710257,+!p3@TCF7L2!0.70!11.85!TCF7L2;;chr15:66994561..66994597,+!p2@SMAD6!0.70!10.54!SMAD6;;chr8:72756063..72756125,-!p1@MSC!0.70!8.89!MSC;;chr11:706938..707008,-!p3@DEAF1!0.70!5.27!DEAF1;;chr2:85980919..85980942,+!p4@ATOH8!0.70!4.28!ATOH8;;chr6:144329384..144329405,-!p1@PLAGL1!0.69!51.37!PLAGL1;;chr9:4300050..4300118,-!p1@GLIS3!0.69!28.65!GLIS3;;chr4:26323764..26323821,+!p15@RBPJ!0.69!3.95!RBPJ;;chr1:170632439..170632465,+!p11@PRRX1!0.69!3.95!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.69!3.95!PRRX1;;chr6:1612300..1612324,+!p3@FOXC1!0.69!3.95!FOXC1;;chr8:72756380..72756427,-!p8@MSC!0.69!3.95!MSC;;chr15:66995062..66995065,+!p8@SMAD6!0.69!3.95!SMAD6;;chr10:77161504..77161530,-!p1@ZNF503!0.68!58.61!ZNF503;;chr7:17338266..17338282,+!p1@AHR!0.68!46.76!AHR;;chr3:69788576..69788648,+!p1@MITF!0.68!23.05!MITF;;chr19:45504688..45504782,+!p1@RELB!0.67!25.69!RELB;;chr18:19749386..19749404,+!p2@GATA6!0.67!5.60!GATA6;;chr9:16870659..16870675,-!p2@BNC2!0.67!4.61!BNC2;;chr4:38665883..38665922,+!p3@KLF3!0.66!15.15!KLF3;;chr1:158979872..158979898,+!p3@IFI16!0.66!12.51!IFI16;;chr10:63809090..63809097,+!p7@ARID5B!0.66!5.27!ARID5B;;chr19:13136130..13136165,+!p6@NFIX!0.66!4.94!NFIX;;chr3:71179785..71179810,-!p23@FOXP1!0.66!3.95!FOXP1;;chr6:1612248..1612281,+!p2@FOXC1!0.66!3.95!FOXC1;;chr7:15726243..15726293,-!p2@MEOX2!0.66!3.62!MEOX2;;chr10:114886551..114886601,+!p11@TCF7L2!0.66!3.62!TCF7L2;;chr12:53625846..53625861,-!p6@RARG!0.66!3.62!RARG;;chr14:37131058..37131139,+!p1@PAX9!0.66!3.62!PAX9;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!0.66!3.62!SMARCE1;;chr1:170633021..170633028,+!p27@PRRX1!0.66!3.62!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.66!3.62!ZFY;;chr6:19837592..19837621,+!p1@ID4!0.64!24.04!ID4;;chr5:321810..321877,+!p1@AHRR!0.64!12.18!AHRR;;chr15:66994663..66994680,+!p1@SMAD6!0.64!8.89!SMAD6;;chr2:28618532..28618610,+!p4@FOSL2!0.64!6.26!FOSL2;;chr6:1389789..1389821,+!p1@FOXF2!0.64!4.94!FOXF2;;chr14:61116168..61116180,-!p2@SIX1!0.64!3.95!SIX1;;chr3:178789522..178789564,-!p2@ZMAT3!0.63!27.99!ZMAT3;;chr9:102584262..102584276,+!p1@NR4A3!0.63!8.23!NR4A3;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.63!5.93!MEIS3P1;;chr19:13136241..13136258,+!p7@NFIX!0.63!4.61!NFIX;;chr14:95236440..95236465,-!p1@GSC!0.63!3.29!GSC;;chr7:27205106..27205134,-!p2@HOXA9!0.63!3.29!HOXA9;;chr7:27205136..27205164,-!p1@HOXA9!0.63!3.29!HOXA9;;chr8:77593750..77593757,+!p3@ZFHX4!0.63!3.29!ZFHX4;;chr10:63853479..63853496,+!p21@ARID5B!0.63!3.29!ARID5B;;chr12:54380404..54380433,+!p3@HOXC10!0.63!3.29!HOXC10;;chr19:56154958..56155027,+!p1@ZNF581!0.62!124.47!ZNF581;;chr22:38598086..38598105,+!p1@MAFF!0.62!39.84!MAFF;;chr6:144289132..144289134,-!p3@PLAGL1!0.62!8.23!PLAGL1;;chr18:3449720..3449749,+!p2@TGIF1!0.62!7.57!TGIF1;;chr16:54964740..54964789,+!p1@IRX5!0.62!4.94!IRX5;;chr3:21792585..21792625,-!p2@ZNF385D!0.62!3.62!ZNF385D;;chr3:71114066..71114114,-!p1@FOXP1!0.61!76.40!FOXP1;;chr17:1958388..1958404,+!p1@HIC1!0.61!23.38!HIC1;;chr11:65687362..65687436,+!p3@DRAP1!0.61!16.46!DRAP1;;chr3:71007886..71007887,-!p8@FOXP1!0.61!11.53!FOXP1;;chr15:67358163..67358192,+!p1@SMAD3!0.60!84.30!SMAD3;;chr4:4861385..4861398,+!p1@MSX1!0.60!10.21!MSX1;;chr2:45236579..45236596,-!p2@SIX2!0.60!2.96!SIX2;;chr6:85474198..85474212,-!p3@TBX18!0.60!2.96!TBX18;;chr16:67198633..67198671,+!p1@HSF4!0.60!2.96!HSF4;;chr10:63816978..63816993,+!p12@ARID5B!0.60!2.96!ARID5B;;chr12:54379029..54379057,+!p2@HOXC10!0.60!2.96!HOXC10;;chr12:54394309..54394336,+!p2@HOXC9!0.60!2.96!HOXC9;;chr11:65686732..6568675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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000214;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000982;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914
|ffid_belonging_in_development=CL:0000134,CL:0000222
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|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
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|fonse_treatment_closure=
|fonse_treatment_closure=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor3.CNhs12050.11440-118H9.hg19.ctss.bed.gz
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|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor3.CNhs12050.11440-118H9.hg38.nobarcode.ctss.bed.gz
|id=FF:11440-118H9
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|library_id=CNhs12050
|library_id_phase_based=2:CNhs12050
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11440
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GGCTAC.11440
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11440
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GGCTAC.11440
|name=Synoviocyte, donor3
|namespace=FANTOM5
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|rna_box=118
|rna_catalog_number=CA408-R10a
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=2540
|rna_od260/230=
|rna_od260/280=
|rna_position=H9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=118H9
|rna_weight_ug=10
|rnaseq_library_id=SRhi10004.GGCTAC
|sample_age=61
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=synovial cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=61 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.90805336776443e-225!GO:0005737;cytoplasm;6.97663314470178e-176!GO:0043226;organelle;1.01923430057422e-144!GO:0043229;intracellular organelle;3.3208882611011e-144!GO:0043231;intracellular membrane-bound organelle;1.86116158746851e-142!GO:0043227;membrane-bound organelle;2.82573554080848e-142!GO:0044444;cytoplasmic part;5.04745269847799e-138!GO:0044422;organelle part;5.7377517253608e-103!GO:0044446;intracellular organelle part;1.29075285689306e-101!GO:0032991;macromolecular complex;1.84569154416633e-69!GO:0030529;ribonucleoprotein complex;2.28242055626488e-69!GO:0005515;protein binding;2.62847098471717e-68!GO:0044237;cellular metabolic process;2.98772330659406e-66!GO:0044238;primary metabolic process;8.51597437322294e-66!GO:0043170;macromolecule metabolic process;3.39460628341999e-60!GO:0005739;mitochondrion;5.57618074960554e-60!GO:0043233;organelle lumen;3.81171116752088e-53!GO:0031974;membrane-enclosed lumen;3.81171116752088e-53!GO:0003723;RNA binding;7.19757046775496e-51!GO:0031090;organelle membrane;1.99175883784913e-48!GO:0019538;protein metabolic process;1.26047236456839e-47!GO:0005840;ribosome;4.01614497372516e-46!GO:0044428;nuclear part;2.10506217282957e-44!GO:0006412;translation;2.09600758916914e-42!GO:0044260;cellular macromolecule metabolic process;3.26923520231079e-42!GO:0003735;structural constituent of ribosome;2.15395341586898e-41!GO:0044267;cellular protein metabolic process;1.00370515873856e-40!GO:0044429;mitochondrial part;1.33096921525169e-39!GO:0005829;cytosol;1.51582887972817e-39!GO:0015031;protein