FF:11440-118H9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005569 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005569 | ||
|accession_numbers=CAGE;DRX008518;DRR009390;DRZ000815;DRZ002200;DRZ012165;DRZ013550 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037041;DRR041407;DRZ007049 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0006914,UBERON:0004905,UBERON:0000486,UBERON:0006915,UBERON:0007616,UBERON:0000042,UBERON:0000982,UBERON:0004458,UBERON:0010317,UBERON:0002217,UBERON:0002018,UBERON:0002204,UBERON:0001434,UBERON:0004770 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000499,CL:0000153,CL:0000327,CL:0000447,CL:0000215,CL:0000255,CL:0000214 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000187 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor3.CNhs12050.11440-118H9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor3.CNhs12050.11440-118H9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor3.CNhs12050.11440-118H9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor3.CNhs12050.11440-118H9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor3.CNhs12050.11440-118H9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11440-118H9 | |id=FF:11440-118H9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000187 | ||
|is_obsolete= | |||
|library_id=CNhs12050 | |||
|library_id_phase_based=2:CNhs12050 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11440 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GGCTAC.11440 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11440 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GGCTAC.11440 | |||
|name=Synoviocyte, donor3 | |name=Synoviocyte, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12050,LSID838,release011,COMPLETED | |profile_hcage=CNhs12050,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.061810668115653,0,0,0,0,0.0594209564559216,0,0.0210290543170366,0.478711497168663,0,0,0,0,0,0,0,0,0,0,0,0.123621336231306,0,0.407104831283808,0,0,0,0,0,0.818205775257416,0,0,0.289711118164835,0,0,0,0,0,0,0,0,0,0,0,0,0.297471670396376,0.219738986542308,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0.123621336231306,0,0,0.0387273769351438,0.123621336231306,0.376606906177581,0,0,0.267616063908399,0,0,0,0,0,0,0,0,0.123621336231306,0,0,0,0,0,0,0,0,0.0956791112647288,0.061810668115653,0,0,0,0,0,0.0802520199071246,0.061810668115653,0,0.0193433319643408,-0.0584468268118252,0.135471724285378,0.061810668115653,0.560427841632236,0,0.123621336231306,0.0255859849935995,0.363336962725055,0,0,0,0,0,0,0,0,0,0,0,0.123621336231306,0,0,0,0,0,0.264977647930292,0,0,0,-0.0361830415099865,-0.163031266177166,0.123621336231306,0,0.123621336231306,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.219738986542308,0.0255859849935995,0,0.123621336231306,0,0,0.123621336231306,0,0.123621336231306,0,0.560427841632236,0,0,-0.123557539054259,0.061810668115653,-0.109126527630513,-0.0198938062921659,0,0,-0.0806099599283238,0,0.123621336231306,0,0.0154096957812844,0.219738986542308,0,0,0.219738986542308,0,0.788043804572909,0,0.073208784641991,0,0.123621336231306,0.123621336231306,0,0.106195229929629,0.11719547704529,0,0.187093180703243,0.296615430044128,0,0,0.123621336231306,0,0.211287046492327,0,0.00274185243756531,0.0409011679078886,-0.0979902518715008,-0.0235721870403068,-0.055712496781182,0,0,0,0.31752541369759,0.585696863601271,0,0,0.13781010156011,0.254947454053535,0,0,1.27278256609608,0,0.502911099423488,0.240991180153004,0,0.061810668115653,0,0,0,0,0.969698842200527,0,0,0,0.123621336231306,0,0,1.25878694309048,0.0956791112647288,0.132923818453081,0.0334242206170421,0,0,0.0818898570986625,0,0.000153811891711597,0.100313111463619,0.095327714636635,-0.0638177896691863,-0.259342329940968,0,-0.178768390778607,0.0777765142254264,0.124624809777857,-0.104329023483775,0.217557841750357,0.408114020981961,0.0969587436465328,0.167403194273955,-0.0372998201169293,-0.0255246394312715,0.167893572919718,-0.0561023812882257,0.38321430867791,0.109705732009489,0,0,0.219738986542308,0.0542693915277919,0,-0.0410751423235862,0.38989227634382,-0.147665793393629,0.062589812429278,0.0641497567590899,0.093125654420814,-0.121020660415549,0.132147632930136,0.291536356100488,0.0277823817295141,0.230016021542667,0.130754649352142,0.123621336231306,0,-0.0547695629915674,0.0112666462226622,-0.193158465234981,0,-0.119017770689485,0.151394725464939,0,-0.176061095966455,0.00108246845534921,0,0.134738704769573,-0.213817539749916,0,0,0,0,0.364959691121496,0.0336482670974942,0.234252142222758,0.240743705864641,0,-0.114806357172719,0,-0.297286080352587,0,-0.0467659200681414,0,0,0.0666108232868021,0,-0.0908458163273432,0.696197383291513,0.143826670544879,0.0512044620284484,-0.0584468268118252,0.202700530270523,-0.0435278010444934,0.279179030674978,0.461334686508867,0.0641085351882638,-0.0881268324752877,0,0.125917066369165,0.752095531310154,0,0.150712327946138,0,0.0713256154992163,0,0.0309540959613155,0,-0.247210408673633,0.0923219705199975,-0.31566803834938,-0.110440502607292,0,0.120723632342334,-0.227703096141738,0,-0.0121018076154761,0,0,-0.0267457471033334,0.025006517192923,0.367611363217432,0.0326907047076119,0,0.426794292416866,0,0,0.306869200422039,0.324951803867847,0.123621336231306,0.0129703343441719,0.210210264551825,0.256517320788145,-0.115971073434934,0,0,-0.223032630049027,-0.011174225926972,0.123621336231306,-0.30753687730748,0,0.0450695267471989,-0.253326341486756,0.0673674366463145,0.183726529377646,0,0,0.245139941978522,0.123621336231306,0.107752785059176,0,0.123621336231306,-0.188070628483171,0,0,0.061810668115653,0,0.0160681634140846,0.279887335651014,0.0948656099720995,0.773744285252925,0,0,0,0.0148466161528364,0.13152822182832,-0.354833330216448,0,0.137833855928517,0,0,0,0,0.298391186510551,0,0,0.219738986542308,0.800915369158958,0.081548046467179,0.000603920554885673,0,0,0,0,0.449129448152358,0.0165024244475839,0.298391186510551,-0.00824137026632576,0,0.061810668115653,0,0.123621336231306,-0.0861409897892114,0,0,0.109869493271154,0.123621336231306,-0.057730457053664,0.0207472949565504,0,0,0,0.603052589218803,0.123621336231306,0,0,0.0387678708720101,0.0237832589397091,0,0.202340710653689,0.744279636603694,0,0.201292656433961,-0.0815818795468414,0,0.0547444339548545,0.22382600104628,-0.235289225824102,0,0,-0.137725795558582,0,0,0.0383867931911126,0,0.123621336231306,0,0,0,0,0,0.0322094001995546,0,0.15064517872174,0.149195593255276,0,0,0,0,0,0,0.298391186510551,0,0,0,0.384708088707903,0.381375210761675,0,0,0.0972753607387444,0,0,0,0.123621336231306,0.256107897737215,0.0967234023236445,0,0.123621336231306,0,0,0,0.123621336231306,0,0,0.444737731862231,0,0,0.364959691121496,0,0.123621336231306,0.376606906177581,0,0,0,0.123621336231306,0.83380165810602,0,0,0.0210290543170366,0,0,0,0,0,0,0,0,0,0,0,0,0,0.09641990050686,-0.266304274409958,0,0.123621336231306,0,0,0,0,0,0.244346608417876,0,0.123621336231306,0,0,0.105854612833331,0,0,0,0.193594801721394,0,0.0594209564559216,0,0,0,0,0,0.123621336231306,0,0,0,0,0,0,0,0,0,0,0,0.149195593255276,0,0,0,0.526769175959003,0.0548611539757312,0.327765432486268,0.0667623900687068,0,0,0.0664195176328625,0,0,0,0,0,0,0.078529069242627,0.0598230005793723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0213024672892434,0,0,0,0,0,0,0,0.818205775257416,0,0,-0.0302221416848731,0,0,0,0,0,0,0.134690867286988,0.394699686171829,-0.0176142140185101,0,0,0.123621336231306,0.156948281489394,0,0,0.0366480193287555,0.123621336231306,0.355890320524796,0.123621336231306,0,0,0.0431991589387507,0,0,0,0,0.123621336231306,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.407104831283808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.061810668115653,0,0,0,0,0,0,0.219738986542308,0,0.2983911865105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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA408-R10a | |rna_catalog_number=CA408-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118H9 | |rna_tube_id=118H9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.GGCTAC | |||
