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{{f5samples
{{f5samples
|id=FF:10730-110B1
|DRA_sample_Accession=CAGE@SAMD00006019
|name=non-small cell lung cancer cell line:NCI-H1385, biol_rep1
|accession_numbers=CAGE;DRX007775;DRR008647;DRZ000072;DRZ001457;DRZ011422;DRZ012807
|sample_id=10730
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
|rna_tube_id=110B1
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000082,CL:0000255,CL:0000057,CL:0002553
|rna_box=110
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305,DOID:1115
|rna_position=B1
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100353,FF:0100453,FF:0100400,FF:0101120,FF:0100460,FF:0100762,FF:0102553,FF:0103764
|sample_cell_lot=
|comment=
|sample_cell_catalog=CRL-5867
|created_by=
|sample_company=ATCC
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
|expression_enrichment_score=chr12:103351444..103351461,+!p1@ASCL1!2.70!501.96!ASCL1;;chr17:46622205..46622218,-!p3@HOXB2!2.41!292.21!HOXB2;;chrX:30327504..30327509,-!p1@NR0B1!2.35!224.96!NR0B1;;chr8:53166899..53166914,-!p3@ST18!2.28!190.54!ST18;;chr13:79177674..79177701,-!p1@POU4F1!2.18!152.11!POU4F1;;chr20:20348740..20348757,+!p1@INSM1!2.18!151.31!INSM1;;chr17:46703687..46703740,-!p1@HOXB9!2.14!136.10!HOXB9;;chr18:55102598..55102623,+!p1@ONECUT2!1.93!84.06!ONECUT2;;chr1:151032860..151032918,+!p1@MLLT11!1.88!835.80!MLLT11;;chr18:55102628..55102646,+!p2@ONECUT2!1.88!75.25!ONECUT2;;chr1:201979743..201979762,+!p1@ELF3!1.88!74.45!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.82!65.65!ELF3;;chr14:38064429..38064486,-!p1@FOXA1!1.78!59.24!FOXA1;;chr8:53162037..53162058,-!p5@ST18!1.77!57.64!ST18;;chr17:46703826..46703845,-!p3@HOXB9!1.72!52.04!HOXB9;;chr17:46622229..46622257,-!p6@HOXB2!1.70!56.84!HOXB2;;chr2:176972000..176972025,+!p4@HOXD11!1.70!48.83!HOXD11;;chr17:46675558..46675577,-!p2@HOXB6!1.67!45.63!HOXB6;;chr2:242556880..242556899,-!p5@THAP4!1.62!40.83!THAP4;;chr17:46692457..46692484,-!p2@HOXB8!1.61!40.03!HOXB8;;chr2:5832508..5832524,+!p1@SOX11!1.59!37.63!SOX11;;chr2:176973498..176973524,+!p1@HOXD10!1.57!36.03!HOXD10;;chr17:46622440..46622477,-!p5@HOXB2!1.55!38.43!HOXB2;;chr1:151032922..151032951,+!p2@MLLT11!1.52!52.84!MLLT11;;chr2:2334997..2335053,-!p1@MYT1L!1.52!32.02!MYT1L;;chr14:29235961..29236008,+!p1@FOXG1!1.52!32.02!FOXG1;;chr6:19837592..19837621,+!p1@ID4!1.48!171.32!ID4;;chr2:242556900..242556916,-!p6@THAP4!1.45!27.22!THAP4;;chr14:36989427..36989442,-!p1@NKX2-1!1.43!25.62!NKX2-1;;chr17:46682321..46682362,-!p1@HOXB6!1.43!25.62!HOXB6;;chr1:151032782..151032801,+!p4@MLLT11!1.42!49.64!MLLT11;;chr18:55102806..55102847,+!p3@ONECUT2!1.41!24.82!ONECUT2;;chr17:46692624..46692659,-!p3@HOXB8!1.40!24.02!HOXB8;;chr18:72922743..72922761,+!p3@TSHZ1!1.38!73.65!TSHZ1;;chr10:135122906..135122921,+!p4@ZNF511!1.38!23.22!ZNF511;;chr8:53161967..53161974,-!p11@ST18!1.37!22.42!ST18;;chr9:96717629..96717644,-!p1@BARX1!1.37!22.42!BARX1;;chr17:46692603..46692621,-!p6@HOXB8!1.37!22.42!HOXB8;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.36!200.14!ZNF595;;chr1:164528687..164528711,+!p6@PBX1!1.36!25.62!PBX1;;chr1:214161272..214161322,+!p1@PROX1!1.35!29.62!PROX1;;chr17:46667594..46667619,-!p1@HOXB3!1.35!21.62!HOXB3;;chr6:28321971..28321995,-!p1@ZNF323!1.34!20.81!ZNF323;;chr20:30193083..30193098,+!p1@ID1!1.31!1509.08!ID1;;chr1:151032833..151032850,+!p3@MLLT11!1.31!43.23!MLLT11;;chr17:46622070..46622109,-!p1@HOXB2!1.31!43.23!HOXB2;;chr8:60031809..60031835,-!p4@TOX!1.30!24.02!TOX;;chr2:176971685..176971700,+!p6@HOXD11!1.27!17.61!HOXD11;;chr2:176973275..176973300,+!p4@HOXD10!1.27!17.61!HOXD10;;chr17:46675619..46675642,-!p5@HOXB6!1.27!17.61!HOXB6;;chr17:46690839..46690884,-!p1@HOXB8!1.25!16.81!HOXB8;;chr17:46671108..46671147,-!p1@HOXB5!1.23!16.01!HOXB5;;chr18:55102959..55102985,+!p6@ONECUT2!1.23!16.01!ONECUT2;;chr13:79177703..79177729,-!p2@POU4F1!1.23!16.01!POU4F1;;chr2:176981499..176981522,+!p2@HOXD10!1.21!15.21!HOXD10;;chr1:151032739..151032748,+!p6@MLLT11!1.20!18.41!MLLT11;;chr20:22564895..22564910,-!p1@FOXA2!1.19!14.41!FOXA2;;chr8:73921136..73921151,+!p2@TERF1!1.17!20.81!TERF1;;chr2:166326200..166326216,+!p1@CSRNP3!1.17!20.01!CSRNP3;;chr2:219849805..219849819,-!p3@FEV!1.16!13.61!FEV;;chr1:27240455..27240474,-!p1@NR0B2!1.16!13.61!NR0B2;;chr20:22565370..22565388,-!p2@FOXA2!1.14!12.81!FOXA2;;chr2:176981526..176981543,+!p3@HOXD10!1.14!12.81!HOXD10;;chr17:46622175..46622186,-!p12@HOXB2!1.14!12.81!HOXB2;;chr6:28321909..28321965,-!p3@ZNF323!1.14!12.81!ZNF323;;chr8:40755333..40755352,-!p1@ZMAT4!1.14!12.81!ZMAT4;;chr14:37131058..37131139,+!p1@PAX9!1.14!12.81!PAX9;;chr17:46622114..46622138,-!p4@HOXB2!1.13!19.21!HOXB2;;chr17:46675420..46675465,-!p3@HOXB6!1.13!14.41!HOXB6;;chr1:211433275..211433335,+!p2@RCOR3!1.11!36.83!RCOR3;;chr17:46691990..46692004,-!p11@HOXB8!1.11!12.01!HOXB8;;chr10:135122868..135122893,+!p3@ZNF511!1.11!12.01!ZNF511;;chr2:176994408..176994492,+!p1@HOXD8!1.11!12.01!HOXD8;;chr5:2751762..2751784,-!p1@IRX2!1.11!12.01!IRX2;;chr8:53162019..53162028,-!p12@ST18!1.11!12.01!ST18;