transport;1.51582887972817e-39!GO:0005634;nucleus;1.80844168815035e-39!GO:0033036;macromolecule localization;3.60118664077299e-38!GO:0033279;ribosomal subunit;1.27587628591222e-37!GO:0045184;establishment of protein localization;2.21935345613412e-37!GO:0008104;protein localization;3.17166726987326e-36!GO:0016043;cellular component organization and biogenesis;3.63591495211823e-36!GO:0009058;biosynthetic process;3.59815706291044e-35!GO:0009059;macromolecule biosynthetic process;8.02826590874654e-35!GO:0043234;protein complex;4.36223336600285e-33!GO:0044249;cellular biosynthetic process;6.63200875578728e-33!GO:0031967;organelle envelope;2.32267830936553e-31!GO:0006396;RNA processing;3.61431202530807e-31!GO:0031975;envelope;5.07435839080181e-31!GO:0031981;nuclear lumen;4.55319037834712e-28!GO:0046907;intracellular transport;6.89745793485921e-28!GO:0016071;mRNA metabolic process;1.07165000406911e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.07165000406911e-27!GO:0005740;mitochondrial envelope;2.63506330410165e-26!GO:0008380;RNA splicing;1.58977093559047e-25!GO:0010467;gene expression;1.71634113254065e-25!GO:0006886;intracellular protein transport;1.91485246214351e-25!GO:0031966;mitochondrial membrane;4.67539418958412e-25!GO:0043283;biopolymer metabolic process;1.31698841921225e-24!GO:0019866;organelle inner membrane;2.18573335355875e-24!GO:0005783;endoplasmic reticulum;8.44211108472822e-24!GO:0065003;macromolecular complex assembly;1.9131798938036e-23!GO:0006397;mRNA processing;3.46301321878318e-23!GO:0005743;mitochondrial inner membrane;3.8079304143017e-23!GO:0022607;cellular component assembly;8.3149852842307e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.45987080645436e-21!GO:0006119;oxidative phosphorylation;2.10125463540886e-21!GO:0044445;cytosolic part;1.02058889019029e-20!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.36595177557127e-19!GO:0015934;large ribosomal subunit;1.96801941775739e-19!GO:0015935;small ribosomal subunit;3.11200447299064e-19!GO:0044455;mitochondrial membrane part;5.49248074983037e-19!GO:0006457;protein folding;1.24959823028855e-18!GO:0012505;endomembrane system;1.31113377130103e-18!GO:0043228;non-membrane-bound organelle;8.22295316644512e-18!GO:0043232;intracellular non-membrane-bound organelle;8.22295316644512e-18!GO:0005681;spliceosome;1.27324128121152e-17!GO:0044432;endoplasmic reticulum part;2.06669912086436e-17!GO:0005794;Golgi apparatus;2.12426652857738e-17!GO:0005654;nucleoplasm;5.22321833346869e-17!GO:0005746;mitochondrial respiratory chain;5.47740831336463e-17!GO:0051649;establishment of cellular localization;8.38341719159607e-17!GO:0051641;cellular localization;8.46812978654593e-17!GO:0006996;organelle organization and biogenesis;9.44419262222435e-17!GO:0048770;pigment granule;2.36741491764743e-16!GO:0042470;melanosome;2.36741491764743e-16!GO:0031980;mitochondrial lumen;4.79532648727402e-16!GO:0005759;mitochondrial matrix;4.79532648727402e-16!GO:0022618;protein-RNA complex assembly;7.39003343961213e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.11028971368395e-15!GO:0000502;proteasome complex (sensu Eukaryota);4.27244891345611e-15!GO:0008134;transcription factor binding;4.53961377335821e-15!GO:0051186;cofactor metabolic process;6.70767246002125e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.0660483660423e-14!GO:0003954;NADH dehydrogenase activity;1.0660483660423e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.0660483660423e-14!GO:0006512;ubiquitin cycle;1.0755112151778e-14!GO:0044265;cellular macromolecule catabolic process;1.93267100687211e-14!GO:0016874;ligase activity;2.94216701153209e-14!GO:0043285;biopolymer catabolic process;3.1297887907803e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.1297887907803e-14!GO:0044451;nucleoplasm part;3.41337940424037e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.13312166760788e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.49749432462034e-14!GO:0016462;pyrophosphatase activity;4.58557780471566e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.83350930081307e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;6.83350930081307e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;8.76916005328798e-14!GO:0008135;translation factor activity, nucleic acid binding;9.59210564731653e-14!GO:0048193;Golgi vesicle transport;1.14621851106185e-13!GO:0017111;nucleoside-triphosphatase activity;1.25010602815392e-13!GO:0019941;modification-dependent protein catabolic process;1.92179185435564e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.92179185435564e-13!GO:0044257;cellular protein catabolic process;2.09313442519085e-13!GO:0006605;protein targeting;2.09313442519085e-13!GO:0005761;mitochondrial ribosome;2.9702202206895e-13!GO:0000313;organellar ribosome;2.9702202206895e-13!GO:0006511;ubiquitin-dependent protein catabolic process;3.11792412244255e-13!GO:0044248;cellular catabolic process;3.72861390031815e-13!GO:0051082;unfolded protein binding;5.13081672492178e-13!GO:0030964;NADH dehydrogenase complex (quinone);7.36486930141804e-13!GO:0045271;respiratory chain complex I;7.36486930141804e-13!GO:0005747;mitochondrial respiratory chain complex I;7.36486930141804e-13!GO:0042775;organelle ATP synthesis coupled electron transport;7.57494950449265e-13!GO:0042773;ATP synthesis coupled electron transport;7.57494950449265e-13!GO:0009057;macromolecule catabolic process;7.80974068814702e-13!GO:0005793;ER-Golgi intermediate compartment;1.05504243940895e-12!GO:0016192;vesicle-mediated transport;1.8548605434722e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.19150975855135e-12!GO:0005730;nucleolus;2.92652769231237e-12!GO:0030163;protein catabolic process;3.63354435937658e-12!GO:0000166;nucleotide binding;3.88583380436277e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.41681394495624e-12!GO:0006732;coenzyme metabolic process;1.0535520906704e-11!GO:0012501;programmed cell death;1.30567721374665e-11!GO:0005789;endoplasmic reticulum membrane;1.45350906839514e-11!GO:0009055;electron carrier activity;1.49833355826572e-11!GO:0006915;apoptosis;2.43439062485254e-11!GO:0006413;translational initiation;9.19336875505466e-11!GO:0003676;nucleic acid binding;9.4457096433746e-11!GO:0006259;DNA metabolic process;1.16371066952344e-10!GO:0016491;oxidoreductase activity;1.18344796358445e-10!GO:0003743;translation initiation factor activity;1.29026400805975e-10!GO:0008219;cell death;2.35955342107801e-10!GO:0016265;death;2.35955342107801e-10!GO:0048523;negative regulation of cellular process;4.65895108767985e-10!GO:0006446;regulation of translational initiation;5.67548015661439e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.39685386279085e-09!GO:0000375;RNA splicing, via transesterification