|sample_age=61 | |sample_age=61 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.90805336776443e-225!GO:0005737;cytoplasm;6.97663314470178e-176!GO:0043226;organelle;1.01923430057422e-144!GO:0043229;intracellular organelle;3.3208882611011e-144!GO:0043231;intracellular membrane-bound organelle;1.86116158746851e-142!GO:0043227;membrane-bound organelle;2.82573554080848e-142!GO:0044444;cytoplasmic part;5.04745269847799e-138!GO:0044422;organelle part;5.7377517253608e-103!GO:0044446;intracellular organelle part;1.29075285689306e-101!GO:0032991;macromolecular complex;1.84569154416633e-69!GO:0030529;ribonucleoprotein complex;2.28242055626488e-69!GO:0005515;protein binding;2.62847098471717e-68!GO:0044237;cellular metabolic process;2.98772330659406e-66!GO:0044238;primary metabolic process;8.51597437322294e-66!GO:0043170;macromolecule metabolic process;3.39460628341999e-60!GO:0005739;mitochondrion;5.57618074960554e-60!GO:0043233;organelle lumen;3.81171116752088e-53!GO:0031974;membrane-enclosed lumen;3.81171116752088e-53!GO:0003723;RNA binding;7.19757046775496e-51!GO:0031090;organelle membrane;1.99175883784913e-48!GO:0019538;protein metabolic process;1.26047236456839e-47!GO:0005840;ribosome;4.01614497372516e-46!GO:0044428;nuclear part;2.10506217282957e-44!GO:0006412;translation;2.09600758916914e-42!GO:0044260;cellular macromolecule metabolic process;3.26923520231079e-42!GO:0003735;structural constituent of ribosome;2.15395341586898e-41!GO:0044267;cellular protein metabolic process;1.00370515873856e-40!GO:0044429;mitochondrial part;1.33096921525169e-39!GO:0005829;cytosol;1.51582887972817e-39!GO:0015031;protein transport;1.51582887972817e-39!GO:0005634;nucleus;1.80844168815035e-39!GO:0033036;macromolecule localization;3.60118664077299e-38!GO:0033279;ribosomal subunit;1.27587628591222e-37!GO:0045184;establishment of protein localization;2.21935345613412e-37!GO:0008104;protein localization;3.17166726987326e-36!GO:0016043;cellular component organization and biogenesis;3.63591495211823e-36!GO:0009058;biosynthetic process;3.59815706291044e-35!GO:0009059;macromolecule biosynthetic process;8.02826590874654e-35!GO:0043234;protein complex;4.36223336600285e-33!GO:0044249;cellular biosynthetic process;6.63200875578728e-33!GO:0031967;organelle envelope;2.32267830936553e-31!GO:0006396;RNA processing;3.61431202530807e-31!GO:0031975;envelope;5.07435839080181e-31!GO:0031981;nuclear lumen;4.55319037834712e-28!GO:0046907;intracellular transport;6.89745793485921e-28!GO:0016071;mRNA metabolic process;1.07165000406911e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.07165000406911e-27!GO:0005740;mitochondrial envelope;2.63506330410165e-26!GO:0008380;RNA splicing;1.58977093559047e-25!GO:0010467;gene expression;1.71634113254065e-25!GO:0006886;intracellular protein transport;1.91485246214351e-25!GO:0031966;mitochondrial membrane;4.67539418958412e-25!GO:0043283;biopolymer metabolic process;1.31698841921225e-24!GO:0019866;organelle inner membrane;2.18573335355875e-24!GO:0005783;endoplasmic reticulum;8.44211108472822e-24!GO:0065003;macromolecular complex assembly;1.9131798938036e-23!GO:0006397;mRNA processing;3.46301321878318e-23!GO:0005743;mitochondrial inner membrane;3.8079304143017e-23!GO:0022607;cellular component assembly;8.3149852842307e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.45987080645436e-21!GO:0006119;oxidative phosphorylation;2.10125463540886e-21!GO:0044445;cytosolic part;1.02058889019029e-20!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.36595177557127e-19!GO:0015934;large ribosomal subunit;1.96801941775739e-19!GO:0015935;small ribosomal subunit;3.11200447299064e-19!GO:0044455;mitochondrial membrane part;5.49248074983037e-19!GO:0006457;protein folding;1.24959823028855e-18!GO:0012505;endomembrane system;1.31113377130103e-18!GO:0043228;non-membrane-bound organelle;8.22295316644512e-18!GO:0043232;intracellular non-membrane-bound organelle;8.22295316644512e-18!GO:0005681;spliceosome;1.27324128121152e-17!GO:0044432;endoplasmic reticulum part;2.06669912086436e-17!GO:0005794;Golgi apparatus;2.12426652857738e-17!GO:0005654;nucleoplasm;5.22321833346869e-17!GO:0005746;mitochondrial respiratory chain;5.47740831336463e-17!GO:0051649;establishment of cellular localization;8.38341719159607e-17!GO:0051641;cellular localization;8.46812978654593e-17!GO:0006996;organelle organization and biogenesis;9.44419262222435e-17!GO:0048770;pigment granule;2.36741491764743e-16!GO:0042470;melanosome;2.36741491764743e-16!GO:0031980;mitochondrial lumen;4.79532648727402e-16!GO:0005759;mitochondrial matrix;4.79532648727402e-16!GO:0022618;protein-RNA complex assembly;7.39003343961213e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.11028971368395e-15!GO:0000502;proteasome complex (sensu Eukaryota);4.27244891345611e-15!GO:0008134;transcription factor binding;4.53961377335821e-15!GO:0051186;cofactor metabolic process;6.70767246002125e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.0660483660423e-14!GO:0003954;NADH dehydrogenase activity;1.0660483660423e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.0660483660423e-14!GO:0006512;ubiquitin cycle;1.0755112151778e-14!GO:0044265;cellular macromolecule catabolic process;1.93267100687211e-14!GO:0016874;ligase activity;2.94216701153209e-14!GO:0043285;biopolymer catabolic process;3.1297887907803e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.1297887907803e-14!GO:0044451;nucleoplasm part;3.41337940424037e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.13312166760788e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.49749432462034e-14!GO:0016462;pyrophosphatase activity;4.58557780471566e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.83350930081307e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;6.83350930081307e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;8.76916005328798e-14!GO:0008135;translation factor activity, nucleic acid binding;9.59210564731653e-14!GO:0048193;Golgi vesicle transport;1.14621851106185e-13!GO:0017111;nucleoside-triphosphatase activity;1.25010602815392e-13!GO:0019941;modification-dependent protein catabolic process;1.92179185435564e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.92179185435564e-13!GO:0044257;cellular protein catabolic process;2.09313442519085e-13!GO:0006605;protein targeting;2.09313442519085e-13!GO:0005761;mitochondrial ribosome;2.9702202206895e-13!GO:0000313;organellar ribosome;2.9702202206895e-13!GO:0006511;ubiquitin-dependent protein catabolic process;3.11792412244255e-13!GO:0044248;cellular catabolic process;3.72861390031815e-13!GO:0051082;unfolded protein binding;5.13081672492178e-13!GO:0030964;NADH dehydrogenase complex (quinone);7.36486930141804e-13!GO:0045271;respiratory chain complex I;7.36486930141804e-13!GO:0005747;mitochondrial respiratory chain complex I;7.36486930141804e-13!GO:0042775;organelle ATP synthesis coupled electron transport;7.57494950449265e-13!GO:0042773;ATP synthesis coupled electron transport;7.57494950449265e-13!GO:0009057;macromolecule