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.11!12.01!ZBED1;;chr18:45935720..45935772,-!p1@ZBTB7C!1.09!11.21!ZBTB7C;;chr2:219849784..219849798,-!p5@FEV!1.09!11.21!FEV;;chr2:45236540..45236577,-!p1@SIX2!1.09!11.21!SIX2;;chr2:176971980..176971995,+!p9@HOXD11!1.06!10.41!HOXD11;;chr2:5832493..5832507,+!p2@SOX11!1.06!10.41!SOX11;;chr1:216896752..216896778,-!p1@ESRRG!1.06!10.41!ESRRG;;chr20:22565185..22565223,-!p3@FOXA2!1.06!10.41!FOXA2;;chr12:103352277..103352324,+!p2@ASCL1!1.06!10.41!ASCL1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.06!10.41!SEBOX;;chr17:46703528..46703549,-!p5@HOXB9!1.06!10.41!HOXB9;;chr7:63505799..63505904,+!p1@ZNF727!1.06!10.41!ZNF727;;chr7:149470641..149470694,-!p1@ZNF467!1.05!47.23!ZNF467;;chr1:209979467..209979494,-!p1@IRF6!1.04!11.21!IRF6;;chr8:124286670..124286702,-!p3@ZHX1!1.03!16.81!ZHX1;;chr8:60031762..60031803,-!p3@TOX!1.03!14.41!TOX;;chr17:79881332..79881348,-!p3@MAFG!1.03!14.41!MAFG;;chr17:46692287..46692317,-!p7@HOXB8!1.03!9.61!HOXB8;;chr2:219849644..219849655,-!p7@FEV!1.03!9.61!FEV;;chr14:38064590..38064606,-!p2@FOXA1!1.03!9.61!FOXA1;;chr8:60031619..60031676,-!p1@TOX!1.02!20.81!TOX;;chr15:57511609..57511651,+!p2@TCF12!1.02!16.01!TCF12;;chr19:22817119..22817145,+!p1@ZNF492!1.00!15.21!ZNF492;;chr17:53342311..53342400,+!p1@HLF!1.00!10.41!HLF;;chr1:41827095..41827155,+!p1@FOXO6!0.99!12.01!FOXO6;;chr5:2751785..2751808,-!p2@IRX2!0.99!8.81!IRX2;;chr14:36989358..36989378,-!p3@NKX2-1!0.99!8.81!NKX2-1;;chr2:85981107..85981120,+!p3@ATOH8!0.99!8.81!ATOH8;;chr5:321810..321877,+!p1@AHRR!0.98!28.02!AHRR;;chr17:46667561..46667572,-!p4@HOXB3!0.95!8.01!HOXB3;;chr2:176972082..176972096,+!p8@HOXD11!0.95!8.01!HOXD11;;chr2:176981546..176981557,+!p5@HOXD10!0.95!8.01!HOXD10;;chr2:177001290..177001315,+!p1@HOXD3!0.95!8.01!HOXD3;;chr2:2335109..2335134,-!p2@MYT1L!0.95!8.01!MYT1L;;chr2:74374995..74375055,-!p1@BOLA3!0.94!353.05!BOLA3;;chr5:124084493..124084524,-!p2@ZNF608!0.94!17.61!ZNF608;;chrX:128657413..128657456,-!p2@SMARCA1!0.93!67.25!SMARCA1;;chrX:84498989..84499003,+!p1@ZNF711!0.93!10.41!ZNF711;;chr17:46687959..46688007,-!p2@HOXB7!0.93!10.41!HOXB7;;chr19:19976683..19976709,+!p1@ZNF253!0.92!33.62!ZNF253;;chr17:46675539..46675551,-!p7@HOXB6!0.91!7.21!HOXB6;;chr8:53166916..53166925,-!p10@ST18!0.91!7.21!ST18;;chr2:122042770..122042785,-!p1@TFCP2L1!0.91!7.21!TFCP2L1;;chr2:176957443..176957457,+!p1@HOXD13!0.91!7.21!HOXD13;;chr1:216896780..216896800,-!p2@ESRRG!0.91!7.21!ESRRG;;chr1:217262933..217262968,-!p3@ESRRG!0.91!7.21!ESRRG;;chr20:62795799..62795819,+!p1@MYT1!0.91!7.21!MYT1;;chr14:29236269..29236285,+!p3@FOXG1!0.91!7.21!FOXG1;;chr2:8822176..8822196,+!p1@ID2!0.90!1023.93!ID2;;chr19:23869970..23869991,-!p1@ZNF675!0.89!27.22!ZNF675;;chr10:35484053..35484076,+!p1@CREM!0.89!17.61!CREM;;chr19:38085768..38085821,+!p1@ZNF540!0.89!10.41!ZNF540;;chr2:74375058..74375069,-!p3@BOLA3!0.88!12.81!BOLA3;;chr1:149858461..149858479,+!p1@BOLA1!0.87!2673.11!BOLA1;;chr17:46671504..46671541,-!p2@HOXB5!0.87!6.40!HOXB5;;chr17:48072574..48072597,-!p1@DLX3!0.87!6.40!DLX3;;chr14:29237009..29237049,+!p4@FOXG1!0.87!6.40!FOXG1;;chr14:36989379..36989390,-!p8@NKX2-1!0.87!6.40!NKX2-1;;chr2:176972047..176972063,+!p7@HOXD11!0.87!6.40!HOXD11;;chr2:219849012..219849065,-!p1@FEV!0.87!6.40!FEV;;chr2:219849897..219849928,-!p2@FEV!0.87!6.40!FEV;;chr2:2328725..2328739,-!p5@MYT1L!0.87!6.40!MYT1L;;chr4:188916918..188916942,+!p1@ZFP42!0.87!6.40!ZFP42;;chr17:46621937..46621966,-!p2@HOXB2!0.86!17.61!HOXB2;;chr1:164528340..164528379,+!p4@PBX1!0.86!16.01!PBX1;;chr8:60031682..60031710,-!p2@TOX!0.86!10.41!TOX;;chr10:22292591..22292606,-!p2@DNAJC1!0.86!10.41!DNAJC1;;chr8:37553261..37553282,+!p2@ZNF703!0.85!49.64!ZNF703;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.85!13.61!ZNF395;;chr19:23941647..23941672,-!p2@ZNF681!0.85!10.41!ZNF681;;chr12:54785074..54785122,-!p2@ZNF385A!0.85!9.61!ZNF385A;;chr12:52445218..52445237,+!p1@NR4A1!0.83!77.66!NR4A1;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.83!34.42!ZNF10;;chr2:239148671..239148686,-!p1@HES6!0.83!22.42!HES6;;chr19:21265028..21265052,+!p2@ZNF714!0.82!10.41!ZNF714;;chr1:10754477..10754517,-!p1@CASZ1!0.82!9.61!CASZ1;;chr1:165414325..165414369,-!p1@RXRG!0.82!5.60!RXRG;;chr17:46621146..46621180,-!p10@HOXB2!0.82!5.60!HOXB2;;chr17:46675469..46675481,-!p4@HOXB6!0.82!5.60!HOXB6;;chr17:7197911..7197964,-!p1@YBX2!0.82!5.60!YBX2;;chr12:115121770..115121781,-!p4@TBX3!0.82!5.60!TBX3;;chr12:24102576..24102623,-!p2@SOX5!0.82!5.60!SOX5;;chr14:36990061..36990072,-!p11@NKX2-1!0.82!5.60!NKX2-1;;chr2:45236579..45236596,-!p2@SIX2!0.82!5.60!SIX2;;chr3:147111198..147111225,+!p4@ZIC1!0.82!5.60!ZIC1;;chr4:57547454..57547469,-!p1@HOPX!0.82!5.60!HOPX;;chr17:4981745..4981810,+!p1@ZFP3!0.81!28.82!ZFP3;;chr1:247267618..247267674,-!p1@ZNF669!0.80!45.63!ZNF669;;chr7:150974206..150974255,-!p1@SMARCD3!0.80!36.03!SMARCD3;;chr17:46688334..46688385,-!p1@HOXB7!0.80!8.01!HOXB7;;chr17:41623692..41623715,-!p1@ETV4!0.79!24.02!ETV4;;chr2:71127699..71127744,+!p1@VAX2!0.79!11.21!VAX2;;chr2:85981222..85981259,+!p2@ATOH8!0.79!8.81!ATOH8;;chr17:46621101..46621143,-!p7@HOXB2!0.79!7.21!HOXB2;;chr12:54772960..54773015,-!p3@ZNF385A!0.78!26.42!ZNF385A;;chr21:47063625..47063658,+!p1@PCBP3!0.78!24.02!PCBP3;;chr3:18486354..18486377,-!p2@SATB1!0.78!6.40!SATB1;;chr1:249132410..249132456,+!p1@ZNF672!0.77!40.03!ZNF672;;chr6:91006518..91006570,-!p1@BACH2!0.77!12.01!BACH2;;chr19:21264991..21265026,+!p1@ZNF714!0.76!34.42!ZNF714;;chr6:28092375..28092412,+!p1@ZSCAN16!0.76!21.62!ZSCAN16;;chr3:25469724..25469773,+!p1@RARB!0.76!7.21!RARB;;chr7:149470540..149470596,-!p2@ZNF467!0.76!6.40!ZNF467;;chr6:15401104..15401166,+!p5@JARID2!0.76!4.80!JARID2;;chr2:176957417..176957431,+!p2@HOXD13!0.76!4.80!HOXD13;;chr3:114819073..114819100,-!p10@ZBTB20!0.76!4.80!ZBTB20;;chr12:115121802..115121814,-!p5@TBX3!0.76!4.80!TBX3;;chr12:56415246..56415286,+!p2@IKZF4!0.76!4.80!IKZF4;;chr14:36989940..36989957,-!p2@NKX2-1!0.76!4.80!NKX2-1;;chr1:10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5.60!ZNF525;;chr1:154975110..154975149,+!p2@ZBTB7B!0.39!4.00!ZBTB7B;;chr1:211433151..211433191,+!p5@RCOR3!0.39!4.00!RCOR3;;chr10:97890262..97890298,+!p4@ZNF518A!0.39!3.20!ZNF518A;;chr12:125002827..125002855,-!p5@NCOR2!0.39!2.40!NCOR2;;chr19:49140595..49140607,-!p3@DBP!0.39!2.40!DBP;;chr19:52391220..52391251,-!p2@ZNF577!0.39!2.40!ZNF577;;chr3:107318157..107318172,+!p6@BBX!0.39!2.40!BBX;;chr3:193853927..193853944,+!p1@HES1!0.38!71.25!HES1;;chr2:148778652..148778672,+!p1@MBD5!0.38!26.42!MBD5;;chr6:31126291..31126399,+!p1@TCF19!0.38!20.01!TCF19;;chr20:25677465..25677497,-!p1@ZNF337!0.38!12.81!ZNF337;;chr2:178128199..178128245,-!p3@NFE2L2!0.38!11.21!NFE2L2;;chr8:144373550..144373617,+!p1@ZNF696!0.38!7.21!ZNF696;;chr17:41277372..41277418,-!p1@BRCA1!0.38!7.21!BRCA1;;chr19:23870007..23870022,-!p2@ZNF675!0.38!6.40!ZNF675;;chr18:47808120..47808171,-!p2@MBD1!0.38!4.80!MBD1;;chr12:72058102..72058127,+!p7@THAP2!0.38!3.20!THAP2;;chr2:174830540..174830563,-!p8@SP3!0.38!2.40!SP3;;chr20:6748325..6748352,+!p1@BMP2!0.38!2.40!BMP2;;chr19:45254508..45254528,+!p12@BCL3!0.38!1.60!BCL3;;chr8:80680078..80680101,-!p3@HEY1!0.38!1.60!HEY1;;chr10:22292613..22292674,-!p1@DNAJC1!0.37!61.64!DNAJC1;;chr6:41040678..41040722,+!p1@NFYA!0.37!42.43!NFYA;;chr10:38299546..38299686,+!p1@ZNF33A!0.37!30.42!ZNF33A;;chr19:56092195..56092248,-!p1@ZNF579!0.37!22.42!ZNF579;;chr1:202777592..202777616,-!p2@KDM5B!0.37!22.42!KDM5B;;chr7:149194756..149194839,-!p1@ZNF746!0.37!16.01!ZNF746;;chr19:57106647..57106686,+!p1@ZNF71!0.37!13.61!ZNF71;;chr19:58962974..58963001,+!p1@ZNF324B!0.37!8.81!ZNF324B;;chr10:35415882..35415941,+!p4@CREM!0.37!8.81!CREM;;chr12:104531785..104531812,-!p3@NFYB!0.37!4.80!NFYB;;chr18:32821037..32821057,+!p2@ZNF397!0.37!4.00!ZNF397;;chr19:2841497..2841523,+!p2@ZNF555!0.37!3.20!ZNF555;;chr1:33004734..33004807,+!p2@ZBTB8A!0.37!3.20!ZBTB8A;;chr19:59030961..59030974,-!p4@ZBTB45!0.37!1.60!ZBTB45;;chr18:32924372..32924430,-!p1@ZNF24!0.36!63.25!ZNF24;;chr4:467892..467963,-!p1@ABCA11P,p1@ZNF721!0.36!52.04!ZNF721;;chr19:58331088..58331106,+!p1@ZNF587!0.36!28.82!ZNF587;;chr2:85198369..85198483,+!p2@KCMF1!0.36!24.02!KCMF1;;chr19:40562072..40562143,-!p1@ZNF780B!0.36!18.41!ZNF780B;;chrX:129402866..129402880,-!p1@ZNF280C!0.36!11.21!ZNF280C;;chr7:148581360..148581425,-!p1@EZH2!0.36!9.61!EZH2;;chr5:72744594..72744609,-!p1@FOXD1!0.36!8.81!FOXD1;;chrX:106960180..106960197,-!p2@TSC22D3!0.36!7.21!TSC22D3;;chr1:161015676..161015694,-!p3@USF1!0.36!7.21!USF1;;chr19:44455368..44455396,+!p1@ZNF221!0.36!6.40!ZNF221;;chr7:148581327..148581347,-!p2@EZH2!0.36!6.40!EZH2;;chr19:52674853..52674892,-!p2@ZNF836!0.36!4.80!ZNF836;;chr22:20748456..20748488,+!p2@ZNF74!0.36!4.80!ZNF74;;chr16:8962544..8962584,-!p2@CARHSP1!0.36!4.00!CARHSP1;;chr11:695215..695231,-!p2@DEAF1!0.36!3.20!DEAF1;;chr1:151253991..151254031,+!p2@ZNF687!0.36!3.20!ZNF687;;chr19:52772821..52772828,+!p2@ZNF766!0.36!2.40!ZNF766;;chr17:41622765..41622821,-!p2@ETV4!0.36!2.40!ETV4;;chr15:35280863..35280908,-!p3@ZNF770!0.36!1.60!ZNF770;;chr19:12551849..12551868,-!p4@ZNF443!0.36!1.60!ZNF443;;chr8:73921085..73921125,+!p1@TERF1!0.35!56.84!TERF1;;chr2:113012592..113012671,-!p1@ZC3H8!0.35!34.42!ZC3H8;;chr12:50479109..50479146,+!p2@SMARCD1!0.35!34.42!SMARCD1;;chr12:133657477..133657529,+!p1@ZNF140!0.35!15.21!ZNF140;;chr12:498695..498748,-!p2@KDM5A!0.35!12.81!KDM5A;;chr1:249153268..249153298,-!p1@ZNF692!0.35!10.41!ZNF692;;chr19:36545128..36545203,-!p1@THAP8!0.35!8.81!THAP8;;chr19:58071201..58071238,-!p1@ZNF550!0.35!6.40!ZNF550;;chr19:52391147..52391218,-!p1@ZNF577!0.35!5.60!ZNF577;;chr16:79633894..79633954,-!p3@MAF!0.35!3.20!MAF;;chr16:67596336..67596353,+!p4@CTCF!0.35!2.40!CTCF;;chr17:20492136..20492165,+!p1@MEIS3P2!0.35!2.40!MEIS3P2;;chr17:47492203..47492214,-!p3@PHB!0.35!2.40!PHB;;chr8:73921067..73921078,+!p3@TERF1!0.35!2.40!TERF1;;chr7:148844498..148844507,+!p6@ZNF398!0.35!1.60!ZNF398;;chr19:58193388..58193411,+!p2@ZNF551,p4@ZNF776!0.35!1.60!ZNF551;;chr1:235491168..235491187,-!p3@ARID4B!0.35!1.60!ARID4B;;chr10:44144240..44144252,-!p4@ZNF32!0.35!1.60!ZNF32;;chr2:178128578..178128597,-!p9@NFE2L2!0.35!1.60!NFE