FF:13317-143A5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005327 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008597;DRR009469;DRZ000894;DRZ002279;DRZ012244;DRZ013629 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0000255,CL:0000235 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000357,FF:0000086,FF:0000647,FF:0011215 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|donor= donor2 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor2%2520%2528150_120%253aUd_0h%2529.CNhs13646.13317-143A5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor2%2520%2528150_120%253aUd_0h%2529.CNhs13646.13317-143A5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor2%2520%2528150_120%253aUd_0h%2529.CNhs13646.13317-143A5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor2%2520%2528150_120%253aUd_0h%2529.CNhs13646.13317-143A5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor2%2520%2528150_120%253aUd_0h%2529.CNhs13646.13317-143A5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:13317-143A5 | |id=FF:13317-143A5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011215 | ||
|name=Monocyte-derived macrophages response to udorn influenza infection | |is_obsolete= | ||
|library_id=CNhs13646 | |||
|library_id_phase_based=2:CNhs13646 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;13317 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;13317 | |||
|name=Monocyte-derived macrophages response to udorn influenza infection | |||
|namespace= | |namespace= | ||
|part_of= | |part_of= | ||
| Line 44: | Line 64: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.172808179578577,0,0,0,0,0.185298329070769,0,0.462285380991182,0.518370314846771,0,0,0,0,0,0,0,0,0,0,0.535607460328699,0,0,0.382284449980271,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.368095594070894,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.345616359157155,0,-0.0302443085504878,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.345616359157155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.552571649267773,0,0,0,-0.165443407976781,-0.211197402695869,0.172808179578577,0,0,0,0.247581007919449,0.19518918615591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.284067543171038,0.455406406044558,0,0,0,0,0,0 | |||
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| |||
|rna_box=143 | |rna_box=143 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=7.61 | |rna_weight_ug=7.61 | ||
|sample_age=adult | |sample_age=adult | ||
|sample_category=time courses | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=Primary | |sample_cell_line=Primary | ||
| Line 69: | Line 93: | ||
|sample_ethnicity=Caucasian | |sample_ethnicity=Caucasian | ||
|sample_experimental_condition=Ud 0h | |sample_experimental_condition=Ud 0h | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.22968419740909e-269!GO:0005737;cytoplasm;1.33021936698974e-172!GO:0044444;cytoplasmic part;1.8192923855393e-145!GO:0043227;membrane-bound organelle;5.68748843637908e-121!GO:0043231;intracellular membrane-bound organelle;1.34252783400477e-120!GO:0043226;organelle;1.04482825598856e-108!GO:0043229;intracellular organelle;4.54808577609293e-108!GO:0044422;organelle part;1.52749453188551e-100!GO:0044446;intracellular organelle part;1.21775593919992e-98!GO:0032991;macromolecular complex;3.06260678397386e-76!GO:0005739;mitochondrion;1.36593288600797e-72!GO:0044237;cellular metabolic process;1.92183920033039e-66!GO:0030529;ribonucleoprotein complex;1.70589615183346e-64!GO:0044238;primary metabolic process;2.53090756998763e-62!GO:0031090;organelle membrane;2.48051166399096e-60!GO:0009058;biosynthetic process;5.48337253669044e-54!GO:0003723;RNA binding;1.32013354990201e-50!GO:0006412;translation;2.00043051172355e-49!GO:0044429;mitochondrial part;2.00829556788959e-49!GO:0019538;protein metabolic process;7.48340192744638e-49!GO:0043170;macromolecule metabolic process;3.32560551571744e-48!GO:0043233;organelle lumen;2.08482570170385e-47!GO:0031974;membrane-enclosed lumen;2.08482570170385e-47!GO:0044249;cellular biosynthetic process;3.2089719082724e-47!GO:0005515;protein binding;1.17675344639228e-46!GO:0044260;cellular macromolecule metabolic process;5.61476282520485e-46!GO:0044267;cellular protein metabolic process;5.96413121143444e-45!GO:0009059;macromolecule biosynthetic process;1.50708906000638e-44!GO:0005840;ribosome;1.62386277841905e-42!GO:0031967;organelle envelope;4.42301459910859e-42!GO:0033036;macromolecule localization;6.81408427713238e-42!GO:0031975;envelope;9.42743905097157e-42!GO:0015031;protein transport;3.73506194150419e-41!GO:0045184;establishment of protein localization;5.3256884759299e-41!GO:0044428;nuclear part;5.3256884759299e-41!GO:0008104;protein localization;6.15258597837067e-40!GO:0043234;protein complex;8.37055246360202e-40!GO:0005829;cytosol;8.45919393401761e-39!GO:0003735;structural constituent of ribosome;1.16608048636067e-37!GO:0033279;ribosomal subunit;8.50618710291952e-34!GO:0005740;mitochondrial envelope;2.58980930143055e-33!GO:0031966;mitochondrial membrane;2.26273276302501e-31!GO:0006396;RNA processing;3.58491194957345e-31!GO:0019866;organelle inner membrane;7.35927827027071e-30!GO:0005743;mitochondrial inner membrane;5.93174512712264e-28!GO:0006886;intracellular protein transport;1.87723565795788e-27!GO:0046907;intracellular transport;2.30576411208467e-27!GO:0006119;oxidative phosphorylation;4.72880932625354e-27!GO:0016071;mRNA metabolic process;2.74551538610776e-26!GO:0016043;cellular component organization and biogenesis;1.96869110017769e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.50563828180881e-25!GO:0065003;macromolecular complex assembly;6.02980525216572e-24!GO:0051186;cofactor metabolic process;4.40007126295648e-23!GO:0008380;RNA splicing;7.06023529869518e-23!GO:0031981;nuclear lumen;7.06023529869518e-23!GO:0006397;mRNA processing;1.96462489524184e-22!GO:0005773;vacuole;2.34390772962041e-22!GO:0012505;endomembrane system;3.1742170665369e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.20423738037335e-22!GO:0044445;cytosolic part;5.80990972069725e-22!GO:0051649;establishment of cellular localization;1.26353807364705e-21!GO:0048770;pigment granule;2.6406050361489e-21!GO:0042470;melanosome;2.6406050361489e-21!GO:0051641;cellular localization;3.72554089715988e-21!GO:0044455;mitochondrial membrane part;4.20384674919796e-21!GO:0000323;lytic vacuole;5.66687756398721e-21!GO:0005764;lysosome;5.66687756398721e-21!GO:0005634;nucleus;5.94255040769173e-21!GO:0022607;cellular component assembly;1.16769639657139e-20!GO:0006915;apoptosis;2.20105283758466e-20!GO:0012501;programmed cell death;2.28200814444275e-20!GO:0044248;cellular catabolic process;1.44579320107812e-19!GO:0031980;mitochondrial lumen;2.7313961594222e-19!GO:0005759;mitochondrial matrix;2.7313961594222e-19!GO:0008219;cell death;4.75572606808091e-19!GO:0016265;death;4.75572606808091e-19!GO:0005783;endoplasmic reticulum;5.20388076568762e-19!GO:0015935;small ribosomal subunit;8.01037633066601e-19!GO:0006732;coenzyme metabolic process;1.9100665370887e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.60117655527473e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;4.29915436882441e-18!GO:0016462;pyrophosphatase activity;4.88477282508437e-18!GO:0005746;mitochondrial respiratory chain;5.3945473813997e-18!GO:0005681;spliceosome;5.81264690932046e-18!GO:0044265;cellular macromolecule catabolic process;3.65139013913043e-17!GO:0044432;endoplasmic reticulum