FF:11340-117F8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004981 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004981 | ||
|accession_numbers=CAGE;DRX008218;DRR009090;DRZ000515;DRZ001900;DRZ011865;DRZ013250 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037028;DRR041394;DRZ007036 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0004573,UBERON:0000487,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001917,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413,CL:0002544 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000047,FF:0000048,FF:0000001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor2.CNhs11375.11340-117F8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor2.CNhs11375.11340-117F8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor2.CNhs11375.11340-117F8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor2.CNhs11375.11340-117F8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Aortic%252c%2520donor2.CNhs11375.11340-117F8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11340-117F8 | |id=FF:11340-117F8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000048 | ||
|is_obsolete= | |||
|library_id=CNhs11375 | |||
|library_id_phase_based=2:CNhs11375 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11340 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.GTGGCC.11340 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11340 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.GTGGCC.11340 | |||
|name=Endothelial Cells - Aortic, donor2 | |name=Endothelial Cells - Aortic, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11375,LSID771,release012,COMPLETED | |profile_hcage=CNhs11375,LSID771,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA304-R10a | |rna_catalog_number=CA304-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117F8 | |rna_tube_id=117F8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10003.GTGGCC | |||
|sample_age=56 | |sample_age=56 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.69340873784524e-225!GO:0005737;cytoplasm;1.2750386419868e-186!GO:0043226;organelle;1.41933933405325e-177!GO:0043229;intracellular organelle;4.38785753620956e-177!GO:0043231;intracellular membrane-bound organelle;7.74865427252929e-171!GO:0043227;membrane-bound organelle;1.51112733104298e-170!GO:0044422;organelle part;2.69959347873344e-135!GO:0044444;cytoplasmic part;2.70254012487918e-134!GO:0044446;intracellular organelle part;6.20354447405094e-134!GO:0032991;macromolecular complex;2.06074951479222e-89!GO:0005515;protein binding;2.1103912300502e-83!GO:0044238;primary metabolic process;1.71066106412486e-81!GO:0044237;cellular metabolic process;1.13785578628301e-80!GO:0030529;ribonucleoprotein complex;3.1546186424992e-78!GO:0043170;macromolecule metabolic process;1.91511380037332e-73!GO:0043233;organelle lumen;1.11973571532535e-66!GO:0031974;membrane-enclosed lumen;1.11973571532535e-66!GO:0005739;mitochondrion;2.46693694986674e-65!GO:0044428;nuclear part;1.44639711483568e-62!GO:0005634;nucleus;2.55685784799626e-62!GO:0003723;RNA binding;1.09835331091827e-60!GO:0019538;protein metabolic process;3.10895706944965e-54!GO:0031090;organelle membrane;1.11770398000748e-51!GO:0005840;ribosome;6.69681684347615e-49!GO:0044260;cellular macromolecule metabolic process;7.40212863850059e-48!GO:0044267;cellular protein metabolic process;1.34483866342213e-47!GO:0006412;translation;4.02184144937675e-47!GO:0043234;protein complex;8.63722692506821e-45!GO:0016043;cellular component organization and biogenesis;1.21568037208291e-44!GO:0044429;mitochondrial part;2.13940763379608e-44!GO:0003735;structural constituent of ribosome;1.57326005206878e-43!GO:0009058;biosynthetic process;3.3410874509341e-40!GO:0031967;organelle envelope;3.7951154088349e-40!GO:0006396;RNA processing;4.11140712935378e-40!GO:0031975;envelope;8.61233302509043e-40!GO:0031981;nuclear lumen;1.48761013722559e-39!GO:0005829;cytosol;2.11575748085936e-39!GO:0044249;cellular biosynthetic process;1.3140902536164e-38!GO:0043283;biopolymer metabolic process;2.20990816116766e-38!GO:0015031;protein transport;9.95114439654338e-38!GO:0033279;ribosomal subunit;2.32470045158502e-37!GO:0009059;macromolecule biosynthetic process;5.16038363340437e-37!GO:0033036;macromolecule localization;7.74374206761615e-37!GO:0045184;establishment of protein localization;8.85717416363694e-35!GO:0008104;protein localization;3.56211035901982e-34!GO:0043228;non-membrane-bound organelle;9.26106642872899e-34!GO:0043232;intracellular non-membrane-bound organelle;9.26106642872899e-34!GO:0046907;intracellular transport;5.6312133671628e-32!GO:0010467;gene expression;6.42247919849865e-32!GO:0016071;mRNA metabolic process;5.58155677363245e-31!GO:0006996;organelle organization and biogenesis;8.66673941453846e-31!GO:0005740;mitochondrial envelope;5.02433257581369e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.90010405991865e-30!GO:0065003;macromolecular complex assembly;1.19158090634882e-29!GO:0008380;RNA splicing;1.67868576699113e-29!GO:0031966;mitochondrial membrane;4.69201375496705e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.80962561377235e-28!GO:0006397;mRNA processing;1.42332095224955e-27!GO:0006886;intracellular protein transport;6.08958642278824e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.44919744189571e-26!GO:0022607;cellular component assembly;2.84445977497177e-26!GO:0019866;organelle inner membrane;1.23122504558143e-25!GO:0000166;nucleotide binding;6.63959481990048e-24!GO:0005743;mitochondrial inner membrane;9.09761461034679e-24!GO:0005654;nucleoplasm;2.29331313277478e-23!GO:0044445;cytosolic part;8.24550052685679e-23!GO:0006259;DNA metabolic process;9.5247352579387e-23!GO:0005681;spliceosome;4.17695540500997e-22!GO:0012505;endomembrane system;1.5589254299206e-21!GO:0051649;establishment of cellular localization;3.04179256538273e-21!GO:0051641;cellular localization;6.40868356767965e-21!GO:0006119;oxidative phosphorylation;4.04958113884878e-20!GO:0016462;pyrophosphatase activity;4.10631639451475e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.35346684043614e-20!GO:0015934;large ribosomal subunit;4.66734456662971e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;5.57594464311463e-20!GO:0007049;cell cycle;6.91013226576875e-20!GO:0017111;nucleoside-triphosphatase activity;1.14567551466553e-19!GO:0044451;nucleoplasm part;5.01874328473637e-19!GO:0005783;endoplasmic reticulum;9.18004776027139e-19!GO:0044455;mitochondrial membrane part;9.53624734152777e-19!GO:0015935;small ribosomal subunit;2.66089753742874e-18!GO:0005730;nucleolus;3.54832866697444e-18!GO:0031980;mitochondrial lumen;3.69982942810479e-18!GO:0005759;mitochondrial matrix;3.69982942810479e-18!GO:0006457;protein folding;5.4527505671515e-18!GO:0016874;ligase activity;1.62422948133641e-17!GO:0017076;purine nucleotide binding;2.23518942896159e-17!GO:0005794;Golgi apparatus;2.38924917737592e-17!GO:0032553;ribonucleotide binding;2.59296995354314e-17!GO:0032555;purine ribonucleotide binding;2.59296995354314e-17!GO:0008134;transcription factor binding;5.6924883427081e-17!GO:0043412;biopolymer modification;2.06517450403926e-16!GO:0048770;pigment granule;5.8636025466114e-16!GO:0042470;melanosome;5.8636025466114e-16!GO:0022618;protein-RNA complex assembly;5.95701333625761e-16!GO:0044432;endoplasmic reticulum part;6.55766819211159e-16!GO:0006512;ubiquitin cycle;8.99986726290246e-16!GO:0022402;cell