2L2;;chr18:45457192..45457278,-!p1@SMAD2!0.34!32.82!SMAD2;;chr19:36705998..36706021,+!p2@ZNF146!0.34!28.02!ZNF146;;chr22:30162924..30163005,-!p1@ZMAT5!0.34!24.02!ZMAT5;;chr18:77867139..77867176,+!p1@ADNP2!0.34!14.41!ADNP2;;chr16:89284104..89284150,+!p1@ZNF778!0.34!13.61!ZNF778;;chr19:57999101..57999158,+!p1@ZNF419!0.34!12.81!ZNF419;;chr12:57400261..57400344,-!p1@ZBTB39!0.34!8.81!ZBTB39;;chr19:37960240..37960299,+!p1@ZNF570!0.34!6.40!ZNF570;;chr19:44331493..44331552,+!p1@ZNF283!0.34!6.40!ZNF283;;chr19:45251805..45251840,+!p4@BCL3!0.34!5.60!BCL3;;chr1:44679159..44679189,+!p2@DMAP1!0.34!4.80!DMAP1;;chr20:42543506..42543549,+!p2@TOX2!0.34!4.00!TOX2;;chr6:12012536..12012554,+!p4@HIVEP1!0.34!4.00!HIVEP1;;chr17:41322332..41322351,-!p4@BRCA1!0.34!4.00!BRCA1;;chr13:27998854..27998866,+!p3@GTF3A!0.34!3.20!GTF3A;;chr12:432372..432377,-!p3@KDM5A!0.34!2.40!KDM5A;;chr12:50479101..50479108,+!p3@SMARCD1!0.34!2.40!SMARCD1;;chr12:8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|sample_dev_stage=
|ffid_belonging_in_development=CL:0000134,UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
|sample_tissue=lung
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=49
|sample_ethnicity=B
|rna_rin=
|rna_od260/230=1.02000
|rna_od260/280=2.00000
|sample_cell_type=neuroendocrine cell
|sample_cell_line=NCI-H1385
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=non-small cell lung cancer
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=1.57464
|rna_concentration=0.05832
|sample_note=
|profile_hcage=CNhs12193,LSID845,release010,COMPLETED
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|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000066,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000118,UBERON:0000119,UBERON:0000170,UBERON:0000171,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0002048,UBERON:0002050,UBERON:0002224,UBERON:0002384,UBERON:0002532,UBERON:0003104,UBERON:0003258,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005153,UBERON:0005178,UBERON:0005181,UBERON:0005423,UBERON:0005597,UBERON:0005911,UBERON:0007026,UBERON:0008947,UBERON:0009142
|ancestors_in_disease_facet=DOID:0050687,DOID:1115,DOID:14566,DOID:162,DOID:305,DOID:4,DOID:7
|sample_description=
 
|fonse_cell_line=FF:0100353,FF:0100400,FF:0100453,FF:0101120
|fonse_cell_line=FF:0100353,FF:0100400,FF:0100453,FF:0101120
|fonse_cell_line_closure=FF:0100353,FF:0100400,FF:0100453,FF:0101120
|fonse_cell_line_closure=FF:0100353,FF:0100400,FF:0100453,FF:0101120
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.LQhCAGE/non-small%2520cell%2520lung%2520cancer%2520cell%2520line%253aNCI-H1385.CNhs12193.10730-110B1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.LQhCAGE/non-small%2520cell%2520lung%2520cancer%2520cell%2520line%253aNCI-H1385.CNhs12193.10730-110B1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.LQhCAGE/non-small%2520cell%2520lung%2520cancer%2520cell%2520line%253aNCI-H1385.CNhs12193.10730-110B1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.LQhCAGE/non-small%2520cell%2520lung%2520cancer%2520cell%2520line%253aNCI-H1385.CNhs12193.10730-110B1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.LQhCAGE/non-small%2520cell%2520lung%2520cancer%2520cell%2520line%253aNCI-H1385.CNhs12193.10730-110B1.hg38.nobarcode.ctss.bed.gz
|id=FF:10730-110B1
|is_a=CL:0002553;;EFO:0002091;;FF:0000210;;FF:0102553;;FF:0103764
|is_obsolete=
|library_id=CNhs12193
|library_id_phase_based=2:CNhs12193
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10730
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10730
|name=non-small cell lung cancer cell line:NCI-H1385
|namespace=FANTOM5
|part_of=
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|profile_hcage=CNhs12193,LSID845,release010,COMPLETED
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=110
|rna_catalog_number=
|rna_concentration=0.05832
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.02
|rna_od260/280=2
|rna_position=B1
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=110B1
|rna_weight_ug=1.57464
|sample_age=49
|sample_category=cell lines
|sample_cell_catalog=CRL-5867
|sample_cell_line=NCI-H1385
|sample_cell_lot=
|sample_cell_type=neuroendocrine cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=ATCC
|sample_description=
|sample_dev_stage=
|sample_disease=non-small cell lung cancer
|sample_donor(cell lot)=
|sample_ethnicity=B