catabolic process;7.80974068814702e-13!GO:0005793;ER-Golgi intermediate compartment;1.05504243940895e-12!GO:0016192;vesicle-mediated transport;1.8548605434722e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.19150975855135e-12!GO:0005730;nucleolus;2.92652769231237e-12!GO:0030163;protein catabolic process;3.63354435937658e-12!GO:0000166;nucleotide binding;3.88583380436277e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.41681394495624e-12!GO:0006732;coenzyme metabolic process;1.0535520906704e-11!GO:0012501;programmed cell death;1.30567721374665e-11!GO:0005789;endoplasmic reticulum membrane;1.45350906839514e-11!GO:0009055;electron carrier activity;1.49833355826572e-11!GO:0006915;apoptosis;2.43439062485254e-11!GO:0006413;translational initiation;9.19336875505466e-11!GO:0003676;nucleic acid binding;9.4457096433746e-11!GO:0006259;DNA metabolic process;1.16371066952344e-10!GO:0016491;oxidoreductase activity;1.18344796358445e-10!GO:0003743;translation initiation factor activity;1.29026400805975e-10!GO:0008219;cell death;2.35955342107801e-10!GO:0016265;death;2.35955342107801e-10!GO:0048523;negative regulation of cellular process;4.65895108767985e-10!GO:0006446;regulation of translational initiation;5.67548015661439e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.39685386279085e-09!GO:0000375;RNA splicing, via transesterification reactions;1.39685386279085e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.39685386279085e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.54013627272899e-09!GO:0043412;biopolymer modification;3.28664557920014e-09!GO:0003712;transcription cofactor activity;7.99106969623385e-09!GO:0008639;small protein conjugating enzyme activity;8.77667416663554e-09!GO:0016070;RNA metabolic process;9.19575144256879e-09!GO:0005773;vacuole;1.0156505200888e-08!GO:0005788;endoplasmic reticulum lumen;1.09324039525917e-08!GO:0009150;purine ribonucleotide metabolic process;1.09324039525917e-08!GO:0009259;ribonucleotide metabolic process;1.15098853070849e-08!GO:0005768;endosome;1.34653379454262e-08!GO:0048519;negative regulation of biological process;1.52325708493554e-08!GO:0004842;ubiquitin-protein ligase activity;1.64607959680349e-08!GO:0009060;aerobic respiration;1.68021800760287e-08!GO:0006163;purine nucleotide metabolic process;1.80977013394003e-08!GO:0006464;protein modification process;1.95050973696032e-08!GO:0009056;catabolic process;1.96221709840592e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.01898334719001e-08!GO:0019787;small conjugating protein ligase activity;2.11858502608715e-08!GO:0045333;cellular respiration;2.24916626129198e-08!GO:0006461;protein complex assembly;2.26718645830322e-08!GO:0017076;purine nucleotide binding;3.12845345782356e-08!GO:0007049;cell cycle;5.8443262886299e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.8443262886299e-08!GO:0015986;ATP synthesis coupled proton transport;6.38406212692625e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.38406212692625e-08!GO:0006913;nucleocytoplasmic transport;6.72640453194099e-08!GO:0030120;vesicle coat;7.06049942823656e-08!GO:0030662;coated vesicle membrane;7.06049942823656e-08!GO:0017038;protein import;7.37451272517898e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.56512380231878e-08!GO:0009144;purine nucleoside triphosphate metabolic process;7.56512380231878e-08!GO:0016604;nuclear body;8.18115393126789e-08!GO:0009199;ribonucleoside triphosphate metabolic process;8.94482786264549e-08!GO:0006164;purine nucleotide biosynthetic process;9.81910549553861e-08!GO:0032553;ribonucleotide binding;9.81910549553861e-08!GO:0032555;purine ribonucleotide binding;9.81910549553861e-08!GO:0051169;nuclear transport;1.17118040116077e-07!GO:0044431;Golgi apparatus part;1.26745052126176e-07!GO:0009260;ribonucleotide biosynthetic process;1.27686811406476e-07!GO:0000323;lytic vacuole;1.27719947501626e-07!GO:0005764;lysosome;1.27719947501626e-07!GO:0009141;nucleoside triphosphate metabolic process;1.34227268134734e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.4395351327076e-07!GO:0042981;regulation of apoptosis;1.4395351327076e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.4395351327076e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.46487723340058e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.54716293378141e-07!GO:0043067;regulation of programmed cell death;1.62524674584571e-07!GO:0019829;cation-transporting ATPase activity;1.74350916920675e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.75928729046703e-07!GO:0008565;protein transporter activity;1.80667105250654e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.95675766706602e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.04968195129606e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.04968195129606e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.51505737657478e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.51505737657478e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.60202436096725e-07!GO:0006091;generation of precursor metabolites and energy;3.20677840176474e-07!GO:0016881;acid-amino acid ligase activity;3.33806598676328e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.03928263436339e-07!GO:0046034;ATP metabolic process;4.24872101639804e-07!GO:0003924;GTPase activity;4.29314900045217e-07!GO:0006099;tricarboxylic acid cycle;5.39317429943184e-07!GO:0046356;acetyl-CoA catabolic process;5.39317429943184e-07!GO:0004298;threonine endopeptidase activity;5.39317429943184e-07!GO:0051188;cofactor biosynthetic process;6.03578959491577e-07!GO:0051187;cofactor catabolic process;6.23628414141044e-07!GO:0048475;coated membrane;6.24535911056543e-07!GO:0030117;membrane coat;6.24535911056543e-07!GO:0042254;ribosome biogenesis and assembly;6.39748945507735e-07!GO:0043687;post-translational protein modification;6.40995901161567e-07!GO:0006974;response to DNA damage stimulus;6.79062477491344e-07!GO:0008361;regulation of cell size;7.94329492244242e-07!GO:0051246;regulation of protein metabolic process;9.27784884236547e-07!GO:0016049;cell growth;9.49479610947809e-07!GO:0006366;transcription from RNA polymerase II promoter;9.49479610947809e-07!GO:0006754;ATP biosynthetic process;9.86860213671495e-07!GO:0006753;nucleoside phosphate metabolic process;9.86860213671495e-07!GO:0016887;ATPase activity;1.05350710607936e-06!GO:0044440;endosomal part;1.11013397514909e-06!GO:0010008;endosome membrane;1.11013397514909e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.20663752760086e-06!GO:0009109;coenzyme catabolic process;1.21031789159862e-06!GO:0005635;nuclear envelope;1.40676619150068e-06!GO:0042623;ATPase activity, coupled;1.69052428772358e-06!GO:0031965;nuclear membrane;1.95829049461035e-06!GO:0051789;response to protein stimulus;2.09498282235682e-06!GO:0006986;response to unfolded protein;2.09498282235682e-06!GO:0006084;acetyl-CoA metabolic process;2.11077935086572e-06!GO:0043069;negative regulation of programmed cell death;2.30286630418335e-06!GO:0043066;negative regulation of apoptosis;2.60561810065296e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.93094410923777e-06!GO:0001558;regulation of cell growth;3.04928316716693e-06!GO:0006399;tRNA metabolic process;3.17478444257504e-06!GO:0009117;nucleotide metabolic process;3.24536383357957e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.71821050244309e-06!GO:0004812;aminoacyl-tRNA ligase activity;4.71821050244309e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.71821050244309e-06!GO:0016607;nuclear