FF:11457-119A8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005796 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008123;DRR008995;DRZ000420;DRZ001805;DRZ011770;DRZ013155 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0009569,UBERON:0005178,UBERON:0000485,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0004815,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0002031,UBERON:0002185,UBERON:0000065,UBERON:0001558,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000082,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0002328 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000015 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor5.CNhs12058.11457-119A8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor5.CNhs12058.11457-119A8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor5.CNhs12058.11457-119A8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor5.CNhs12058.11457-119A8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor5.CNhs12058.11457-119A8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11457-119A8 | |id=FF:11457-119A8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000015 | ||
|is_obsolete= | |||
|library_id=CNhs12058 | |||
|library_id_phase_based=2:CNhs12058 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11457 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11457 | |||
|name=Bronchial Epithelial Cell, donor5 | |name=Bronchial Epithelial Cell, donor5 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12058,LSID838,release011,COMPLETED | |profile_hcage=CNhs12058,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.045972000002479,0,0.121624063110978,0.347085423819225,0,0,0,0,0,0,0,0,0.204774144577131,0,0.114346030083907,0,0,0.126256736756563,0,0,0,0.224139424621851,0,0.471515885964954,0,0,0.26602960552563,0,0,0,0,0,0,0,0,0,0,0,0,0.0329802087083423,0.113617880843337,0,0,0.492542688902604,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0.114346030083907,0.0173536688413019,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.114346030083907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127300524461913,0,0,0,0.0528832560487562,0.073539488420637,0,0,0,0,-0.0980353512377064,0.146259690315611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0392005788805075,0,0,0,0.0802977551085622,0.0728101519482274,0,0,0.0616577439536027,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=CA502-R10a | |rna_catalog_number=CA502-R10a | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=63 | |sample_age=63 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=U | |sample_ethnicity=U | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.61020616849155e-230!GO:0005737;cytoplasm;6.2997255250849e-200!GO:0043226;organelle;1.2564810406802e-178!GO:0043229;intracellular organelle;2.7307667702414e-178!GO:0043231;intracellular membrane-bound organelle;2.23642152983089e-165!GO:0043227;membrane-bound organelle;5.73433927114655e-165!GO:0044422;organelle part;4.96765066696032e-141!GO:0044446;intracellular organelle part;5.82548442854826e-140!GO:0044444;cytoplasmic part;2.37892976977478e-134!GO:0032991;macromolecular complex;5.12755618022666e-89!GO:0044238;primary metabolic process;2.78315752287869e-81!GO:0044237;cellular metabolic process;3.06381600879992e-80!GO:0030529;ribonucleoprotein complex;6.35808629683863e-76!GO:0005739;mitochondrion;8.31357877308172e-73!GO:0005515;protein binding;1.94090664580659e-71!GO:0043170;macromolecule metabolic process;1.8001696541991e-70!GO:0043233;organelle lumen;2.03957450999503e-63!GO:0031974;membrane-enclosed lumen;2.03957450999503e-63!GO:0044428;nuclear part;4.25881022154082e-59!GO:0005634;nucleus;2.33410537130645e-55!GO:0031090;organelle membrane;1.70902710754604e-54!GO:0003723;RNA binding;1.66386053752549e-53!GO:0019538;protein metabolic process;4.23489840727046e-52!GO:0005840;ribosome;7.4000113152789e-51!GO:0006412;translation;4.04833202683697e-50!GO:0009058;biosynthetic process;1.32843293507915e-49!GO:0044429;mitochondrial part;2.61108677149841e-48!GO:0043234;protein complex;1.00491471645156e-45!GO:0003735;structural constituent of ribosome;2.7989365283197e-45!GO:0044267;cellular protein metabolic process;4.61931718096734e-45!GO:0044249;cellular biosynthetic process;8.63017314797176e-45!GO:0044260;cellular macromolecule metabolic process;1.16101471705486e-44!GO:0016043;cellular component organization and biogenesis;7.21002422894008e-44!GO:0031967;organelle envelope;6.76109337061603e-43!GO:0031975;envelope;1.71468389574469e-42!GO:0009059;macromolecule biosynthetic process;2.88271943828523e-41!GO:0006396;RNA processing;5.37866444930085e-40!GO:0043228;non-membrane-bound organelle;2.21858361533976e-39!GO:0043232;intracellular non-membrane-bound organelle;2.21858361533976e-39!GO:0033279;ribosomal subunit;1.00905958862541e-38!GO:0015031;protein transport;1.09747744064465e-38!GO:0005829;cytosol;1.41735805351385e-38!GO:0033036;macromolecule localization;1.39429484968647e-37!GO:0031981;nuclear lumen;3.21897450056654e-36!GO:0043283;biopolymer metabolic process;1.25773837123426e-35!GO:0008104;protein localization;1.74369554345051e-35!GO:0045184;establishment of protein localization;3.27375585240701e-35!GO:0065003;macromolecular complex assembly;4.4320934288103e-34!GO:0006996;organelle organization and biogenesis;2.70971742123838e-33!GO:0046907;intracellular transport;2.23830003083762e-32!GO:0005740;mitochondrial envelope;4.14522002240428e-32!GO:0031966;mitochondrial membrane;6.1025852287727e-30!GO:0022607;cellular component assembly;7.59107217312955e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.83516263415541e-29!GO:0019866;organelle inner membrane;3.15899569752405e-28!GO:0010467;gene expression;4.2352171625278e-28!GO:0016071;mRNA metabolic process;4.85007174549744e-28!GO:0006886;intracellular protein transport;7.45843427932459e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.68991181842839e-27!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.59316464707428e-27!GO:0005743;mitochondrial inner membrane;1.93195694799172e-26!GO:0008380;RNA splicing;1.35287944079781e-25!GO:0006259;DNA metabolic process;2.15430904814033e-25!GO:0006397;mRNA processing;5.76513288428967e-24!GO:0044445;cytosolic part;2.50966059364743e-23!GO:0012505;endomembrane system;3.9657023728703e-22!GO:0051649;establishment of cellular localization;2.16976564293494e-21!GO:0051641;cellular localization;3.20835309456837e-21!GO:0000166;nucleotide binding;9.69122970792999e-21!GO:0015934;large ribosomal subunit;1.12590947333252e-20!GO:0005654;nucleoplasm;2.31846090941041e-20!GO:0031980;mitochondrial lumen;4.30460373126815e-20!GO:0005759;mitochondrial matrix;4.30460373126815e-20!GO:0044455;mitochondrial membrane part;4.30460373126815e-20!GO:0007049;cell cycle;5.31145365982224e-20!GO:0006119;oxidative phosphorylation;1.45817760556186e-19!GO:0005681;spliceosome;2.98274112612485e-19!GO:0016874;ligase activity;3.9155207866854e-19!GO:0015935;small ribosomal subunit;4.22371098148654e-19!GO:0016462;pyrophosphatase activity;8.64036474730239e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.13670944810222e-18!GO:0005783;endoplasmic reticulum;1.36276549225503e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;1.36276549225503e-18!GO:0051186;cofactor metabolic process;1.3130549009937e-17!GO:0017111;nucleoside-triphosphatase activity;1.34970110792831e-17!GO:0005730;nucleolus;1.59243166237267e-17!GO:0048770;pigment