part;4.70496412020249e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.24218259873683e-17!GO:0017111;nucleoside-triphosphatase activity;9.88589188102164e-17!GO:0016192;vesicle-mediated transport;1.25557695867331e-16!GO:0015934;large ribosomal subunit;3.9441092435429e-16!GO:0022618;protein-RNA complex assembly;3.95719562415389e-16!GO:0050136;NADH dehydrogenase (quinone) activity;4.03397641469209e-16!GO:0003954;NADH dehydrogenase activity;4.03397641469209e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.03397641469209e-16!GO:0005794;Golgi apparatus;9.15723386112898e-16!GO:0009057;macromolecule catabolic process;1.54845474799992e-15!GO:0043283;biopolymer metabolic process;4.82330662951571e-15!GO:0016787;hydrolase activity;7.03793648342636e-15!GO:0043285;biopolymer catabolic process;7.44492485434291e-15!GO:0006996;organelle organization and biogenesis;7.46675883828805e-15!GO:0006605;protein targeting;7.63820974391934e-15!GO:0000166;nucleotide binding;9.48352758045596e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.06488021612717e-14!GO:0005654;nucleoplasm;1.77197769592736e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.98565869840081e-14!GO:0042773;ATP synthesis coupled electron transport;1.98565869840081e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.04071873552715e-14!GO:0045271;respiratory chain complex I;2.04071873552715e-14!GO:0005747;mitochondrial respiratory chain complex I;2.04071873552715e-14!GO:0016874;ligase activity;2.93533491092133e-14!GO:0000502;proteasome complex (sensu Eukaryota);3.54806262722186e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.12803572939445e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.56474708484309e-14!GO:0005789;endoplasmic reticulum membrane;6.03754715175864e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.7669890975795e-14!GO:0009056;catabolic process;7.92854497293846e-14!GO:0006457;protein folding;1.0389534390096e-13!GO:0010467;gene expression;1.32915691058626e-13!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.38221303150168e-13!GO:0051188;cofactor biosynthetic process;4.38633373896085e-13!GO:0008134;transcription factor binding;6.90030758355747e-13!GO:0009259;ribonucleotide metabolic process;8.37926488369119e-13!GO:0009150;purine ribonucleotide metabolic process;8.4280848752557e-13!GO:0009055;electron carrier activity;1.19164249467449e-12!GO:0006512;ubiquitin cycle;1.41319283118302e-12!GO:0019829;cation-transporting ATPase activity;2.08187826928419e-12!GO:0006163;purine nucleotide metabolic process;2.09888792900245e-12!GO:0009152;purine ribonucleotide biosynthetic process;2.32901114897641e-12!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.54953105311002e-12!GO:0005761;mitochondrial ribosome;3.75794890840091e-12!GO:0000313;organellar ribosome;3.75794890840091e-12!GO:0015078;hydrogen ion transmembrane transporter activity;3.81766821536125e-12!GO:0042981;regulation of apoptosis;3.81766821536125e-12!GO:0009260;ribonucleotide biosynthetic process;5.59839564603261e-12!GO:0043067;regulation of programmed cell death;5.92813081721622e-12!GO:0006164;purine nucleotide biosynthetic process;6.52260290855687e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.66239414797878e-12!GO:0015986;ATP synthesis coupled proton transport;9.70005288778464e-12!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.70005288778464e-12!GO:0016491;oxidoreductase activity;9.70543158077918e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;9.88296080103629e-12!GO:0044257;cellular protein catabolic process;1.10365816785188e-11!GO:0006413;translational initiation;1.58956213128147e-11!GO:0019941;modification-dependent protein catabolic process;1.69353958439692e-11!GO:0043632;modification-dependent macromolecule catabolic process;1.69353958439692e-11!GO:0008135;translation factor activity, nucleic acid binding;1.97860044572807e-11!GO:0017076;purine nucleotide binding;2.67899695350043e-11!GO:0006511;ubiquitin-dependent protein catabolic process;3.32892720573337e-11!GO:0042623;ATPase activity, coupled;3.37027796431321e-11!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.59245983610723e-11!GO:0032553;ribonucleotide binding;4.8485819261526e-11!GO:0032555;purine ribonucleotide binding;4.8485819261526e-11!GO:0044451;nucleoplasm part;5.99288356048629e-11!GO:0005768;endosome;6.32655745702978e-11!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.44008404371199e-11!GO:0043412;biopolymer modification;6.54064425765842e-11!GO:0030163;protein catabolic process;6.59391528923527e-11!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.02211195472009e-11!GO:0009144;purine nucleoside triphosphate metabolic process;7.02211195472009e-11!GO:0009199;ribonucleoside triphosphate metabolic process;7.49774706176284e-11!GO:0016887;ATPase activity;7.73412189751449e-11!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.00620318670937e-11!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.00620318670937e-11!GO:0009142;nucleoside triphosphate biosynthetic process;8.97122306578019e-11!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.97122306578019e-11!GO:0005730;nucleolus;1.30597002668375e-10!GO:0016469;proton-transporting two-sector ATPase complex;1.30597002668375e-10!GO:0009108;coenzyme biosynthetic process;1.36417398370294e-10!GO:0009141;nucleoside triphosphate metabolic process;1.49752883072312e-10!GO:0006754;ATP biosynthetic process;1.81432048701243e-10!GO:0006753;nucleoside phosphate metabolic process;1.81432048701243e-10!GO:0048193;Golgi vesicle transport;2.06733160228384e-10!GO:0006446;regulation of translational initiation;2.18907405539312e-10!GO:0051082;unfolded protein binding;2.20759539485542e-10!GO:0046034;ATP metabolic process;2.64106871472327e-10!GO:0003743;translation initiation factor activity;2.79655161750886e-10!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.95991207737915e-10!GO:0006464;protein modification process;3.54853963199986e-10!GO:0005774;vacuolar membrane;3.5896171287844e-10!GO:0009117;nucleotide metabolic process;5.11458481113939e-10!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.52452865982369e-10!GO:0006950;response to stress;5.52452865982369e-10!GO:0005635;nuclear envelope;6.16388241010333e-10!GO:0006259;DNA metabolic process;6.21005965976176e-10!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.73487896610934e-10!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.83914443337447e-10!GO:0006091;generation of precursor metabolites and energy;1.20527826353902e-09!GO:0009615;response to virus;1.23396132645646e-09!GO:0006913;nucleocytoplasmic transport;1.32051936891929e-09!GO:0051246;regulation of protein metabolic process;1.46427115857066e-09!GO:0005770;late endosome;1.81670557488986e-09!GO:0044437;vacuolar part;1.99103413066381e-09!GO:0007243;protein kinase cascade;2.02330503841669e-09!GO:0005765;lysosomal membrane;2.09123842100175e-09!GO:0051169;nuclear transport;2.52214476132532e-09!GO:0009060;aerobic respiration;3.0352198664834e-09!GO:0044262;cellular carbohydrate metabolic process;5.21444604910599e-09!GO:0043069;negative regulation of programmed cell death;7.0911666541864e-09!GO:0043066;negative regulation of apoptosis;8.82274097686097e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.09768222986265e-08!GO:0000375;RNA splicing, via transesterification reactions;1.09768222986265e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.09768222986265e-08!