reactions;1.39685386279085e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.39685386279085e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.54013627272899e-09!GO:0043412;biopolymer modification;3.28664557920014e-09!GO:0003712;transcription cofactor activity;7.99106969623385e-09!GO:0008639;small protein conjugating enzyme activity;8.77667416663554e-09!GO:0016070;RNA metabolic process;9.19575144256879e-09!GO:0005773;vacuole;1.0156505200888e-08!GO:0005788;endoplasmic reticulum lumen;1.09324039525917e-08!GO:0009150;purine ribonucleotide metabolic process;1.09324039525917e-08!GO:0009259;ribonucleotide metabolic process;1.15098853070849e-08!GO:0005768;endosome;1.34653379454262e-08!GO:0048519;negative regulation of biological process;1.52325708493554e-08!GO:0004842;ubiquitin-protein ligase activity;1.64607959680349e-08!GO:0009060;aerobic respiration;1.68021800760287e-08!GO:0006163;purine nucleotide metabolic process;1.80977013394003e-08!GO:0006464;protein modification process;1.95050973696032e-08!GO:0009056;catabolic process;1.96221709840592e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.01898334719001e-08!GO:0019787;small conjugating protein ligase activity;2.11858502608715e-08!GO:0045333;cellular respiration;2.24916626129198e-08!GO:0006461;protein complex assembly;2.26718645830322e-08!GO:0017076;purine nucleotide binding;3.12845345782356e-08!GO:0007049;cell cycle;5.8443262886299e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.8443262886299e-08!GO:0015986;ATP synthesis coupled proton transport;6.38406212692625e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.38406212692625e-08!GO:0006913;nucleocytoplasmic transport;6.72640453194099e-08!GO:0030120;vesicle coat;7.06049942823656e-08!GO:0030662;coated vesicle membrane;7.06049942823656e-08!GO:0017038;protein import;7.37451272517898e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.56512380231878e-08!GO:0009144;purine nucleoside triphosphate metabolic process;7.56512380231878e-08!GO:0016604;nuclear body;8.18115393126789e-08!GO:0009199;ribonucleoside triphosphate metabolic process;8.94482786264549e-08!GO:0006164;purine nucleotide biosynthetic process;9.81910549553861e-08!GO:0032553;ribonucleotide binding;9.81910549553861e-08!GO:0032555;purine ribonucleotide binding;9.81910549553861e-08!GO:0051169;nuclear transport;1.17118040116077e-07!GO:0044431;Golgi apparatus part;1.26745052126176e-07!GO:0009260;ribonucleotide biosynthetic process;1.27686811406476e-07!GO:0000323;lytic vacuole;1.27719947501626e-07!GO:0005764;lysosome;1.27719947501626e-07!GO:0009141;nucleoside triphosphate metabolic process;1.34227268134734e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.4395351327076e-07!GO:0042981;regulation of apoptosis;1.4395351327076e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.4395351327076e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.46487723340058e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.54716293378141e-07!GO:0043067;regulation of programmed cell death;1.62524674584571e-07!GO:0019829;cation-transporting ATPase activity;1.74350916920675e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.75928729046703e-07!GO:0008565;protein transporter activity;1.80667105250654e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.95675766706602e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.04968195129606e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.04968195129606e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.51505737657478e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.51505737657478e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.60202436096725e-07!GO:0006091;generation of precursor metabolites and energy;3.20677840176474e-07!GO:0016881;acid-amino acid ligase activity;3.33806598676328e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.03928263436339e-07!GO:0046034;ATP metabolic process;4.24872101639804e-07!GO:0003924;GTPase activity;4.29314900045217e-07!GO:0006099;tricarboxylic acid cycle;5.39317429943184e-07!GO:0046356;acetyl-CoA catabolic process;5.39317429943184e-07!GO:0004298;threonine endopeptidase activity;5.39317429943184e-07!GO:0051188;cofactor biosynthetic process;6.03578959491577e-07!GO:0051187;cofactor catabolic process;6.23628414141044e-07!GO:0048475;coated membrane;6.24535911056543e-07!GO:0030117;membrane coat;6.24535911056543e-07!GO:0042254;ribosome biogenesis and assembly;6.39748945507735e-07!GO:0043687;post-translational protein modification;6.40995901161567e-07!GO:0006974;response to DNA damage stimulus;6.79062477491344e-07!GO:0008361;regulation of cell size;7.94329492244242e-07!GO:0051246;regulation of protein metabolic process;9.27784884236547e-07!GO:0016049;cell growth;9.49479610947809e-07!GO:0006366;transcription from RNA polymerase II promoter;9.49479610947809e-07!GO:0006754;ATP biosynthetic process;9.86860213671495e-07!GO:0006753;nucleoside phosphate metabolic process;9.86860213671495e-07!GO:0016887;ATPase activity;1.05350710607936e-06!GO:0044440;endosomal part;1.11013397514909e-06!GO:0010008;endosome membrane;1.11013397514909e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.20663752760086e-06!GO:0009109;coenzyme catabolic process;1.21031789159862e-06!GO:0005635;nuclear envelope;1.40676619150068e-06!GO:0042623;ATPase activity, coupled;1.69052428772358e-06!GO:0031965;nuclear membrane;1.95829049461035e-06!GO:0051789;response to protein stimulus;2.09498282235682e-06!GO:0006986;response to unfolded protein;2.09498282235682e-06!GO:0006084;acetyl-CoA metabolic process;2.11077935086572e-06!GO:0043069;negative regulation of programmed cell death;2.30286630418335e-06!GO:0043066;negative regulation of apoptosis;2.60561810065296e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.93094410923777e-06!GO:0001558;regulation of cell growth;3.04928316716693e-06!GO:0006399;tRNA metabolic process;3.17478444257504e-06!GO:0009117;nucleotide metabolic process;3.24536383357957e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.71821050244309e-06!GO:0004812;aminoacyl-tRNA ligase activity;4.71821050244309e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.71821050244309e-06!GO:0016607;nuclear speck;5.41842389623761e-06!GO:0045786;negative regulation of progression through cell cycle;6.2610827055128e-06!GO:0045259;proton-transporting ATP synthase complex;6.50412135400907e-06!GO:0050794;regulation of cellular process;6.54790781607172e-06!GO:0006916;anti-apoptosis;8.05334184362541e-06!GO:0043038;amino acid activation;8.45117749886074e-06!GO:0006418;tRNA aminoacylation for protein translation;8.45117749886074e-06!GO:0043039;tRNA aminoacylation;8.45117749886074e-06!GO:0022402;cell cycle process;8.78660063915025e-06!GO:0005770;late endosome;9.2776316567708e-06!GO:0000139;Golgi membrane;1.02862648776226e-05!GO:0044453;nuclear membrane part;1.22000486816547e-05!GO:0016787;hydrolase activity;1.29156707085294e-05!GO:0008654;phospholipid