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.72322988118889e-251!GO:0043226;organelle;5.11118987247851e-210!GO:0043229;intracellular organelle;3.00816135722952e-209!GO:0043227;membrane-bound organelle;2.30265878659896e-208!GO:0043231;intracellular membrane-bound organelle;2.30265878659896e-208!GO:0005737;cytoplasm;3.24311706490993e-172!GO:0044422;organelle part;9.42570129400566e-163!GO:0044446;intracellular organelle part;4.34664643069116e-161!GO:0044444;cytoplasmic part;5.41762278564785e-136!GO:0032991;macromolecular complex;6.91106461849105e-114!GO:0030529;ribonucleoprotein complex;5.15935539706413e-91!GO:0005739;mitochondrion;1.12775820952309e-88!GO:0044237;cellular metabolic process;5.11659530931505e-83!GO:0005634;nucleus;3.77928599248426e-80!GO:0044238;primary metabolic process;2.50457358994974e-77!GO:0044428;nuclear part;4.6105635382744e-74!GO:0043233;organelle lumen;1.19264629026081e-72!GO:0031974;membrane-enclosed lumen;1.19264629026081e-72!GO:0043170;macromolecule metabolic process;5.40817556691065e-69!GO:0003723;RNA binding;1.43699705008712e-67!GO:0044429;mitochondrial part;5.26103657275729e-62!GO:0043234;protein complex;1.2445269451686e-59!GO:0005840;ribosome;2.13400260014326e-56!GO:0031090;organelle membrane;3.67423918257268e-54!GO:0006396;RNA processing;2.02720348831638e-51!GO:0005515;protein binding;4.28798217170854e-51!GO:0031967;organelle envelope;2.18686224807367e-48!GO:0031975;envelope;5.70881785961357e-48!GO:0003735;structural constituent of ribosome;3.2522189907404e-47!GO:0006412;translation;3.26896806546383e-43!GO:0031981;nuclear lumen;5.74528089447988e-43!GO:0043283;biopolymer metabolic process;5.97190483376279e-43!GO:0016043;cellular component organization and biogenesis;4.15590156935712e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.92897451983801e-42!GO:0033279;ribosomal subunit;7.59774009272826e-42!GO:0015031;protein transport;4.03367290612591e-41!GO:0033036;macromolecule localization;1.3693196762564e-40!GO:0010467;gene expression;2.34103201579657e-39!GO:0016071;mRNA metabolic process;1.18586237337114e-38!GO:0005740;mitochondrial envelope;1.55727864486437e-38!GO:0045184;establishment of protein localization;1.3921710136834e-37!GO:0044249;cellular biosynthetic process;2.25071274119729e-37!GO:0008104;protein localization;2.25071274119729e-37!GO:0008380;RNA splicing;4.01786139199574e-37!GO:0009058;biosynthetic process;5.61653372689126e-37!GO:0031966;mitochondrial membrane;6.57143291123899e-36!GO:0006397;mRNA processing;9.4897358768752e-36!GO:0043228;non-membrane-bound organelle;9.79761150594751e-36!GO:0043232;intracellular non-membrane-bound organelle;9.79761150594751e-36!GO:0006259;DNA metabolic process;1.61981514498668e-35!GO:0019538;protein metabolic process;8.1016538105281e-35!GO:0019866;organelle inner membrane;1.05469011879313e-34!GO:0006996;organelle organization and biogenesis;7.72033253225644e-34!GO:0044267;cellular protein metabolic process;3.73146928540784e-33!GO:0005743;mitochondrial inner membrane;1.01951367280367e-32!GO:0046907;intracellular transport;3.27314968906866e-32!GO:0005829;cytosol;4.10706710332995e-32!GO:0044260;cellular macromolecule metabolic process;5.94504349448835e-32!GO:0009059;macromolecule biosynthetic process;8.10656742935777e-32!GO:0006119;oxidative phosphorylation;2.68975113535384e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.81760572130734e-29!GO:0065003;macromolecular complex assembly;1.71676501434735e-28!GO:0044455;mitochondrial membrane part;5.58170997163937e-28!GO:0031980;mitochondrial lumen;3.56456112912494e-27!GO:0005759;mitochondrial matrix;3.56456112912494e-27!GO:0051649;establishment of cellular localization;2.03939848626086e-26!GO:0005681;spliceosome;3.37998585750963e-26!GO:0051641;cellular localization;4.58663274319088e-26!GO:0005654;nucleoplasm;6.70720357018422e-26!GO:0003676;nucleic acid binding;8.95242394302577e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.27084868268055e-25!GO:0006886;intracellular protein transport;6.80285553677858e-25!GO:0022607;cellular component assembly;9.82359288819087e-25!GO:0007049;cell cycle;2.25227590214573e-23!GO:0016462;pyrophosphatase activity;2.80888393986733e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.83564127132911e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;3.33432028102692e-23!GO:0006974;response to DNA damage stimulus;1.53985250207433e-22!GO:0015935;small ribosomal subunit;1.75077555808437e-22!GO:0017111;nucleoside-triphosphatase activity;2.10837946683697e-22!GO:0005694;chromosome;2.34270085694481e-22!GO:0005746;mitochondrial respiratory chain;3.49026748713949e-22!GO:0044445;cytosolic part;3.76973033963804e-22!GO:0000166;nucleotide binding;1.13559117055503e-21!GO:0044451;nucleoplasm part;6.85201410875789e-21!GO:0005761;mitochondrial ribosome;1.16383816448201e-20!GO:0000313;organellar ribosome;1.16383816448201e-20!GO:0015934;large ribosomal subunit;1.29859290326703e-20!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.79211398236864e-20!GO:0006457;protein folding;5.10631079478245e-20!GO:0044427;chromosomal part;5.75896978675139e-20!GO:0012505;endomembrane system;7.547666799199e-20!GO:0050136;NADH dehydrogenase (quinone) activity;1.19980913771003e-19!GO:0003954;NADH dehydrogenase activity;1.19980913771003e-19!