granule;2.46954455572927e-17!GO:0042470;melanosome;2.46954455572927e-17!GO:0044432;endoplasmic reticulum part;1.10598263424208e-16!GO:0044451;nucleoplasm part;1.10598263424208e-16!GO:0006457;protein folding;1.15090041416277e-16!GO:0043412;biopolymer modification;3.92475131018605e-16!GO:0032553;ribonucleotide binding;1.49944303657192e-15!GO:0032555;purine ribonucleotide binding;1.49944303657192e-15!GO:0022402;cell cycle process;1.73293507779079e-15!GO:0017076;purine nucleotide binding;2.12964487667663e-15!GO:0006605;protein targeting;3.59118234214893e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.97928470097244e-15!GO:0000278;mitotic cell cycle;4.14794646908436e-15!GO:0005746;mitochondrial respiratory chain;8.64354700360508e-15!GO:0005794;Golgi apparatus;1.18313112681002e-14!GO:0006464;protein modification process;1.18313112681002e-14!GO:0006512;ubiquitin cycle;1.1980688540588e-14!GO:0044248;cellular catabolic process;2.16270791064279e-14!GO:0022618;protein-RNA complex assembly;2.1873117511068e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.35932792201764e-14!GO:0044265;cellular macromolecule catabolic process;2.75919304528616e-14!GO:0006732;coenzyme metabolic process;4.21958730681456e-14!GO:0008134;transcription factor binding;4.75557191417641e-14!GO:0009057;macromolecule catabolic process;8.86845350218414e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.15797221841364e-13!GO:0005524;ATP binding;1.1678854704681e-13!GO:0032559;adenyl ribonucleotide binding;1.19528957025283e-13!GO:0043285;biopolymer catabolic process;1.34403864778347e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.82886286881567e-13!GO:0003954;NADH dehydrogenase activity;1.82886286881567e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.82886286881567e-13!GO:0030554;adenyl nucleotide binding;2.42504304606314e-13!GO:0000502;proteasome complex (sensu Eukaryota);3.0747583046641e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.0060171617211e-13!GO:0042254;ribosome biogenesis and assembly;6.89459672504169e-13!GO:0005761;mitochondrial ribosome;7.08023726561254e-13!GO:0000313;organellar ribosome;7.08023726561254e-13!GO:0005789;endoplasmic reticulum membrane;8.33432625114333e-13!GO:0006461;protein complex assembly;1.25629734668933e-12!GO:0043687;post-translational protein modification;1.84623535376458e-12!GO:0051082;unfolded protein binding;2.00782117537548e-12!GO:0006399;tRNA metabolic process;2.01692435592636e-12!GO:0012501;programmed cell death;2.39493870761121e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;3.80588600153439e-12!GO:0006915;apoptosis;4.12157666427788e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.01600026672355e-12!GO:0019941;modification-dependent protein catabolic process;6.04001147863163e-12!GO:0043632;modification-dependent macromolecule catabolic process;6.04001147863163e-12!GO:0044257;cellular protein catabolic process;6.78894147000076e-12!GO:0006511;ubiquitin-dependent protein catabolic process;9.27688398350363e-12!GO:0030964;NADH dehydrogenase complex (quinone);9.29196499068995e-12!GO:0045271;respiratory chain complex I;9.29196499068995e-12!GO:0005747;mitochondrial respiratory chain complex I;9.29196499068995e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.15813744918204e-11!GO:0042773;ATP synthesis coupled electron transport;1.15813744918204e-11!GO:0005635;nuclear envelope;1.5387486323922e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.68719259262408e-11!GO:0051276;chromosome organization and biogenesis;1.76863036536264e-11!GO:0030163;protein catabolic process;2.18370031879869e-11!GO:0008135;translation factor activity, nucleic acid binding;2.45643655100807e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.19047817646689e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;3.20036361973405e-11!GO:0000375;RNA splicing, via transesterification reactions;3.20036361973405e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.20036361973405e-11!GO:0048193;Golgi vesicle transport;3.60839103257535e-11!GO:0009055;electron carrier activity;4.31599779527148e-11!GO:0003676;nucleic acid binding;4.31599779527148e-11!GO:0005694;chromosome;5.33735943723196e-11!GO:0006974;response to DNA damage stimulus;6.77553838618675e-11!GO:0031965;nuclear membrane;7.16493911230586e-11!GO:0000087;M phase of mitotic cell cycle;8.35736230052156e-11!GO:0007067;mitosis;9.81037491099237e-11!GO:0006323;DNA packaging;1.03907698724396e-10!GO:0044427;chromosomal part;1.37809290997409e-10!GO:0008219;cell death;1.48461263475785e-10!GO:0016265;death;1.48461263475785e-10!GO:0006913;nucleocytoplasmic transport;1.85900470655854e-10!GO:0044453;nuclear membrane part;2.11586338922793e-10!GO:0022403;cell cycle phase;2.31257534766382e-10!GO:0051188;cofactor biosynthetic process;3.25059260072077e-10!GO:0016192;vesicle-mediated transport;3.59248289255851e-10!GO:0051169;nuclear transport;4.17620314599416e-10!GO:0006260;DNA replication;4.33819389433158e-10!GO:0000074;regulation of progression through cell cycle;7.77113356462843e-10!GO:0008565;protein transporter activity;7.83742398510216e-10!GO:0051726;regulation of cell cycle;8.74551568463015e-10!GO:0009056;catabolic process;1.09162814632205e-09!GO:0009259;ribonucleotide metabolic process;1.21340650350965e-09!GO:0016070;RNA metabolic process;1.32134951759542e-09!GO:0016740;transferase activity;1.33157476285374e-09!GO:0000785;chromatin;1.81944588737363e-09!GO:0017038;protein import;1.89496979413691e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.68947615013208e-09!GO:0042623;ATPase activity, coupled;2.68947615013208e-09!GO:0006364;rRNA processing;2.91440030539208e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.07747474298282e-09!GO:0004812;aminoacyl-tRNA ligase activity;3.07747474298282e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.07747474298282e-09!GO:0006163;purine nucleotide metabolic process;3.60489176581994e-09!GO:0006413;translational initiation;3.63868207029752e-09!GO:0043067;regulation of programmed cell death;3.75148541007807e-09!GO:0016887;ATPase activity;4.585701734969e-09!GO:0003712;transcription cofactor activity;4.86731033315806e-09!GO:0042981;regulation of apoptosis;4.86731033315806e-09!GO:0006281;DNA repair;5.46420593825792e-09!GO:0009150;purine ribonucleotide metabolic process;5.62977384071248e-09!GO:0007005;mitochondrion organization and biogenesis;5.91604747329256e-09!GO:0006446;regulation of translational initiation;6.57087491354597e-09!GO:0003743;translation initiation factor activity;6.98942819892309e-09!GO:0016072;rRNA metabolic process;7.47976844302135e-09!GO:0008639;small protein conjugating enzyme activity;8.14058057317111e-09!GO:0016491;oxidoreductase activity;9.66223473179415e-09!GO:0043038;amino acid activation;1.05144873761454e-08!GO:0006418;tRNA aminoacylation for protein translation;1.05144873761454e-08!GO:0043039;tRNA aminoacylation;1.05144873761454e-08!GO:0005793;ER-Golgi intermediate compartment;1.37770530477669e-08!GO:0048475;coated membrane;1.38531032802882e-08!GO:0030117;membrane coat;1.38531032802882e-08!GO:0005643;nuclear pore;1.48451767290263e-08!GO:0009141;nucleoside triphosphate metabolic process;1.71956719851794e-08!GO:0009260;ribonucleotide biosynthetic process;1.7513751903686e-08!GO:0004842;ubiquitin-protein ligase activity;1.92439697380033e-08!GO:0030120;vesicle coat;1.96397745132904e-08!GO:0030662;coated vesicle membrane;1.96397745132904e-08!GO:0006164;purine