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.34451623063167e-08!GO:0015399;primary active transmembrane transporter activity;1.34451623063167e-08!GO:0017038;protein import;1.38603759749638e-08!GO:0008565;protein transporter activity;1.5327706129164e-08!GO:0005793;ER-Golgi intermediate compartment;2.23116426491755e-08!GO:0016604;nuclear body;2.23750826412853e-08!GO:0008639;small protein conjugating enzyme activity;2.65180998786686e-08!GO:0030554;adenyl nucleotide binding;2.67286937122274e-08!GO:0044255;cellular lipid metabolic process;2.97575872375162e-08!GO:0006916;anti-apoptosis;3.39228395672945e-08!GO:0032559;adenyl ribonucleotide binding;3.74202793538093e-08!GO:0043228;non-membrane-bound organelle;4.05430442662685e-08!GO:0043232;intracellular non-membrane-bound organelle;4.05430442662685e-08!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.09090732742668e-08!GO:0005524;ATP binding;4.33136480323285e-08!GO:0045333;cellular respiration;5.43912291052931e-08!GO:0006752;group transfer coenzyme metabolic process;5.60333233922812e-08!GO:0043687;post-translational protein modification;5.80672450352466e-08!GO:0004842;ubiquitin-protein ligase activity;6.47071154568671e-08!GO:0006461;protein complex assembly;1.05197680035144e-07!GO:0019787;small conjugating protein ligase activity;1.05894065207088e-07!GO:0044440;endosomal part;1.51962018606629e-07!GO:0010008;endosome membrane;1.51962018606629e-07!GO:0003712;transcription cofactor activity;1.82126339890933e-07!GO:0008654;phospholipid biosynthetic process;2.1176634750875e-07!GO:0042254;ribosome biogenesis and assembly;2.21712898277641e-07!GO:0044453;nuclear membrane part;2.22691441211621e-07!GO:0043492;ATPase activity, coupled to movement of substances;2.37239003462827e-07!GO:0031965;nuclear membrane;2.37468199944966e-07!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;2.45552654257094e-07!GO:0006818;hydrogen transport;2.69414923713853e-07!GO:0006099;tricarboxylic acid cycle;3.21584767337656e-07!GO:0046356;acetyl-CoA catabolic process;3.21584767337656e-07!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;3.38089317618154e-07!GO:0031982;vesicle;3.6369262110822e-07!GO:0015992;proton transport;4.1043449104363e-07!GO:0051187;cofactor catabolic process;4.336296822948e-07!GO:0006084;acetyl-CoA metabolic process;5.53395847018192e-07!GO:0006629;lipid metabolic process;5.62621687888984e-07!GO:0022890;inorganic cation transmembrane transporter activity;5.71226710968794e-07!GO:0009165;nucleotide biosynthetic process;6.85128788539668e-07!GO:0008610;lipid biosynthetic process;7.20252877271785e-07!GO:0044431;Golgi apparatus part;8.19182177260839e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.03851945170647e-06!GO:0006417;regulation of translation;1.1152337114475e-06!GO:0019752;carboxylic acid metabolic process;1.1152337114475e-06!GO:0006082;organic acid metabolic process;1.15618825437865e-06!GO:0031988;membrane-bound vesicle;1.18655701849772e-06!GO:0016607;nuclear speck;1.23510693747706e-06!GO:0007040;lysosome organization and biogenesis;1.23510693747706e-06!GO:0065009;regulation of a molecular function;1.26604530435616e-06!GO:0005975;carbohydrate metabolic process;1.26749029819993e-06!GO:0045259;proton-transporting ATP synthase complex;1.56444122259208e-06!GO:0006793;phosphorus metabolic process;1.87782739262281e-06!GO:0006796;phosphate metabolic process;1.87782739262281e-06!GO:0016044;membrane organization and biogenesis;1.88541321123314e-06!GO:0031410;cytoplasmic vesicle;1.91687232201174e-06!GO:0009109;coenzyme catabolic process;2.35204719053332e-06!GO:0007242;intracellular signaling cascade;2.35790325155846e-06!GO:0008026;ATP-dependent helicase activity;2.37204029627302e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.46025327062843e-06!GO:0016881;acid-amino acid ligase activity;3.17607068803085e-06!GO:0007033;vacuole organization and biogenesis;3.79099977412013e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.04607685028073e-06!GO:0048475;coated membrane;4.12352191136522e-06!GO:0030117;membrane coat;4.12352191136522e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.12372679459568e-06!GO:0006399;tRNA metabolic process;4.1432191571253e-06!GO:0048523;negative regulation of cellular process;4.45104695339228e-06!GO:0016310;phosphorylation;4.46715089368286e-06!GO:0006643;membrane lipid metabolic process;4.48089148083804e-06!GO:0051170;nuclear import;4.52841812986017e-06!GO:0030120;vesicle coat;4.52841812986017e-06!GO:0030662;coated vesicle membrane;4.52841812986017e-06!GO:0007005;mitochondrion organization and biogenesis;4.5477567504014e-06!GO:0065002;intracellular protein transport across a membrane;4.79571079748572e-06!GO:0004298;threonine endopeptidase activity;5.19058818587746e-06!GO:0009967;positive regulation of signal transduction;5.87632877490455e-06!GO:0016740;transferase activity;7.57593696978478e-06!GO:0006606;protein import into nucleus;7.59290308202698e-06!GO:0005643;nuclear pore;9.17586893546078e-06!GO:0031902;late endosome membrane;9.24244773289516e-06!GO:0030532;small nuclear ribonucleoprotein complex;9.68196237209907e-06!GO:0009889;regulation of biosynthetic process;1.24572113803037e-05!GO:0002376;immune system process;1.53530969371661e-05!GO:0048519;negative regulation of biological process;1.62556257493937e-05!GO:0031326;regulation of cellular biosynthetic process;1.65313008488573e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.7402995398223e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;1.79388510969599e-05!GO:0000139;Golgi membrane;1.84156179527675e-05!GO:0046930;pore complex;2.25483366161142e-05!GO:0004386;helicase activity;2.60775320640122e-05!GO:0016072;rRNA metabolic process;2.65704476491123e-05!GO:0006974;response to DNA damage stimulus;2.85395905561563e-05!GO:0046519;sphingoid metabolic process;2.92882706809135e-05!GO:0005525;GTP binding;3.46843791219347e-05!GO:0006364;rRNA processing;3.55583085097531e-05!GO:0032446;protein modification by small protein conjugation;3.85476862684833e-05!GO:0016567;protein ubiquitination;3.93634350895078e-05!GO:0006672;ceramide metabolic process;3.97828916024531e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.07552796357139e-05!GO:0004812;aminoacyl-tRNA ligase activity;4.07552796357139e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.07552796357139e-05!GO:0006323;DNA packaging;4.86849600363136e-05!GO:0046474;glycerophospholipid biosynthetic process;5.10350261106452e-05!GO:0009607;response to biotic stimulus;5.1938909061904e-05!GO:0043065;positive regulation of apoptosis;5.25369444302559e-05!GO:0003924;GTPase activity;5.58918742939926e-05!GO:0006650;glycerophospholipid metabolic process;5.81211195699288e-05!GO:0050657;nucleic acid transport;6.50261874848628e-05!GO:0051236;establishment of RNA localization;6.50261874848628e-05!GO:0050658;RNA transport;6.50261874848628e-05!GO:0043068;positive regulation of programmed cell death;6.86282464428857e-05!GO:0031252;leading edge;7.02445136171002e-05!GO:0046467;membrane lipid biosynthetic process;7.07890443220003e-05!GO:0051726;regulation of cell cycle;7.64992933525464e-05!GO:0043038;amino acid activation;7.67587193862522e-05!GO:0006418;tRNA aminoacylation for protein translation;7.67587193862522e-05!GO:0043039;tRNA aminoacylation;7.67587193862522e-05!GO:0045454;cell redox homeostasis;7.92895203901018e-05!GO:0008047;enzyme activator activity;7.92895203901018e-05!GO:0000074;regulation of progression through cell cycle;8.95010108713727e-05!GO:0006403;RNA localization;0.000100785473981572!GO:0005798;Golgi-associated vesicle;0.00010889056524184!GO:0006644;phospholipid metabolic process;0.000109462280707711!GO:0048522;positive regulation of cellular process;0.000129570420472033!GO:0006613;cotranslational protein targeting to membrane;0.000129710533285907!GO:0000151;ubiquitin ligase complex;0.000129948975959539!