biosynthetic process;1.32943657222147e-05!GO:0016564;transcription repressor activity;1.33386585007849e-05!GO:0031988;membrane-bound vesicle;1.50192475804774e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.54819946813398e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.54819946813398e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.59311319228688e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.64773461373767e-05!GO:0005798;Golgi-associated vesicle;1.72563138848471e-05!GO:0009108;coenzyme biosynthetic process;1.84035700609069e-05!GO:0003714;transcription corepressor activity;1.85830044587774e-05!GO:0030554;adenyl nucleotide binding;1.8704730871782e-05!GO:0005762;mitochondrial large ribosomal subunit;1.90612149049581e-05!GO:0000315;organellar large ribosomal subunit;1.90612149049581e-05!GO:0031324;negative regulation of cellular metabolic process;1.90670161853711e-05!GO:0051726;regulation of cell cycle;2.04701894126612e-05!GO:0005525;GTP binding;2.04810734444612e-05!GO:0019843;rRNA binding;2.2917117020159e-05!GO:0000151;ubiquitin ligase complex;2.32743176779159e-05!GO:0051170;nuclear import;2.39874245468253e-05!GO:0006281;DNA repair;2.52230271138412e-05!GO:0000074;regulation of progression through cell cycle;2.52694960602008e-05!GO:0009719;response to endogenous stimulus;2.55206062343023e-05!GO:0007005;mitochondrion organization and biogenesis;2.70524133707094e-05!GO:0008026;ATP-dependent helicase activity;2.90985648502594e-05!GO:0006752;group transfer coenzyme metabolic process;2.93555628416009e-05!GO:0006606;protein import into nucleus;3.05010574726175e-05!GO:0000245;spliceosome assembly;3.53164494151764e-05!GO:0005524;ATP binding;3.73057677818327e-05!GO:0031982;vesicle;3.73317611707072e-05!GO:0032559;adenyl ribonucleotide binding;4.33159335641492e-05!GO:0006613;cotranslational protein targeting to membrane;5.06494309342189e-05!GO:0032446;protein modification by small protein conjugation;5.42773965639852e-05!GO:0031410;cytoplasmic vesicle;5.61623621186191e-05!GO:0005791;rough endoplasmic reticulum;5.7231963713717e-05!GO:0005769;early endosome;6.07962858396267e-05!GO:0031252;leading edge;6.18226131526333e-05!GO:0016567;protein ubiquitination;6.33830490916977e-05!GO:0044262;cellular carbohydrate metabolic process;6.48608846367647e-05!GO:0016853;isomerase activity;7.10156411224906e-05!GO:0065002;intracellular protein transport across a membrane;7.22029638313465e-05!GO:0048522;positive regulation of cellular process;7.44264605123099e-05!GO:0004386;helicase activity;7.60903622852131e-05!GO:0003697;single-stranded DNA binding;7.77828683063043e-05!GO:0030133;transport vesicle;8.93562686879776e-05!GO:0043566;structure-specific DNA binding;0.000105708182751427!GO:0030029;actin filament-based process;0.000120393195147811!GO:0005905;coated pit;0.000122952120378999!GO:0009892;negative regulation of metabolic process;0.000136490643215877!GO:0045454;cell redox homeostasis;0.000146498307372597!GO:0046474;glycerophospholipid biosynthetic process;0.000156634389777069!GO:0033116;ER-Golgi intermediate compartment membrane;0.000165422971509246!GO:0040008;regulation of growth;0.000167320729329727!GO:0007243;protein kinase cascade;0.000175517940641302!GO:0032561;guanyl ribonucleotide binding;0.000210339321486165!GO:0019001;guanyl nucleotide binding;0.000210339321486165!GO:0005643;nuclear pore;0.000214633117194102!GO:0030867;rough endoplasmic reticulum membrane;0.000228606512478466!GO:0005667;transcription factor complex;0.000240862959233803!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000263413746825337!GO:0016859;cis-trans isomerase activity;0.00027220883317939!GO:0005048;signal sequence binding;0.000282609724327625!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000284444469794382!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000284444469794382!GO:0006364;rRNA processing;0.000302818547011535!GO:0050789;regulation of biological process;0.000306663521343949!GO:0006612;protein targeting to membrane;0.000334269408800348!GO:0000314;organellar small ribosomal subunit;0.000336970052058939!GO:0005763;mitochondrial small ribosomal subunit;0.000336970052058939!GO:0016072;rRNA metabolic process;0.000360532564327977!GO:0016481;negative regulation of transcription;0.000360532564327977!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0003726352806123!GO:0043021;ribonucleoprotein binding;0.000487078559716047!GO:0006323;DNA packaging;0.000689776580541376!GO:0003713;transcription coactivator activity;0.000717071573356635!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000725247500530862!GO:0046930;pore complex;0.000820152037629427!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000820152037629427!GO:0030663;COPI coated vesicle membrane;0.000834127601707067!GO:0030126;COPI vesicle coat;0.000834127601707067!GO:0043623;cellular protein complex assembly;0.00085041105700801!GO:0007264;small GTPase mediated signal transduction;0.000971746952815817!GO:0031968;organelle outer membrane;0.00105111021486046!GO:0000278;mitotic cell cycle;0.00105569753683368!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0010621672834391!GO:0019867;outer membrane;0.001064110196855!GO:0006793;phosphorus metabolic process;0.00114329186186666!GO:0006796;phosphate metabolic process;0.00114329186186666!GO:0051920;peroxiredoxin activity;0.00115715632024486!GO:0016779;nucleotidyltransferase activity;0.00117710645284857!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00119705243118199!GO:0003724;RNA helicase activity;0.0012273661880502!GO:0005741;mitochondrial outer membrane;0.00130287103032823!GO:0016044;membrane organization and biogenesis;0.00130287103032823!GO:0004576;oligosaccharyl transferase activity;0.00130287103032823!GO:0046489;phosphoinositide biosynthetic process;0.0013974607729849!GO:0005885;Arp2/3 protein complex;0.00142426092333216!GO:0009967;positive regulation of signal transduction;0.00142585308259652!GO:0050657;nucleic acid transport;0.00148499878749989!GO:0051236;establishment of RNA localization;0.00148499878749989!GO:0050658;RNA transport;0.00148499878749989!GO:0030137;COPI-coated vesicle;0.00152826616078763!GO:0016563;transcription activator activity;0.0015321434500044!GO:0008250;oligosaccharyl transferase complex;0.00156492944545998!GO:0030132;clathrin coat of coated pit;0.00159324521298215!GO:0048518;positive regulation of biological process;0.00168950919270226!GO:0006403;RNA localization;0.0018243978597591!GO:0016310;phosphorylation;0.00192310104710345!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00195601739475242!GO:0051287;NAD binding;0.00195601739475242!GO:0006979;response to oxidative stress;0.00196454272769998!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00197932668830409!