nucleotide biosynthetic process;2.29376507407382e-08!GO:0065004;protein-DNA complex assembly;2.58187058632832e-08!GO:0009719;response to endogenous stimulus;2.78708935455326e-08!GO:0016604;nuclear body;2.86121909077594e-08!GO:0006333;chromatin assembly or disassembly;3.17051281179672e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.26561692145752e-08!GO:0019787;small conjugating protein ligase activity;3.26561692145752e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.40001910430027e-08!GO:0005768;endosome;3.50120055004163e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.52640626236494e-08!GO:0065002;intracellular protein transport across a membrane;3.78554444313121e-08!GO:0000279;M phase;3.92532257565102e-08!GO:0009199;ribonucleoside triphosphate metabolic process;4.3205347535159e-08!GO:0009108;coenzyme biosynthetic process;6.18016530549645e-08!GO:0030532;small nuclear ribonucleoprotein complex;6.89130821588111e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.89130821588111e-08!GO:0051301;cell division;9.23308622108611e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.61260649426421e-08!GO:0009144;purine nucleoside triphosphate metabolic process;9.61260649426421e-08!GO:0009142;nucleoside triphosphate biosynthetic process;9.99277586976778e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.99277586976778e-08!GO:0048523;negative regulation of cellular process;1.11000797754161e-07!GO:0006334;nucleosome assembly;1.24387484939682e-07!GO:0016881;acid-amino acid ligase activity;1.45050761875002e-07!GO:0016787;hydrolase activity;1.45050761875002e-07!GO:0031497;chromatin assembly;2.2736382610612e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.28485266072135e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.28485266072135e-07!GO:0015986;ATP synthesis coupled proton transport;2.5663666179418e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.5663666179418e-07!GO:0009060;aerobic respiration;3.16862410630408e-07!GO:0046930;pore complex;3.2868553750877e-07!GO:0051246;regulation of protein metabolic process;3.54047471519033e-07!GO:0044431;Golgi apparatus part;3.64011270416698e-07!GO:0043623;cellular protein complex assembly;4.02087137530384e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.12366151590237e-07!GO:0016779;nucleotidyltransferase activity;4.22092178871832e-07!GO:0006366;transcription from RNA polymerase II promoter;5.04483333851263e-07!GO:0009117;nucleotide metabolic process;6.03040792431094e-07!GO:0004386;helicase activity;6.28640179562997e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.51747549400749e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.04113432847781e-06!GO:0003924;GTPase activity;1.20098970448677e-06!GO:0043069;negative regulation of programmed cell death;1.32080055853872e-06!GO:0046034;ATP metabolic process;1.41255081957787e-06!GO:0006793;phosphorus metabolic process;1.52559436809492e-06!GO:0006796;phosphate metabolic process;1.52559436809492e-06!GO:0008026;ATP-dependent helicase activity;1.56758274135237e-06!GO:0048519;negative regulation of biological process;1.74611933801514e-06!GO:0006916;anti-apoptosis;2.32098234749323e-06!GO:0019829;cation-transporting ATPase activity;2.69315313407852e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.79361649961509e-06!GO:0045333;cellular respiration;2.87840733889411e-06!GO:0006754;ATP biosynthetic process;3.02873480250278e-06!GO:0006753;nucleoside phosphate metabolic process;3.02873480250278e-06!GO:0051170;nuclear import;3.08926381715359e-06!GO:0043066;negative regulation of apoptosis;3.16092386022139e-06!GO:0006752;group transfer coenzyme metabolic process;3.62259573158345e-06!GO:0006099;tricarboxylic acid cycle;4.07211009827639e-06!GO:0046356;acetyl-CoA catabolic process;4.07211009827639e-06!GO:0045259;proton-transporting ATP synthase complex;4.73402749233144e-06!GO:0016607;nuclear speck;5.36977269962266e-06!GO:0006606;protein import into nucleus;5.36977269962266e-06!GO:0006888;ER to Golgi vesicle-mediated transport;6.83592860161693e-06!GO:0005773;vacuole;7.72564765332435e-06!GO:0051187;cofactor catabolic process;8.10716219069154e-06!GO:0016568;chromatin modification;8.1342902024193e-06!GO:0000139;Golgi membrane;8.1342902024193e-06!GO:0009109;coenzyme catabolic process;9.16160966484634e-06!GO:0006084;acetyl-CoA metabolic process;9.552690811859e-06!GO:0006091;generation of precursor metabolites and energy;1.18513906370396e-05!GO:0015630;microtubule cytoskeleton;1.205384075685e-05!GO:0016567;protein ubiquitination;1.25731146565798e-05!GO:0032446;protein modification by small protein conjugation;1.25731146565798e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.26388703158319e-05!GO:0050657;nucleic acid transport;1.52170589997977e-05!GO:0051236;establishment of RNA localization;1.52170589997977e-05!GO:0050658;RNA transport;1.52170589997977e-05!GO:0006403;RNA localization;1.69759264569836e-05!GO:0005762;mitochondrial large ribosomal subunit;1.74857157836223e-05!GO:0000315;organellar large ribosomal subunit;1.74857157836223e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.97374140256147e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.99313144381518e-05!GO:0000786;nucleosome;2.50304398412457e-05!GO:0008654;phospholipid biosynthetic process;2.54251451110047e-05!GO:0031988;membrane-bound vesicle;2.62187846998642e-05!GO:0003899;DNA-directed RNA polymerase activity;2.70145173966547e-05!GO:0016310;phosphorylation;2.7575056586948e-05!GO:0003697;single-stranded DNA binding;2.941402724093e-05!GO:0016853;isomerase activity;3.17412243706093e-05!GO:0044440;endosomal part;3.27568173175589e-05!GO:0010008;endosome membrane;3.27568173175589e-05!GO:0048522;positive regulation of cellular process;3.27568173175589e-05!GO:0005905;coated pit;3.35419205769615e-05!GO:0005798;Golgi-associated vesicle;3.37108917304867e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.53011787321429e-05!GO:0030118;clathrin coat;3.58587005956931e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.66146505961612e-05!GO:0000245;spliceosome assembly;4.27097967925428e-05!GO:0000323;lytic vacuole;4.44337558065904e-05!GO:0005764;lysosome;4.44337558065904e-05!GO:0008033;tRNA processing;4.77068238700753e-05!GO:0005667;transcription factor complex;4.80987533481763e-05!GO:0045454;cell redox homeostasis;5.29093925663074e-05!GO:0005788;endoplasmic reticulum lumen;5.36340090647337e-05!GO:0042802;identical protein binding;6.01382524005696e-05!GO:0005770;late endosome;6.60044383423437e-05!GO:0051329;interphase of mitotic cell cycle;6.94158632080028e-05!GO:0006839;mitochondrial transport;7.41641661987163e-05!GO:0050794;regulation of cellular process;7.52588028397952e-05!GO:0031252;leading edge;8.95665828782122e-05!GO:0003714;transcription corepressor activity;9.16313644917266e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000102448706741506!GO:0016126;sterol biosynthetic process;0.000106609963927181!GO:0031968;organelle outer membrane;0.000107374429837074!GO:0005525;GTP binding;0.00011186166881251!GO:0031410;cytoplasmic vesicle;0.000115438311461188!GO:0051427;hormone receptor binding;0.00012314213560093!GO:0019867;outer membrane;0.00012314213560093!GO:0031982;vesicle;0.000123648493500234!GO:0005819;spindle;0.000130549970090501!GO:0043566;structure-specific DNA binding;0.000135373106250743!GO:0030132;clathrin coat of coated pit;0.000135758190236211!GO:0065009;regulation