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.19980913771003e-19!GO:0051276;chromosome organization and biogenesis;8.31069430486955e-19!GO:0006281;DNA repair;2.09453115344289e-18!GO:0016874;ligase activity;2.77362272759547e-18!GO:0042775;organelle ATP synthesis coupled electron transport;2.85491984078241e-18!GO:0042773;ATP synthesis coupled electron transport;2.85491984078241e-18!GO:0022402;cell cycle process;7.65823983307637e-18!GO:0006512;ubiquitin cycle;8.64953053856565e-18!GO:0051186;cofactor metabolic process;8.84280639282996e-18!GO:0030964;NADH dehydrogenase complex (quinone);1.48572214600569e-17!GO:0045271;respiratory chain complex I;1.48572214600569e-17!GO:0005747;mitochondrial respiratory chain complex I;1.48572214600569e-17!GO:0022618;protein-RNA complex assembly;1.64978816142208e-17!GO:0016070;RNA metabolic process;2.79106967599872e-17!GO:0000278;mitotic cell cycle;5.96781947683482e-17!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.96781947683482e-17!GO:0005730;nucleolus;6.53489123420412e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;2.28237571573728e-16!GO:0016887;ATPase activity;6.5718818042233e-16!GO:0006323;DNA packaging;1.17579291249482e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.19590568343621e-15!GO:0042623;ATPase activity, coupled;1.69551032089606e-15!GO:0000087;M phase of mitotic cell cycle;7.02430094238305e-15!GO:0032553;ribonucleotide binding;1.12468605953457e-14!GO:0032555;purine ribonucleotide binding;1.12468605953457e-14!GO:0007067;mitosis;1.53189054887067e-14!GO:0022403;cell cycle phase;1.59428393216078e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;2.87817453974707e-14!GO:0000375;RNA splicing, via transesterification reactions;2.87817453974707e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.87817453974707e-14!GO:0017076;purine nucleotide binding;3.64739580365162e-14!GO:0044265;cellular macromolecule catabolic process;3.90398975713366e-14!GO:0051082;unfolded protein binding;4.5881595745365e-14!GO:0006333;chromatin assembly or disassembly;5.41380067079818e-14!GO:0009055;electron carrier activity;6.26500518116239e-14!GO:0009719;response to endogenous stimulus;8.16203545086881e-14!GO:0000502;proteasome complex (sensu Eukaryota);8.49229870958169e-14!GO:0008135;translation factor activity, nucleic acid binding;9.35267826669112e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;9.78514562507565e-14!GO:0019941;modification-dependent protein catabolic process;1.57439195555601e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.57439195555601e-13!GO:0006732;coenzyme metabolic process;1.79220844497046e-13!GO:0051301;cell division;2.14244148076099e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.3360866252313e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.37990178101654e-13!GO:0044257;cellular protein catabolic process;2.67154514517356e-13!GO:0016192;vesicle-mediated transport;2.86405212028279e-13!GO:0000279;M phase;3.27178563730188e-13!GO:0005794;Golgi apparatus;3.50485144892963e-13!GO:0065004;protein-DNA complex assembly;5.5311646213677e-13!GO:0044248;cellular catabolic process;6.45581550054884e-13!GO:0006260;DNA replication;1.16809333482446e-12!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.58656613367718e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.15260031040648e-12!GO:0000785;chromatin;3.13068537667596e-12!GO:0031965;nuclear membrane;3.13068537667596e-12!GO:0015630;microtubule cytoskeleton;5.58029709678319e-12!GO:0042254;ribosome biogenesis and assembly;9.8012872930232e-12!GO:0032559;adenyl ribonucleotide binding;1.1233955937734e-11!GO:0016604;nuclear body;1.16758760611358e-11!GO:0006163;purine nucleotide metabolic process;1.16829448499381e-11!GO:0009259;ribonucleotide metabolic process;1.21502340582659e-11!GO:0005635;nuclear envelope;1.50829910610314e-11!GO:0009057;macromolecule catabolic process;1.64153356562748e-11!GO:0005524;ATP binding;1.74144500399961e-11!GO:0043412;biopolymer modification;2.99752000766079e-11!GO:0006605;protein targeting;3.20782664405456e-11!GO:0003743;translation initiation factor activity;3.60511809879437e-11!GO:0043285;biopolymer catabolic process;3.92222109391023e-11!GO:0019829;cation-transporting ATPase activity;4.24354583469783e-11!GO:0006334;nucleosome assembly;4.53372447698122e-11!GO:0030554;adenyl nucleotide binding;4.75751742706193e-11!GO:0008134;transcription factor binding;5.07565603322029e-11!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.08002074679523e-11!GO:0048770;pigment granule;5.3965185747871e-11!GO:0042470;melanosome;5.3965185747871e-11!GO:0044453;nuclear membrane part;6.43874063962174e-11!GO:0009150;purine ribonucleotide metabolic process;7.58817638002965e-11!GO:0006164;purine nucleotide biosynthetic process;7.83617890451256e-11!GO:0009141;nucleoside triphosphate metabolic process;1.4169825513248e-10!GO:0006413;translational initiation;1.47645806109138e-10!GO:0009199;ribonucleoside triphosphate metabolic process;1.61594573227042e-10!GO:0008565;protein transporter activity;1.84845911061788e-10!GO:0006399;tRNA metabolic process;1.87593380809859e-10!GO:0031497;chromatin assembly;1.96249516838268e-10!GO:0015986;ATP synthesis coupled proton transport;2.83598592813311e-10!