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00197932668830409!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00197932668830409!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00197932668830409!GO:0043681;protein import into mitochondrion;0.00202479541886635!GO:0008154;actin polymerization and/or depolymerization;0.00209173358582767!GO:0051252;regulation of RNA metabolic process;0.00211978114420459!GO:0016740;transferase activity;0.00213373395225418!GO:0005813;centrosome;0.00213587914293914!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00214156701113261!GO:0004177;aminopeptidase activity;0.00214667213698557!GO:0046467;membrane lipid biosynthetic process;0.00219102268440977!GO:0006118;electron transport;0.00238101221244815!GO:0051427;hormone receptor binding;0.0023847611280263!GO:0051276;chromosome organization and biogenesis;0.00239011187574486!GO:0043488;regulation of mRNA stability;0.00270398970264249!GO:0043487;regulation of RNA stability;0.00270398970264249!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00275808234832988!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00288690571453897!GO:0015002;heme-copper terminal oxidase activity;0.00288690571453897!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00288690571453897!GO:0004129;cytochrome-c oxidase activity;0.00288690571453897!GO:0065004;protein-DNA complex assembly;0.00300689920961872!GO:0050662;coenzyme binding;0.00301449223841792!GO:0030041;actin filament polymerization;0.00317209461833059!GO:0009165;nucleotide biosynthetic process;0.00320025463872728!GO:0006509;membrane protein ectodomain proteolysis;0.00326731322228653!GO:0033619;membrane protein proteolysis;0.00326731322228653!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0034752403264629!GO:0015399;primary active transmembrane transporter activity;0.0034752403264629!GO:0006260;DNA replication;0.0034752403264629!GO:0016197;endosome transport;0.00348536811110163!GO:0006950;response to stress;0.00348536811110163!GO:0016568;chromatin modification;0.00355859935433626!GO:0006414;translational elongation;0.00383434497572377!GO:0022890;inorganic cation transmembrane transporter activity;0.00384494801845479!GO:0001872;zymosan binding;0.00384494801845479!GO:0001878;response to yeast;0.00384494801845479!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00390295397108323!GO:0006891;intra-Golgi vesicle-mediated transport;0.00393354270803334!GO:0005815;microtubule organizing center;0.00394291864723252!GO:0003729;mRNA binding;0.00395209984077148!GO:0006650;glycerophospholipid metabolic process;0.00395916797242957!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00412707765043833!GO:0035257;nuclear hormone receptor binding;0.00421109753809223!GO:0043065;positive regulation of apoptosis;0.00427301981813669!GO:0008092;cytoskeletal protein binding;0.00433270901804252!GO:0048500;signal recognition particle;0.00442416665213723!GO:0031901;early endosome membrane;0.00444498584543159!GO:0003899;DNA-directed RNA polymerase activity;0.00448398581061951!GO:0019752;carboxylic acid metabolic process;0.00451050334571442!GO:0030658;transport vesicle membrane;0.00457205844329977!GO:0043068;positive regulation of programmed cell death;0.00469184066052458!GO:0043284;biopolymer biosynthetic process;0.00472759981494661!GO:0003746;translation elongation factor activity;0.00475245088741813!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0047978880657232!GO:0018196;peptidyl-asparagine modification;0.0047978880657232!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0047978880657232!GO:0030118;clathrin coat;0.00494041283700089!GO:0006082;organic acid metabolic process;0.0049482114594632!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00503239912878225!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00508038917849289!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00529706780580183!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00534680737837146!GO:0006333;chromatin assembly or disassembly;0.00550344903637109!GO:0030145;manganese ion binding;0.00550386714584161!GO:0005520;insulin-like growth factor binding;0.00563972880484524!GO:0007050;cell cycle arrest;0.00572543566878779!GO:0048487;beta-tubulin binding;0.00593156834708302!GO:0006818;hydrogen transport;0.00639600713489292!GO:0046483;heterocycle metabolic process;0.00654533365713254!GO:0001726;ruffle;0.00690588261075927!GO:0015992;proton transport;0.00696999610522327!GO:0015630;microtubule cytoskeleton;0.00713304899138205!GO:0019899;enzyme binding;0.0072276839546246!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00742468855876543!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00742468855876543!GO:0048468;cell development;0.00750923250137183!GO:0031072;heat shock protein binding;0.00774769689007867!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00791528920541543!GO:0005869;dynactin complex;0.00796186115449726!GO:0008610;lipid biosynthetic process;0.00796186115449726!GO:0051128;regulation of cellular component organization and biogenesis;0.00805866039239528!GO:0007040;lysosome organization and biogenesis;0.00842895933393087!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00860344228637666!GO:0045047;protein targeting to ER;0.00860344228637666!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00887653834988495!GO:0030659;cytoplasmic vesicle membrane;0.00887653834988495!GO:0006626;protein targeting to mitochondrion;0.00890594084149238!GO:0006354;RNA elongation;0.00899950201186759!GO:0017166;vinculin binding;0.00907602796312886!GO:0006402;mRNA catabolic process;0.00924193383310801!GO:0030660;Golgi-associated vesicle membrane;0.00978838754574762!GO:0007033;vacuole organization and biogenesis;0.00997863819911049!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00998145985284543!GO:0006506;GPI anchor biosynthetic process;0.00998145985284543!GO:0006740;NADPH regeneration;0.0103663270788148!GO:0006098;pentose-phosphate shunt;0.0103663270788148!GO:0051028;mRNA transport;0.0104171346258067!GO:0030176;integral to endoplasmic reticulum membrane;0.0104171346258067!GO:0006383;transcription from RNA polymerase III promoter;0.0104234439531709!GO:0006892;post-Golgi vesicle-mediated transport;0.0105857237641109!GO:0005774;vacuolar membrane;0.0106751887350063!GO:0007010;cytoskeleton organization and biogenesis;0.0107503123284534!GO:0008139;nuclear localization sequence binding;0.0108173009032!GO:0003690;double-stranded DNA binding;0.0109398523399291!GO:0051540;metal cluster binding;0.0110045249716242!GO:0051536;iron-sulfur cluster binding;0.0110045249716242!GO:0030880;RNA polymerase complex;0.0112095556767852!GO:0030125;clathrin vesicle coat;0.0113042233360439!GO:0030665;clathrin coated vesicle membrane;0.0113042233360439!GO:0003711;transcription elongation regulator activity;0.0113612464735885!