speck;5.41842389623761e-06!GO:0045786;negative regulation of progression through cell cycle;6.2610827055128e-06!GO:0045259;proton-transporting ATP synthase complex;6.50412135400907e-06!GO:0050794;regulation of cellular process;6.54790781607172e-06!GO:0006916;anti-apoptosis;8.05334184362541e-06!GO:0043038;amino acid activation;8.45117749886074e-06!GO:0006418;tRNA aminoacylation for protein translation;8.45117749886074e-06!GO:0043039;tRNA aminoacylation;8.45117749886074e-06!GO:0022402;cell cycle process;8.78660063915025e-06!GO:0005770;late endosome;9.2776316567708e-06!GO:0000139;Golgi membrane;1.02862648776226e-05!GO:0044453;nuclear membrane part;1.22000486816547e-05!GO:0016787;hydrolase activity;1.29156707085294e-05!GO:0008654;phospholipid biosynthetic process;1.32943657222147e-05!GO:0016564;transcription repressor activity;1.33386585007849e-05!GO:0031988;membrane-bound vesicle;1.50192475804774e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.54819946813398e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.54819946813398e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.59311319228688e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.64773461373767e-05!GO:0005798;Golgi-associated vesicle;1.72563138848471e-05!GO:0009108;coenzyme biosynthetic process;1.84035700609069e-05!GO:0003714;transcription corepressor activity;1.85830044587774e-05!GO:0030554;adenyl nucleotide binding;1.8704730871782e-05!GO:0005762;mitochondrial large ribosomal subunit;1.90612149049581e-05!GO:0000315;organellar large ribosomal subunit;1.90612149049581e-05!GO:0031324;negative regulation of cellular metabolic process;1.90670161853711e-05!GO:0051726;regulation of cell cycle;2.04701894126612e-05!GO:0005525;GTP binding;2.04810734444612e-05!GO:0019843;rRNA binding;2.2917117020159e-05!GO:0000151;ubiquitin ligase complex;2.32743176779159e-05!GO:0051170;nuclear import;2.39874245468253e-05!GO:0006281;DNA repair;2.52230271138412e-05!GO:0000074;regulation of progression through cell cycle;2.52694960602008e-05!GO:0009719;response to endogenous stimulus;2.55206062343023e-05!GO:0007005;mitochondrion organization and biogenesis;2.70524133707094e-05!GO:0008026;ATP-dependent helicase activity;2.90985648502594e-05!GO:0006752;group transfer coenzyme metabolic process;2.93555628416009e-05!GO:0006606;protein import into nucleus;3.05010574726175e-05!GO:0000245;spliceosome assembly;3.53164494151764e-05!GO:0005524;ATP binding;3.73057677818327e-05!GO:0031982;vesicle;3.73317611707072e-05!GO:0032559;adenyl ribonucleotide binding;4.33159335641492e-05!GO:0006613;cotranslational protein targeting to membrane;5.06494309342189e-05!GO:0032446;protein modification by small protein conjugation;5.42773965639852e-05!GO:0031410;cytoplasmic vesicle;5.61623621186191e-05!GO:0005791;rough endoplasmic reticulum;5.7231963713717e-05!GO:0005769;early endosome;6.07962858396267e-05!GO:0031252;leading edge;6.18226131526333e-05!GO:0016567;protein ubiquitination;6.33830490916977e-05!GO:0044262;cellular carbohydrate metabolic process;6.48608846367647e-05!GO:0016853;isomerase activity;7.10156411224906e-05!GO:0065002;intracellular protein transport across a membrane;7.22029638313465e-05!GO:0048522;positive regulation of cellular process;7.44264605123099e-05!GO:0004386;helicase activity;7.60903622852131e-05!GO:0003697;single-stranded DNA binding;7.77828683063043e-05!GO:0030133;transport vesicle;8.93562686879776e-05!GO:0043566;structure-specific DNA binding;0.000105708182751427!GO:0030029;actin filament-based process;0.000120393195147811!GO:0005905;coated pit;0.000122952120378999!GO:0009892;negative regulation of metabolic process;0.000136490643215877!GO:0045454;cell redox homeostasis;0.000146498307372597!GO:0046474;glycerophospholipid biosynthetic process;0.000156634389777069!GO:0033116;ER-Golgi intermediate compartment membrane;0.000165422971509246!GO:0040008;regulation of growth;0.000167320729329727!GO:0007243;protein kinase cascade;0.000175517940641302!GO:0032561;guanyl ribonucleotide binding;0.000210339321486165!GO:0019001;guanyl nucleotide binding;0.000210339321486165!GO:0005643;nuclear pore;0.000214633117194102!GO:0030867;rough endoplasmic reticulum membrane;0.000228606512478466!GO:0005667;transcription factor complex;0.000240862959233803!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000263413746825337!GO:0016859;cis-trans isomerase activity;0.00027220883317939!GO:0005048;signal sequence binding;0.000282609724327625!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000284444469794382!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000284444469794382!GO:0006364;rRNA processing;0.000302818547011535!GO:0050789;regulation of biological process;0.000306663521343949!GO:0006612;protein targeting to membrane;0.000334269408800348!GO:0000314;organellar small ribosomal subunit;0.000336970052058939!GO:0005763;mitochondrial small ribosomal subunit;0.000336970052058939!GO:0016072;rRNA metabolic process;0.000360532564327977!GO:0016481;negative regulation of transcription;0.000360532564327977!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0003726352806123!GO:0043021;ribonucleoprotein binding;0.000487078559716047!GO:0006323;DNA packaging;0.000689776580541376!GO:0003713;transcription coactivator activity;0.000717071573356635!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000725247500530862!GO:0046930;pore complex;0.000820152037629427!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000820152037629427!GO:0030663;COPI coated vesicle membrane;0.000834127601707067!GO:0030126;COPI vesicle coat;0.000834127601707067!GO:0043623;cellular protein complex assembly;0.00085041105700801!GO:0007264;small GTPase mediated signal transduction;0.000971746952815817!GO:0031968;organelle outer membrane;0.00105111021486046!GO:0000278;mitotic cell cycle;0.00105569753683368!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0010621672834391!GO:0019867;outer membrane;0.001064110196855!GO:0006793;phosphorus metabolic process;0.00114329186186666!GO:0006796;phosphate metabolic process;0.00114329186186666!GO:0051920;peroxiredoxin activity;0.00115715632024486!GO:0016779;nucleotidyltransferase activity;0.00117710645284857!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00119705243118199!GO:0003724;RNA helicase activity;0.0012273661880502!GO:0005741;mitochondrial outer membrane;0.00130287103032823!GO:0016044;membrane organization and biogenesis;0.00130287103032823!GO:0004576;oligosaccharyl transferase activity;0.00130287103032823!GO:0046489;phosphoinositide biosynthetic process;0.0013974607729849!GO:0005885;Arp2/3 protein complex;0.00142426092333216!GO:0009967;positive regulation of signal transduction;0.00142585308259652!GO:0050657;nucleic acid transport;0.00148499878749989!GO:0051236;establishment of RNA localization;0.00148499878749989!GO:0050658;RNA transport;0.00148499878749989!GO:0030137;COPI-coated vesicle;0.00152826616078763!GO:0016563;transcription activator activity;0.0015321434500044!GO:0008250;oligosaccharyl transferase complex;0.00156492944545998!GO:0030132;clathrin coat of coated pit;0.00159324521298215!GO:0048518;positive regulation of biological process;0.00168950919270226!GO:0006403;RNA localization;0.0018243978597591!GO:0016310;phosphorylation;0.00192310104710345!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00195601739475242!GO:0051287;NAD binding;0.00195601739475242!GO:0006979;response to oxidative stress;0.00196454272769998!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00197932668830409!