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000134300380332442!GO:0006118;electron transport;0.00013520811938921!GO:0007049;cell cycle;0.000150475130109994!GO:0006955;immune response;0.000151647035049956!GO:0050790;regulation of catalytic activity;0.000162146671980155!GO:0019318;hexose metabolic process;0.000168861648081763!GO:0005769;early endosome;0.000175170839529228!GO:0019867;outer membrane;0.000191283113332573!GO:0019899;enzyme binding;0.00019547947009432!GO:0006333;chromatin assembly or disassembly;0.000206484685518855!GO:0003713;transcription coactivator activity;0.00021830117676092!GO:0005762;mitochondrial large ribosomal subunit;0.000225089147590268!GO:0000315;organellar large ribosomal subunit;0.000225089147590268!GO:0006733;oxidoreduction coenzyme metabolic process;0.000228995514174324!GO:0005996;monosaccharide metabolic process;0.000238121998919563!GO:0005885;Arp2/3 protein complex;0.000245449423079913!GO:0006767;water-soluble vitamin metabolic process;0.000263127133290838!GO:0031968;organelle outer membrane;0.000271310381914624!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000282388651069362!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000285673244936312!GO:0032940;secretion by cell;0.000285848841363029!GO:0003724;RNA helicase activity;0.000292578084514725!GO:0003697;single-stranded DNA binding;0.000296003500329548!GO:0006897;endocytosis;0.000311742213208232!GO:0010324;membrane invagination;0.000311742213208232!GO:0007034;vacuolar transport;0.000318115443619288!GO:0032561;guanyl ribonucleotide binding;0.000324695938888152!GO:0019001;guanyl nucleotide binding;0.000324695938888152!GO:0006917;induction of apoptosis;0.000333118267218004!GO:0015980;energy derivation by oxidation of organic compounds;0.000334262001584088!GO:0016197;endosome transport;0.000334262001584088!GO:0000245;spliceosome assembly;0.000337972946184859!GO:0006066;alcohol metabolic process;0.000345603405574361!GO:0009719;response to endogenous stimulus;0.000356429195443781!GO:0065004;protein-DNA complex assembly;0.000358793785320013!GO:0008632;apoptotic program;0.000360261882125051!GO:0048518;positive regulation of biological process;0.000361226155981214!GO:0005741;mitochondrial outer membrane;0.000400566386756948!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000404938576998587!GO:0051276;chromosome organization and biogenesis;0.000405360342711096!GO:0000314;organellar small ribosomal subunit;0.000409619663403625!GO:0005763;mitochondrial small ribosomal subunit;0.000409619663403625!GO:0030149;sphingolipid catabolic process;0.000429304222808063!GO:0006281;DNA repair;0.0004324533213282!GO:0007264;small GTPase mediated signal transduction;0.000434162063994098!GO:0012502;induction of programmed cell death;0.000450360392616143!GO:0033116;ER-Golgi intermediate compartment membrane;0.000450360392616143!GO:0032787;monocarboxylic acid metabolic process;0.000472027048907702!GO:0019843;rRNA binding;0.000525673132727365!GO:0005788;endoplasmic reticulum lumen;0.000537519662229201!GO:0006612;protein targeting to membrane;0.00057212648993862!GO:0043566;structure-specific DNA binding;0.000604648852651713!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000615962824137297!GO:0051028;mRNA transport;0.000632549642706004!GO:0006954;inflammatory response;0.000632549642706004!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.000677322293651289!GO:0046489;phosphoinositide biosynthetic process;0.00072103929732046!GO:0043623;cellular protein complex assembly;0.000770002175149393!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00081015120921271!GO:0016853;isomerase activity;0.00094734933241294!GO:0030176;integral to endoplasmic reticulum membrane;0.000954494896782335!GO:0001726;ruffle;0.000973324780358422!GO:0051427;hormone receptor binding;0.000987261883480886!GO:0007006;mitochondrial membrane organization and biogenesis;0.000993305209447953!GO:0003714;transcription corepressor activity;0.00103254464261422!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00116871831802635!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00116871831802635!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00116871831802635!GO:0046483;heterocycle metabolic process;0.00124343469760176!GO:0000785;chromatin;0.00127194385372697!GO:0006778;porphyrin metabolic process;0.00128368726685282!GO:0033013;tetrapyrrole metabolic process;0.00128368726685282!GO:0045786;negative regulation of progression through cell cycle;0.00128871704630893!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00131360805893766!GO:0016564;transcription repressor activity;0.00135241704389388!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00138585017199791!GO:0006807;nitrogen compound metabolic process;0.00141470725562649!GO:0006366;transcription from RNA polymerase II promoter;0.00144434511704674!GO:0016779;nucleotidyltransferase activity;0.00147442924118533!GO:0019377;glycolipid catabolic process;0.00154040645723811!GO:0005096;GTPase activator activity;0.00156387544894216!GO:0045045;secretory pathway;0.0015782982223781!GO:0051336;regulation of hydrolase activity;0.00158739974972374!GO:0030384;phosphoinositide metabolic process;0.00159694070219277!GO:0016568;chromatin modification;0.00160904448171039!GO:0031497;chromatin assembly;0.0016109279968127!GO:0019362;pyridine nucleotide metabolic process;0.00162540232861181!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00163433847565161!GO:0048468;cell development;0.00167731608706266!GO:0050662;coenzyme binding;0.00168507983405652!GO:0035257;nuclear hormone receptor binding;0.00172411819919219!GO:0004197;cysteine-type endopeptidase activity;0.0017421248703667!GO:0006334;nucleosome assembly;0.00181335327617245!GO:0006979;response to oxidative stress;0.00183695310677146!GO:0004177;aminopeptidase activity;0.00184126625198803!GO:0022415;viral reproductive process;0.0019499231329953!GO:0006631;fatty acid metabolic process;0.0020924273737932!GO:0006401;RNA catabolic process;0.00213342845113768!GO:0008186;RNA-dependent ATPase activity;0.00223742235349341!GO:0043681;protein import into mitochondrion;0.00227393556392845!GO:0006516;glycoprotein catabolic process;0.00231511591541056!GO:0007041;lysosomal transport;0.0026620855305646!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00268375090432367!GO:0051789;response to protein stimulus;0.0028224354273886!GO:0006986;response to unfolded protein;0.0028224354273886!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00284200636133529!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00284200636133529!GO:0043021;ribonucleoprotein binding;0.00318192368928128!GO:0006006;glucose metabolic process;0.00323087219538696!GO:0015036;disulfide oxidoreductase activity;0.00339894115638854!GO:0051920;peroxiredoxin activity;0.00352857826632733!GO:0000287;magnesium ion binding;0.00354880497199139!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00378779445785443!GO:0015002;heme-copper terminal oxidase activity;0.00378779445785443!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00378779445785443!GO:0004129;cytochrome-c oxidase activity;0.00378779445785443!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00379456090794593!