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0114449533794569!GO:0030027;lamellipodium;0.011609254168998!GO:0051059;NF-kappaB binding;0.0118681743921571!GO:0031902;late endosome membrane;0.0118681743921571!GO:0045892;negative regulation of transcription, DNA-dependent;0.0119223333232697!GO:0048471;perinuclear region of cytoplasm;0.011977945883938!GO:0008186;RNA-dependent ATPase activity;0.0120081273974521!GO:0051087;chaperone binding;0.0120617708395903!GO:0005694;chromosome;0.0121136917434504!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0121198547812978!GO:0008312;7S RNA binding;0.012343021289992!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0125088589541881!GO:0030134;ER to Golgi transport vesicle;0.0128354209627051!GO:0006505;GPI anchor metabolic process;0.0130439408564779!GO:0006497;protein amino acid lipidation;0.0130439408564779!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0131972383998018!GO:0033043;regulation of organelle organization and biogenesis;0.0131972383998018!GO:0030127;COPII vesicle coat;0.0142638942957544!GO:0012507;ER to Golgi transport vesicle membrane;0.0142638942957544!GO:0044433;cytoplasmic vesicle part;0.0146575417440363!GO:0030384;phosphoinositide metabolic process;0.0148589208340263!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0149785396704854!GO:0043492;ATPase activity, coupled to movement of substances;0.0150463084990531!GO:0006595;polyamine metabolic process;0.0152749016228697!GO:0000785;chromatin;0.0152749016228697!GO:0007006;mitochondrial membrane organization and biogenesis;0.0153523843987173!GO:0051329;interphase of mitotic cell cycle;0.0153550094257995!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0155580842578863!GO:0043433;negative regulation of transcription factor activity;0.0156240710365307!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0158336928663641!GO:0030119;AP-type membrane coat adaptor complex;0.0158336928663641!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0159646191127395!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0159646191127395!GO:0006839;mitochondrial transport;0.0163011550255741!GO:0030833;regulation of actin filament polymerization;0.0163011550255741!GO:0008632;apoptotic program;0.0164475473120539!GO:0006917;induction of apoptosis;0.0168128934079869!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0172419981027514!GO:0006693;prostaglandin metabolic process;0.0179129065824557!GO:0006692;prostanoid metabolic process;0.0179129065824557!GO:0008180;signalosome;0.0180566883713571!GO:0042802;identical protein binding;0.018190228952903!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0186901204260696!GO:0051325;interphase;0.0192415932075258!GO:0016860;intramolecular oxidoreductase activity;0.0192952835828656!GO:0030032;lamellipodium biogenesis;0.0194569363954761!GO:0008383;manganese superoxide dismutase activity;0.0195095603926083!GO:0001315;age-dependent response to reactive oxygen species;0.0195095603926083!GO:0048037;cofactor binding;0.0195749997192152!GO:0045792;negative regulation of cell size;0.0195906558419841!GO:0042158;lipoprotein biosynthetic process;0.0196438866062625!GO:0012502;induction of programmed cell death;0.0196438866062625!GO:0035035;histone acetyltransferase binding;0.0199900956777784!GO:0006643;membrane lipid metabolic process;0.020664114173996!GO:0050811;GABA receptor binding;0.0207470126988441!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0212480088894411!GO:0000428;DNA-directed RNA polymerase complex;0.0212480088894411!GO:0030308;negative regulation of cell growth;0.0213004178604705!GO:0000049;tRNA binding;0.0213004178604705!GO:0001527;microfibril;0.0215330952449618!GO:0031529;ruffle organization and biogenesis;0.0215347921171136!GO:0006289;nucleotide-excision repair;0.0216628527332647!GO:0006401;RNA catabolic process;0.0217630237398755!GO:0051101;regulation of DNA binding;0.022608226604663!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0236388340782006!GO:0044437;vacuolar part;0.0241556979198687!GO:0012506;vesicle membrane;0.0242878713895386!GO:0065007;biological regulation;0.0243036829659703!GO:0006790;sulfur metabolic process;0.0243036829659703!GO:0006778;porphyrin metabolic process;0.0243036829659703!GO:0033013;tetrapyrrole metabolic process;0.0243036829659703!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0243119404818121!GO:0051168;nuclear export;0.0243956508260555!GO:0043022;ribosome binding;0.0246844408511118!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0252176019023268!GO:0005765;lysosomal membrane;0.0256802604897166!GO:0031543;peptidyl-proline dioxygenase activity;0.0259002630141418!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0259484057195663!GO:0003756;protein disulfide isomerase activity;0.0259484057195663!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0259484057195663!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0261817471516738!GO:0004228;gelatinase A activity;0.0262015333615014!GO:0001955;blood vessel maturation;0.0262015333615014!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0265097838442873!GO:0004784;superoxide dismutase activity;0.0265097838442873!GO:0004004;ATP-dependent RNA helicase activity;0.0267310211976254!GO:0005684;U2-dependent spliceosome;0.0268340540551847!GO:0030521;androgen receptor signaling pathway;0.0274664354218412!GO:0007021;tubulin folding;0.028637865259508!GO:0007034;vacuolar transport;0.0289970080168557!GO:0030131;clathrin adaptor complex;0.0289970080168557!GO:0006897;endocytosis;0.0291973751979926!GO:0010324;membrane invagination;0.0291973751979926!GO:0007160;cell-matrix adhesion;0.0296534617628149!GO:0015631;tubulin binding;0.0301630663493671!GO:0045045;secretory pathway;0.0302853882216985!GO:0016408;C-acyltransferase activity;0.0315156240116659!GO:0046519;sphingoid metabolic process;0.0315197413471085!GO:0051539;4 iron, 4 sulfur cluster binding;0.0315216012806115!GO:0031625;ubiquitin protein ligase binding;0.0315216012806115!GO:0044427;chromosomal part;0.0322594645100033!GO:0031589;cell-substrate adhesion;0.0330916362028221!GO:0000339;RNA cap binding;0.0332840151796416!GO:0031272;regulation of pseudopodium formation;0.0336984966884492!GO:0031269;pseudopodium formation;0.0336984966884492!GO:0031344;regulation of cell projection organization and biogenesis;0.0336984966884492!GO:0031268;pseudopodium organization and biogenesis;0.0336984966884492!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0336984966884492!GO:0031274;positive regulation of pseudopodium formation;0.0336984966884492!GO:0051235;maintenance of localization;0.0336984966884492!GO:0008234;cysteine-type peptidase activity;0.035440635374139!GO:0006644;phospholipid metabolic process;0.0370858556602061!GO:0005862;muscle thin filament tropomyosin;0.0372772179535838!GO:0007265;Ras protein signal transduction;0.038089903943923!GO:0005777;peroxisome;0.0383398911074894!GO:0042579;microbody;0.0383398911074894!GO:0016272;prefoldin complex;0.0393098313164221!