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00197932668830409!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00197932668830409!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00197932668830409!GO:0043681;protein import into mitochondrion;0.00202479541886635!GO:0008154;actin polymerization and/or depolymerization;0.00209173358582767!GO:0051252;regulation of RNA metabolic process;0.00211978114420459!GO:0016740;transferase activity;0.00213373395225418!GO:0005813;centrosome;0.00213587914293914!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00214156701113261!GO:0004177;aminopeptidase activity;0.00214667213698557!GO:0046467;membrane lipid biosynthetic process;0.00219102268440977!GO:0006118;electron transport;0.00238101221244815!GO:0051427;hormone receptor binding;0.0023847611280263!GO:0051276;chromosome organization and biogenesis;0.00239011187574486!GO:0043488;regulation of mRNA stability;0.00270398970264249!GO:0043487;regulation of RNA stability;0.00270398970264249!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00275808234832988!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00288690571453897!GO:0015002;heme-copper terminal oxidase activity;0.00288690571453897!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00288690571453897!GO:0004129;cytochrome-c oxidase activity;0.00288690571453897!GO:0065004;protein-DNA complex assembly;0.00300689920961872!GO:0050662;coenzyme binding;0.00301449223841792!GO:0030041;actin filament polymerization;0.00317209461833059!GO:0009165;nucleotide biosynthetic process;0.00320025463872728!GO:0006509;membrane protein ectodomain proteolysis;0.00326731322228653!GO:0033619;membrane protein proteolysis;0.00326731322228653!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0034752403264629!GO:0015399;primary active transmembrane transporter activity;0.0034752403264629!GO:0006260;DNA replication;0.0034752403264629!GO:0016197;endosome transport;0.00348536811110163!GO:0006950;response to stress;0.00348536811110163!GO:0016568;chromatin modification;0.00355859935433626!GO:0006414;translational elongation;0.00383434497572377!GO:0022890;inorganic cation transmembrane transporter activity;0.00384494801845479!GO:0001872;zymosan binding;0.00384494801845479!GO:0001878;response to yeast;0.00384494801845479!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00390295397108323!GO:0006891;intra-Golgi vesicle-mediated transport;0.00393354270803334!GO:0005815;microtubule organizing center;0.00394291864723252!GO:0003729;mRNA binding;0.00395209984077148!GO:0006650;glycerophospholipid metabolic process;0.00395916797242957!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00412707765043833!GO:0035257;nuclear hormone receptor binding;0.00421109753809223!GO:0043065;positive regulation of apoptosis;0.00427301981813669!GO:0008092;cytoskeletal protein binding;0.00433270901804252!GO:0048500;signal recognition particle;0.00442416665213723!GO:0031901;early endosome membrane;0.00444498584543159!GO:0003899;DNA-directed RNA polymerase activity;0.00448398581061951!GO:0019752;carboxylic acid metabolic process;0.00451050334571442!GO:0030658;transport vesicle membrane;0.00457205844329977!GO:0043068;positive regulation of programmed cell death;0.00469184066052458!GO:0043284;biopolymer biosynthetic process;0.00472759981494661!GO:0003746;translation elongation factor activity;0.00475245088741813!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0047978880657232!GO:0018196;peptidyl-asparagine modification;0.0047978880657232!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0047978880657232!GO:0030118;clathrin coat;0.00494041283700089!GO:0006082;organic acid metabolic process;0.0049482114594632!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00503239912878225!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00508038917849289!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00529706780580183!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00534680737837146!GO:0006333;chromatin assembly or disassembly;0.00550344903637109!GO:0030145;manganese ion binding;0.00550386714584161!GO:0005520;insulin-like growth factor binding;0.00563972880484524!GO:0007050;cell cycle arrest;0.00572543566878779!GO:0048487;beta-tubulin binding;0.00593156834708302!GO:0006818;hydrogen transport;0.00639600713489292!GO:0046483;heterocycle metabolic process;0.00654533365713254!GO:0001726;ruffle;0.00690588261075927!GO:0015992;proton transport;0.00696999610522327!GO:0015630;microtubule cytoskeleton;0.00713304899138205!GO:0019899;enzyme binding;0.0072276839546246!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00742468855876543!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00742468855876543!GO:0048468;cell development;0.00750923250137183!GO:0031072;heat shock protein binding;0.00774769689007867!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00791528920541543!GO:0005869;dynactin complex;0.00796186115449726!GO:0008610;lipid biosynthetic process;0.00796186115449726!GO:0051128;regulation of cellular component organization and biogenesis;0.00805866039239528!GO:0007040;lysosome organization and biogenesis;0.00842895933393087!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00860344228637666!GO:0045047;protein targeting to ER;0.00860344228637666!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00887653834988495!GO:0030659;cytoplasmic vesicle membrane;0.00887653834988495!GO:0006626;protein targeting to mitochondrion;0.00890594084149238!GO:0006354;RNA elongation;0.00899950201186759!GO:0017166;vinculin binding;0.00907602796312886!GO:0006402;mRNA catabolic process;0.00924193383310801!GO:0030660;Golgi-associated vesicle membrane;0.00978838754574762!GO:0007033;vacuole organization and biogenesis;0.00997863819911049!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00998145985284543!GO:0006506;GPI anchor biosynthetic process;0.00998145985284543!GO:0006740;NADPH regeneration;0.0103663270788148!GO:0006098;pentose-phosphate shunt;0.0103663270788148!GO:0051028;mRNA transport;0.0104171346258067!GO:0030176;integral to endoplasmic reticulum membrane;0.0104171346258067!GO:0006383;transcription from RNA polymerase III promoter;0.0104234439531709!GO:0006892;post-Golgi vesicle-mediated transport;0.0105857237641109!GO:0005774;vacuolar membrane;0.0106751887350063!GO:0007010;cytoskeleton organization and biogenesis;0.0107503123284534!GO:0008139;nuclear localization sequence binding;0.0108173009032!GO:0003690;double-stranded DNA binding;0.0109398523399291!GO:0051540;metal cluster binding;0.0110045249716242!GO:0051536;iron-sulfur cluster binding;0.0110045249716242!GO:0030880;RNA polymerase complex;0.0112095556767852!GO:0030125;clathrin vesicle coat;0.0113042233360439!GO:0030665;clathrin coated vesicle membrane;0.0113042233360439!GO:0003711;transcription elongation regulator activity;0.0113612464735885!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0114449533794569!GO:0030027;lamellipodium;0.011609254168998!GO:0051059;NF-kappaB binding;0.0118681743921571!GO:0031902;late endosome membrane;0.0118681743921571!GO:0045892;negative regulation of transcription, DNA-dependent;0.0119223333232697!GO:0048471;perinuclear region of cytoplasm;0.011977945883938!GO:0008186;RNA-dependent ATPase activity;0.0120081273974521!GO:0051087;chaperone binding;0.0120617708395903!GO:0005694;chromosome;0.0121136917434504!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0121198547812978!GO:0008312;7S RNA binding;0.012343021289992!