of a molecular function;0.000139666017660069!GO:0045786;negative regulation of progression through cell cycle;0.000152857077317315!GO:0030176;integral to endoplasmic reticulum membrane;0.000162201236118864!GO:0051325;interphase;0.000166096789291874!GO:0003713;transcription coactivator activity;0.000197897404928304!GO:0019899;enzyme binding;0.00020329261109523!GO:0009967;positive regulation of signal transduction;0.000216371158290918!GO:0005741;mitochondrial outer membrane;0.000221487622411785!GO:0006626;protein targeting to mitochondrion;0.000221973819256778!GO:0004298;threonine endopeptidase activity;0.000222954103745334!GO:0030119;AP-type membrane coat adaptor complex;0.000227750004328704!GO:0007243;protein kinase cascade;0.00022963894592592!GO:0031324;negative regulation of cellular metabolic process;0.000242064715048656!GO:0035257;nuclear hormone receptor binding;0.000246088081028461!GO:0051028;mRNA transport;0.000250071480318945!GO:0007010;cytoskeleton organization and biogenesis;0.00025777607392813!GO:0008610;lipid biosynthetic process;0.000272139372213124!GO:0007006;mitochondrial membrane organization and biogenesis;0.000280126678725259!GO:0030867;rough endoplasmic reticulum membrane;0.000301368534666146!GO:0030131;clathrin adaptor complex;0.00031727924672721!GO:0033116;ER-Golgi intermediate compartment membrane;0.000347079215152765!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000349360342572902!GO:0003724;RNA helicase activity;0.000357486503629827!GO:0005769;early endosome;0.000379711170584847!GO:0005813;centrosome;0.000386790854075304!GO:0043681;protein import into mitochondrion;0.000408189397929658!GO:0016564;transcription repressor activity;0.0004175652414972!GO:0016563;transcription activator activity;0.000420476454369457!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000442333050125676!GO:0006261;DNA-dependent DNA replication;0.000469056165981459!GO:0005048;signal sequence binding;0.00057475771178969!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00057955180919874!GO:0048471;perinuclear region of cytoplasm;0.00057955180919874!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000624227690594699!GO:0030658;transport vesicle membrane;0.000637423886129038!GO:0006082;organic acid metabolic process;0.000657951181437148!GO:0005791;rough endoplasmic reticulum;0.00068829883006136!GO:0000314;organellar small ribosomal subunit;0.000709433888019437!GO:0005763;mitochondrial small ribosomal subunit;0.000709433888019437!GO:0019752;carboxylic acid metabolic process;0.000752927955713963!GO:0008632;apoptotic program;0.000757747631472279!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000870269215519464!GO:0030036;actin cytoskeleton organization and biogenesis;0.00087124741483177!GO:0000151;ubiquitin ligase complex;0.000898074984526205!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000909580770584261!GO:0006613;cotranslational protein targeting to membrane;0.00092818666002869!GO:0005815;microtubule organizing center;0.000933442922943717!GO:0046474;glycerophospholipid biosynthetic process;0.0009541670643391!GO:0006979;response to oxidative stress;0.000974465065593271!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00106531076526842!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00107190723906226!GO:0048518;positive regulation of biological process;0.00108702498025015!GO:0044452;nucleolar part;0.00110042252476368!GO:0016044;membrane organization and biogenesis;0.00111880655522975!GO:0006695;cholesterol biosynthetic process;0.00114431713332356!GO:0019843;rRNA binding;0.00114910388715882!GO:0030125;clathrin vesicle coat;0.00117066565333381!GO:0030665;clathrin coated vesicle membrane;0.00117066565333381!GO:0009165;nucleotide biosynthetic process;0.00122010270187568!GO:0051920;peroxiredoxin activity;0.00122211551989527!GO:0007264;small GTPase mediated signal transduction;0.00122328678968422!GO:0008250;oligosaccharyl transferase complex;0.0012261338024966!GO:0016859;cis-trans isomerase activity;0.00138822006856927!GO:0009892;negative regulation of metabolic process;0.00139574977881351!GO:0008092;cytoskeletal protein binding;0.00142852390578114!GO:0032561;guanyl ribonucleotide binding;0.00142852390578114!GO:0019001;guanyl nucleotide binding;0.00142852390578114!GO:0051168;nuclear export;0.00143199187531339!GO:0051252;regulation of RNA metabolic process;0.00148561249417142!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00152018533125333!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00152370173828189!GO:0007088;regulation of mitosis;0.00153505528206826!GO:0000059;protein import into nucleus, docking;0.00169337948531973!GO:0005885;Arp2/3 protein complex;0.00170722469905327!GO:0030880;RNA polymerase complex;0.00174128784292349!GO:0043488;regulation of mRNA stability;0.0017751132893533!GO:0043487;regulation of RNA stability;0.0017751132893533!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.001900868183116!GO:0030660;Golgi-associated vesicle membrane;0.00208482199455689!GO:0003684;damaged DNA binding;0.00228202546786142!GO:0006414;translational elongation;0.00229435659338122!GO:0004576;oligosaccharyl transferase activity;0.00250173812446389!GO:0051789;response to protein stimulus;0.00250173812446389!GO:0006986;response to unfolded protein;0.00250173812446389!GO:0046483;heterocycle metabolic process;0.00252606905157368!GO:0043021;ribonucleoprotein binding;0.00253018583788269!GO:0008094;DNA-dependent ATPase activity;0.00260206072423211!GO:0030029;actin filament-based process;0.0028047446298324!GO:0006520;amino acid metabolic process;0.00281142746865011!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0028339953395792!GO:0015399;primary active transmembrane transporter activity;0.0028339953395792!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00283885613515881!GO:0030133;transport vesicle;0.00285805859148452!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00289507378663845!GO:0044262;cellular carbohydrate metabolic process;0.00304920554929915!GO:0016481;negative regulation of transcription;0.00317964711398108!GO:0015980;energy derivation by oxidation of organic compounds;0.00317964711398108!GO:0005684;U2-dependent spliceosome;0.00322641998209556!GO:0008186;RNA-dependent ATPase activity;0.00335043813800734!GO:0018196;peptidyl-asparagine modification;0.00347777076657842!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00347777076657842!GO:0000075;cell cycle checkpoint;0.0035377377396102!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00359295068536659!GO:0006595;polyamine metabolic process;0.00369003489858323!GO:0006402;mRNA catabolic process;0.00374869124990834!GO:0043065;positive regulation of apoptosis;0.0037947662208845!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0039735239495686!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00398410777686119!GO:0000428;DNA-directed RNA polymerase complex;0.00398410777686119!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00398410777686119!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00398410777686119!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00398410777686119!GO:0046489;phosphoinositide biosynthetic process;0.00399731222410738!GO:0043068;positive regulation of programmed cell death;0.00408427583349261!GO:0005856;cytoskeleton;0.00409253459378113!GO:0017166;vinculin binding;0.00418514092419812!GO:0008139;nuclear localization sequence binding;0.00430104125047607!GO:0001726;ruffle;0.00446234928446802!GO:0030663;COPI coated vesicle membrane;0.00449543680862528!GO:0030126;COPI vesicle coat;0.00449543680862528!GO:0004674;protein serine/threonine kinase activity;0.00460162760723907!