cycle process;1.38772403941859e-15!GO:0044265;cellular macromolecule catabolic process;1.66104337768482e-15!GO:0005746;mitochondrial respiratory chain;3.27789071704181e-15!GO:0006605;protein targeting;4.38282268579488e-15!GO:0006464;protein modification process;4.57647137379432e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.1305581857712e-14!GO:0043285;biopolymer catabolic process;1.27053582632155e-14!GO:0009057;macromolecule catabolic process;2.28499319480087e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.49545895721708e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.63273466379489e-14!GO:0051186;cofactor metabolic process;4.1412528278808e-14!GO:0032559;adenyl ribonucleotide binding;4.33481320596062e-14!GO:0005524;ATP binding;4.70375073802343e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;5.11035350828025e-14!GO:0030554;adenyl nucleotide binding;5.19218784232963e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.57865927018716e-14!GO:0016192;vesicle-mediated transport;7.48418185646603e-14!GO:0000278;mitotic cell cycle;7.89437380409463e-14!GO:0019941;modification-dependent protein catabolic process;7.89437380409463e-14!GO:0043632;modification-dependent macromolecule catabolic process;7.89437380409463e-14!GO:0003676;nucleic acid binding;8.65892007497596e-14!GO:0044257;cellular protein catabolic process;9.98944800372388e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.05536055483149e-13!GO:0003954;NADH dehydrogenase activity;1.05536055483149e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.05536055483149e-13!GO:0006511;ubiquitin-dependent protein catabolic process;1.19868112021359e-13!GO:0008135;translation factor activity, nucleic acid binding;2.10426120616259e-13!GO:0005761;mitochondrial ribosome;2.30382415451908e-13!GO:0000313;organellar ribosome;2.30382415451908e-13!GO:0051082;unfolded protein binding;5.28020513283005e-13!GO:0030163;protein catabolic process;5.62422123582061e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;5.75421604247249e-13!GO:0000375;RNA splicing, via transesterification reactions;5.75421604247249e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.75421604247249e-13!GO:0043687;post-translational protein modification;7.71743597635649e-13!GO:0048193;Golgi vesicle transport;8.09836095161078e-13!GO:0044248;cellular catabolic process;8.21855367996468e-13!GO:0012501;programmed cell death;1.3641363337844e-12!GO:0006915;apoptosis;1.70605350698303e-12!GO:0042775;organelle ATP synthesis coupled electron transport;4.33645525654167e-12!GO:0042773;ATP synthesis coupled electron transport;4.33645525654167e-12!GO:0030964;NADH dehydrogenase complex (quinone);4.63418781315211e-12!GO:0045271;respiratory chain complex I;4.63418781315211e-12!GO:0005747;mitochondrial respiratory chain complex I;4.63418781315211e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.82227090783983e-12!GO:0003712;transcription cofactor activity;7.76749197383064e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.20966786882272e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.73038759859711e-11!GO:0005635;nuclear envelope;3.07010123180315e-11!GO:0008219;cell death;3.2154031993562e-11!GO:0016265;death;3.2154031993562e-11!GO:0005789;endoplasmic reticulum membrane;3.85597204542851e-11!GO:0016070;RNA metabolic process;3.95530528860408e-11!GO:0006974;response to DNA damage stimulus;4.11951212532888e-11!GO:0042254;ribosome biogenesis and assembly;6.33708091726244e-11!GO:0051726;regulation of cell cycle;8.90607943801914e-11!GO:0042623;ATPase activity, coupled;9.72303965654974e-11!GO:0031965;nuclear membrane;1.71415752173239e-10!GO:0006732;coenzyme metabolic process;1.82271239129144e-10!GO:0006913;nucleocytoplasmic transport;1.89122548259264e-10!GO:0000074;regulation of progression through cell cycle;1.96368503011165e-10!GO:0016887;ATPase activity;2.43675105116577e-10!GO:0008639;small protein conjugating enzyme activity;3.78640269216415e-10!GO:0005793;ER-Golgi intermediate compartment;4.13618142528026e-10!GO:0051169;nuclear transport;4.78607491975851e-10!GO:0051276;chromosome organization and biogenesis;4.91538122377243e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;5.7111226338789e-10!GO:0006413;translational initiation;6.33746872668171e-10!GO:0003743;translation initiation factor activity;6.67886665382743e-10!GO:0004842;ubiquitin-protein ligase activity;7.38106914568944e-10!GO:0005694;chromosome;7.47084655597501e-10!GO:0009259;ribonucleotide metabolic process;8.11473586519047e-10!GO:0044453;nuclear membrane part;8.7153892210451e-10!GO:0016604;nuclear body;1.53678917347711e-09!GO:0006446;regulation of translational initiation;1.68664372620959e-09!GO:0019787;small conjugating protein ligase activity;1.95435538297173e-09!GO:0048523;negative regulation of cellular process;2.07436504351942e-09!GO:0000087;M phase of mitotic cell cycle;2.08390404250529e-09!GO:0006163;purine nucleotide metabolic process;2.1213528304252e-09!GO:0007067;mitosis;2.14043820904825e-09!GO:0009055;electron carrier activity;2.20900971428402e-09!GO:0006260;DNA replication;2.26381239127831e-09!GO:0006323;DNA packaging;2.39437187891647e-09!GO:0006461;protein complex assembly;2.70787495716714e-09!GO:0044427;chromosomal part;2.73538106959554e-09!GO:0009150;purine ribonucleotide metabolic process;3.21787479669198e-09!GO:0022403;cell cycle phase;5.18157341277048e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.87989194237834e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.24284021138835e-09!GO:0050794;regulation of cellular process;7.05198216349262e-09!GO:0051301;cell division;9.86195048826294e-09!GO:0006281;DNA repair;1.23420579697563e-08!GO:0006793;phosphorus metabolic process;1.39606754434524e-08!GO:0006796;phosphate metabolic process;1.39606754434524e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.43865380783922e-08!GO:0009719;response to endogenous stimulus;1.50509574776113e-08!GO:0009260;ribonucleotide biosynthetic process;1.80986546428333e-08!GO:0006164;purine nucleotide biosynthetic process;2.05073536944141e-08!GO:0017038;protein import;2.16307662481757e-08!GO:0016881;acid-amino acid ligase activity;2.40868696125063e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.62026567705749e-08!GO:0006399;tRNA metabolic process;2.92271194002556e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.09572206399498e-08!GO:0009141;nucleoside triphosphate metabolic process;3.5627848942115e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.03495149970416e-08!GO:0030532;small nuclear ribonucleoprotein complex;4.73216291946173e-08!GO:0006366;transcription from RNA polymerase II promoter;4.74086906128458e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.17232787891614e-08!GO:0009144;purine nucleoside triphosphate metabolic process;5.17232787891614e-08!GO:0016740;transferase activity;5.82781835541888e-08!GO:0009056;catabolic process;5.85991012692442e-08!GO:0008565;protein transporter activity;6.26831994499602e-08!GO:0048519;negative regulation of biological process;6.91095324712573e-08!GO:0044431;Golgi apparatus part;1.08007387685532e-07!GO:0042981;regulation of apoptosis;1.08007387685532e-07!GO:0004386;helicase activity;1.09681233039078e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.10825276661846e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.10825276661846e-07!GO:0005643;nuclear pore;1.18895795836515e-07!GO:0043067;regulation