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00390804260374489!GO:0003725;double-stranded RNA binding;0.00416643895834866!GO:0003676;nucleic acid binding;0.00416643895834866!GO:0042168;heme metabolic process;0.00417889491363916!GO:0030867;rough endoplasmic reticulum membrane;0.00423818604016396!GO:0006414;translational elongation;0.00425082430885313!GO:0046466;membrane lipid catabolic process;0.0044346440064876!GO:0030658;transport vesicle membrane;0.00448333123429771!GO:0022402;cell cycle process;0.00448333123429771!GO:0006769;nicotinamide metabolic process;0.00468149930119362!GO:0046479;glycosphingolipid catabolic process;0.00469634242546912!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0047026988052747!GO:0003729;mRNA binding;0.00474992171357384!GO:0051168;nuclear export;0.00477568354738354!GO:0051707;response to other organism;0.00482059162578743!GO:0005048;signal sequence binding;0.00482584827061661!GO:0006383;transcription from RNA polymerase III promoter;0.0049106783625278!GO:0006626;protein targeting to mitochondrion;0.00512238128428477!GO:0006665;sphingolipid metabolic process;0.00520773204959645!GO:0008234;cysteine-type peptidase activity;0.00522854240798016!GO:0016126;sterol biosynthetic process;0.00525531620990471!GO:0030118;clathrin coat;0.00538006480280301!GO:0004004;ATP-dependent RNA helicase activity;0.00544524248475627!GO:0016798;hydrolase activity, acting on glycosyl bonds;0.00555192127634908!GO:0005694;chromosome;0.00589253580813751!GO:0044275;cellular carbohydrate catabolic process;0.0061237150567704!GO:0006509;membrane protein ectodomain proteolysis;0.00627743802251938!GO:0033619;membrane protein proteolysis;0.00627743802251938!GO:0006635;fatty acid beta-oxidation;0.00651017285040747!GO:0009110;vitamin biosynthetic process;0.00662686104811282!GO:0006779;porphyrin biosynthetic process;0.00671030438583332!GO:0033014;tetrapyrrole biosynthetic process;0.00671030438583332!GO:0016125;sterol metabolic process;0.00700191880439416!GO:0006633;fatty acid biosynthetic process;0.00706461253791068!GO:0004185;serine carboxypeptidase activity;0.00715038059983101!GO:0006891;intra-Golgi vesicle-mediated transport;0.00754216540219083!GO:0004553;hydrolase activity, hydrolyzing O-glycosyl compounds;0.00759746638693541!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00759746638693541!GO:0051287;NAD binding;0.0079717939852445!GO:0030984;kininogen binding;0.00807995834201973!GO:0004213;cathepsin B activity;0.00807995834201973!GO:0048002;antigen processing and presentation of peptide antigen;0.00808147531670042!GO:0009308;amine metabolic process;0.00811688217843169!GO:0030145;manganese ion binding;0.00819284840957158!GO:0048037;cofactor binding;0.00819284840957158!GO:0006007;glucose catabolic process;0.00829265402268664!GO:0006740;NADPH regeneration;0.00832349847842765!GO:0006098;pentose-phosphate shunt;0.00832349847842765!GO:0030041;actin filament polymerization;0.00840462954320464!GO:0006749;glutathione metabolic process;0.00841181650165151!GO:0050749;apolipoprotein E receptor binding;0.00948326465535632!GO:0017166;vinculin binding;0.00961685521425289!GO:0046822;regulation of nucleocytoplasmic transport;0.0096748430488757!GO:0042987;amyloid precursor protein catabolic process;0.00969208538247567!GO:0005777;peroxisome;0.0097872081525374!GO:0042579;microbody;0.0097872081525374!GO:0006402;mRNA catabolic process;0.00994185755988735!GO:0030660;Golgi-associated vesicle membrane;0.0100039037417906!GO:0051252;regulation of RNA metabolic process;0.0100073688578704!GO:0019079;viral genome replication;0.0100804081870207!GO:0044438;microbody part;0.0105734692377145!GO:0044439;peroxisomal part;0.0105734692377145!GO:0043488;regulation of mRNA stability;0.0107177470327074!GO:0043487;regulation of RNA stability;0.0107177470327074!GO:0000786;nucleosome;0.0110441511241591!GO:0030133;transport vesicle;0.0111678713488088!GO:0006839;mitochondrial transport;0.0112764619317941!GO:0042158;lipoprotein biosynthetic process;0.011530014225712!GO:0008637;apoptotic mitochondrial changes;0.0115550906174687!GO:0030027;lamellipodium;0.0118286665327417!GO:0042364;water-soluble vitamin biosynthetic process;0.011961343214979!GO:0005791;rough endoplasmic reticulum;0.011961343214979!GO:0004192;cathepsin D activity;0.0121580316094312!GO:0006497;protein amino acid lipidation;0.0123311078609886!GO:0046394;carboxylic acid biosynthetic process;0.0125166061713446!GO:0016053;organic acid biosynthetic process;0.0125166061713446!GO:0046456;icosanoid biosynthetic process;0.0125166061713446!GO:0019058;viral infectious cycle;0.0128962980299337!GO:0007265;Ras protein signal transduction;0.0131534630829979!GO:0005905;coated pit;0.0131734299675051!GO:0008139;nuclear localization sequence binding;0.0132150230477436!GO:0044427;chromosomal part;0.0135651985852185!GO:0030134;ER to Golgi transport vesicle;0.0136116666918205!GO:0000096;sulfur amino acid metabolic process;0.0137411254788272!GO:0030880;RNA polymerase complex;0.0141608989289107!GO:0005758;mitochondrial intermembrane space;0.0144044917352054!GO:0002252;immune effector process;0.0144622964372355!GO:0006506;GPI anchor biosynthetic process;0.0144676168913049!GO:0051540;metal cluster binding;0.0148075761268276!GO:0051536;iron-sulfur cluster binding;0.0148075761268276!GO:0016860;intramolecular oxidoreductase activity;0.0150884726878392!GO:0031903;microbody membrane;0.0150884726878392!GO:0005778;peroxisomal membrane;0.0150884726878392!GO:0009100;glycoprotein metabolic process;0.0150884726878392!GO:0043087;regulation of GTPase activity;0.0152409658470042!GO:0006595;polyamine metabolic process;0.0152729954450348!GO:0006518;peptide metabolic process;0.015395592789815!GO:0030503;regulation of cell redox homeostasis;0.0155594857249689!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0160945440913734!GO:0006766;vitamin metabolic process;0.0163486587064361!GO:0006689;ganglioside catabolic process;0.0163571900828965!GO:0035035;histone acetyltransferase binding;0.0166385633197282!GO:0016563;transcription activator activity;0.0166519517855417!GO:0042613;MHC class II protein complex;0.016820530005531!GO:0043284;biopolymer biosynthetic process;0.01755399548118!GO:0006790;sulfur metabolic process;0.0179780531134897!GO:0008320;protein transmembrane transporter activity;0.0179780531134897!GO:0006607;NLS-bearing substrate import into nucleus;0.0179780531134897!GO:0031301;integral to organelle membrane;0.0179780531134897!GO:0051452;cellular pH reduction;0.0179780531134897!GO:0051453;regulation of cellular pH;0.0179780531134897!GO:0045851;pH reduction;0.0179780531134897!GO:0030132;clathrin coat of coated pit;0.0180449342677934!GO:0030663;COPI coated vesicle membrane;0.018058336690099!GO:0030126;COPI vesicle coat;0.018058336690099!GO:0030127;COPII vesicle coat;0.0184114361628587!GO:0012507;ER to Golgi transport vesicle membrane;0.0184114361628587!GO:0006914;autophagy;0.0184363082901676!GO:0006458;'de novo' protein folding;0.0188734978557562!GO:0051084;'de novo' posttranslational protein folding;0.0188734978557562!GO:0051090;regulation of transcription factor activity;0.0191441553631419!GO:0004229;gelatinase B activity;0.0193772921865567!GO:0030119;AP-type membrane coat adaptor complex;0.0194338836404057!GO:0048487;beta-tubulin binding;0.0195014452530419!GO:0042802;identical protein binding;0.0195931080938632!GO:0006739;NADP metabolic process;0.0196411760267624!GO:0005637;nuclear inner membrane;0.0196411760267624!GO:0031072;heat shock protein binding;0.0196703943564904!GO:0005684;U2-dependent spliceosome;0.0204481891384219!GO:0001516;prostaglandin biosynthetic process;0.0208881251628377!GO:0046457;prostanoid biosynthetic process;0.0208881251628377!GO:0031901;early endosome membrane;0.0208881251628377!GO:0006783;heme biosynthetic process;0.0210308877441169!