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0398192816142622!GO:0005832;chaperonin-containing T-complex;0.0402317367854763!GO:0006672;ceramide metabolic process;0.0402755040701881!GO:0003684;damaged DNA binding;0.0407857591471101!GO:0016126;sterol biosynthetic process;0.041220553534869!GO:0005795;Golgi stack;0.0412330247719278!GO:0004197;cysteine-type endopeptidase activity;0.0417501259866477!GO:0005637;nuclear inner membrane;0.0419206982659993!GO:0016363;nuclear matrix;0.0422372973835822!GO:0000209;protein polyubiquitination;0.0422785096647801!GO:0030518;steroid hormone receptor signaling pathway;0.0431528897347084!GO:0042168;heme metabolic process;0.0431528897347084!GO:0031418;L-ascorbic acid binding;0.0433534317871688!GO:0030128;clathrin coat of endocytic vesicle;0.0437076980438662!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0437076980438662!GO:0030122;AP-2 adaptor complex;0.0437076980438662!GO:0019222;regulation of metabolic process;0.0437076980438662!GO:0045185;maintenance of protein localization;0.0443515275783845!GO:0000059;protein import into nucleus, docking;0.0443978184779378!GO:0000096;sulfur amino acid metabolic process;0.0446142090898613!GO:0030911;TPR domain binding;0.0449712746082948!GO:0006635;fatty acid beta-oxidation;0.0457887266768043!GO:0045334;clathrin-coated endocytic vesicle;0.0458249286576676!GO:0032984;macromolecular complex disassembly;0.0463234496561855!GO:0019798;procollagen-proline dioxygenase activity;0.0463234496561855!GO:0009225;nucleotide-sugar metabolic process;0.0470585378451853!GO:0022415;viral reproductive process;0.0473143948444373!GO:0005975;carbohydrate metabolic process;0.0480164669495011!GO:0008022;protein C-terminus binding;0.0480342879816684!GO:0030832;regulation of actin filament length;0.0482737871593294!GO:0015036;disulfide oxidoreductase activity;0.0484195488520002!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0493642290908699!GO:0046813;virion attachment, binding of host cell surface receptor;0.0493642290908699!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0493642290908699!GO:0022408;negative regulation of cell-cell adhesion;0.0495768794150975!GO:0007030;Golgi organization and biogenesis;0.0498523492010517!GO:0005583;fibrillar collagen;0.0498941264610372
|sample_id=11440
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=synovium
|top_motifs=ALX4:2.13747548973;UFEwm:1.91376713201;EVI1:1.78011899723;KLF4:1.71235176243;ESR1:1.54583220234;FOXL1:1.5211594062;EN1,2:1.45136973316;SPZ1:1.340246889;MYBL2:1.24327680037;RXRA_VDR{dimer}:1.24067846405;NKX2-1,4:1.21573497113;ZNF238:1.20687822612;TAL1_TCF{3,4,12}:1.19125020724;GLI1..3:1.18814944437;RREB1:1.14779986723;RXR{A,B,G}:1.13518446953;FOXO1,3,4:1.12595273942;ATF6:1.1047404012;TEAD1:1.0910212661;PRDM1:1.05067212263;NKX3-1:1.04594723405;MTF1:1.0346445683;GZF1:1.03182697198;TFCP2:0.963025688891;IKZF1:0.950414783843;TLX1..3_NFIC{dimer}:0.927162964604;HSF1,2:0.900396336266;TFAP4:0.888892518147;HES1:0.869849861866;SMAD1..7,9:0.868158378846;GCM1,2:0.860655813445;PAX1,9:0.837016634299;ZNF423:0.823981539887;TEF:0.801114019548;GFI1B:0.799076230606;HOX{A4,D4}:0.776266300832;TOPORS:0.722000937329;ZIC1..3:0.713060977208;STAT2,4,6:0.693875233345;EBF1:0.674817676235;NFE2L1:0.6435839043;XBP1:0.636038396501;ESRRA:0.635347634343;NR6A1:0.620966275077;GTF2I:0.589333579744;NFATC1..3:0.586099599156;XCPE1{core}:0.583262401537;TFAP2B:0.577615824056;HMX1:0.574750884955;NKX2-2,8:0.560372551758;GATA4:0.560180918699;TP53:0.559471313776;IRF1,2:0.559432704802;HOX{A5,B5}:0.535137041008;CDX1,2,4:0.527633051787;NR1H4:0.519503125237;LHX3,4:0.493111609223;HAND1,2:0.483908056471;VSX1,2:0.482144836218;PAX5:0.459077453505;ZNF148:0.457350016944;SRF:0.399283781889;BPTF:0.375304583035;GTF2A1,2:0.360414070742;HOX{A6,A7,B6,B7}:0.34892213818;HLF:0.343369970173;TBP:0.342022442348;HIC1:0.335384205501;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.332233360196;MAFB:0.331712699041;TFAP2{A,C}:0.326537493609;FOXD3:0.308342486114;NR3C1:0.306808460552;AIRE:0.289431193777;MAZ:0.286056519851;NKX3-2:0.268399841549;ZNF384:0.234169707523;FOXM1:0.206757503518;AR:0.183658464655;TLX2:0.178135347984;YY1:0.172060713029;MYFfamily:0.150970030783;FOXP3:0.102455306971;PATZ1:0.0909669357526;ZBTB6:0.0900691478164;HIF1A:0.0789757641613;PPARG:0.0407290035467;CDC5L:0.0337622744275;RFX1:0.0260713809139;MED-1{core}:0.00874138812065;POU5F1:0.000351916471897;FOXP1:-0.00596461475085;MTE{core}:-0.0518622323812;TBX4,5:-0.0610355220875;NFKB1_REL_RELA:-0.0617013585129;PAX4:-0.0653631908811;EP300:-0.0680929289704;MZF1:-0.0778098600711;POU6F1:-0.0812697464943;MEF2{A,B,C,D}:-0.0853787737746;SOX17:-0.108742338472;REST:-0.110447979674;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.119964013603;NANOG{mouse}:-0.143707704729;ARID5B:-0.153389125932;CEBPA,B_DDIT3:-0.159189794884;NHLH1,2:-0.178796870816;FOX{I1,J2}:-0.194683208243;EGR1..3:-0.200028743196;HNF1A:-0.202687518684;AHR_ARNT_ARNT2:-0.210026543149;HNF4A_NR2F1,2:-0.25801304901;NFE2L2:-0.275026961704;STAT1,3:-0.283404790917;POU3F1..4:-0.306635445109;ONECUT1,2:-0.322911988088;FOS_FOS{B,L1}_JUN{B,D}:-0.334205372603;SP1:-0.338207416;RUNX1..3:-0.344204820038;ATF2:-0.347752175377;NR5A1,2:-0.368667317561;FOX{D1,D2}:-0.39434017846;bHLH_family:-0.397822565329;NFIL3:-0.400010719859;HMGA1,2:-0.40117899506;ZBTB16:-0.422183421976;DBP:-0.435450106657;ALX1:-0.443338324632;PRRX1,2:-0.444938192915;T:-0.449434475016;BREu{core}:-0.458846357253;FOSL2:-0.462186777692;BACH2:-0.482637105641;NFIX:-0.492747044991;LMO2:-0.506197310374;POU1F1:-0.509725373613;NRF1:-0.515353509076;ELK1,4_GABP{A,B1}:-0.517211530649;SOX5:-0.519748248275;NFE2:-0.540524600922;ZFP161:-0.559019497289;CREB1:-0.593509326484;HOXA9_MEIS1:-0.608978653294;SPI1:-0.618055970626;DMAP1_NCOR{1,2}_SMARC:-0.63958513011;PAX3,7:-0.645979921472;MYB:-0.652526142273;NKX6-1,2:-0.66820256788;ATF4:-0.67127899821;TFDP1:-0.682872500017;SREBF1,2:-0.689178204527;IRF7:-0.704837993808;ZNF143:-0.704981274785;SNAI1..3:-0.71044747601;FOXQ1:-0.727396020294;ATF5_CREB3:-0.765556922106;PDX1:-0.791125425096;PITX1..3:-0.812043750425;PAX2:-0.855631953983;STAT5{A,B}:-0.864338893988;GFI1:-0.876962885805;FOXN1:-0.891498809943;ETS1,2:-0.892700084394;LEF1_TCF7_TCF7L1,2:-0.894478174123;SPIB:-0.898678377211;TGIF1:-0.899409096486;E2F1..5:-0.929876866062;RBPJ:-0.933327640011;PAX6:-0.935563235903;FOX{F1,F2,J1}:-0.980103149266;JUN:-0.98889605471;NKX2-3_NKX2-5:-1.00013287934;ELF1,2,4:-1.01420763396;HBP1_HMGB_SSRP1_UBTF:-1.01451956672;RFX2..5_RFXANK_RFXAP:-1.06259029197;ZEB1:-1.11748961914;FOXA2:-1.15282956276;RORA:-1.17791889727;CUX2:-1.20893572299;PBX1:-1.23163548643;ADNP_IRX_SIX_ZHX:-1.23699737781;IKZF2:-1.27953252672;GATA6:-1.31526673031;POU2F1..3:-1.32757947153;MYOD1:-1.3478018251;OCT4_SOX2{dimer}:-1.40333680134;SOX2:-1.60888234994;CRX:-1.67117250997;PAX8:-1.78220205528;NFY{A,B,C}:-1.78275164834;SOX{8,9,10}:-1.81142946051;NANOG:-2.64815230851