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00464928359458645!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00464928359458645!GO:0030031;cell projection biogenesis;0.00467769027735667!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00496460071148033!GO:0050662;coenzyme binding;0.00498773107382731!GO:0016125;sterol metabolic process;0.00503761741034432!GO:0051098;regulation of binding;0.00504190257384695!GO:0006730;one-carbon compound metabolic process;0.00511071958608916!GO:0031301;integral to organelle membrane;0.00511071958608916!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00516552875230953!GO:0050790;regulation of catalytic activity;0.00522063557200671!GO:0005657;replication fork;0.0052369482268904!GO:0006401;RNA catabolic process;0.00533078496621991!GO:0005774;vacuolar membrane;0.00534239660068076!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00543351674854462!GO:0046467;membrane lipid biosynthetic process;0.00544799999225689!GO:0007051;spindle organization and biogenesis;0.00561923766121034!GO:0015992;proton transport;0.00561923766121034!GO:0006118;electron transport;0.00565091867072447!GO:0003678;DNA helicase activity;0.00565272944397955!GO:0006818;hydrogen transport;0.00582447783777065!GO:0005874;microtubule;0.005828186952158!GO:0015631;tubulin binding;0.00590185143180711!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00605068814141257!GO:0035258;steroid hormone receptor binding;0.00636677470079826!GO:0045941;positive regulation of transcription;0.00643226454742802!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00656967401301102!GO:0006778;porphyrin metabolic process;0.00676019459342764!GO:0033013;tetrapyrrole metabolic process;0.00676019459342764!GO:0004004;ATP-dependent RNA helicase activity;0.00733571236840763!GO:0000049;tRNA binding;0.00770765540439397!GO:0050789;regulation of biological process;0.00771146217556489!GO:0030659;cytoplasmic vesicle membrane;0.00772893494936602!GO:0030137;COPI-coated vesicle;0.00778265326442207!GO:0006612;protein targeting to membrane;0.00782396794528667!GO:0046519;sphingoid metabolic process;0.00803431336399458!GO:0030134;ER to Golgi transport vesicle;0.00812259738465586!GO:0016791;phosphoric monoester hydrolase activity;0.00825837527344262!GO:0006891;intra-Golgi vesicle-mediated transport;0.00841557065804187!GO:0045893;positive regulation of transcription, DNA-dependent;0.0084394233866344!GO:0048468;cell development;0.00884132993825575!GO:0030145;manganese ion binding;0.00899064798805061!GO:0006066;alcohol metabolic process;0.00899064798805061!GO:0000287;magnesium ion binding;0.00913040563679766!GO:0031072;heat shock protein binding;0.00913754476966456!GO:0016311;dephosphorylation;0.0093774879037715!GO:0006779;porphyrin biosynthetic process;0.00968453158273764!GO:0033014;tetrapyrrole biosynthetic process;0.00968453158273764!GO:0006650;glycerophospholipid metabolic process;0.0101182942929438!GO:0016197;endosome transport;0.0101787754730666!GO:0048037;cofactor binding;0.0103744632001349!GO:0006611;protein export from nucleus;0.0103806210561108!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0112833487643363!GO:0005637;nuclear inner membrane;0.0113517756300105!GO:0005149;interleukin-1 receptor binding;0.0113638249775533!GO:0008637;apoptotic mitochondrial changes;0.0120195564909449!GO:0048487;beta-tubulin binding;0.0121062331272291!GO:0051101;regulation of DNA binding;0.0121071882836588!GO:0043414;biopolymer methylation;0.0121071882836588!GO:0006917;induction of apoptosis;0.0122009175667663!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0122879263576911!GO:0051540;metal cluster binding;0.0123043821268014!GO:0051536;iron-sulfur cluster binding;0.0123043821268014!GO:0045334;clathrin-coated endocytic vesicle;0.0124868190131802!GO:0009166;nucleotide catabolic process;0.0125417139351049!GO:0006509;membrane protein ectodomain proteolysis;0.0127652370785862!GO:0033619;membrane protein proteolysis;0.0127652370785862!GO:0044437;vacuolar part;0.0127960184551218!GO:0030128;clathrin coat of endocytic vesicle;0.0129621739331548!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0129621739331548!GO:0030122;AP-2 adaptor complex;0.0129621739331548!GO:0032508;DNA duplex unwinding;0.0129885331014094!GO:0032392;DNA geometric change;0.0129885331014094!GO:0005765;lysosomal membrane;0.0129885331014094!GO:0004721;phosphoprotein phosphatase activity;0.0131268156682998!GO:0046822;regulation of nucleocytoplasmic transport;0.0131307177683077!GO:0006007;glucose catabolic process;0.0131468585486555!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0134428881464381!GO:0031529;ruffle organization and biogenesis;0.013472284118212!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0136470222237608!GO:0031902;late endosome membrane;0.0139402492636383!GO:0043284;biopolymer biosynthetic process;0.0139526010938856!GO:0048144;fibroblast proliferation;0.0141485921924873!GO:0048145;regulation of fibroblast proliferation;0.0141485921924873!GO:0043492;ATPase activity, coupled to movement of substances;0.0141485921924873!GO:0004518;nuclease activity;0.0143273992116884!GO:0003729;mRNA binding;0.0144185460736296!GO:0003690;double-stranded DNA binding;0.0145816790121768!GO:0030127;COPII vesicle coat;0.0149044632748277!GO:0012507;ER to Golgi transport vesicle membrane;0.0149044632748277!GO:0006284;base-excision repair;0.0149727955286802!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.015305984094133!GO:0008243;plasminogen activator activity;0.0155344640153559!GO:0000082;G1/S transition of mitotic cell cycle;0.0155344640153559!GO:0012502;induction of programmed cell death;0.0156088187580978!GO:0006749;glutathione metabolic process;0.0157564412134317!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0158116380345907!GO:0005832;chaperonin-containing T-complex;0.0160391684709843!GO:0044255;cellular lipid metabolic process;0.0163694902842276!GO:0008361;regulation of cell size;0.0164415804446059!GO:0030027;lamellipodium;0.0164542501137054!GO:0044433;cytoplasmic vesicle part;0.0164548406022412!GO:0016741;transferase activity, transferring one-carbon groups;0.0164548406022412!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0168684315808809!GO:0031272;regulation of pseudopodium formation;0.0168684315808809!GO:0031269;pseudopodium formation;0.0168684315808809!GO:0031344;regulation of cell projection organization and biogenesis;0.0168684315808809!GO:0031268;pseudopodium organization and biogenesis;0.0168684315808809!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0168684315808809!GO:0031274;positive regulation of pseudopodium formation;0.0168684315808809!GO:0006383;transcription from RNA polymerase III promoter;0.0168749060477207!GO:0006672;ceramide metabolic process;0.0170403753692543!GO:0016301;kinase activity;0.0172260915753121!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0172415071924205!GO:0042168;heme metabolic process;0.0174697431575805!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0176821619822182!