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0210308877441169!GO:0010257;NADH dehydrogenase complex assembly;0.0210308877441169!GO:0033108;mitochondrial respiratory chain complex assembly;0.0210308877441169!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0210308877441169!GO:0031970;organelle envelope lumen;0.0215699406739958!GO:0003711;transcription elongation regulator activity;0.0220422438382655!GO:0003899;DNA-directed RNA polymerase activity;0.0220422438382655!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0224110603315235!GO:0018193;peptidyl-amino acid modification;0.0224610074477029!GO:0015248;sterol transporter activity;0.0224644066339723!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0226258660907718!GO:0048500;signal recognition particle;0.023194378818799!GO:0006013;mannose metabolic process;0.0233646412739317!GO:0051087;chaperone binding;0.0236801912266321!GO:0032428;beta-N-acetylgalactosaminidase activity;0.0237920702445575!GO:0030290;sphingolipid activator protein activity;0.0237920702445575!GO:0030036;actin cytoskeleton organization and biogenesis;0.0237920702445575!GO:0009966;regulation of signal transduction;0.0246773576983269!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0246901602223656!GO:0033033;negative regulation of myeloid cell apoptosis;0.0246901602223656!GO:0001803;regulation of type III hypersensitivity;0.0246901602223656!GO:0032733;positive regulation of interleukin-10 production;0.0246901602223656!GO:0033025;regulation of mast cell apoptosis;0.0246901602223656!GO:0001805;positive regulation of type III hypersensitivity;0.0246901602223656!GO:0033023;mast cell homeostasis;0.0246901602223656!GO:0002431;Fc receptor mediated stimulatory signaling pathway;0.0246901602223656!GO:0033032;regulation of myeloid cell apoptosis;0.0246901602223656!GO:0001802;type III hypersensitivity;0.0246901602223656!GO:0033028;myeloid cell apoptosis;0.0246901602223656!GO:0042590;antigen processing and presentation of exogenous peptide antigen via MHC class I;0.0246901602223656!GO:0033026;negative regulation of mast cell apoptosis;0.0246901602223656!GO:0033024;mast cell apoptosis;0.0246901602223656!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0246901602223656!GO:0008624;induction of apoptosis by extracellular signals;0.0251373208279604!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0257058520163498!GO:0000428;DNA-directed RNA polymerase complex;0.0257058520163498!GO:0019904;protein domain specific binding;0.0258299398703506!GO:0008033;tRNA processing;0.0260414737695845!GO:0030131;clathrin adaptor complex;0.0260654664647071!GO:0008250;oligosaccharyl transferase complex;0.0265804570707195!GO:0008203;cholesterol metabolic process;0.0268124070979265!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0269423514722488!GO:0006695;cholesterol biosynthetic process;0.027197720383391!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0274058045282573!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0274058045282573!GO:0009126;purine nucleoside monophosphate metabolic process;0.0274058045282573!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0274058045282573!GO:0030137;COPI-coated vesicle;0.0274058045282573!GO:0048471;perinuclear region of cytoplasm;0.0283072204490356!GO:0000209;protein polyubiquitination;0.0283951610395116!GO:0043281;regulation of caspase activity;0.0285427005341712!GO:0007050;cell cycle arrest;0.0293492772533935!GO:0030125;clathrin vesicle coat;0.0293492772533935!GO:0030665;clathrin coated vesicle membrane;0.0293492772533935!GO:0005869;dynactin complex;0.0294206493364489!GO:0004576;oligosaccharyl transferase activity;0.0294330727358695!GO:0050811;GABA receptor binding;0.0297640986323749!GO:0005667;transcription factor complex;0.0298137570059084!GO:0030099;myeloid cell differentiation;0.0298137570059084!GO:0046983;protein dimerization activity;0.0306390884992427!GO:0004448;isocitrate dehydrogenase activity;0.0309689239559469!GO:0051092;activation of NF-kappaB transcription factor;0.031392571739888!GO:0000303;response to superoxide;0.0314255130167124!GO:0006611;protein export from nucleus;0.0317486138698306!GO:0000305;response to oxygen radical;0.0320890605192925!GO:0016408;C-acyltransferase activity;0.0320890605192925!GO:0051235;maintenance of localization;0.0324671249764447!GO:0002250;adaptive immune response;0.0324671249764447!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0324671249764447!GO:0046365;monosaccharide catabolic process;0.0325950139881537!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0331900203926982!GO:0030695;GTPase regulator activity;0.0334519412400347!GO:0042157;lipoprotein metabolic process;0.0334809626991045!GO:0051539;4 iron, 4 sulfur cluster binding;0.03356061263066!GO:0009161;ribonucleoside monophosphate metabolic process;0.033591740316475!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.033591740316475!GO:0005083;small GTPase regulator activity;0.0335968320714297!GO:0006505;GPI anchor metabolic process;0.0340053594524749!GO:0006508;proteolysis;0.0355753109376957!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0356574719573194!GO:0045047;protein targeting to ER;0.0356574719573194!GO:0008312;7S RNA binding;0.0357302016950821!GO:0046164;alcohol catabolic process;0.0357302016950821!GO:0019747;regulation of isoprenoid metabolic process;0.0359214570278649!GO:0007042;lysosomal lumen acidification;0.0359977046330027!GO:0032763;regulation of mast cell cytokine production;0.0368544195754796!GO:0032762;mast cell cytokine production;0.0368544195754796!GO:0005099;Ras GTPase activator activity;0.0375874725620917!GO:0006081;aldehyde metabolic process;0.0378950686949708!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0384975525695481!GO:0001836;release of cytochrome c from mitochondria;0.0385813038106852!GO:0007021;tubulin folding;0.0392502641769777!GO:0002444;myeloid leukocyte mediated immunity;0.039499841872427!GO:0005784;translocon complex;0.0399381100475598!GO:0006213;pyrimidine nucleoside metabolic process;0.040034498073632!GO:0031324;negative regulation of cellular metabolic process;0.040034498073632!GO:0046966;thyroid hormone receptor binding;0.0400453031379673!GO:0004563;beta-N-acetylhexosaminidase activity;0.0400625393738344!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0401029192090394!GO:0016272;prefoldin complex;0.0401866187301413!GO:0016251;general RNA polymerase II transcription factor activity;0.040194814268219!GO:0030508;thiol-disulfide exchange intermediate activity;0.0401989761566843!GO:0051223;regulation of protein transport;0.0402530734115087!GO:0051881;regulation of mitochondrial membrane potential;0.0406506405284621!GO:0045309;protein phosphorylated amino acid binding;0.0409625390610682!GO:0015035;protein disulfide oxidoreductase activity;0.0418335780958166!GO:0004218;cathepsin S activity;0.0418361186290813!GO:0006260;DNA replication;0.0423537022581843!GO:0002274;myeloid leukocyte activation;0.0425163083668076!GO:0009124;nucleoside monophosphate biosynthetic process;0.0430458860050054!GO:0009123;nucleoside monophosphate metabolic process;0.0430458860050054!GO:0007162;negative regulation of cell adhesion;0.0438477325586809!GO:0044452;nucleolar part;0.0447418806031254!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.045356067929098!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0454233799371675!GO:0019320;hexose catabolic process;0.0455843337897586!GO:0051085;chaperone cofactor-dependent protein folding;0.045674291827026!GO:0006622;protein targeting to lysosome;0.0457741647976666!GO:0015923;mannosidase activity;0.0459069804007503!GO:0031625;ubiquitin protein ligase binding;0.0459069804007503!GO:0051219;phosphoprotein binding;0.0461241257701692!GO:0031124;mRNA 3'-end processing;0.0461241257701692!GO:0005832;chaperonin-containing T-complex;0.0461241257701692!GO:0000059;protein import into nucleus, docking;0.0464015549476481!GO:0006302;double-strand break repair;0.0466382852783906!GO:0000118;histone deacetylase complex;0.0467072650353092!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0472978815833343!GO:0001887;selenium metabolic process;0.0479705213478672!GO:0003690;double-stranded DNA binding;0.0482434939032891!GO:0016070;RNA metabolic process;0.0482434939032891!GO:0007259;JAK-STAT cascade;0.0487057907708624!GO:0006520;amino acid metabolic process;0.0494165379311625 | |||