of programmed cell death;1.22916883643888e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.23976669023778e-07!GO:0006364;rRNA processing;1.38700848026021e-07!GO:0008026;ATP-dependent helicase activity;1.40545071804907e-07!GO:0003924;GTPase activity;1.49083684305151e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.49085586331234e-07!GO:0015986;ATP synthesis coupled proton transport;1.55273254708853e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.55273254708853e-07!GO:0051188;cofactor biosynthetic process;1.61543871612651e-07!GO:0016310;phosphorylation;1.76115125657378e-07!GO:0000785;chromatin;1.7736416625429e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.79250165099383e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.79250165099383e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.79250165099383e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.1408856289172e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.1408856289172e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.3167728393161e-07!GO:0065002;intracellular protein transport across a membrane;2.42143954420713e-07!GO:0009117;nucleotide metabolic process;2.49986574546668e-07!GO:0065004;protein-DNA complex assembly;2.68240693574665e-07!GO:0009060;aerobic respiration;2.70708304723746e-07!GO:0051246;regulation of protein metabolic process;2.81031703468627e-07!GO:0006333;chromatin assembly or disassembly;2.83610820201007e-07!GO:0016072;rRNA metabolic process;2.93992082624493e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.04427499135341e-07!GO:0005768;endosome;3.24271026287274e-07!GO:0019829;cation-transporting ATPase activity;3.67539000416092e-07!GO:0016607;nuclear speck;3.96104272236291e-07!GO:0007005;mitochondrion organization and biogenesis;4.46319942644588e-07!GO:0046034;ATP metabolic process;4.80280380548841e-07!GO:0043038;amino acid activation;5.04387775238462e-07!GO:0006418;tRNA aminoacylation for protein translation;5.04387775238462e-07!GO:0043039;tRNA aminoacylation;5.04387775238462e-07!GO:0005788;endoplasmic reticulum lumen;5.70041294483845e-07!GO:0015630;microtubule cytoskeleton;6.29670861015448e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.39210673919958e-07!GO:0046930;pore complex;7.45054462205685e-07!GO:0032446;protein modification by small protein conjugation;1.03141216880741e-06!GO:0016567;protein ubiquitination;1.45783537494378e-06!GO:0030036;actin cytoskeleton organization and biogenesis;1.5134278584689e-06!GO:0031252;leading edge;1.61353075970623e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.63210451196257e-06!GO:0045333;cellular respiration;1.78846052485409e-06!GO:0006754;ATP biosynthetic process;1.8733482274525e-06!GO:0006753;nucleoside phosphate metabolic process;1.8733482274525e-06!GO:0031988;membrane-bound vesicle;2.11562569187349e-06!GO:0000279;M phase;2.15650513408097e-06!GO:0045786;negative regulation of progression through cell cycle;2.37271017004082e-06!GO:0000139;Golgi membrane;2.41460453396084e-06!GO:0030120;vesicle coat;2.47636681417807e-06!GO:0030662;coated vesicle membrane;2.47636681417807e-06!GO:0043069;negative regulation of programmed cell death;2.68248299657244e-06!GO:0016491;oxidoreductase activity;3.27289626064154e-06!GO:0006916;anti-apoptosis;3.38922833244948e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.46949687677489e-06!GO:0003697;single-stranded DNA binding;3.67192924552114e-06!GO:0016779;nucleotidyltransferase activity;3.74497567384902e-06!GO:0043066;negative regulation of apoptosis;4.34468522782956e-06!GO:0016787;hydrolase activity;4.4820187897636e-06!GO:0000245;spliceosome assembly;4.89832952791039e-06!GO:0003714;transcription corepressor activity;4.97416066796095e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.36279414409051e-06!GO:0050657;nucleic acid transport;5.73665441120896e-06!GO:0051236;establishment of RNA localization;5.73665441120896e-06!GO:0050658;RNA transport;5.73665441120896e-06!GO:0051170;nuclear import;5.89219351977268e-06!GO:0005525;GTP binding;5.99048245755241e-06!GO:0006403;RNA localization;5.99417200815363e-06!GO:0048475;coated membrane;6.86411797024892e-06!GO:0030117;membrane coat;6.86411797024892e-06!GO:0016568;chromatin modification;6.99944500561143e-06!GO:0005773;vacuole;7.43151455069699e-06!GO:0007243;protein kinase cascade;7.6583475646433e-06!GO:0003724;RNA helicase activity;7.94203006490915e-06!GO:0003713;transcription coactivator activity;8.63899627536966e-06!GO:0006099;tricarboxylic acid cycle;8.98076836571972e-06!GO:0046356;acetyl-CoA catabolic process;8.98076836571972e-06!GO:0006334;nucleosome assembly;9.18235455322282e-06!GO:0005839;proteasome core complex (sensu Eukaryota);9.69910772773173e-06!GO:0031982;vesicle;1.00675597429166e-05!GO:0009108;coenzyme biosynthetic process;1.01484869580607e-05!GO:0030029;actin filament-based process;1.02960595202441e-05!GO:0006606;protein import into nucleus;1.17515160648776e-05!GO:0050789;regulation of biological process;1.21123080779216e-05!GO:0031410;cytoplasmic vesicle;1.29059547480117e-05!GO:0045259;proton-transporting ATP synthase complex;1.32557638737085e-05!GO:0005667;transcription factor complex;1.35137472002617e-05!GO:0031497;chromatin assembly;1.38225095624155e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.48671096388584e-05!GO:0005770;late endosome;1.59521694655647e-05!GO:0065009;regulation of a molecular function;1.68450579175112e-05!GO:0044440;endosomal part;1.74846291665116e-05!GO:0010008;endosome membrane;1.74846291665116e-05!GO:0045454;cell redox homeostasis;1.89615223624444e-05!GO:0051187;cofactor catabolic process;2.10771012927266e-05!GO:0006084;acetyl-CoA metabolic process;2.13097126645439e-05!GO:0005762;mitochondrial large ribosomal subunit;2.26643971296792e-05!GO:0000315;organellar large ribosomal subunit;2.26643971296792e-05!GO:0043566;structure-specific DNA binding;2.65754199020418e-05!GO:0016564;transcription repressor activity;2.66835907947501e-05!GO:0000151;ubiquitin ligase complex;2.75747241246002e-05!GO:0007010;cytoskeleton organization and biogenesis;2.80692747273854e-05!GO:0031968;organelle outer membrane;2.84473644787679e-05!GO:0006752;group transfer coenzyme metabolic process;2.92170955496433e-05!GO:0016563;transcription activator activity;2.95378680269574e-05!GO:0048522;positive regulation of cellular process;3.14202961640411e-05!GO:0019867;outer membrane;3.29428892511399e-05!GO:0019899;enzyme binding;3.38310797843979e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.24832923057435e-05!GO:0005769;early endosome;4.66897784628641e-05!GO:0032561;guanyl ribonucleotide binding;5.48078907536689e-05!GO:0019001;guanyl nucleotide binding;5.48078907536689e-05!GO:0030867;rough endoplasmic reticulum membrane;5.7092395987902e-05!GO:0008092;cytoskeletal protein binding;5.85795607840496e-05!GO:0004298;threonine endopeptidase activity;5.93831696077303e-05!GO:0000323;lytic vacuole;5.93831696077303e-05!GO:0005764;lysosome;5.93831696077303e-05!GO:0007264;small GTPase mediated signal transduction;6.61618954858577e-05!GO:0005741;mitochondrial outer membrane;6.61618954858577e-05!GO:0005813;centrosome;6.61618954858577e-05!GO:0008047;enzyme activator activity;7.07065407265609e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.07098842630109e-05!GO:0009109;coenzyme catabolic process;7.11542185761588e-05!GO:0051325;interphase;8.05662093622965e-05!GO:0016853;isomerase activity;8.18632244400339e-05!GO:0016044;membrane organization and biogenesis;8.37374858925011e-05!GO:0006613;cotranslational protein targeting to membrane;8.39999166879255e-05!GO:0003899;DNA-directed RNA polymerase activity;8.84405773569025e-05!GO:0051329;interphase of mitotic cell cycle;8.84405773569025e-05!GO:0008654;phospholipid biosynthetic process;0.00011557667874396!GO:0051087;chaperone binding;0.000120385247541176!GO:0008186;RNA-dependent ATPase activity;0.000124575978902642!GO:0051028;mRNA transport;0.000130392244901204!GO:0043623;cellular protein complex assembly;0.000135084567031425!