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0184285781972438!GO:0016049;cell growth;0.0184798224374633!GO:0008213;protein amino acid alkylation;0.0184997570425358!GO:0006479;protein amino acid methylation;0.0184997570425358!GO:0006740;NADPH regeneration;0.0186419798715185!GO:0006098;pentose-phosphate shunt;0.0186419798715185!GO:0008168;methyltransferase activity;0.0186604842611694!GO:0006417;regulation of translation;0.0188877776655217!GO:0006519;amino acid and derivative metabolic process;0.0190520087815733!GO:0006643;membrane lipid metabolic process;0.0191504038135583!GO:0030833;regulation of actin filament polymerization;0.019159821164285!GO:0009116;nucleoside metabolic process;0.0191821701771043!GO:0005869;dynactin complex;0.0195631194332785!GO:0008652;amino acid biosynthetic process;0.0199726975348405!GO:0006354;RNA elongation;0.0199782628662422!GO:0043189;H4/H2A histone acetyltransferase complex;0.0199782628662422!GO:0050178;phenylpyruvate tautomerase activity;0.0206748652986556!GO:0051087;chaperone binding;0.0206748652986556!GO:0016363;nuclear matrix;0.0207598378065887!GO:0051287;NAD binding;0.0207868091092348!GO:0048146;positive regulation of fibroblast proliferation;0.0216372279706729!GO:0007265;Ras protein signal transduction;0.0217901646246753!GO:0003711;transcription elongation regulator activity;0.0217901646246753!GO:0030433;ER-associated protein catabolic process;0.0218487307014858!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0218487307014858!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0222023033806187!GO:0006405;RNA export from nucleus;0.0223334651733304!GO:0006950;response to stress;0.0227344082850389!GO:0006268;DNA unwinding during replication;0.0230674418666641!GO:0008538;proteasome activator activity;0.0231443985019691!GO:0035035;histone acetyltransferase binding;0.0233378504179335!GO:0051539;4 iron, 4 sulfur cluster binding;0.0233776149662941!GO:0032259;methylation;0.0240607590156113!GO:0006458;'de novo' protein folding;0.0240607590156113!GO:0051084;'de novo' posttranslational protein folding;0.0240607590156113!GO:0006733;oxidoreduction coenzyme metabolic process;0.0243778861098917!GO:0009112;nucleobase metabolic process;0.0245981077985277!GO:0003682;chromatin binding;0.0245981077985277!GO:0006783;heme biosynthetic process;0.0246344067954334!GO:0046426;negative regulation of JAK-STAT cascade;0.0253138329145389!GO:0006506;GPI anchor biosynthetic process;0.0253138329145389!GO:0009303;rRNA transcription;0.0255597486174957!GO:0004527;exonuclease activity;0.026027744547033!GO:0003746;translation elongation factor activity;0.026239220816393!GO:0000209;protein polyubiquitination;0.0276858144827757!GO:0035267;NuA4 histone acetyltransferase complex;0.0278108416038125!GO:0007040;lysosome organization and biogenesis;0.0282772451191822!GO:0001558;regulation of cell growth;0.0283472663207592!GO:0000775;chromosome, pericentric region;0.028630325958663!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.028630325958663!GO:0005862;muscle thin filament tropomyosin;0.0293028284217166!GO:0030384;phosphoinositide metabolic process;0.0296006932764935!GO:0000123;histone acetyltransferase complex;0.0304681187297981!GO:0006289;nucleotide-excision repair;0.0304867393382153!GO:0004680;casein kinase activity;0.0305878203511051!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0308559070070641!GO:0007346;regulation of progression through mitotic cell cycle;0.0309783492148779!GO:0033559;unsaturated fatty acid metabolic process;0.0309964490097083!GO:0006636;unsaturated fatty acid biosynthetic process;0.0309964490097083!GO:0030032;lamellipodium biogenesis;0.0309964490097083!GO:0045792;negative regulation of cell size;0.0309964490097083!GO:0006497;protein amino acid lipidation;0.0310857155347849!GO:0045045;secretory pathway;0.0310928331561375!GO:0006505;GPI anchor metabolic process;0.0311179733086331!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0311179733086331!GO:0010257;NADH dehydrogenase complex assembly;0.0311179733086331!GO:0033108;mitochondrial respiratory chain complex assembly;0.0311179733086331!GO:0030308;negative regulation of cell growth;0.0314078394489531!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.031436393807587!GO:0051272;positive regulation of cell motility;0.0317157266368456!GO:0040017;positive regulation of locomotion;0.0317157266368456!GO:0030521;androgen receptor signaling pathway;0.0323268750101787!GO:0019318;hexose metabolic process;0.0323268750101787!GO:0016272;prefoldin complex;0.0323656727516328!GO:0004003;ATP-dependent DNA helicase activity;0.0327209398825286!GO:0030041;actin filament polymerization;0.0327691590324704!GO:0006807;nitrogen compound metabolic process;0.0332451171743657!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0332711393325293!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0335223343163052!GO:0015002;heme-copper terminal oxidase activity;0.0335223343163052!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0335223343163052!GO:0004129;cytochrome-c oxidase activity;0.0335223343163052!GO:0006352;transcription initiation;0.0345939737621103!GO:0001836;release of cytochrome c from mitochondria;0.0347933643042114!GO:0003756;protein disulfide isomerase activity;0.0349351745852799!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0349351745852799!GO:0005758;mitochondrial intermembrane space;0.0349375400175107!GO:0043154;negative regulation of caspase activity;0.0352368052070666!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0353559427734406!GO:0008629;induction of apoptosis by intracellular signals;0.0357000125062805!GO:0051059;NF-kappaB binding;0.0357526489187793!GO:0005996;monosaccharide metabolic process;0.0358371634952072!GO:0008426;protein kinase C inhibitor activity;0.0361164497754077!GO:0045936;negative regulation of phosphate metabolic process;0.0370375898354117!GO:0051338;regulation of transferase activity;0.0373277508365454!GO:0043022;ribosome binding;0.0373943938069909!GO:0032507;maintenance of cellular protein localization;0.0375975966448961!GO:0006644;phospholipid metabolic process;0.0381102891858742!GO:0022890;inorganic cation transmembrane transporter activity;0.0385142579610226!GO:0009119;ribonucleoside metabolic process;0.0385168447593969!GO:0031124;mRNA 3'-end processing;0.038716176359644!GO:0007242;intracellular signaling cascade;0.0387734550071795!GO:0046365;monosaccharide catabolic process;0.0390192805604574!GO:0051128;regulation of cellular component organization and biogenesis;0.0390765281522065!GO:0030149;sphingolipid catabolic process;0.0394710552359871!GO:0005092;GDP-dissociation inhibitor activity;0.0398899171390728!GO:0050750;low-density lipoprotein receptor binding;0.0400104358611179!GO:0000086;G2/M transition of mitotic cell cycle;0.0407396521746584!GO:0045926;negative regulation of growth;0.0407396521746584!GO:0006767;water-soluble vitamin metabolic process;0.0412367542271855!GO:0009451;RNA modification;0.0413366105702391!GO:0008203;cholesterol metabolic process;0.0415353067967787!GO:0012506;vesicle membrane;0.0418669370986311!GO:0040029;regulation of gene expression, epigenetic;0.0422561914138135!GO:0000096;sulfur amino acid metabolic process;0.0423977735684466!GO:0004722;protein serine/threonine phosphatase activity;0.0425365850731493!GO:0042158;lipoprotein biosynthetic process;0.0426361040044714!GO:0019206;nucleoside kinase activity;0.0427355316074457!GO:0045892;negative regulation of transcription, DNA-dependent;0.0427355316074457!GO:0031300;intrinsic to organelle membrane;0.0427355316074457!GO:0016408;C-acyltransferase activity;0.0428123748112389!GO:0051716;cellular response to stimulus;0.0443228708502193!GO:0007021;tubulin folding;0.0451227627214864!GO:0008180;signalosome;0.0451535070753004!GO:0030911;TPR domain binding;0.0453366856456084!GO:0008017;microtubule binding;0.0456991800796989!GO:0007050;cell cycle arrest;0.0456991800796989!GO:0048500;signal recognition particle;0.0458592320596289!GO:0007033;vacuole organization and biogenesis;0.0462159513908236!GO:0017049;GTP-Rho binding;0.0463649468312662!