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0125088589541881!GO:0030134;ER to Golgi transport vesicle;0.0128354209627051!GO:0006505;GPI anchor metabolic process;0.0130439408564779!GO:0006497;protein amino acid lipidation;0.0130439408564779!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0131972383998018!GO:0033043;regulation of organelle organization and biogenesis;0.0131972383998018!GO:0030127;COPII vesicle coat;0.0142638942957544!GO:0012507;ER to Golgi transport vesicle membrane;0.0142638942957544!GO:0044433;cytoplasmic vesicle part;0.0146575417440363!GO:0030384;phosphoinositide metabolic process;0.0148589208340263!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0149785396704854!GO:0043492;ATPase activity, coupled to movement of substances;0.0150463084990531!GO:0006595;polyamine metabolic process;0.0152749016228697!GO:0000785;chromatin;0.0152749016228697!GO:0007006;mitochondrial membrane organization and biogenesis;0.0153523843987173!GO:0051329;interphase of mitotic cell cycle;0.0153550094257995!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0155580842578863!GO:0043433;negative regulation of transcription factor activity;0.0156240710365307!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0158336928663641!GO:0030119;AP-type membrane coat adaptor complex;0.0158336928663641!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0159646191127395!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0159646191127395!GO:0006839;mitochondrial transport;0.0163011550255741!GO:0030833;regulation of actin filament polymerization;0.0163011550255741!GO:0008632;apoptotic program;0.0164475473120539!GO:0006917;induction of apoptosis;0.0168128934079869!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0172419981027514!GO:0006693;prostaglandin metabolic process;0.0179129065824557!GO:0006692;prostanoid metabolic process;0.0179129065824557!GO:0008180;signalosome;0.0180566883713571!GO:0042802;identical protein binding;0.018190228952903!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0186901204260696!GO:0051325;interphase;0.0192415932075258!GO:0016860;intramolecular oxidoreductase activity;0.0192952835828656!GO:0030032;lamellipodium biogenesis;0.0194569363954761!GO:0008383;manganese superoxide dismutase activity;0.0195095603926083!GO:0001315;age-dependent response to reactive oxygen species;0.0195095603926083!GO:0048037;cofactor binding;0.0195749997192152!GO:0045792;negative regulation of cell size;0.0195906558419841!GO:0042158;lipoprotein biosynthetic process;0.0196438866062625!GO:0012502;induction of programmed cell death;0.0196438866062625!GO:0035035;histone acetyltransferase binding;0.0199900956777784!GO:0006643;membrane lipid metabolic process;0.020664114173996!GO:0050811;GABA receptor binding;0.0207470126988441!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0212480088894411!GO:0000428;DNA-directed RNA polymerase complex;0.0212480088894411!GO:0030308;negative regulation of cell growth;0.0213004178604705!GO:0000049;tRNA binding;0.0213004178604705!GO:0001527;microfibril;0.0215330952449618!GO:0031529;ruffle organization and biogenesis;0.0215347921171136!GO:0006289;nucleotide-excision repair;0.0216628527332647!GO:0006401;RNA catabolic process;0.0217630237398755!GO:0051101;regulation of DNA binding;0.022608226604663!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0236388340782006!GO:0044437;vacuolar part;0.0241556979198687!GO:0012506;vesicle membrane;0.0242878713895386!GO:0065007;biological regulation;0.0243036829659703!GO:0006790;sulfur metabolic process;0.0243036829659703!GO:0006778;porphyrin metabolic process;0.0243036829659703!GO:0033013;tetrapyrrole metabolic process;0.0243036829659703!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0243119404818121!GO:0051168;nuclear export;0.0243956508260555!GO:0043022;ribosome binding;0.0246844408511118!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0252176019023268!GO:0005765;lysosomal membrane;0.0256802604897166!GO:0031543;peptidyl-proline dioxygenase activity;0.0259002630141418!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0259484057195663!GO:0003756;protein disulfide isomerase activity;0.0259484057195663!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0259484057195663!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0261817471516738!GO:0004228;gelatinase A activity;0.0262015333615014!GO:0001955;blood vessel maturation;0.0262015333615014!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0265097838442873!GO:0004784;superoxide dismutase activity;0.0265097838442873!GO:0004004;ATP-dependent RNA helicase activity;0.0267310211976254!GO:0005684;U2-dependent spliceosome;0.0268340540551847!GO:0030521;androgen receptor signaling pathway;0.0274664354218412!GO:0007021;tubulin folding;0.028637865259508!GO:0007034;vacuolar transport;0.0289970080168557!GO:0030131;clathrin adaptor complex;0.0289970080168557!GO:0006897;endocytosis;0.0291973751979926!GO:0010324;membrane invagination;0.0291973751979926!GO:0007160;cell-matrix adhesion;0.0296534617628149!GO:0015631;tubulin binding;0.0301630663493671!GO:0045045;secretory pathway;0.0302853882216985!GO:0016408;C-acyltransferase activity;0.0315156240116659!GO:0046519;sphingoid metabolic process;0.0315197413471085!GO:0051539;4 iron, 4 sulfur cluster binding;0.0315216012806115!GO:0031625;ubiquitin protein ligase binding;0.0315216012806115!GO:0044427;chromosomal part;0.0322594645100033!GO:0031589;cell-substrate adhesion;0.0330916362028221!GO:0000339;RNA cap binding;0.0332840151796416!GO:0031272;regulation of pseudopodium formation;0.0336984966884492!GO:0031269;pseudopodium formation;0.0336984966884492!GO:0031344;regulation of cell projection organization and biogenesis;0.0336984966884492!GO:0031268;pseudopodium organization and biogenesis;0.0336984966884492!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0336984966884492!GO:0031274;positive regulation of pseudopodium formation;0.0336984966884492!GO:0051235;maintenance of localization;0.0336984966884492!GO:0008234;cysteine-type peptidase activity;0.035440635374139!GO:0006644;phospholipid metabolic process;0.0370858556602061!GO:0005862;muscle thin filament tropomyosin;0.0372772179535838!GO:0007265;Ras protein signal transduction;0.038089903943923!GO:0005777;peroxisome;0.0383398911074894!GO:0042579;microbody;0.0383398911074894!GO:0016272;prefoldin complex;0.0393098313164221!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0398192816142622!GO:0005832;chaperonin-containing T-complex;0.0402317367854763!GO:0006672;ceramide metabolic process;0.0402755040701881!GO:0003684;damaged DNA binding;0.0407857591471101!GO:0016126;sterol biosynthetic process;0.041220553534869!GO:0005795;Golgi stack;0.0412330247719278!GO:0004197;cysteine-type endopeptidase activity;0.0417501259866477!GO:0005637;nuclear inner membrane;0.0419206982659993!GO:0016363;nuclear matrix;0.0422372973835822!GO:0000209;protein polyubiquitination;0.0422785096647801!GO:0030518;steroid hormone receptor signaling pathway;0.0431528897347084!GO:0042168;heme metabolic process;0.0431528897347084!GO:0031418;L-ascorbic acid binding;0.0433534317871688!GO:0030128;clathrin coat of endocytic vesicle;0.0437076980438662!