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11440-118H9;search_select_hide=table117:FF:11440-118H9
}}
}}

Latest revision as of 18:01, 4 June 2020

Name:Synoviocyte, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12050
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuesynovium
dev stage61 years old adult
sexmale
age61
cell typesynovial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2540
catalog numberCA408-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005569
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12050 CAGE DRX008518 DRR009390
Accession ID Hg19

Library idBAMCTSS
CNhs12050 DRZ000815 DRZ002200
Accession ID Hg38

Library idBAMCTSS
CNhs12050 DRZ012165 DRZ013550
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005569
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10004.GGCTAC sRNA-Seq DRX037041 DRR041407
Accession ID Hg19

Library idBAMCTSS
SRhi10004.GGCTAC DRZ007049


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.235
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.324
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.124
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.115
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.318
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.124
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.56
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0862
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.423
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.22
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.417
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.298
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.158
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.948
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.474
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.45
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.723
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.167
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.124
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.665
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.474
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.474
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.808
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.22
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.723
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0839
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.869
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12050

Jaspar motifP-value
MA0002.20.102
MA0003.10.22
MA0004.10.156
MA0006.10.329
MA0007.10.684
MA0009.10.803
MA0014.10.306
MA0017.10.355
MA0018.23.29475e-5
MA0019.10.999
MA0024.11.09187e-4
MA0025.10.00719
MA0027.10.916
MA0028.10.00437
MA0029.10.499
MA0030.10.0659
MA0031.10.465
MA0035.20.153
MA0038.15.06239e-4
MA0039.20.0329
MA0040.10.79
MA0041.10.935
MA0042.10.473
MA0043.14.06828e-4
MA0046.10.00348
MA0047.20.485
MA0048.10.143
MA0050.10.414
MA0051.10.344
MA0052.10.0857
MA0055.10.922
MA0057.10.29
MA0058.10.0749
MA0059.10.494
MA0060.15.20979e-19
MA0061.10.606
MA0062.21.29664e-9
MA0065.20.479
MA0066.10.986
MA0067.10.0317
MA0068.10.108
MA0069.10.197
MA0070.10.99
MA0071.10.337
MA0072.10.271
MA0073.10.885
MA0074.10.136
MA0076.12.50076e-4
MA0077.10.0463
MA0078.10.895
MA0079.20.78
MA0080.29.10965e-8
MA0081.10.00107
MA0083.10.273
MA0084.10.397
MA0087.10.239
MA0088.10.643
MA0090.10.00395
MA0091.10.143
MA0092.10.467
MA0093.10.101
MA0099.23.99725e-8
MA0100.10.075
MA0101.10.282
MA0102.20.858
MA0103.10.0412
MA0104.20.0594
MA0105.10.72
MA0106.10.16
MA0107.10.695
MA0108.20.956
MA0111.10.655
MA0112.20.00655
MA0113.10.53
MA0114.10.441
MA0115.10.768
MA0116.10.0148
MA0117.10.0988
MA0119.10.168
MA0122.10.66
MA0124.10.2
MA0125.10.0059
MA0131.10.254
MA0135.10.193
MA0136.14.55614e-11
MA0137.20.718
MA0138.20.203
MA0139.10.691
MA0140.10.104
MA0141.10.0254
MA0142.10.0116
MA0143.10.324
MA0144.10.769
MA0145.10.323
MA0146.10.143
MA0147.10.0938
MA0148.10.542
MA0149.10.545
MA0150.10.0243
MA0152.10.0474
MA0153.10.632
MA0154.10.211
MA0155.10.2
MA0156.16.62252e-13
MA0157.10.914
MA0159.10.0389
MA0160.10.976
MA0162.10.0282
MA0163.10.00412
MA0164.10.658
MA0258.10.208
MA0259.10.0706



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12050

Novel motifP-value
10.603
100.221
1000.6
1010.729
1020.0406
1030.44
1040.926
1050.0903
1060.457
1070.206
1080.111
1090.473
110.231
1100.205
1110.455
1120.293
1130.261
1140.119
1150.0344
1160.0108
1170.913
1180.48
1190.444
120.169
1200.746
1210.0505
1220.00742
1230.103
1240.395
1250.824
1260.498
1270.772
1280.174
1290.879
130.628
1300.205
1310.41
1320.0759
1330.179
1340.604
1350.676
1360.631
1370.318
1380.742
1390.125
140.633
1400.966
1410.973
1420.617
1430.76
1440.143
1450.368
1460.474
1470.183
1480.578
1490.00335
150.981
1500.477
1510.323
1520.0897
1530.651
1540.868
1550.877
1560.465
1570.91
1580.0719
1590.992
160.0302
1600.335
1610.977
1620.45
1630.859
1640.00896
1650.737
1660.103
1670.614
1680.177
1690.00518
170.248
180.252
190.00232
20.182
200.681
210.128
220.117
230.211
240.0602
250.389
260.3
270.191
280.23
290.138
30.356
300.377
310.6
322.172e-14
330.848
340.49
350.995
360.0617
370.128
380.911
390.172
40.374
400.559
410.381
420.812
430.343
440.21
450.821
460.384
470.915
480.665
490.72
50.643
500.388
510.662
520.692
530.433
540.545
550.216
560.729
570.903
580.492
590.0516
60.511
600.36
610.636
620.897
630.141
640.918
650.328
660.0113
670.801
680.15
690.869
70.291
700.116
710.341
720.814
730.0513
740.16
750.456
760.459
773.25053e-4
780.191
793.02658e-4
80.0526
800.0637
810.61
820.322
830.0241
840.372
850.0486
860.495
870.795
880.0833
890.0108
90.311
900.339
910.697
920.104
930.723
940.343
950.734
960.673
970.448
980.426
990.023



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12050


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000214 (synovial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0006914 (squamous epithelium)
0004905 (articulation)
0000486 (multilaminar epithelium)
0006915 (stratified squamous epithelium)
0007616 (layer of synovial tissue)
0000042 (serous membrane)
0000982 (skeletal joint)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002217 (synovial joint)
0002018 (synovial membrane of synovial joint)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000187 (human synovial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)

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