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0472985146847962!GO:0012510;trans-Golgi network transport vesicle membrane;0.0472985146847962!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0479542814209942!GO:0016584;nucleosome positioning;0.0480644111396058!GO:0016569;covalent chromatin modification;0.0481044955689356!GO:0051085;chaperone cofactor-dependent protein folding;0.0482647101727783!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0484465420823124!GO:0000339;RNA cap binding;0.0489177027763791!GO:0000030;mannosyltransferase activity;0.0493435050620022 | |||
|sample_id=11457 | |sample_id=11457 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=PPARG:2.67196064012;TP53:2.6393254282;NR5A1,2:2.18845549101;ZNF148:1.7789837571;POU2F1..3:1.71181950856;TBX4,5:1.69420065703;XCPE1{core}:1.65180640338;ZEB1:1.47193908448;SNAI1..3:1.41198910436;GTF2A1,2:1.28242717038;TFCP2:1.2393930296;PAX1,9:1.20250703364;SP1:1.17632873095;VSX1,2:1.17439242146;ZNF423:1.13204188815;TFAP2{A,C}:0.981824905249;MYOD1:0.981554929511;TBP:0.96129500774;ONECUT1,2:0.941495346342;HAND1,2:0.871854382291;TEAD1:0.846927408045;POU1F1:0.838805522766;LMO2:0.781310209136;IKZF1:0.756212835327;ADNP_IRX_SIX_ZHX:0.741799526913;FOS_FOS{B,L1}_JUN{B,D}:0.692593165918;EBF1:0.688254668523;BACH2:0.662137344054;bHLH_family:0.653617145757;ZNF238:0.590987156459;HMX1:0.580050046783;NKX2-3_NKX2-5:0.577349333882;NANOG:0.568292324396;MTF1:0.557451333986;RXR{A,B,G}:0.528903541613;REST:0.524731871931;GLI1..3:0.501117201168;ZBTB6:0.476249785619;TLX1..3_NFIC{dimer}:0.475587307286;HIF1A:0.461723277726;ESR1:0.390443849667;TFAP4:0.385189570838;ARID5B:0.364152968036;ZIC1..3:0.361867538083;LEF1_TCF7_TCF7L1,2:0.355807235788;ELK1,4_GABP{A,B1}:0.354150014173;PBX1:0.343100258505;SOX{8,9,10}:0.323200907985;FOXM1:0.320145988555;FOSL2:0.301274041559;PAX2:0.256696904142;NFY{A,B,C}:0.254068536936;TFDP1:0.239053496968;NFIL3:0.230424570041;AR:0.224998382343;TFAP2B:0.211152896549;STAT5{A,B}:0.209566846959;SPZ1:0.203549533332;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.187760359621;CEBPA,B_DDIT3:0.165997609946;HOX{A5,B5}:0.155280079694;NR1H4:0.151554161689;HNF4A_NR2F1,2:0.147388279036;RXRA_VDR{dimer}:0.118269095337;POU6F1:0.115163174056;ZNF143:0.102528362115;HES1:0.0970407737464;RBPJ:0.0890149697658;GFI1B:0.0704605135882;HLF:0.0602426888292;NFE2:0.0447062823131;SMAD1..7,9:0.0376231681942;EP300:0.036414688612;OCT4_SOX2{dimer}:0.0327540275958;TOPORS:-0.00531288926594;NFKB1_REL_RELA:-0.0127790687511;HIC1:-0.0149979303796;E2F1..5:-0.0199595672476;LHX3,4:-0.0208444286414;SOX17:-0.0276864691868;MAZ:-0.0346886072112;GZF1:-0.054969374746;GATA6:-0.0569648460228;NKX3-2:-0.0721564239478;ETS1,2:-0.0930999785028;RREB1:-0.129968318898;GCM1,2:-0.15029972968;PAX8:-0.155363397166;UFEwm:-0.169877384549;FOXL1:-0.183214778532;POU3F1..4:-0.196858196515;CRX:-0.198229617701;HNF1A:-0.213851053911;NKX2-2,8:-0.215570869134;FOXQ1:-0.216582502564;GFI1:-0.227054845397;KLF4:-0.228855339244;FOX{F1,F2,J1}:-0.228930769421;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.230219436149;NANOG{mouse}:-0.244588580721;PAX5:-0.272211985738;SOX2:-0.27729490983;TLX2:-0.286879093631;TEF:-0.291908530451;PITX1..3:-0.292016293156;CDC5L:-0.303085814786;GTF2I:-0.311940861405;JUN:-0.324085919848;ESRRA:-0.331009767915;MED-1{core}:-0.350568054529;ELF1,2,4:-0.372996933094;NFE2L2:-0.388077584125;STAT2,4,6:-0.419770327167;NRF1:-0.425158117815;NR3C1:-0.436272387275;SPIB:-0.441670592188;RUNX1..3:-0.477146196985;NFE2L1:-0.482333281646;HOX{A4,D4}:-0.492012311824;YY1:-0.507233020662;SPI1:-0.525789614821;MYB:-0.553076004283;ATF5_CREB3:-0.571138792614;CUX2:-0.571764194125;POU5F1:-0.576693900351;MAFB:-0.584133010078;EGR1..3:-0.58829298065;RFX1:-0.595282811788;MEF2{A,B,C,D}:-0.607305714621;SRF:-0.623794709386;ZFP161:-0.63498421338;ATF4:-0.638857577378;NHLH1,2:-0.670803752712;PDX1:-0.687497915075;RORA:-0.690197580049;ATF2:-0.707647851193;NR6A1:-0.735012870495;CREB1:-0.736128426723;T:-0.776594315222;RFX2..5_RFXANK_RFXAP:-0.793129706337;IRF7:-0.796698401046;FOXN1:-0.806510095282;PAX3,7:-0.80904413699;PATZ1:-0.809159797652;HOX{A6,A7,B6,B7}:-0.812864920492;MTE{core}:-0.82714765527;FOX{I1,J2}:-0.846077379848;HSF1,2:-0.866710684352;EN1,2:-0.922309939214;MYBL2:-0.934667579737;PRRX1,2:-0.94946829698;BREu{core}:-0.954159028616;NKX2-1,4:-0.977937298575;NFATC1..3:-0.982284470455;PAX6:-0.998379102349;NFIX:-1.00195226809;MYFfamily:-1.04973147723;MZF1:-1.05284581675;PAX4:-1.06474286903;FOXA2:-1.07452071528;DBP:-1.12512388935;AHR_ARNT_ARNT2:-1.12826775435;STAT1,3:-1.14930402662;TGIF1:-1.20761835285;EVI1:-1.21513459618;PRDM1:-1.269678282;ALX4:-1.27924736501;SOX5:-1.28725382363;DMAP1_NCOR{1,2}_SMARC:-1.31328250592;IRF1,2:-1.34072639173;ATF6:-1.34977663204;FOXP1:-1.36334504984;ALX1:-1.37267665799;XBP1:-1.38541254269;TAL1_TCF{3,4,12}:-1.42915169954;AIRE:-1.44217826497;FOXP3:-1.44990619598;NKX3-1:-1.48111483823;FOX{D1,D2}:-1.51157600396;CDX1,2,4:-1.52493522385;SREBF1,2:-1.53392105142;HMGA1,2:-1.55891433421;HOXA9_MEIS1:-1.55987707542;GATA4:-1.56277343414;HBP1_HMGB_SSRP1_UBTF:-1.5628234848;ZNF384:-1.59462421141;FOXO1,3,4:-1.6127076191;ZBTB16:-1.72218869324;NKX6-1,2:-1.83000823459;FOXD3:-1.86558330571;IKZF2:-2.048085943;BPTF:-2.12821629863 | |top_motifs=PPARG:2.67196064012;TP53:2.6393254282;NR5A1,2:2.18845549101;ZNF148:1.7789837571;POU2F1..3:1.71181950856;TBX4,5:1.69420065703;XCPE1{core}:1.65180640338;ZEB1:1.47193908448;SNAI1..3:1.41198910436;GTF2A1,2:1.28242717038;TFCP2:1.2393930296;PAX1,9:1.20250703364;SP1:1.17632873095;VSX1,2:1.17439242146;ZNF423:1.13204188815;TFAP2{A,C}:0.981824905249;MYOD1:0.981554929511;TBP:0.96129500774;ONECUT1,2:0.941495346342;HAND1,2:0.871854382291;TEAD1:0.846927408045;POU1F1:0.838805522766;LMO2:0.781310209136;IKZF1:0.756212835327;ADNP_IRX_SIX_ZHX:0.741799526913;FOS_FOS{B,L1}_JUN{B,D}:0.692593165918;EBF1:0.688254668523;BACH2:0.662137344054;bHLH_family:0.653617145757;ZNF238:0.590987156459;HMX1:0.580050046783;NKX2-3_NKX2-5:0.577349333882;NANOG:0.568292324396;MTF1:0.557451333986;RXR{A,B,G}:0.528903541613;REST:0.524731871931;GLI1..3:0.501117201168;ZBTB6:0.476249785619;TLX1..3_NFIC{dimer}:0.475587307286;HIF1A:0.461723277726;ESR1:0.390443849667;TFAP4:0.385189570838;ARID5B:0.364152968036;ZIC1..3:0.361867538083;LEF1_TCF7_TCF7L1,2:0.355807235788;ELK1,4_GABP{A,B1}:0.354150014173;PBX1:0.343100258505;SOX{8,9,10}:0.323200907985;FOXM1:0.320145988555;FOSL2:0.301274041559;PAX2:0.256696904142;NFY{A,B,C}:0.254068536936;TFDP1:0.239053496968;NFIL3:0.230424570041;AR:0.224998382343;TFAP2B:0.211152896549;STAT5{A,B}:0.209566846959;SPZ1:0.203549533332;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.187760359621;CEBPA,B_DDIT3:0.165997609946;HOX{A5,B5}:0.155280079694;NR1H4:0.151554161689;HNF4A_NR2F1,2:0.147388279036;RXRA_VDR{dimer}:0.118269095337;POU6F1:0.115163174056;ZNF143:0.102528362115;HES1:0.0970407737464;RBPJ:0.0890149697658;GFI1B:0