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0437076980438662!GO:0030122;AP-2 adaptor complex;0.0437076980438662!GO:0019222;regulation of metabolic process;0.0437076980438662!GO:0045185;maintenance of protein localization;0.0443515275783845!GO:0000059;protein import into nucleus, docking;0.0443978184779378!GO:0000096;sulfur amino acid metabolic process;0.0446142090898613!GO:0030911;TPR domain binding;0.0449712746082948!GO:0006635;fatty acid beta-oxidation;0.0457887266768043!GO:0045334;clathrin-coated endocytic vesicle;0.0458249286576676!GO:0032984;macromolecular complex disassembly;0.0463234496561855!GO:0019798;procollagen-proline dioxygenase activity;0.0463234496561855!GO:0009225;nucleotide-sugar metabolic process;0.0470585378451853!GO:0022415;viral reproductive process;0.0473143948444373!GO:0005975;carbohydrate metabolic process;0.0480164669495011!GO:0008022;protein C-terminus binding;0.0480342879816684!GO:0030832;regulation of actin filament length;0.0482737871593294!GO:0015036;disulfide oxidoreductase activity;0.0484195488520002!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0493642290908699!GO:0046813;virion attachment, binding of host cell surface receptor;0.0493642290908699!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0493642290908699!GO:0022408;negative regulation of cell-cell adhesion;0.0495768794150975!GO:0007030;Golgi organization and biogenesis;0.0498523492010517!GO:0005583;fibrillar collagen;0.0498941264610372 | |||
|sample_id=11440 | |sample_id=11440 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=synovium | |sample_tissue=synovium | ||
|top_motifs=ALX4:2.13747548973;UFEwm:1.91376713201;EVI1:1.78011899723;KLF4:1.71235176243;ESR1:1.54583220234;FOXL1:1.5211594062;EN1,2:1.45136973316;SPZ1:1.340246889;MYBL2:1.24327680037;RXRA_VDR{dimer}:1.24067846405;NKX2-1,4:1.21573497113;ZNF238:1.20687822612;TAL1_TCF{3,4,12}:1.19125020724;GLI1..3:1.18814944437;RREB1:1.14779986723;RXR{A,B,G}:1.13518446953;FOXO1,3,4:1.12595273942;ATF6:1.1047404012;TEAD1:1.0910212661;PRDM1:1.05067212263;NKX3-1:1.04594723405;MTF1:1.0346445683;GZF1:1.03182697198;TFCP2:0.963025688891;IKZF1:0.950414783843;TLX1..3_NFIC{dimer}:0.927162964604;HSF1,2:0.900396336266;TFAP4:0.888892518147;HES1:0.869849861866;SMAD1..7,9:0.868158378846;GCM1,2:0.860655813445;PAX1,9:0.837016634299;ZNF423:0.823981539887;TEF:0.801114019548;GFI1B:0.799076230606;HOX{A4,D4}:0.776266300832;TOPORS:0.722000937329;ZIC1..3:0.713060977208;STAT2,4,6:0.693875233345;EBF1:0.674817676235;NFE2L1:0.6435839043;XBP1:0.636038396501;ESRRA:0.635347634343;NR6A1:0.620966275077;GTF2I:0.589333579744;NFATC1..3:0.586099599156;XCPE1{core}:0.583262401537;TFAP2B:0.577615824056;HMX1:0.574750884955;NKX2-2,8:0.560372551758;GATA4:0.560180918699;TP53:0.559471313776;IRF1,2:0.559432704802;HOX{A5,B5}:0.535137041008;CDX1,2,4:0.527633051787;NR1H4:0.519503125237;LHX3,4:0.493111609223;HAND1,2:0.483908056471;VSX1,2:0.482144836218;PAX5:0.459077453505;ZNF148:0.457350016944;SRF:0.399283781889;BPTF:0.375304583035;GTF2A1,2:0.360414070742;HOX{A6,A7,B6,B7}:0.34892213818;HLF:0.343369970173;TBP:0.342022442348;HIC1:0.335384205501;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.332233360196;MAFB:0.331712699041;TFAP2{A,C}:0.326537493609;FOXD3:0.308342486114;NR3C1:0.306808460552;AIRE:0.289431193777;MAZ:0.286056519851;NKX3-2:0.268399841549;ZNF384:0.234169707523;FOXM1:0.206757503518;AR:0.183658464655;TLX2:0.178135347984;YY1:0.172060713029;MYFfamily:0.150970030783;FOXP3:0.102455306971;PATZ1:0.0909669357526;ZBTB6:0.0900691478164;HIF1A:0.0789757641613;PPARG:0.0407290035467;CDC5L:0.0337622744275;RFX1:0.0260713809139;MED-1{core}:0.00874138812065;POU5F1:0.000351916471897;FOXP1:-0.00596461475085;MTE{core}:-0.0518622323812;TBX4,5:-0.0610355220875;NFKB1_REL_RELA:-0.0617013585129;PAX4:-0.0653631908811;EP300:-0.0680929289704;MZF1:-0.0778098600711;POU6F1:-0.0812697464943;MEF2{A,B,C,D}:-0.0853787737746;SOX17:-0.108742338472;REST:-0.110447979674;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.119964013603;NANOG{mouse}:-0.143707704729;ARID5B:-0.153389125932;CEBPA,B_DDIT3:-0.159189794884;NHLH1,2:-0.178796870816;FOX{I1,J2}:-0.194683208243;EGR1..3:-0.200028743196;HNF1A:-0.202687518684;AHR_ARNT_ARNT2:-0.210026543149;HNF4A_NR2F1,2:-0.25801304901;NFE2L2:-0.275026961704;STAT1,3:-0.283404790917;POU3F1..4:-0.306635445109;ONECUT1,2:-0.322911988088;FOS_FOS{B,L1}_JUN{B,D}:-0.334205372603;SP1:-0.338207416;RUNX1..3:-0.344204820038;ATF2:-0.347752175377;NR5A1,2:-0.368667317561;FOX{D1,D2}:-0.39434017846;bHLH_family:-0.397822565329;NFIL3:-0.400010719859;HMGA1,2:-0.40117899506;ZBTB16:-0.422183421976;DBP:-0.435450106657;ALX1:-0.443338324632;PRRX1,2:-0.444938192915;T:-0.449434475016;BREu{core}:-0.458846357253;FOSL2:-0.462186777692;BACH2:-0.482637105641;NFIX:-0.492747044991;LMO2:-0.506197310374;POU1F1:-0.509725373613;NRF1:-0.515353509076;ELK1,4_GABP{A,B1}:-0.517211530649;SOX5:-0.519748248275;NFE2:-0.540524600922;ZFP161:-0.559019497289;CREB1:-0.593509326484;HOXA9_MEIS1:-0.608978653294;SPI1:-0.618055970626;DMAP1_NCOR{1,2}_SMARC:-0.63958513011;PAX3,7:-0.645979921472;MYB:-0.652526142273;NKX6-1,2:-0.66820256788;ATF4:-0.67127899821;TFDP1:-0.682872500017;SREBF1,2:-0.689178204527;IRF7:-0.704837993808;ZNF143:-0.704981274785;SNAI1..3:-0.71044747601;FOXQ1:-0.727396020294;ATF5_CREB3:-0.765556922106;PDX1:-0.791125425096;PITX1..3:-0.812043750425;PAX2:-0.855631953983;STAT5{A,B}:-0.864338893988;GFI1:-0.876962885805;FOXN1:-0.891498809943;ETS1,2:-0.892700084394;LEF1_TCF7_TCF7L1,2:-0.894478174123;SPIB:-0.898678377211;TGIF1:-0.899409096486;E2F1..5:-0.929876866062;RBPJ:-0.933327640011;PAX6:-0.935563235903;FOX{F1,F2,J1}:-0.980103149266;JUN:-0.98889605471;NKX2-3_NKX2-5:-1.00013287934;ELF1,2,4:-1.01420763396;HBP1_HMGB_SSRP1_UBTF:-1.01451956672;RFX2..5_RFXANK_RFXAP:-1.06259029197;ZEB1:-1.11748961914;FOXA2:-1.15282956276;RORA:-1.17791889727;CUX2:-1.20893572299;PBX1:-1.23163548643;ADNP_IRX_SIX_ZHX:-1.23699737781;IKZF2:-1.27953252672;GATA6:-1.31526673031;POU2F1..3:-1.32757947153;MYOD1:-1.3478018251;OCT4_SOX2{dimer}:-1.40333680134;SOX2:-1.60888234994;CRX:-1.67117250997;PAX8:-1.78220205528;NFY{A,B,C}:-1.78275164834;SOX{8,9,10}:-1.81142946051;NANOG:-2.64815230851 | |top_motifs=ALX4:2.13747548973;UFEwm:1.91376713201;EVI1:1.78011899723;KLF4:1.71235176243;ESR1:1.54583220234;FOXL1:1.5211594062;EN1,2:1.45136973316;SPZ1:1.340246889;MYBL2:1.24327680037;RXRA_VDR{dimer}:1.24067846405;NKX2-1,4:1.21573497113;ZNF238:1.20687822612;TAL1_TCF{3,4,12}:1.19125020724;GLI1..3:1.18814944437;RREB1:1.14779986723;RXR{A,B,G}:1.13518446953;FOXO1,3,4:1.12595273942;ATF6:1.1047404012;TEAD1:1.0910212661;PRDM1:1.05067212263;NKX3-1:1.04594723405;MTF1:1.0346445683;GZF1:1.03182697198;TFCP2:0.963025688891;IKZF1:0.950414783843;TLX1..3_NFIC{dimer}:0.927162964604;HSF1,2:0.900396336266;TFAP4:0.888892518147;HES1:0.869849861866;SMAD1..7,9:0.868158378846;GCM1,2:0.860655813445;PAX1,9:0.837016634299;ZNF423:0.823981539887;TEF:0.801114019548;GFI1B:0.799076230606;HOX{A4,D4}:0.776266300832;TOPORS:0.722000937329;ZIC1..3:0.713060977208;STAT2,4,6:0.693875233345;EBF1:0.674817676235;NFE2L1:0.6435839043;XBP1:0.636038396501;ESRRA:0.635347634343;NR6A1:0.620966275077;GTF2I:0.589333579744;NFATC1..3:0.586099599156;XCPE1{core}:0.583262401537;TFAP2B:0.577615824056;HMX1:0.574750884955;NKX2-2,8:0.560372551758;GATA4:0.560180918699;TP53:0.559471313776;IRF1,2:0.559432704802;HOX{A5,B5}:0.535137041008;CDX1,2,4:0.527633051787;NR1H4:0.519503125237;LHX3,4:0.493111609223;HAND1,2:0.483908056471;VSX1,2:0.482144836218;PAX5:0.459077453505;ZNF148:0.457350016944;SRF:0.399283781889;BPTF:0.375304583035;GTF2A1,2:0.360414070742;HOX{A6,A7,B6,B7}:0.34892213818;HLF:0.343369970173;TBP:0.342022442348;HIC1:0.335384205501;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.332233360196;MAFB:0.331712699041;TFAP2{A,C}:0.326537493609;FOXD3:0.308342486114;NR3C1:0.306808460552;AIRE:0.289431193777;MAZ:0.286056519851