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.83598592813311e-10!GO:0009260;ribonucleotide biosynthetic process;3.12612140866102e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.12963195249627e-10!GO:0009144;purine nucleoside triphosphate metabolic process;3.12963195249627e-10!GO:0045333;cellular respiration;3.3857800034895e-10!GO:0030163;protein catabolic process;4.12830019175701e-10!GO:0009142;nucleoside triphosphate biosynthetic process;5.04284214196836e-10!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.04284214196836e-10!GO:0004386;helicase activity;5.08506719063553e-10!GO:0009152;purine ribonucleotide biosynthetic process;5.14180782148348e-10!GO:0005643;nuclear pore;5.73525262539575e-10!GO:0008639;small protein conjugating enzyme activity;7.55016579836732e-10!GO:0048193;Golgi vesicle transport;8.52578372860832e-10!GO:0006446;regulation of translational initiation;9.44945878948403e-10!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.88832919299359e-10!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.88832919299359e-10!GO:0006464;protein modification process;1.0321994037764e-09!GO:0009060;aerobic respiration;1.12606829224478e-09!GO:0008026;ATP-dependent helicase activity;1.12773012301396e-09!GO:0015078;hydrogen ion transmembrane transporter activity;1.2203219522272e-09!GO:0051188;cofactor biosynthetic process;1.2427280318545e-09!GO:0004842;ubiquitin-protein ligase activity;1.36003775116415e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.70000025467086e-09!GO:0005783;endoplasmic reticulum;2.00760041141279e-09!GO:0046034;ATP metabolic process;2.0583998788351e-09!GO:0016568;chromatin modification;2.24126765991572e-09!GO:0016607;nuclear speck;2.32858285463107e-09!GO:0007005;mitochondrion organization and biogenesis;3.08351255963418e-09!GO:0031982;vesicle;3.24378511024976e-09!GO:0030532;small nuclear ribonucleoprotein complex;4.51852254187556e-09!GO:0006754;ATP biosynthetic process;5.0557254839818e-09!GO:0006753;nucleoside phosphate metabolic process;5.0557254839818e-09!GO:0044432;endoplasmic reticulum part;5.96794426531711e-09!GO:0019787;small conjugating protein ligase activity;5.96794426531711e-09!GO:0031988;membrane-bound vesicle;6.27567340436315e-09!GO:0031410;cytoplasmic vesicle;7.10226805966345e-09!GO:0043687;post-translational protein modification;7.91029576101373e-09!GO:0065002;intracellular protein transport across a membrane;9.29133866500901e-09!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.43774763647618e-09!GO:0043566;structure-specific DNA binding;9.89691874134232e-09!GO:0016023;cytoplasmic membrane-bound vesicle;1.09058416089898e-08!GO:0006403;RNA localization;1.45236764429232e-08!GO:0050657;nucleic acid transport;1.51577979433939e-08!GO:0051236;establishment of RNA localization;1.51577979433939e-08!GO:0050658;RNA transport;1.51577979433939e-08!GO:0006364;rRNA processing;1.70985737930878e-08!GO:0016072;rRNA metabolic process;1.93726825165223e-08!GO:0000775;chromosome, pericentric region;2.78008920310525e-08!GO:0016469;proton-transporting two-sector ATPase complex;3.05292498267589e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.42966045042538e-08!GO:0046930;pore complex;3.93919097280165e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.50863255806111e-08!GO:0016881;acid-amino acid ligase activity;4.72849855703626e-08!GO:0032446;protein modification by small protein conjugation;7.75577407328024e-08!GO:0005789;endoplasmic reticulum membrane;9.49849748379722e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.5868491939661e-08!GO:0000314;organellar small ribosomal subunit;1.21783296792021e-07!GO:0005763;mitochondrial small ribosomal subunit;1.21783296792021e-07!GO:0006913;nucleocytoplasmic transport;1.31717640773074e-07!GO:0003697;single-stranded DNA binding;1.48937810172215e-07!GO:0045259;proton-transporting ATP synthase complex;1.50322745296233e-07!GO:0006099;tricarboxylic acid cycle;1.5392958385e-07!GO:0046356;acetyl-CoA catabolic process;1.5392958385e-07!GO:0016567;protein ubiquitination;1.6484674748635e-07!GO:0005762;mitochondrial large ribosomal subunit;1.89043204920923e-07!GO:0000315;organellar large ribosomal subunit;1.89043204920923e-07!GO:0005874;microtubule;2.00257939002409e-07!GO:0006084;acetyl-CoA metabolic process;2.08842760008245e-07!GO:0051726;regulation of cell cycle;2.53025921164893e-07!GO:0051169;nuclear transport;2.53631373374097e-07!GO:0000245;spliceosome assembly;2.59727227581914e-07!GO:0000074;regulation of progression through cell cycle;2.6840938391152e-07!GO:0044431;Golgi apparatus part;2.73774453496152e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.80184454555787e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.86586140851923e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.86586140851923e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.86586140851923e-07!GO:0009108;coenzyme biosynthetic process;3.19322719669776e-07!GO:0043038;amino acid activation;4.6342703706921e-07!GO:0006418;tRNA aminoacylation for protein translation;4.6342703706921e-07!GO:0043039;tRNA aminoacylation;4.6342703706921e-07!GO:0016491;oxidoreductase activity;5.84626082392791e-07!GO:0009117;nucleotide