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000141969870939443!GO:0033116;ER-Golgi intermediate compartment membrane;0.000154676292587496!GO:0051427;hormone receptor binding;0.000174394173373411!GO:0005819;spindle;0.000186117226594779!GO:0005815;microtubule organizing center;0.000197906001958519!GO:0005798;Golgi-associated vesicle;0.000201761851625268!GO:0005905;coated pit;0.00023993896765042!GO:0009165;nucleotide biosynthetic process;0.00025391228109792!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000277170334599189!GO:0048471;perinuclear region of cytoplasm;0.00030984184208277!GO:0031324;negative regulation of cellular metabolic process;0.000315230608627894!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000316269725428452!GO:0015399;primary active transmembrane transporter activity;0.000316269725428452!GO:0035257;nuclear hormone receptor binding;0.00035673066509391!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000358746510999586!GO:0004004;ATP-dependent RNA helicase activity;0.000366506907656605!GO:0044262;cellular carbohydrate metabolic process;0.000379136571304822!GO:0005048;signal sequence binding;0.00038487601541151!GO:0008632;apoptotic program;0.000432458315840701!GO:0006091;generation of precursor metabolites and energy;0.000465419751859015!GO:0005885;Arp2/3 protein complex;0.000467231583742765!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000471569189393562!GO:0043021;ribonucleoprotein binding;0.000488579731435165!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000572649046996034!GO:0009892;negative regulation of metabolic process;0.0005732839889951!GO:0042802;identical protein binding;0.000582278169801145!GO:0005096;GTPase activator activity;0.000585011445356829!GO:0016859;cis-trans isomerase activity;0.000652483673884731!GO:0000314;organellar small ribosomal subunit;0.000656454994722572!GO:0005763;mitochondrial small ribosomal subunit;0.000656454994722572!GO:0051789;response to protein stimulus;0.000774212823578762!GO:0006986;response to unfolded protein;0.000774212823578762!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000783955387032293!GO:0006414;translational elongation;0.000789895874228103!GO:0043681;protein import into mitochondrion;0.000874849351036925!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000912467562015744!GO:0008361;regulation of cell size;0.000963278466583874!GO:0015980;energy derivation by oxidation of organic compounds;0.000996465343335126!GO:0007265;Ras protein signal transduction;0.000996465343335126!GO:0051168;nuclear export;0.00105994867710833!GO:0016049;cell growth;0.00107858747607025!GO:0007242;intracellular signaling cascade;0.00117078100912218!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00121453823407391!GO:0019843;rRNA binding;0.00126932459068602!GO:0051920;peroxiredoxin activity;0.00129233523285323!GO:0006612;protein targeting to membrane;0.00143136702289336!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00143359488463946!GO:0043492;ATPase activity, coupled to movement of substances;0.00145307312467005!GO:0065007;biological regulation;0.00146715621653586!GO:0031072;heat shock protein binding;0.00163884744077312!GO:0030880;RNA polymerase complex;0.00164119219148827!GO:0006261;DNA-dependent DNA replication;0.00173609694528143!GO:0050790;regulation of catalytic activity;0.001757890381267!GO:0001558;regulation of cell growth;0.0017785709927431!GO:0051252;regulation of RNA metabolic process;0.0017864811874769!GO:0006839;mitochondrial transport;0.00181134218982978!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00182626069728867!GO:0007006;mitochondrial membrane organization and biogenesis;0.00186166108175986!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00194659830367589!GO:0044452;nucleolar part;0.00208566655691687!GO:0007051;spindle organization and biogenesis;0.0021705806866025!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00222098437652085!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00224758414831097!GO:0006626;protein targeting to mitochondrion;0.00240002984051749!GO:0048487;beta-tubulin binding;0.00244821123407648!GO:0000059;protein import into nucleus, docking;0.00246146632405487!GO:0005791;rough endoplasmic reticulum;0.00252392961807056!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00269525231844084!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00277859429727481!GO:0030027;lamellipodium;0.00277859429727481!GO:0030133;transport vesicle;0.00282241873105304!GO:0045941;positive regulation of transcription;0.00283792976985743!GO:0005684;U2-dependent spliceosome;0.00285697584183551!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00290062231081713!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00290062231081713!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00290062231081713!GO:0030659;cytoplasmic vesicle membrane;0.00294083787577006!GO:0017166;vinculin binding;0.00328212849543355!GO:0008139;nuclear localization sequence binding;0.00331144923685378!GO:0003684;damaged DNA binding;0.00346305969906626!GO:0016363;nuclear matrix;0.00364004005811221!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0036800008994197!GO:0000786;nucleosome;0.00379969914314216!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00386595210125618!GO:0000428;DNA-directed RNA polymerase complex;0.00386595210125618!GO:0030658;transport vesicle membrane;0.00412488794359007!GO:0016126;sterol biosynthetic process;0.00413582235066129!GO:0046483;heterocycle metabolic process;0.00441602774790276!GO:0016301;kinase activity;0.00453123100219765!GO:0009967;positive regulation of signal transduction;0.00482931516402379!GO:0043488;regulation of mRNA stability;0.00482931516402379!GO:0043487;regulation of RNA stability;0.00482931516402379!GO:0030134;ER to Golgi transport vesicle;0.00482944694284106!GO:0043284;biopolymer biosynthetic process;0.00491622460948388!GO:0006950;response to stress;0.00500146506992608!GO:0032508;DNA duplex unwinding;0.00505189421180369!GO:0032392;DNA geometric change;0.00505189421180369!GO:0048518;positive regulation of biological process;0.00515508384045541!GO:0008250;oligosaccharyl transferase complex;0.00529034548017355!GO:0046474;glycerophospholipid biosynthetic process;0.00529866572789668!GO:0006897;endocytosis;0.00537350386155159!GO:0010324;membrane invagination;0.00537350386155159!GO:0033673;negative regulation of kinase activity;0.00547944962746869!GO:0006469;negative regulation of protein kinase activity;0.00547944962746869!GO:0005874;microtubule;0.0055849483124266!GO:0045893;positive regulation of transcription, DNA-dependent;0.00562663574540542!GO:0003682;chromatin binding;0.00569280312459185!GO:0051348;negative regulation of transferase activity;0.00570483960165053!GO:0006383;transcription from RNA polymerase III promoter;0.00570770998887123!GO:0003729;mRNA binding;0.0057654071775265!GO:0006509;membrane protein ectodomain proteolysis;0.0057654071775265!GO:0033619;membrane protein proteolysis;0.0057654071775265!GO:0015631;tubulin binding;0.00580387682268353!GO:0015992;proton transport;0.00580682076315578!GO:0004674;protein serine/threonine kinase activity;0.00592157542119773!GO:0030132;clathrin coat of coated pit;0.00604126309010045!GO:0006818;hydrogen transport;0.00619024533033757!GO:0016481;negative regulation of transcription;0.00623206115871148!