|sample_id=13317 | |sample_id=13317 | ||
|sample_note= | |sample_note= | ||
| Line 75: | Line 100: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|time= 00hr00min | |||
|timecourse=Macrophage_influenza_infection | |||
|top_motifs=SREBF1,2:2.85139889757;EN1,2:1.85365628891;RXRA_VDR{dimer}:1.80966439535;NR6A1:1.66662867324;ESRRA:1.51251476718;PAX8:1.39783315289;IRF7:1.33729727182;ESR1:1.27417370157;IRF1,2:1.20747216549;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.20117813585;SPIB:1.18520637076;NFIL3:1.18401943264;NANOG{mouse}:1.16726055228;TFCP2:1.10905832843;DMAP1_NCOR{1,2}_SMARC:1.06544407211;SPI1:1.04060257043;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.988391522776;FOXD3:0.935031988998;HMX1:0.791770761265;LHX3,4:0.779965990423;NFE2L1:0.762552394322;RXR{A,B,G}:0.758542190411;NKX2-2,8:0.743786753881;IKZF2:0.743642366401;EBF1:0.741349315581;GLI1..3:0.730551525833;HNF4A_NR2F1,2:0.677514840754;NFE2L2:0.637718796571;HLF:0.623981625924;NFKB1_REL_RELA:0.616028718282;ETS1,2:0.604597396181;FOXP3:0.562160908955;HAND1,2:0.556538706813;POU5F1:0.551298210138;MYOD1:0.538803605229;PAX1,9:0.528651617136;TLX2:0.510314786881;OCT4_SOX2{dimer}:0.492204185016;EP300:0.464670733604;PPARG:0.462445669689;NKX6-1,2:0.424629858991;SMAD1..7,9:0.404825097592;CEBPA,B_DDIT3:0.375051525231;HES1:0.372934619258;RORA:0.356876459263;STAT2,4,6:0.346466923095;ARID5B:0.303285726772;RUNX1..3:0.299523116515;PAX2:0.29124357275;SPZ1:0.267180667995;NKX3-2:0.214213955428;TBP:0.213528064862;MAFB:0.142341882055;IKZF1:0.139495438478;CDX1,2,4:0.109787941942;MTF1:0.0928545122845;ELF1,2,4:0.0663078786501;ALX4:0.0603325774862;VSX1,2:0.0354622519657;NFE2:0.0304379679336;FOSL2:0.0294982610737;TGIF1:-0.00930457922819;NFIX:-0.0133634491052;KLF4:-0.0152592164011;NR5A1,2:-0.0363014444675;FOX{F1,F2,J1}:-0.0387214578461;PRDM1:-0.0409043552836;PAX6:-0.0443688688057;ATF4:-0.050444339884;MYFfamily:-0.0554909113355;bHLH_family:-0.0648289447021;NHLH1,2:-0.0693294725137;GATA4:-0.0969060229328;ZEB1:-0.100382237085;TFAP4:-0.10124135496;NKX2-3_NKX2-5:-0.101659555971;ZBTB16:-0.102011678122;REST:-0.107775419545;UFEwm:-0.111452360327;FOS_FOS{B,L1}_JUN{B,D}:-0.128328647056;PRRX1,2:-0.149818253554;TAL1_TCF{3,4,12}:-0.155489029306;RFX2..5_RFXANK_RFXAP:-0.166775959297;HMGA1,2:-0.175603627004;GATA6:-0.178650087258;FOXO1,3,4:-0.211909518949;PAX4:-0.249678828127;BACH2:-0.280383276964;HOXA9_MEIS1:-0.291912394257;CRX:-0.293714141655;FOXA2:-0.306521839364;NR3C1:-0.321242274619;HOX{A5,B5}:-0.330484670702;GZF1:-0.354757537875;SRF:-0.381842765829;ATF5_CREB3:-0.397550932109;SOX5:-0.431131890503;LMO2:-0.459558961306;CUX2:-0.501223508545;ATF2:-0.522331964018;FOXN1:-0.525262606596;ZNF238:-0.559005798259;T:-0.560638517252;ONECUT1,2:-0.564938875821;AR:-0.571987613146;HNF1A:-0.578560903652;FOX{D1,D2}:-0.582405711042;MEF2{A,B,C,D}:-0.609208236752;ZNF148:-0.633267497942;ZNF423:-0.633378254611;YY1:-0.647666926917;MYB:-0.649761045358;PDX1:-0.651880037143;NR1H4:-0.656342293349;STAT5{A,B}:-0.669607333829;FOXM1:-0.674182940141;DBP:-0.681990673704;FOXQ1:-0.690140461729;ZBTB6:-0.736516096007;HOX{A6,A7,B6,B7}:-0.750465219001;HIF1A:-0.754703471838;CDC5L:-0.757006937649;GFI1B:-0.760931327373;NFATC1..3:-0.821841938712;HOX{A4,D4}:-0.830817870367;POU6F1:-0.838200077913;SOX{8,9,10}:-0.844176612337;ALX1:-0.844245916731;SNAI1..3:-0.84527827203;TLX1..3_NFIC{dimer}:-0.856593717687;PAX5:-0.879315149389;FOXP1:-0.883194845839;TP53:-0.892362909319;ZIC1..3:-0.914381654567;BREu{core}:-0.970411730583;SP1:-1.01299626113;EGR1..3:-1.01486160191;POU2F1..3:-1.02525290196;HSF1,2:-1.05228746543;TOPORS:-1.09715158677;GTF2I:-1.09823957073;POU3F1..4:-1.10676898117;ATF6:-1.11553973197;STAT1,3:-1.11624501119;GTF2A1,2:-1.12772715158;BPTF:-1.12926465781;TEAD1:-1.14279919137;XBP1:-1.16218911064;MYBL2:-1.16345775015;TFAP2{A,C}:-1.16512259816;TEF:-1.16583211906;SOX2:-1.16588485985;NANOG:-1.21097736105;RREB1:-1.21665171239;HIC1:-1.22546432455;TFAP2B:-1.24127690437;GCM1,2:-1.24478502857;LEF1_TCF7_TCF7L1,2:-1.24528134595;XCPE1{core}:-1.25322160102;PAX3,7:-1.27149339931;MED-1{core}:-1.2950615112;JUN:-1.29860095586;ZFP161:-1.30457811672;AHR_ARNT_ARNT2:-1.3061928436;PITX1..3:-1.3259622676;CREB1:-1.32837054547;FOXL1:-1.33495847361;E2F1..5:-1.36902228577;ADNP_IRX_SIX_ZHX:-1.39609658838;SOX17:-1.39758769819;FOX{I1,J2}:-1.42016133123;ELK1,4_GABP{A,B1}:-1.42209554144;AIRE:-1.44172402331;NKX3-1:-1.4447929525;ZNF143:-1.44862574932;EVI1:-1.48142689683;MTE{core}:-1.53863855081;MAZ:-1.54143710794;HBP1_HMGB_SSRP1_UBTF:-1.55334012252;NFY{A,B,C}:-1.55605158453;RFX1:-1.56952287066;ZNF384:-1.59344789929;PATZ1:-1.61649592058;RBPJ:-1.61874896336;TBX4,5:-1.66925794032;MZF1:-1.69242129116;NRF1:-1.70736589658;GFI1:-1.78417178763;NKX2-1,4:-1.79039303151;PBX1:-1.87465823532;TFDP1:-2.0410995313;POU1F1:-2.27462104393 | |top_motifs=SREBF1,2:2.85139889757;EN1,2:1.85365628891;RXRA_VDR{dimer}:1.80966439535;NR6A1:1.66662867324;ESRRA:1.51251476718;PAX8:1.39783315289;IRF7:1.33729727182;ESR1:1.27417370157;IRF1,2:1.20747216549;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.20117813585;SPIB:1.18520637076;NFIL3:1.18401943264;NANOG{mouse}:1.16726055228;TFCP2:1.10905832843;DMAP1_NCOR{1,2}_SMARC:1.06544407211;SPI1:1.04060257043;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.988391522776;FOXD3:0.935031988998;HMX1:0.791770761265;LHX3,4:0.779965990423;NFE2L1:0.762552394322;RXR{A,B,G}:0.758542190411;NKX2-2,8:0.743786753881;IKZF2:0.743642366401;EBF1:0.741349315581;GLI1..3:0.730551525833;HNF4A_NR2F1,2:0.677514840754;NFE2L2:0.637718796571;HLF:0.623981625924;NFKB1_REL_RELA:0.616028718282;ETS1,2:0.604597396181;FOXP3:0.562160908955;HAND1,2:0.556538706813;POU5F1:0.551298210138;MYOD1:0.538803605229;PAX1,9:0.528651617136;TLX2:0.510314786881;OCT4_SOX2{dimer}:0.492204185016;EP300:0.464670733604;PPARG:0.462445669689;NKX6-1,2:0.424629858991;SMAD1..7,9:0.404825097592;CEBPA,B_DDIT3:0.375051525231;HES1:0.372934619258;RORA:0.356876459263;STAT2,4,6:0.346466923095;ARID5B:0.303285726772;RUNX1..3:0.299523116515;PAX2:0.29124357275;SPZ1:0.267180667995;NKX3-2:0.214213955428;TBP:0.213528064862;MAFB:0.142341882055;IKZF1:0.139495438478;CDX1,2,4:0.109787941942;MTF1:0.0928545122845;ELF1,2,4:0.0663078786501;ALX4:0.0603325774862;VSX1,2:0.0354622519657;NFE2:0.0304379679336;FOSL2:0.0294982610737;TGIF1:-0.00930457922819;NFIX:-0.0133634491052;KLF4:-0.0152592164011;NR5A1,2:-0.0363014444675;FOX{F1,F2,J1}:-0.0387214578461;PRDM1:-0.0409043552836;PAX6:-0.0443