.0704605135882;HLF:0.0602426888292;NFE2:0.0447062823131;SMAD1..7,9:0.0376231681942;EP300:0.036414688612;OCT4_SOX2{dimer}:0.0327540275958;TOPORS:-0.00531288926594;NFKB1_REL_RELA:-0.0127790687511;HIC1:-0.0149979303796;E2F1..5:-0.0199595672476;LHX3,4:-0.0208444286414;SOX17:-0.0276864691868;MAZ:-0.0346886072112;GZF1:-0.054969374746;GATA6:-0.0569648460228;NKX3-2:-0.0721564239478;ETS1,2:-0.0930999785028;RREB1:-0.129968318898;GCM1,2:-0.15029972968;PAX8:-0.155363397166;UFEwm:-0.169877384549;FOXL1:-0.183214778532;POU3F1..4:-0.196858196515;CRX:-0.198229617701;HNF1A:-0.213851053911;NKX2-2,8:-0.215570869134;FOXQ1:-0.216582502564;GFI1:-0.227054845397;KLF4:-0.228855339244;FOX{F1,F2,J1}:-0.228930769421;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.230219436149;NANOG{mouse}:-0.244588580721;PAX5:-0.272211985738;SOX2:-0.27729490983;TLX2:-0.286879093631;TEF:-0.291908530451;PITX1..3:-0.292016293156;CDC5L:-0.303085814786;GTF2I:-0.311940861405;JUN:-0.324085919848;ESRRA:-0.331009767915;MED-1{core}:-0.350568054529;ELF1,2,4:-0.372996933094;NFE2L2:-0.388077584125;STAT2,4,6:-0.419770327167;NRF1:-0.425158117815;NR3C1:-0.436272387275;SPIB:-0.441670592188;RUNX1..3:-0.477146196985;NFE2L1:-0.482333281646;HOX{A4,D4}:-0.492012311824;YY1:-0.507233020662;SPI1:-0.525789614821;MYB:-0.553076004283;ATF5_CREB3:-0.571138792614;CUX2:-0.571764194125;POU5F1:-0.576693900351;MAFB:-0.584133010078;EGR1..3:-0.58829298065;RFX1:-0.595282811788;MEF2{A,B,C,D}:-0.607305714621;SRF:-0.623794709386;ZFP161:-0.63498421338;ATF4:-0.638857577378;NHLH1,2:-0.670803752712;PDX1:-0.687497915075;RORA:-0.690197580049;ATF2:-0.707647851193;NR6A1:-0.735012870495;CREB1:-0.736128426723;T:-0.776594315222;RFX2..5_RFXANK_RFXAP:-0.793129706337;IRF7:-0.796698401046;FOXN1:-0.806510095282;PAX3,7:-0.80904413699;PATZ1:-0.809159797652;HOX{A6,A7,B6,B7}:-0.812864920492;MTE{core}:-0.82714765527;FOX{I1,J2}:-0.846077379848;HSF1,2:-0.866710684352;EN1,2:-0.922309939214;MYBL2:-0.934667579737;PRRX1,2:-0.94946829698;BREu{core}:-0.954159028616;NKX2-1,4:-0.977937298575;NFATC1..3:-0.982284470455;PAX6:-0.998379102349;NFIX:-1.00195226809;MYFfamily:-1.04973147723;MZF1:-1.05284581675;PAX4:-1.06474286903;FOXA2:-1.07452071528;DBP:-1.12512388935;AHR_ARNT_ARNT2:-1.12826775435;STAT1,3:-1.14930402662;TGIF1:-1.20761835285;EVI1:-1.21513459618;PRDM1:-1.269678282;ALX4:-1.27924736501;SOX5:-1.28725382363;DMAP1_NCOR{1,2}_SMARC:-1.31328250592;IRF1,2:-1.34072639173;ATF6:-1.34977663204;FOXP1:-1.36334504984;ALX1:-1.37267665799;XBP1:-1.38541254269;TAL1_TCF{3,4,12}:-1.42915169954;AIRE:-1.44217826497;FOXP3:-1.44990619598;NKX3-1:-1.48111483823;FOX{D1,D2}:-1.51157600396;CDX1,2,4:-1.52493522385;SREBF1,2:-1.53392105142;HMGA1,2:-1.55891433421;HOXA9_MEIS1:-1.55987707542;GATA4:-1.56277343414;HBP1_HMGB_SSRP1_UBTF:-1.5628234848;ZNF384:-1.59462421141;FOXO1,3,4:-1.6127076191;ZBTB16:-1.72218869324;NKX6-1,2:-1.83000823459;FOXD3:-1.86558330571;IKZF2:-2.048085943;BPTF:-2.12821629863 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11457-119A8;search_select_hide=table117:FF:11457-119A8 | |||
}} | }} | ||
Latest revision as of 18:02, 4 June 2020
| Name: | Bronchial Epithelial Cell, donor5 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12058 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12058
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12058
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.909 |
| 10 | 10 | 0.398 |
| 100 | 100 | 0.294 |
| 101 | 101 | 0.0013 |
| 102 | 102 | 0.305 |
| 103 | 103 | 0.379 |
| 104 | 104 | 0.276 |
| 105 | 105 | 0.0765 |
| 106 | 106 | 0.0733 |
| 107 | 107 | 0.0812 |
| 108 | 108 | 0.588 |
| 109 | 109 | 0.0012 |
| 11 | 11 | 0.109 |
| 110 | 110 | 0.128 |
| 111 | 111 | 0.586 |
| 112 | 112 | 0.77 |
| 113 | 113 | 0.292 |
| 114 | 114 | 0.841 |
| 115 | 115 | 0.214 |
| 116 | 116 | 0.507 |
| 117 | 117 | 0.491 |
| 118 | 118 | 0.858 |
| 119 | 119 | 0.299 |
| 12 | 12 | 0.223 |
| 120 | 120 | 0.207 |
| 121 | 121 | 0.293 |
| 122 | 122 | 0.0231 |
| 123 | 123 | 0.166 |
| 124 | 124 | 0.155 |
| 125 | 125 | 0.381 |
| 126 | 126 | 0.741 |
| 127 | 127 | 0.229 |
| 128 | 128 | 0.53 |
| 129 | 129 | 0.135 |
| 13 | 13 | 0.0509 |
| 130 | 130 | 0.204 |
| 131 | 131 | 0.418 |
| 132 | 132 | 0.278 |
| 133 | 133 | 0.00161 |
| 134 | 134 | 0.362 |
| 135 | 135 | 0.987 |
| 136 | 136 | 0.0722 |
| 137 | 137 | 0.0506 |
| 138 | 138 | 0.737 |
| 139 | 139 | 0.815 |
| 14 | 14 | 0.827 |
| 140 | 140 | 0.865 |
| 141 | 141 | 0.948 |
| 142 | 142 | 0.0376 |
| 143 | 143 | 0.919 |
| 144 | 144 | 0.155 |
| 145 | 145 | 0.388 |
| 146 | 146 | 0.011 |
| 147 | 147 | 0.126 |
| 148 | 148 | 0.125 |
| 149 | 149 | 0.814 |
| 15 | 15 | 0.713 |
| 150 | 150 | 0.249 |
| 151 | 151 | 0.495 |
| 152 | 152 | 0.0336 |
| 153 | 153 | 0.475 |
| 154 | 154 | 0.446 |
| 155 | 155 | 0.449 |
| 156 | 156 | 0.433 |
| 157 | 157 | 0.798 |
| 158 | 158 | 0.189 |
| 159 | 159 | 0.929 |
| 16 | 16 | 0.28 |
| 160 | 160 | 0.137 |
| 161 | 161 | 0.149 |
| 162 | 162 | 0.13 |
| 163 | 163 | 0.864 |
| 164 | 164 | 0.959 |
| 165 | 165 | 0.375 |
| 166 | 166 | 0.409 |
| 167 | 167 | 0.0781 |
| 168 | 168 | 0.997 |
| 169 | 169 | 0.0762 |
| 17 | 17 | 0.16 |
| 18 | 18 | 0.64 |
| 19 | 19 | 0.655 |
| 2 | 2 | 0.109 |
| 20 | 20 | 0.971 |
| 21 | 21 | 0.837 |
| 22 | 22 | 0.102 |
| 23 | 23 | 0.591 |
| 24 | 24 | 0.275 |
| 25 | 25 | 0.729 |
| 26 | 26 | 0.0714 |
| 27 | 27 | 0.317 |
| 28 | 28 | 0.858 |
| 29 | 29 | 0.62 |
| 3 | 3 | 0.856 |
| 30 | 30 | 0.0352 |
| 31 | 31 | 0.685 |
| 32 | 32 | 0.479 |
| 33 | 33 | 0.16 |
| 34 | 34 | 0.514 |
| 35 | 35 | 0.207 |
| 36 | 36 | 0.704 |
| 37 | 37 | 0.345 |
| 38 | 38 | 0.296 |
| 39 | 39 | 0.382 |
| 4 | 4 | 0.274 |
| 40 | 40 | 0.00233 |
| 41 | 41 | 0.876 |
| 42 | 42 | 0.992 |
| 43 | 43 | 0.919 |
| 44 | 44 | 0.786 |
| 45 | 45 | 0.124 |
| 46 | 46 | 0.6 |
| 47 | 47 | 0.45 |
| 48 | 48 | 0.0882 |
| 49 | 49 | 0.604 |
| 5 | 5 | 0.302 |
| 50 | 50 | 0.416 |
| 51 | 51 | 0.947 |
| 52 | 52 | 0.348 |
| 53 | 53 | 0.493 |
| 54 | 54 | 0.777 |
| 55 | 55 | 0.444 |
| 56 | 56 | 0.489 |
| 57 | 57 | 0.728 |
| 58 | 58 | 0.724 |
| 59 | 59 | 0.0613 |
| 6 | 6 | 0.307 |
| 60 | 60 | 0.299 |
| 61 | 61 | 0.677 |
| 62 | 62 | 0.546 |
| 63 | 63 | 0.271 |
| 64 | 64 | 0.302 |
| 65 | 65 | 0.274 |
| 66 | 66 | 0.25 |
| 67 | 67 | 0.218 |
| 68 | 68 | 0.579 |
| 69 | 69 | 0.202 |
| 7 | 7 | 0.452 |
| 70 | 70 | 0.146 |
| 71 | 71 | 0.533 |
| 72 | 72 | 0.61 |
| 73 | 73 | 0.0107 |
| 74 | 74 | 0.0343 |
| 75 | 75 | 0.467 |
| 76 | 76 | 0.456 |
| 77 | 77 | 0.00781 |
| 78 | 78 | 0.18 |
| 79 | 79 | 0.641 |
| 8 | 8 | 0.305 |
| 80 | 80 | 0.638 |
| 81 | 81 | 0.161 |
| 82 | 82 | 0.798 |
| 83 | 83 | 0.823 |
| 84 | 84 | 0.806 |
| 85 | 85 | 0.624 |
| 86 | 86 | 0.919 |
| 87 | 87 | 0.00864 |
| 88 | 88 | 0.613 |
| 89 | 89 | 0.197 |
| 9 | 9 | 0.666 |
| 90 | 90 | 0.00278 |
| 91 | 91 | 0.895 |
| 92 | 92 | 0.576 |
| 93 | 93 | 0.787 |
| 94 | 94 | 0.504 |
| 95 | 95 | 0.0174 |
| 96 | 96 | 0.545 |
| 97 | 97 | 0.799 |
| 98 | 98 | 0.362 |
| 99 | 99 | 0.0178 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12058
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0002328 (bronchial epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000485 (simple columnar epithelium)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0004815 (lower respiratory tract epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0002031 (epithelium of bronchus)
0002185 (bronchus)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000015 (human bronchial epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