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00637366041197838!GO:0007050;cell cycle arrest;0.00643966451147064!GO:0005774;vacuolar membrane;0.00643975270795613!GO:0006268;DNA unwinding during replication;0.0064956366970924!GO:0030176;integral to endoplasmic reticulum membrane;0.00666581683830588!GO:0006695;cholesterol biosynthetic process;0.0066970951623153!GO:0000075;cell cycle checkpoint;0.00688991230472637!GO:0030695;GTPase regulator activity;0.00690997764631017!GO:0005083;small GTPase regulator activity;0.00697334731810422!GO:0046467;membrane lipid biosynthetic process;0.00703290170971545!GO:0030041;actin filament polymerization;0.00706848268564049!GO:0044433;cytoplasmic vesicle part;0.0071095911135671!GO:0008094;DNA-dependent ATPase activity;0.00714345171236113!GO:0035258;steroid hormone receptor binding;0.00715306839956856!GO:0000775;chromosome, pericentric region;0.00715974662139354!GO:0050662;coenzyme binding;0.00717460186349486!GO:0003779;actin binding;0.00726775709457851!GO:0005657;replication fork;0.00753742022010037!GO:0030663;COPI coated vesicle membrane;0.00771817458771747!GO:0030126;COPI vesicle coat;0.00771817458771747!GO:0006778;porphyrin metabolic process;0.007738286685453!GO:0033013;tetrapyrrole metabolic process;0.007738286685453!GO:0006891;intra-Golgi vesicle-mediated transport;0.00773963603121582!GO:0015036;disulfide oxidoreductase activity;0.00793887369098546!GO:0006402;mRNA catabolic process;0.00808233924095609!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0084300313699778!GO:0051101;regulation of DNA binding;0.00866076227372488!GO:0030127;COPII vesicle coat;0.00875272600728451!GO:0012507;ER to Golgi transport vesicle membrane;0.00875272600728451!GO:0005637;nuclear inner membrane;0.00894035926545302!GO:0043086;negative regulation of catalytic activity;0.00907717480989965!GO:0006611;protein export from nucleus;0.00914464565536181!GO:0006401;RNA catabolic process;0.00915291370757033!GO:0008033;tRNA processing;0.00926220996407729!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00929417729710508!GO:0000082;G1/S transition of mitotic cell cycle;0.00932580274936264!GO:0031902;late endosome membrane;0.00940663662291741!GO:0018196;peptidyl-asparagine modification;0.00957150809338229!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00957150809338229!GO:0008154;actin polymerization and/or depolymerization;0.00963231597817173!GO:0046489;phosphoinositide biosynthetic process;0.00964610199835896!GO:0004576;oligosaccharyl transferase activity;0.00967811505460063!GO:0019222;regulation of metabolic process;0.00988256753916024!GO:0030660;Golgi-associated vesicle membrane;0.00995076924981649!GO:0048500;signal recognition particle;0.0100875260371594!GO:0006740;NADPH regeneration;0.0103248981291119!GO:0006098;pentose-phosphate shunt;0.0103248981291119!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0103248981291119!GO:0030521;androgen receptor signaling pathway;0.0103248981291119!GO:0003711;transcription elongation regulator activity;0.0104530021566732!GO:0006289;nucleotide-excision repair;0.0106858861565352!GO:0006595;polyamine metabolic process;0.0110765574841033!GO:0030118;clathrin coat;0.0113263206074759!GO:0042168;heme metabolic process;0.0114157179692487!GO:0030137;COPI-coated vesicle;0.011537461174661!GO:0009966;regulation of signal transduction;0.0118271609295048!GO:0003678;DNA helicase activity;0.0119282361680287!GO:0007266;Rho protein signal transduction;0.0124740969640419!GO:0008610;lipid biosynthetic process;0.0128525890947816!GO:0045045;secretory pathway;0.0129863872352193!GO:0006352;transcription initiation;0.0133668593699853!GO:0000287;magnesium ion binding;0.0134388793524139!GO:0006284;base-excision repair;0.0136287746759563!GO:0044437;vacuolar part;0.0137159875344539!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0139280856796394!GO:0001726;ruffle;0.0143463982442497!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0144161188015533!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0144161188015533!GO:0005862;muscle thin filament tropomyosin;0.0146963958846644!GO:0048468;cell development;0.0150147786691554!GO:0005765;lysosomal membrane;0.0150411826607401!GO:0051098;regulation of binding;0.0155376532405544!GO:0016272;prefoldin complex;0.0156613866159912!GO:0005832;chaperonin-containing T-complex;0.015730713410436!GO:0012506;vesicle membrane;0.0162231253096736!GO:0008312;7S RNA binding;0.0162988751004574!GO:0040008;regulation of growth;0.0165890582973163!GO:0003746;translation elongation factor activity;0.0167228711290034!GO:0048660;regulation of smooth muscle cell proliferation;0.0167343580752504!GO:0001568;blood vessel development;0.0168068542326014!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0172524180936647!GO:0045879;negative regulation of smoothened signaling pathway;0.0172524180936647!GO:0051287;NAD binding;0.0172617024282133!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0181466437474743!GO:0015002;heme-copper terminal oxidase activity;0.0181466437474743!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0181466437474743!GO:0004129;cytochrome-c oxidase activity;0.0181466437474743!GO:0005869;dynactin complex;0.0183491903877316!GO:0008637;apoptotic mitochondrial changes;0.0183491903877316!GO:0004177;aminopeptidase activity;0.0183789022991091!GO:0022890;inorganic cation transmembrane transporter activity;0.0184847937345123!GO:0045792;negative regulation of cell size;0.0185757362599005!GO:0006497;protein amino acid lipidation;0.0188296067245928!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0188935743863917!GO:0022408;negative regulation of cell-cell adhesion;0.0189908830271649!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0189908830271649!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0191797706930133!GO:0043022;ribosome binding;0.0191839600122532!GO:0016197;endosome transport;0.0194200072757052!GO:0043189;H4/H2A histone acetyltransferase complex;0.0194200072757052!GO:0007040;lysosome organization and biogenesis;0.019766587907273!GO:0030308;negative regulation of cell growth;0.0199813188963933!GO:0043065;positive regulation of apoptosis;0.0201352775209691!GO:0022415;viral reproductive process;0.0202965779203636!GO:0003756;protein disulfide isomerase activity;0.0209473195080289!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0209473195080289!GO:0006007;glucose catabolic process;0.0214289923690022!GO:0008287;protein serine/threonine phosphatase complex;0.0217663487736371!GO:0001953;negative regulation of cell-matrix adhesion;0.0218567237004803!GO:0051540;metal cluster binding;0.0218644365306749!GO:0051536;iron-sulfur cluster binding;0.0218644365306749!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0228977099876493!GO:0045047;protein targeting to ER;0.0228977099876493!