;NKX3-2:0.268399841549;ZNF384:0.234169707523;FOXM1:0.206757503518;AR:0.183658464655;TLX2:0.178135347984;YY1:0.172060713029;MYFfamily:0.150970030783;FOXP3:0.102455306971;PATZ1:0.0909669357526;ZBTB6:0.0900691478164;HIF1A:0.0789757641613;PPARG:0.0407290035467;CDC5L:0.0337622744275;RFX1:0.0260713809139;MED-1{core}:0.00874138812065;POU5F1:0.000351916471897;FOXP1:-0.00596461475085;MTE{core}:-0.0518622323812;TBX4,5:-0.0610355220875;NFKB1_REL_RELA:-0.0617013585129;PAX4:-0.0653631908811;EP300:-0.0680929289704;MZF1:-0.0778098600711;POU6F1:-0.0812697464943;MEF2{A,B,C,D}:-0.0853787737746;SOX17:-0.108742338472;REST:-0.110447979674;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.119964013603;NANOG{mouse}:-0.143707704729;ARID5B:-0.153389125932;CEBPA,B_DDIT3:-0.159189794884;NHLH1,2:-0.178796870816;FOX{I1,J2}:-0.194683208243;EGR1..3:-0.200028743196;HNF1A:-0.202687518684;AHR_ARNT_ARNT2:-0.210026543149;HNF4A_NR2F1,2:-0.25801304901;NFE2L2:-0.275026961704;STAT1,3:-0.283404790917;POU3F1..4:-0.306635445109;ONECUT1,2:-0.322911988088;FOS_FOS{B,L1}_JUN{B,D}:-0.334205372603;SP1:-0.338207416;RUNX1..3:-0.344204820038;ATF2:-0.347752175377;NR5A1,2:-0.368667317561;FOX{D1,D2}:-0.39434017846;bHLH_family:-0.397822565329;NFIL3:-0.400010719859;HMGA1,2:-0.40117899506;ZBTB16:-0.422183421976;DBP:-0.435450106657;ALX1:-0.443338324632;PRRX1,2:-0.444938192915;T:-0.449434475016;BREu{core}:-0.458846357253;FOSL2:-0.462186777692;BACH2:-0.482637105641;NFIX:-0.492747044991;LMO2:-0.506197310374;POU1F1:-0.509725373613;NRF1:-0.515353509076;ELK1,4_GABP{A,B1}:-0.517211530649;SOX5:-0.519748248275;NFE2:-0.540524600922;ZFP161:-0.559019497289;CREB1:-0.593509326484;HOXA9_MEIS1:-0.608978653294;SPI1:-0.618055970626;DMAP1_NCOR{1,2}_SMARC:-0.63958513011;PAX3,7:-0.645979921472;MYB:-0.652526142273;NKX6-1,2:-0.66820256788;ATF4:-0.67127899821;TFDP1:-0.682872500017;SREBF1,2:-0.689178204527;IRF7:-0.704837993808;ZNF143:-0.704981274785;SNAI1..3:-0.71044747601;FOXQ1:-0.727396020294;ATF5_CREB3:-0.765556922106;PDX1:-0.791125425096;PITX1..3:-0.812043750425;PAX2:-0.855631953983;STAT5{A,B}:-0.864338893988;GFI1:-0.876962885805;FOXN1:-0.891498809943;ETS1,2:-0.892700084394;LEF1_TCF7_TCF7L1,2:-0.894478174123;SPIB:-0.898678377211;TGIF1:-0.899409096486;E2F1..5:-0.929876866062;RBPJ:-0.933327640011;PAX6:-0.935563235903;FOX{F1,F2,J1}:-0.980103149266;JUN:-0.98889605471;NKX2-3_NKX2-5:-1.00013287934;ELF1,2,4:-1.01420763396;HBP1_HMGB_SSRP1_UBTF:-1.01451956672;RFX2..5_RFXANK_RFXAP:-1.06259029197;ZEB1:-1.11748961914;FOXA2:-1.15282956276;RORA:-1.17791889727;CUX2:-1.20893572299;PBX1:-1.23163548643;ADNP_IRX_SIX_ZHX:-1.23699737781;IKZF2:-1.27953252672;GATA6:-1.31526673031;POU2F1..3:-1.32757947153;MYOD1:-1.3478018251;OCT4_SOX2{dimer}:-1.40333680134;SOX2:-1.60888234994;CRX:-1.67117250997;PAX8:-1.78220205528;NFY{A,B,C}:-1.78275164834;SOX{8,9,10}:-1.81142946051;NANOG:-2.64815230851 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11440-118H9;search_select_hide=table117:FF:11440-118H9 | |||
}} | }} | ||
Latest revision as of 18:01, 4 June 2020
| Name: | Synoviocyte, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12050 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12050
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12050
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.603 |
| 10 | 10 | 0.221 |
| 100 | 100 | 0.6 |
| 101 | 101 | 0.729 |
| 102 | 102 | 0.0406 |
| 103 | 103 | 0.44 |
| 104 | 104 | 0.926 |
| 105 | 105 | 0.0903 |
| 106 | 106 | 0.457 |
| 107 | 107 | 0.206 |
| 108 | 108 | 0.111 |
| 109 | 109 | 0.473 |
| 11 | 11 | 0.231 |
| 110 | 110 | 0.205 |
| 111 | 111 | 0.455 |
| 112 | 112 | 0.293 |
| 113 | 113 | 0.261 |
| 114 | 114 | 0.119 |
| 115 | 115 | 0.0344 |
| 116 | 116 | 0.0108 |
| 117 | 117 | 0.913 |
| 118 | 118 | 0.48 |
| 119 | 119 | 0.444 |
| 12 | 12 | 0.169 |
| 120 | 120 | 0.746 |
| 121 | 121 | 0.0505 |
| 122 | 122 | 0.00742 |
| 123 | 123 | 0.103 |
| 124 | 124 | 0.395 |
| 125 | 125 | 0.824 |
| 126 | 126 | 0.498 |
| 127 | 127 | 0.772 |
| 128 | 128 | 0.174 |
| 129 | 129 | 0.879 |
| 13 | 13 | 0.628 |
| 130 | 130 | 0.205 |
| 131 | 131 | 0.41 |
| 132 | 132 | 0.0759 |
| 133 | 133 | 0.179 |
| 134 | 134 | 0.604 |
| 135 | 135 | 0.676 |
| 136 | 136 | 0.631 |
| 137 | 137 | 0.318 |
| 138 | 138 | 0.742 |
| 139 | 139 | 0.125 |
| 14 | 14 | 0.633 |
| 140 | 140 | 0.966 |
| 141 | 141 | 0.973 |
| 142 | 142 | 0.617 |
| 143 | 143 | 0.76 |
| 144 | 144 | 0.143 |
| 145 | 145 | 0.368 |
| 146 | 146 | 0.474 |
| 147 | 147 | 0.183 |
| 148 | 148 | 0.578 |
| 149 | 149 | 0.00335 |
| 15 | 15 | 0.981 |
| 150 | 150 | 0.477 |
| 151 | 151 | 0.323 |
| 152 | 152 | 0.0897 |
| 153 | 153 | 0.651 |
| 154 | 154 | 0.868 |
| 155 | 155 | 0.877 |
| 156 | 156 | 0.465 |
| 157 | 157 | 0.91 |
| 158 | 158 | 0.0719 |
| 159 | 159 | 0.992 |
| 16 | 16 | 0.0302 |
| 160 | 160 | 0.335 |
| 161 | 161 | 0.977 |
| 162 | 162 | 0.45 |
| 163 | 163 | 0.859 |
| 164 | 164 | 0.00896 |
| 165 | 165 | 0.737 |
| 166 | 166 | 0.103 |
| 167 | 167 | 0.614 |
| 168 | 168 | 0.177 |
| 169 | 169 | 0.00518 |
| 17 | 17 | 0.248 |
| 18 | 18 | 0.252 |
| 19 | 19 | 0.00232 |
| 2 | 2 | 0.182 |
| 20 | 20 | 0.681 |
| 21 | 21 | 0.128 |
| 22 | 22 | 0.117 |
| 23 | 23 | 0.211 |
| 24 | 24 | 0.0602 |
| 25 | 25 | 0.389 |
| 26 | 26 | 0.3 |
| 27 | 27 | 0.191 |
| 28 | 28 | 0.23 |
| 29 | 29 | 0.138 |
| 3 | 3 | 0.356 |
| 30 | 30 | 0.377 |
| 31 | 31 | 0.6 |
| 32 | 32 | 2.172e-14 |
| 33 | 33 | 0.848 |
| 34 | 34 | 0.49 |
| 35 | 35 | 0.995 |
| 36 | 36 | 0.0617 |
| 37 | 37 | 0.128 |
| 38 | 38 | 0.911 |
| 39 | 39 | 0.172 |
| 4 | 4 | 0.374 |
| 40 | 40 | 0.559 |
| 41 | 41 | 0.381 |
| 42 | 42 | 0.812 |
| 43 | 43 | 0.343 |
| 44 | 44 | 0.21 |
| 45 | 45 | 0.821 |
| 46 | 46 | 0.384 |
| 47 | 47 | 0.915 |
| 48 | 48 | 0.665 |
| 49 | 49 | 0.72 |
| 5 | 5 | 0.643 |
| 50 | 50 | 0.388 |
| 51 | 51 | 0.662 |
| 52 | 52 | 0.692 |
| 53 | 53 | 0.433 |
| 54 | 54 | 0.545 |
| 55 | 55 | 0.216 |
| 56 | 56 | 0.729 |
| 57 | 57 | 0.903 |
| 58 | 58 | 0.492 |
| 59 | 59 | 0.0516 |
| 6 | 6 | 0.511 |
| 60 | 60 | 0.36 |
| 61 | 61 | 0.636 |
| 62 | 62 | 0.897 |
| 63 | 63 | 0.141 |
| 64 | 64 | 0.918 |
| 65 | 65 | 0.328 |
| 66 | 66 | 0.0113 |
| 67 | 67 | 0.801 |
| 68 | 68 | 0.15 |
| 69 | 69 | 0.869 |
| 7 | 7 | 0.291 |
| 70 | 70 | 0.116 |
| 71 | 71 | 0.341 |
| 72 | 72 | 0.814 |
| 73 | 73 | 0.0513 |
| 74 | 74 | 0.16 |
| 75 | 75 | 0.456 |
| 76 | 76 | 0.459 |
| 77 | 77 | 3.25053e-4 |
| 78 | 78 | 0.191 |
| 79 | 79 | 3.02658e-4 |
| 8 | 8 | 0.0526 |
| 80 | 80 | 0.0637 |
| 81 | 81 | 0.61 |
| 82 | 82 | 0.322 |
| 83 | 83 | 0.0241 |
| 84 | 84 | 0.372 |
| 85 | 85 | 0.0486 |
| 86 | 86 | 0.495 |
| 87 | 87 | 0.795 |
| 88 | 88 | 0.0833 |
| 89 | 89 | 0.0108 |
| 9 | 9 | 0.311 |
| 90 | 90 | 0.339 |
| 91 | 91 | 0.697 |
| 92 | 92 | 0.104 |
| 93 | 93 | 0.723 |
| 94 | 94 | 0.343 |
| 95 | 95 | 0.734 |
| 96 | 96 | 0.673 |
| 97 | 97 | 0.448 |
| 98 | 98 | 0.426 |
| 99 | 99 | 0.023 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12050
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000187 human synovial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000214 (synovial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0006914 (squamous epithelium)
0004905 (articulation)
0000486 (multilaminar epithelium)
0006915 (stratified squamous epithelium)
0007616 (layer of synovial tissue)
0000042 (serous membrane)
0000982 (skeletal joint)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002217 (synovial joint)
0002018 (synovial membrane of synovial joint)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000187 (human synovial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)