688688057;ATF4:-0.050444339884;MYFfamily:-0.0554909113355;bHLH_family:-0.0648289447021;NHLH1,2:-0.0693294725137;GATA4:-0.0969060229328;ZEB1:-0.100382237085;TFAP4:-0.10124135496;NKX2-3_NKX2-5:-0.101659555971;ZBTB16:-0.102011678122;REST:-0.107775419545;UFEwm:-0.111452360327;FOS_FOS{B,L1}_JUN{B,D}:-0.128328647056;PRRX1,2:-0.149818253554;TAL1_TCF{3,4,12}:-0.155489029306;RFX2..5_RFXANK_RFXAP:-0.166775959297;HMGA1,2:-0.175603627004;GATA6:-0.178650087258;FOXO1,3,4:-0.211909518949;PAX4:-0.249678828127;BACH2:-0.280383276964;HOXA9_MEIS1:-0.291912394257;CRX:-0.293714141655;FOXA2:-0.306521839364;NR3C1:-0.321242274619;HOX{A5,B5}:-0.330484670702;GZF1:-0.354757537875;SRF:-0.381842765829;ATF5_CREB3:-0.397550932109;SOX5:-0.431131890503;LMO2:-0.459558961306;CUX2:-0.501223508545;ATF2:-0.522331964018;FOXN1:-0.525262606596;ZNF238:-0.559005798259;T:-0.560638517252;ONECUT1,2:-0.564938875821;AR:-0.571987613146;HNF1A:-0.578560903652;FOX{D1,D2}:-0.582405711042;MEF2{A,B,C,D}:-0.609208236752;ZNF148:-0.633267497942;ZNF423:-0.633378254611;YY1:-0.647666926917;MYB:-0.649761045358;PDX1:-0.651880037143;NR1H4:-0.656342293349;STAT5{A,B}:-0.669607333829;FOXM1:-0.674182940141;DBP:-0.681990673704;FOXQ1:-0.690140461729;ZBTB6:-0.736516096007;HOX{A6,A7,B6,B7}:-0.750465219001;HIF1A:-0.754703471838;CDC5L:-0.757006937649;GFI1B:-0.760931327373;NFATC1..3:-0.821841938712;HOX{A4,D4}:-0.830817870367;POU6F1:-0.838200077913;SOX{8,9,10}:-0.844176612337;ALX1:-0.844245916731;SNAI1..3:-0.84527827203;TLX1..3_NFIC{dimer}:-0.856593717687;PAX5:-0.879315149389;FOXP1:-0.883194845839;TP53:-0.892362909319;ZIC1..3:-0.914381654567;BREu{core}:-0.970411730583;SP1:-1.01299626113;EGR1..3:-1.01486160191;POU2F1..3:-1.02525290196;HSF1,2:-1.05228746543;TOPORS:-1.09715158677;GTF2I:-1.09823957073;POU3F1..4:-1.10676898117;ATF6:-1.11553973197;STAT1,3:-1.11624501119;GTF2A1,2:-1.12772715158;BPTF:-1.12926465781;TEAD1:-1.14279919137;XBP1:-1.16218911064;MYBL2:-1.16345775015;TFAP2{A,C}:-1.16512259816;TEF:-1.16583211906;SOX2:-1.16588485985;NANOG:-1.21097736105;RREB1:-1.21665171239;HIC1:-1.22546432455;TFAP2B:-1.24127690437;GCM1,2:-1.24478502857;LEF1_TCF7_TCF7L1,2:-1.24528134595;XCPE1{core}:-1.25322160102;PAX3,7:-1.27149339931;MED-1{core}:-1.2950615112;JUN:-1.29860095586;ZFP161:-1.30457811672;AHR_ARNT_ARNT2:-1.3061928436;PITX1..3:-1.3259622676;CREB1:-1.32837054547;FOXL1:-1.33495847361;E2F1..5:-1.36902228577;ADNP_IRX_SIX_ZHX:-1.39609658838;SOX17:-1.39758769819;FOX{I1,J2}:-1.42016133123;ELK1,4_GABP{A,B1}:-1.42209554144;AIRE:-1.44172402331;NKX3-1:-1.4447929525;ZNF143:-1.44862574932;EVI1:-1.48142689683;MTE{core}:-1.53863855081;MAZ:-1.54143710794;HBP1_HMGB_SSRP1_UBTF:-1.55334012252;NFY{A,B,C}:-1.55605158453;RFX1:-1.56952287066;ZNF384:-1.59344789929;PATZ1:-1.61649592058;RBPJ:-1.61874896336;TBX4,5:-1.66925794032;MZF1:-1.69242129116;NRF1:-1.70736589658;GFI1:-1.78417178763;NKX2-1,4:-1.79039303151;PBX1:-1.87465823532;TFDP1:-2.0410995313;POU1F1:-2.27462104393 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:13317-143A5;search_select_hide=table117:FF:13317-143A5 | |||
}} | }} | ||
Latest revision as of 18:56, 4 June 2020
| Name: | Monocyte-derived macrophages response to udorn influenza infection |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13646 |
| Sample type: | time courses |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13646
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13646
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.082 |
| 10 | 10 | 0.0711 |
| 100 | 100 | 0.774 |
| 101 | 101 | 0.349 |
| 102 | 102 | 0.848 |
| 103 | 103 | 0.0676 |
| 104 | 104 | 0.965 |
| 105 | 105 | 0.378 |
| 106 | 106 | 0.00569 |
| 107 | 107 | 0.0917 |
| 108 | 108 | 0.634 |
| 109 | 109 | 0.0741 |
| 11 | 11 | 0.0545 |
| 110 | 110 | 0.117 |
| 111 | 111 | 0.00398 |
| 112 | 112 | 0.0297 |
| 113 | 113 | 0.917 |
| 114 | 114 | 0.00808 |
| 115 | 115 | 0.721 |
| 116 | 116 | 0.532 |
| 117 | 117 | 0.186 |
| 118 | 118 | 0.38 |
| 119 | 119 | 0.035 |
| 12 | 12 | 0.852 |
| 120 | 120 | 0.201 |
| 121 | 121 | 0.516 |
| 122 | 122 | 0.906 |
| 123 | 123 | 0.226 |
| 124 | 124 | 0.25 |
| 125 | 125 | 0.124 |
| 126 | 126 | 0.307 |
| 127 | 127 | 0.099 |
| 128 | 128 | 0.0162 |
| 129 | 129 | 0.168 |
| 13 | 13 | 0.104 |
| 130 | 130 | 0.731 |
| 131 | 131 | 0.831 |
| 132 | 132 | 0.647 |
| 133 | 133 | 0.978 |
| 134 | 134 | 0.64 |
| 135 | 135 | 0.0368 |
| 136 | 136 | 0.81 |
| 137 | 137 | 0.152 |
| 138 | 138 | 0.378 |
| 139 | 139 | 0.034 |
| 14 | 14 | 0.448 |
| 140 | 140 | 0.0267 |
| 141 | 141 | 0.542 |
| 142 | 142 | 0.851 |
| 143 | 143 | 0.0617 |
| 144 | 144 | 0.506 |
| 145 | 145 | 0.184 |
| 146 | 146 | 0.788 |
| 147 | 147 | 0.844 |
| 148 | 148 | 0.0161 |
| 149 | 149 | 0.131 |
| 15 | 15 | 0.0882 |
| 150 | 150 | 0.464 |
| 151 | 151 | 0.517 |
| 152 | 152 | 0.153 |
| 153 | 153 | 0.8 |
| 154 | 154 | 0.913 |
| 155 | 155 | 0.157 |
| 156 | 156 | 0.86 |
| 157 | 157 | 0.753 |
| 158 | 158 | 0.602 |
| 159 | 159 | 0.377 |
| 16 | 16 | 0.168 |
| 160 | 160 | 0.0644 |
| 161 | 161 | 0.279 |
| 162 | 162 | 0.778 |
| 163 | 163 | 0.908 |
| 164 | 164 | 0.205 |
| 165 | 165 | 0.324 |
| 166 | 166 | 0.951 |
| 167 | 167 | 0.226 |
| 168 | 168 | 0.582 |
| 169 | 169 | 0.00541 |
| 17 | 17 | 0.107 |
| 18 | 18 | 0.131 |
| 19 | 19 | 0.161 |
| 2 | 2 | 0.693 |
| 20 | 20 | 0.982 |
| 21 | 21 | 0.461 |
| 22 | 22 | 0.232 |
| 23 | 23 | 0.165 |
| 24 | 24 | 0.226 |
| 25 | 25 | 0.569 |
| 26 | 26 | 0.0214 |
| 27 | 27 | 0.152 |
| 28 | 28 | 0.804 |
| 29 | 29 | 0.199 |
| 3 | 3 | 0.0817 |
| 30 | 30 | 0.841 |
| 31 | 31 | 0.533 |
| 32 | 32 | 0.111 |
| 33 | 33 | 0.398 |
| 34 | 34 | 0.377 |
| 35 | 35 | 0.305 |
| 36 | 36 | 0.0278 |
| 37 | 37 | 0.101 |
| 38 | 38 | 0.152 |
| 39 | 39 | 0.469 |
| 4 | 4 | 0.718 |
| 40 | 40 | 0.0674 |
| 41 | 41 | 0.129 |
| 42 | 42 | 0.587 |
| 43 | 43 | 0.0992 |
| 44 | 44 | 0.0225 |
| 45 | 45 | 0.526 |
| 46 | 46 | 0.0809 |
| 47 | 47 | 0.234 |
| 48 | 48 | 0.242 |
| 49 | 49 | 0.137 |
| 5 | 5 | 0.326 |
| 50 | 50 | 0.91 |
| 51 | 51 | 0.304 |
| 52 | 52 | 0.273 |
| 53 | 53 | 0.488 |
| 54 | 54 | 0.309 |
| 55 | 55 | 0.116 |
| 56 | 56 | 0.576 |
| 57 | 57 | 0.316 |
| 58 | 58 | 0.296 |
| 59 | 59 | 0.0598 |
| 6 | 6 | 0.513 |
| 60 | 60 | 0.0462 |
| 61 | 61 | 0.292 |
| 62 | 62 | 0.163 |
| 63 | 63 | 0.23 |
| 64 | 64 | 0.228 |
| 65 | 65 | 0.0606 |
| 66 | 66 | 0.797 |
| 67 | 67 | 0.176 |
| 68 | 68 | 0.583 |
| 69 | 69 | 0.28 |
| 7 | 7 | 0.228 |
| 70 | 70 | 0.00843 |
| 71 | 71 | 0.0445 |
| 72 | 72 | 0.239 |
| 73 | 73 | 0.0987 |
| 74 | 74 | 0.691 |
| 75 | 75 | 0.0954 |
| 76 | 76 | 0.643 |
| 77 | 77 | 0.129 |
| 78 | 78 | 0.12 |
| 79 | 79 | 0.054 |
| 8 | 8 | 0.0603 |
| 80 | 80 | 0.623 |
| 81 | 81 | 0.181 |
| 82 | 82 | 0.0347 |
| 83 | 83 | 0.342 |
| 84 | 84 | 0.779 |
| 85 | 85 | 0.00695 |
| 86 | 86 | 0.209 |
| 87 | 87 | 0.203 |
| 88 | 88 | 0.63 |
| 89 | 89 | 0.0733 |
| 9 | 9 | 0.313 |
| 90 | 90 | 0.0445 |
| 91 | 91 | 0.468 |
| 92 | 92 | 0.107 |
| 93 | 93 | 0.487 |
| 94 | 94 | 0.0173 |
| 95 | 95 | 0.154 |
| 96 | 96 | 0.0858 |
| 97 | 97 | 0.782 |
| 98 | 98 | 0.0778 |
| 99 | 99 | 0.737 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13646
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011215 human Monocyte-derived macrophages 0h after udorn influenza infection sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000235 (macrophage)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000357 (0 hr sample)
0000086 (human macrophage sample)
0000647 (udorn influenza infection sample)
0011215 (human Monocyte-derived macrophages 0h after udorn influenza infection sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