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0229543418860918!GO:0043068;positive regulation of programmed cell death;0.0234747980317714!GO:0009112;nucleobase metabolic process;0.0235523625875369!GO:0000209;protein polyubiquitination;0.0236570121674693!GO:0009116;nucleoside metabolic process;0.0246080346887102!GO:0016311;dephosphorylation;0.0246680989670315!GO:0006779;porphyrin biosynthetic process;0.0246680989670315!GO:0033014;tetrapyrrole biosynthetic process;0.0246680989670315!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.025063176967708!GO:0007088;regulation of mitosis;0.0252262105239066!GO:0006979;response to oxidative stress;0.0257066210496595!GO:0007034;vacuolar transport;0.0261800193436507!GO:0030833;regulation of actin filament polymerization;0.0261875600483875!GO:0046822;regulation of nucleocytoplasmic transport;0.026314813029945!GO:0007021;tubulin folding;0.026314813029945!GO:0001944;vasculature development;0.026314813029945!GO:0030145;manganese ion binding;0.0264519996896032!GO:0006650;glycerophospholipid metabolic process;0.0266915317595041!GO:0047485;protein N-terminus binding;0.0266915317595041!GO:0000049;tRNA binding;0.0266915317595041!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0269440399984842!GO:0009303;rRNA transcription;0.026951521955734!GO:0035267;NuA4 histone acetyltransferase complex;0.0269654429383183!GO:0006417;regulation of translation;0.0269872726588407!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0271635285654411!GO:0006892;post-Golgi vesicle-mediated transport;0.0272608972239977!GO:0008629;induction of apoptosis by intracellular signals;0.0272919167434313!GO:0035035;histone acetyltransferase binding;0.0274283511264594!GO:0031418;L-ascorbic acid binding;0.0278333191192494!GO:0005669;transcription factor TFIID complex;0.0282370295387873!GO:0033559;unsaturated fatty acid metabolic process;0.0283521794542209!GO:0006636;unsaturated fatty acid biosynthetic process;0.0283521794542209!GO:0008180;signalosome;0.0285670231456973!GO:0003690;double-stranded DNA binding;0.0286038189467307!GO:0030119;AP-type membrane coat adaptor complex;0.0290434776603564!GO:0006405;RNA export from nucleus;0.0290972970554259!GO:0019904;protein domain specific binding;0.0294790533849456!GO:0000123;histone acetyltransferase complex;0.0300776677552236!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0300944188896086!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0300944188896086!GO:0051128;regulation of cellular component organization and biogenesis;0.0310825843395946!GO:0031124;mRNA 3'-end processing;0.0314363425051655!GO:0032984;macromolecular complex disassembly;0.0318285958166433!GO:0043281;regulation of caspase activity;0.0324285762771927!GO:0006082;organic acid metabolic process;0.0327544149606035!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0327544149606035!GO:0031272;regulation of pseudopodium formation;0.0327544149606035!GO:0031269;pseudopodium formation;0.0327544149606035!GO:0031344;regulation of cell projection organization and biogenesis;0.0327544149606035!GO:0031268;pseudopodium organization and biogenesis;0.0327544149606035!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0327544149606035!GO:0031274;positive regulation of pseudopodium formation;0.0327544149606035!GO:0008538;proteasome activator activity;0.033083571399949!GO:0000339;RNA cap binding;0.0333642692855325!GO:0031625;ubiquitin protein ligase binding;0.0333642692855325!GO:0005092;GDP-dissociation inhibitor activity;0.0342059938766269!GO:0006338;chromatin remodeling;0.0342137938139527!GO:0006376;mRNA splice site selection;0.0343564259923788!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0343564259923788!GO:0043433;negative regulation of transcription factor activity;0.0346755310981988!GO:0004003;ATP-dependent DNA helicase activity;0.035516902800257!GO:0019752;carboxylic acid metabolic process;0.0355980778611209!GO:0005100;Rho GTPase activator activity;0.0355980778611209!GO:0008022;protein C-terminus binding;0.036009202465538!GO:0006354;RNA elongation;0.0363015726051485!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0363506976173011!GO:0042585;germinal vesicle;0.0364627850314476!GO:0005099;Ras GTPase activator activity;0.0364788027619327!GO:0006783;heme biosynthetic process;0.0364788027619327!GO:0006807;nitrogen compound metabolic process;0.0365938998578216!GO:0007052;mitotic spindle organization and biogenesis;0.0366354365615403!GO:0043624;cellular protein complex disassembly;0.03667012526904!GO:0000096;sulfur amino acid metabolic process;0.0372224851582134!GO:0030433;ER-associated protein catabolic process;0.0372788919512783!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0372788919512783!GO:0051338;regulation of transferase activity;0.0373483837548004!GO:0005851;eukaryotic translation initiation factor 2B complex;0.037681503565943!GO:0004680;casein kinase activity;0.0377623023078705!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0377623023078705!GO:0031529;ruffle organization and biogenesis;0.0384032550491663!GO:0000159;protein phosphatase type 2A complex;0.0384053698148621!GO:0007346;regulation of progression through mitotic cell cycle;0.0384232255776186!GO:0019318;hexose metabolic process;0.0384895354080876!GO:0007033;vacuole organization and biogenesis;0.0385049899779581!GO:0016791;phosphoric monoester hydrolase activity;0.0391139290632651!GO:0050811;GABA receptor binding;0.0391186707740653!GO:0006790;sulfur metabolic process;0.0391186707740653!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0393112910245736!GO:0006739;NADP metabolic process;0.0393112910245736!GO:0031901;early endosome membrane;0.0393393177177009!GO:0006917;induction of apoptosis;0.0394503216120828!GO:0043407;negative regulation of MAP kinase activity;0.0397044478782653!GO:0030384;phosphoinositide metabolic process;0.0399617444870895!GO:0050681;androgen receptor binding;0.0403284549575957!GO:0030131;clathrin adaptor complex;0.0405990051201594!GO:0043241;protein complex disassembly;0.0409642378477996!GO:0048659;smooth muscle cell proliferation;0.0416542352276762!GO:0008601;protein phosphatase type 2A regulator activity;0.0416542352276762!GO:0045926;negative regulation of growth;0.0421535589095772!GO:0051270;regulation of cell motility;0.0422181719622097!GO:0005996;monosaccharide metabolic process;0.0424339820256775!GO:0006643;membrane lipid metabolic process;0.0432566377111202!GO:0008234;cysteine-type peptidase activity;0.0434319631984704!GO:0005784;translocon complex;0.0436698560809862!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0440233355605013!GO:0030508;thiol-disulfide exchange intermediate activity;0.0451984706543838!GO:0004722;protein serine/threonine phosphatase activity;0.0454218830209857!GO:0009893;positive regulation of metabolic process;0.0454218830209857!GO:0005876;spindle microtubule;0.045434845097461!GO:0004197;cysteine-type endopeptidase activity;0.0456579934289853!GO:0051090;regulation of transcription factor activity;0.0456579934289853!GO:0006506;GPI anchor biosynthetic process;0.046039778735782!GO:0030125;clathrin vesicle coat;0.0463507660689976!GO:0030665;clathrin coated vesicle membrane;0.0463507660689976!GO:0030911;TPR domain binding;0.0470625829096593!GO:0006458;'de novo' protein folding;0.0470625829096593!GO:0051084;'de novo' posttranslational protein folding;0.0470625829096593!GO:0051059;NF-kappaB binding;0.0470625829096593!GO:0030496;midbody;0.0471641110809581!GO:0022406;membrane docking;0.0474590548590188!GO:0048278;vesicle docking;0.0474590548590188!GO:0009889;regulation of biosynthetic process;0.0474590548590188!GO:0006520;amino acid metabolic process;0.0479640126743212!GO:0012502;induction of programmed cell death;0.0482990188742827!GO:0042770;DNA damage response, signal transduction;0.0483773204381368!GO:0042158;lipoprotein biosynthetic process;0.0484024391649419!GO:0051539;4 iron, 4 sulfur cluster binding;0.0488153481661437!GO:0006368;RNA elongation from RNA polymerase II promoter;0.048930988958674!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0490213101929305!GO:0010257;NADH dehydrogenase complex assembly;0.0490213101929305!GO:0033108;mitochondrial respiratory chain complex assembly;0.0490213101929305!GO:0000776;kinetochore;0.0491315708437798!GO:0040011;locomotion;0.0491782340884197!GO:0030032;lamellipodium biogenesis;0.049260029467981!GO:0006302;double-strand break repair;0.0496033552047237!GO:0031543;peptidyl-proline dioxygenase activity;0.0497489821634555 | |||
|sample_id=11340 | |sample_id=11340 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=aorta | |sample_tissue=aorta | ||
|top_motifs=SOX{8,9,10}:1.69279531628;TLX1..3_NFIC{dimer}:1.39141467412;AR:1.19030531435;NFATC1..3:1.11344969271;RXR{A,B,G}:1.02087864582;GATA6:1.01743903575;SOX2:0.932125770505;TFAP4:0.895655390756;ZNF148:0.892224444632;ADNP_IRX_SIX_ZHX:0.856652597849;NANOG:0.787656806062;PAX1,9:0.761452882917;ETS1,2:0.703134787994;IKZF1:0.694487067444;XCPE1{core}:0.68861940087;HIC1:0.671617058513;CRX:0.670753412663;PAX6:0.664084243997;GTF2A1,2:0.662655834749;FOXL1:0.631554001346;LHX3,4:0.623873200104;TFAP2{A,C}:0.620975490178;RORA:0.620435029429;TP53:0.619188253609;SOX5:0.618506874454;PITX1..3:0.606411600992;LEF1_TCF7_TCF7L1,2:0.584835878759;PAX8:0.574395152731;HBP1_HMGB_SSRP1_UBTF:0.533447529986;HES1:0.518568260364;ZNF423:0.489599356842;ELF1,2,4:0.464665290633;SPIB:0.464213389273;CDC5L:0.42081218655;MTE{core}:0.396144070812;GATA4:0.393692750436;SOX17:0.377094024699;TFDP1:0.3732342004;HAND1,2:0.37194856061;TFAP2B:0.342235972808;POU3F1..4:0.337968038444;TEAD1:0.332246529646;NR3C1:0.33217658846;ZNF238:0.28887039044;GFI1B:0.26507456734;BACH2:0.261531520175;FOXA2:0.254155238188;NFE2:0.246893251982;PBX1:0.245929602716;ZFP161:0.225483009758;FOS_FOS{B,L1}_JUN{B,D}:0.212811585426;SP1:0.212216236345;NKX2-2,8:0.212053630306;GFI1:0.201022416102;bHLH_family:0.200845669071;GZF1:0.19829000066;PAX5:0.197599843282;IKZF2:0.168763918891;FOXM1:0.150902197182;HOX{A5,B5}:0.142713503223;SMAD1..7,9:0.142180423682;REST:0.135613206852;NR5A1,2:0.123335916325;ARID5B:0.117385982903;MYB:0.114851494132;FOXD3:0.111456633516;LMO2:0.106290598127;GLI1..3:0.105997568107;ZIC1..3:0.104128106432;ZBTB6:0.100459051275;FOX{I1,J2}:0.0808541160902;HNF4A_NR2F1,2:0.0797266300367;SRF:0.0778857160652;FOSL2:0.0719082886326;GTF2I:0.0708398814189;ONECUT1,2:0.0690297064401;E2F1..5:0.0685574063877;NFE2L1:0.0529008742895;SPZ1:0.0315938054164;NFE2L2:0.0287949094741;PPARG:0.0227990544231;MAZ:0.00673333277672;EBF1:0.00495866154014;NHLH1,2:0.00482662493968;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.000666716855066;TFCP2:-0.0141515374882;MYOD1:-0.0194155712555;NKX3-2:-0.050825272979;MED-1{core}:-0.0599606880206;TBP:-0.080558556878;EGR1..3:-0.0879494971728;STAT5{A,B}:-0.0929854753876;SPI1:-0.0966848889348;NFY{A,B,C}:-0.114813025675;MEF2{A,B,C,D}:-0.122912667097;ESRRA:-0.123206630762;HOXA9_MEIS1:-0.145684113301;UFEwm:-0.148734082903;ZNF143:-0.149268165301;POU2F1..3:-0.15185078081;RREB1:-0.160704796784;POU1F1:-0.181016636951;STAT2,4,6:-0.182399908694;HNF1A:-0.184485349942;OCT4_SOX2{dimer}:-0.187843218657;KLF4:-0.210161065151;HMGA1,2:-0.21123103789;EN1,2:-0.215812599108;ALX1:-0.242714036305;PAX4:-0.246785023702;MTF1:-0.254854317662;T:-0.256406754769;PRRX1,2:-0.281790691094;PATZ1:-0.296003494928;PAX2:-0.310560955968;DBP:-0.342614488095;NFKB1_REL_RELA:-0.343928791114;PRDM1:-0.34436193759;JUN:-0.351751667073;MYBL2:-0.360730873613;MZF1:-0.367270546361;ATF2:-0.387407381223;HOX{A6,A7,B6,B7}:-0.402602797296;FOX{D1,D2}:-0.406815310575;SNAI1..3:-0.413221491359;PAX3,7:-0.415075265175;HLF:-0.421273475516;RFX1:-0.42768989222;CUX2:-0.428997196224;NRF1:-0.429642784346;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.430292409885;NKX2-3_NKX2-5:-0.434627215736;TAL1_TCF{3,4,12}:-0.436132655589;GCM1,2:-0.46977314743;TOPORS:-0.471698279486;HMX1:-0.476674676851;BPTF:-0.479243273477;RUNX1..3:-0.489689855645;EP300:-0.490435088973;TLX2:-0.497238023883;YY1:-0.513165120512;POU6F1:-0.516496881355;POU5F1:-0.517990191394;NR1H4:-0.532517143264;FOXO1,3,4:-0.534763010351;VSX1,2:-0.547942746429;RBPJ:-0.557648369297;EVI1:-0.576137635906;CEBPA,B_DDIT3:-0.581992417276;DMAP1_NCOR{1,2}_SMARC:-0.582353980005;FOXP1:-0.5846424957;ATF6:-0.618074204233;IRF1,2:-0.629101575952;TGIF1:-0.629191732671;FOXQ1:-0.631465168145;FOXP3:-0.632607328763;MYFfamily:-0.650886238975;IRF7:-0.654065755068;NFIL3:-0.655398492122;ZEB1:-0.676553876769;NANOG{mouse}:-0.689682481319;FOX{F1,F2,J1}:-0.690968102426;RXRA_VDR{dimer}:-0.727395762059;BREu{core}:-0.73478178678;AHR_ARNT_ARNT2:-0.73555403573;ALX4:-0.743363643789;ZBTB16:-0.74474322496;XBP1:-0.790579606292;TEF:-0.798332315679;HSF1,2:-0.805458920313;ELK1,4_GABP{A,B1}:-0.850577476236;STAT1,3:-0.860085707526;HIF1A:-0.876512825325;FOXN1:-0.929450154423;ESR1:-0.939493726614;AIRE:-0.973803122586;NFIX:-0.980518077377;SREBF1,2:-1.01908737443;ZNF384:-1.02199317113;NKX6-1,2:-1.02954706463;ATF5_CREB3:-1.07919970717;TBX4,5:-1.11633565775;PDX1:-1.12339058341;NR6A1:-1.13591060547;RFX2..5_RFXANK_RFXAP:-1.13615724112;CDX1,2,4:-1.14662843318;ATF4:-1.16740772926;NKX3-1:-1.17148424149;MAFB:-1.17609766675;NKX2-1,4:-1.1954717908;CREB1:-1.20898202503;HOX{A4,D4}:-1.40712173386 | |top_motifs=SOX{8,9,10}:1.69279531628;TLX1..3_NFIC{dimer}:1.39141467412;AR:1.19030531435;NFATC1..3:1.11344969271;RXR{A,B,G}:1.02087864582;GATA6:1.01743903575;SOX2:0.932125770505;TFAP4:0.895655390756;ZNF148:0.892224444632;ADNP_IRX_SIX_ZHX:0.856652597849;NANOG:0.787656806062;PAX1,9:0.761452882917;ETS1,2:0.703134787994;IKZF1:0.694487067444;XCPE1{core}:0.68861940087;HIC1:0.671617058513;CRX:0.670753412663;PAX6:0.664084243997;GTF2A1,2:0.662655834749;FOXL1:0.631554001346;LHX3,4:0.623873200104;TFAP2{A,C}:0.620975490178;RORA:0.620435029429;TP53:0.619188253609;SOX5:0.618506874454;PITX1..3:0.606411600992;LEF1_TCF7_TCF7L1,2:0.584835878759;PAX8:0.574395152731;HBP1_HMGB_SSRP1_UBTF:0.533447529986;HES1:0.518568260364;ZNF423:0.489599356842;ELF1,2,4:0.464665290633;SPIB:0.464213389273;CDC5L:0.42081218655;MTE{core}:0.396144070812;GATA4:0.393692750436;SOX17:0.377094024699;TFDP1:0.3732342004;HAND1,2:0.37194856061;TFAP2B:0.342235972808;POU3F1..4:0.337968038444;TEAD1:0.332246529646;NR3C1:0.33217658846;ZNF238:0.28887039044;GFI1B:0.26507456734;BACH2:0.261531520175;FOXA2:0.254155238188;NFE2:0.246893251982;PBX1:0.245929602716;ZFP161:0.225483009758;FOS_FOS{B,L1}_JUN{B,D}:0.212811585426;SP1:0.212216236345;NKX2-2,8:0.212053630306;GFI1:0.201022416102;bHLH_family:0.200845669071;GZF1:0.19829000066;PAX5:0.197599843282;IKZF2:0.168763918891;FOXM1:0.150902197182;HOX{A5,B5}:0.142713503223;SMAD1..7,9:0.142180423682;REST:0.135613206852;NR5A1,2:0.123335916325;ARID5B:0.117385982903;MYB:0.114851494132;FOXD3:0.111456633516;LMO2:0.106290598127;GLI1..3:0.105997568107;ZIC1..3:0.104128106432;ZBTB6:0.100459051275;FOX{I1,J2}:0.0808541160902;HNF4A_NR2F1,2:0.0797266300367;SRF:0.0778857160652;FOSL2:0.0719082886326;GTF2I:0.0708398814189;ONECUT1,2:0.0690297064401;E2F1..5:0.0685574063877;NFE2L1:0.0529008742895;SPZ1:0.0315938054164;NFE2L2:0.0287949094741;PPARG:0.0227990544231;MAZ:0.00673333277672;EBF1:0.00495866154014;NHLH1,2:0.00482662493968;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.000666716855066;TFCP2:-0.0141515374882;MYOD1:-0.0194155712555;NKX3-2:-0.050825272979;MED-1{core}:-0.0599606880206;TBP:-0.080558556878;EGR1..3:-0.0879494971728;STAT5{A,B}:-0.0929854753876;SPI1:-0.0966848889348;NFY{A,B,C}:-0.114813025675;MEF2{A,B,C,D}:-0.122912667097;ESRRA:-0.123206630762;HOXA9_MEIS1:-0.145684113301;UFEwm:-0.148734082903;ZNF143:-0.149268165301;POU2F1..3:-0.15185078081;RREB1:-0.160704796784;POU1F1:-0.181016636951;STAT2,4,6:-0.182399908694;HNF1A:-0.184485349942;OCT4_SOX2{dimer}:-0.187843218657;KLF4:-0.210161065151;HMGA1,2:-0.21123103789;EN1,2:-0.215812599108;ALX1:-0.242714036305;PAX4:-0.246785023702;MTF1:-0.254854317662;T:-0.256406754769;PRRX1,2:-0.281790691094;PATZ1:-0.296003494928;PAX2:-0.310560955968;DBP:-0.342614488095;NFKB1_REL_RELA:-0.343928791114;PRDM1:-0.34436193759;JUN:-0.351751667073;MYBL2:-0.360730873613;MZF1:-0.367270546361;ATF2:-0.387407381223;HOX{A6,A7,B6,B7}:-0.402602797296;FOX{D1,D2}:-0.406815310575;SNAI1..3:-0.413221491359;PAX3,7:-0.415075265175;HLF:-0.421273475516;RFX1:-0.42768989222;CUX2:-0.428997196224;NRF1:-0.429642784346;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.430292409885;NKX2-3_NKX2-5:-0.434627215736;TAL1_TCF{3,4,12}:-0.436132655589;GCM1,2:-0.46977314743;TOPORS:-0.471698279486;HMX1:-0.476674676851;BPTF:-0.479243273477;RUNX1..3:-0.489689855645;EP300:-0.490435088973;TLX2:-0.497238023883;YY1:-0.513165120512;POU6F1:-0.516496881355;POU5F1:-0.517990191394;NR1H4:-0.532517143264;FOXO1,3,4:-0.534763010351;VSX1,2:-0.547942746429;RBPJ:-0.557648369297;EVI1:-0.576137635906;CEBPA,B_DDIT3:-0.581992417276;DMAP1_NCOR{1,2}_SMARC:-0.582353980005;FOXP1:-0.5846424957;ATF6:-0.618074204233;IRF1,2:-0.629101575952;TGIF1:-0.629191732671;FOXQ1:-0.631465168145;FOXP3:-0.632607328763;MYFfamily:-0.650886238975;IRF7:-0.654065755068;NFIL3:-0.655398492122;ZEB1:-0.676553876769;NANOG{mouse}:-0.689682481319;FOX{F1,F2,J1}:-0.690968102426;RXRA_VDR{dimer}:-0.727395762059;BREu{core}:-0.73478178678;AHR_ARNT_ARNT2:-0.73555403573;ALX4:-0.743363643789;ZBTB16:-0.74474322496;XBP1:-0.790579606292;TEF:-0.798332315679;HSF1,2:-0.805458920313;ELK1,4_GABP{A,B1}:-0.850577476236;STAT1,3:-0.860085707526;HIF1A:-0.876512825325;FOXN1:-0.929450154423;ESR1:-0.939493726614;AIRE:-0.973803122586;NFIX:-0.980518077377;SREBF1,2:-1.01908737443;ZNF384:-1.02199317113;NKX6-1,2:-1.02954706463;ATF5_CREB3:-1.07919970717;TBX4,5:-1.11633565775;PDX1:-1.12339058341;NR6A1:-1.13591060547;RFX2..5_RFXANK_RFXAP:-1.13615724112;CDX1,2,4:-1.14662843318;ATF4:-1.16740772926;NKX3-1:-1.17148424149;MAFB:-1.17609766675;NKX2-1,4:-1.1954717908;CREB1:-1.20898202503;HOX{A4,D4}:-1.40712173386 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11340-117F8;search_select_hide=table117:FF:11340-117F8 | |||
}} | }} | ||
Latest revision as of 17:53, 4 June 2020
| Name: | Endothelial Cells - Aortic, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11375 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11375
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11375
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.503 |
| 10 | 10 | 0.226 |
| 100 | 100 | 0.946 |
| 101 | 101 | 0.537 |
| 102 | 102 | 0.82 |
| 103 | 103 | 0.695 |
| 104 | 104 | 0.889 |
| 105 | 105 | 0.633 |
| 106 | 106 | 0.0356 |
| 107 | 107 | 0.00135 |
| 108 | 108 | 0.605 |
| 109 | 109 | 0.144 |
| 11 | 11 | 0.118 |
| 110 | 110 | 0.0315 |
| 111 | 111 | 0.0812 |
| 112 | 112 | 0.672 |
| 113 | 113 | 0.708 |
| 114 | 114 | 0.136 |
| 115 | 115 | 0.822 |
| 116 | 116 | 0.908 |
| 117 | 117 | 0.804 |
| 118 | 118 | 0.521 |
| 119 | 119 | 0.38 |
| 12 | 12 | 0.629 |
| 120 | 120 | 0.102 |
| 121 | 121 | 0.665 |
| 122 | 122 | 0.781 |
| 123 | 123 | 0.501 |
| 124 | 124 | 0.494 |
| 125 | 125 | 0.856 |
| 126 | 126 | 0.64 |
| 127 | 127 | 0.991 |
| 128 | 128 | 0.331 |
| 129 | 129 | 0.378 |
| 13 | 13 | 0.86 |
| 130 | 130 | 0.876 |
| 131 | 131 | 0.599 |
| 132 | 132 | 0.297 |
| 133 | 133 | 0.419 |
| 134 | 134 | 0.575 |
| 135 | 135 | 0.262 |
| 136 | 136 | 0.33 |
| 137 | 137 | 0.252 |
| 138 | 138 | 0.739 |
| 139 | 139 | 0.874 |
| 14 | 14 | 0.987 |
| 140 | 140 | 0.847 |
| 141 | 141 | 0.444 |
| 142 | 142 | 0.411 |
| 143 | 143 | 0.128 |
| 144 | 144 | 0.482 |
| 145 | 145 | 0.0333 |
| 146 | 146 | 0.285 |
| 147 | 147 | 0.157 |
| 148 | 148 | 0.404 |
| 149 | 149 | 0.0174 |
| 15 | 15 | 0.656 |
| 150 | 150 | 0.184 |
| 151 | 151 | 0.405 |
| 152 | 152 | 0.0159 |
| 153 | 153 | 0.265 |
| 154 | 154 | 0.618 |
| 155 | 155 | 0.676 |
| 156 | 156 | 0.0699 |
| 157 | 157 | 0.705 |
| 158 | 158 | 0.173 |
| 159 | 159 | 0.608 |
| 16 | 16 | 0.832 |
| 160 | 160 | 0.0118 |
| 161 | 161 | 0.268 |
| 162 | 162 | 0.511 |
| 163 | 163 | 0.875 |
| 164 | 164 | 0.638 |
| 165 | 165 | 0.426 |
| 166 | 166 | 0.489 |
| 167 | 167 | 0.0302 |
| 168 | 168 | 0.263 |
| 169 | 169 | 0.0513 |
| 17 | 17 | 0.119 |
| 18 | 18 | 0.8 |
| 19 | 19 | 0.114 |
| 2 | 2 | 0.459 |
| 20 | 20 | 0.926 |
| 21 | 21 | 0.954 |
| 22 | 22 | 0.216 |
| 23 | 23 | 0.0613 |
| 24 | 24 | 0.446 |
| 25 | 25 | 0.504 |
| 26 | 26 | 0.732 |
| 27 | 27 | 0.454 |
| 28 | 28 | 0.161 |
| 29 | 29 | 0.539 |
| 3 | 3 | 0.665 |
| 30 | 30 | 0.793 |
| 31 | 31 | 0.949 |
| 32 | 32 | 0.609 |
| 33 | 33 | 0.354 |
| 34 | 34 | 0.114 |
| 35 | 35 | 0.329 |
| 36 | 36 | 0.262 |
| 37 | 37 | 0.505 |
| 38 | 38 | 0.106 |
| 39 | 39 | 0.199 |
| 4 | 4 | 0.606 |
| 40 | 40 | 0.00484 |
| 41 | 41 | 0.0501 |
| 42 | 42 | 0.365 |
| 43 | 43 | 0.575 |
| 44 | 44 | 0.635 |
| 45 | 45 | 0.213 |
| 46 | 46 | 0.207 |
| 47 | 47 | 0.371 |
| 48 | 48 | 0.047 |
| 49 | 49 | 0.732 |
| 5 | 5 | 0.726 |
| 50 | 50 | 0.587 |
| 51 | 51 | 0.574 |
| 52 | 52 | 0.477 |
| 53 | 53 | 0.878 |
| 54 | 54 | 0.489 |
| 55 | 55 | 0.78 |
| 56 | 56 | 0.492 |
| 57 | 57 | 0.213 |
| 58 | 58 | 0.423 |
| 59 | 59 | 0.173 |
| 6 | 6 | 0.28 |
| 60 | 60 | 0.538 |
| 61 | 61 | 0.707 |
| 62 | 62 | 0.983 |
| 63 | 63 | 0.135 |
| 64 | 64 | 0.525 |
| 65 | 65 | 0.0992 |
| 66 | 66 | 0.102 |
| 67 | 67 | 0.639 |
| 68 | 68 | 0.221 |
| 69 | 69 | 0.226 |
| 7 | 7 | 0.677 |
| 70 | 70 | 0.878 |
| 71 | 71 | 0.925 |
| 72 | 72 | 0.757 |
| 73 | 73 | 0.00455 |
| 74 | 74 | 0.478 |
| 75 | 75 | 0.47 |
| 76 | 76 | 0.362 |
| 77 | 77 | 0.119 |
| 78 | 78 | 0.67 |
| 79 | 79 | 0.73 |
| 8 | 8 | 0.0375 |
| 80 | 80 | 0.274 |
| 81 | 81 | 0.506 |
| 82 | 82 | 0.94 |
| 83 | 83 | 0.546 |
| 84 | 84 | 0.242 |
| 85 | 85 | 0.977 |
| 86 | 86 | 0.771 |
| 87 | 87 | 0.312 |
| 88 | 88 | 0.986 |
| 89 | 89 | 0.505 |
| 9 | 9 | 0.191 |
| 90 | 90 | 0.733 |
| 91 | 91 | 0.306 |
| 92 | 92 | 0.301 |
| 93 | 93 | 0.952 |
| 94 | 94 | 0.815 |
| 95 | 95 | 0.312 |
| 96 | 96 | 0.271 |
| 97 | 97 | 0.505 |
| 98 | 98 | 0.189 |
| 99 | 99 | 0.00223 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11375
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000048 human endothelial cell of the aorta sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)
0002544 (aortic endothelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0004573 (systemic artery)
0000487 (simple squamous epithelium)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000048 (human endothelial cell of the aorta sample)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)