metabolic process;7.02116485014289e-07!GO:0051028;mRNA transport;7.40945595831471e-07!GO:0005819;spindle;1.04348755553224e-06!GO:0051187;cofactor catabolic process;1.08213618848795e-06!GO:0003712;transcription cofactor activity;1.10682932039441e-06!GO:0006261;DNA-dependent DNA replication;1.16039325381487e-06!GO:0003899;DNA-directed RNA polymerase activity;1.24305942761842e-06!GO:0009109;coenzyme catabolic process;1.29677076923517e-06!GO:0005768;endosome;1.35859474289543e-06!GO:0009056;catabolic process;1.58212792883038e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.64935377859842e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.85143197712196e-06!GO:0015399;primary active transmembrane transporter activity;1.85143197712196e-06!GO:0006752;group transfer coenzyme metabolic process;1.87337522127904e-06!GO:0045045;secretory pathway;2.36997779829882e-06!GO:0016779;nucleotidyltransferase activity;3.11600548095777e-06!GO:0048475;coated membrane;3.70384641606919e-06!GO:0030117;membrane coat;3.70384641606919e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.82844822525709e-06!GO:0043623;cellular protein complex assembly;5.70358756333873e-06!GO:0000786;nucleosome;6.58122228904443e-06!GO:0000139;Golgi membrane;7.52761170081821e-06!GO:0044440;endosomal part;8.50091934437232e-06!GO:0010008;endosome membrane;8.50091934437232e-06!GO:0005793;ER-Golgi intermediate compartment;1.11120417194942e-05!GO:0006613;cotranslational protein targeting to membrane;1.14736867747963e-05!GO:0017038;protein import;1.18053309178152e-05!GO:0015631;tubulin binding;1.27438214711216e-05!GO:0006366;transcription from RNA polymerase II promoter;1.57677848257412e-05!GO:0000151;ubiquitin ligase complex;1.65904062897904e-05!GO:0005770;late endosome;1.71797540445926e-05!GO:0006091;generation of precursor metabolites and energy;1.82386271212267e-05!GO:0007017;microtubule-based process;1.97329454732919e-05!GO:0016740;transferase activity;1.99697422792371e-05!GO:0016787;hydrolase activity;2.00136416570413e-05!GO:0030120;vesicle coat;2.38689335399885e-05!GO:0030662;coated vesicle membrane;2.38689335399885e-05!GO:0003924;GTPase activity;2.43419109394273e-05!GO:0006461;protein complex assembly;2.78506589851949e-05!GO:0045454;cell redox homeostasis;2.84361454786133e-05!GO:0006793;phosphorus metabolic process;3.2452531837546e-05!GO:0006796;phosphate metabolic process;3.2452531837546e-05!GO:0005813;centrosome;3.39563052339591e-05!GO:0008654;phospholipid biosynthetic process;3.51602981780225e-05!GO:0008094;DNA-dependent ATPase activity;3.58312596102658e-05!GO:0043021;ribonucleoprotein binding;3.771661705453e-05!GO:0007051;spindle organization and biogenesis;3.79315818085739e-05!GO:0006818;hydrogen transport;3.89902390250174e-05!GO:0000776;kinetochore;4.41828006158654e-05!GO:0048471;perinuclear region of cytoplasm;4.59100515130967e-05!GO:0003724;RNA helicase activity;4.65669264494579e-05!GO:0051168;nuclear export;4.92450326091349e-05!GO:0015992;proton transport;5.01191243583782e-05!GO:0022890;inorganic cation transmembrane transporter activity;5.33008693930069e-05!GO:0043681;protein import into mitochondrion;5.53750413942847e-05!GO:0043492;ATPase activity, coupled to movement of substances;5.93217060169086e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;6.07650240975494e-05!GO:0005815;microtubule organizing center;6.51813726787377e-05!GO:0005905;coated pit;6.67921554075282e-05!GO:0005753;mitochondrial proton-transporting ATP synthase complex;6.95123788704764e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;7.19555418556054e-05!GO:0031072;heat shock protein binding;7.45338799743001e-05!GO:0006888;ER to Golgi vesicle-mediated transport;8.33622718879344e-05!GO:0005525;GTP binding;0.000116919726140334!GO:0051427;hormone receptor binding;0.000116919726140334!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000118701132231753!GO:0016853;isomerase activity;0.00012873253200658!GO:0003684;damaged DNA binding;0.00012926579057653!GO:0006383;transcription from RNA polymerase III promoter;0.000141888465743075!GO:0006839;mitochondrial transport;0.000150395081163787!GO:0030880;RNA polymerase complex;0.000166872782979899!GO:0005657;replication fork;0.000168805036745165!GO:0008033;tRNA processing;0.000170307935726741!GO:0005839;proteasome core complex (sensu Eukaryota);0.000171687087954745!GO:0046474;glycerophospholipid biosynthetic process;0.000182327710349491!GO:0030135;coated vesicle;0.000197353627256346!GO:0012501;programmed cell death;0.000201799045101748!GO:0003682;chromatin binding;0.000208389752848159!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000211620532268018!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.000215526879617626!GO:0015002;heme-copper terminal oxidase activity;0.000215526879617626!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.000215526879617626!GO:0004129;cytochrome-c oxidase activity;0.000215526879617626!GO:0006302;double-strand break repair;0.000225109817951239!GO:0006626;protein targeting to mitochondrion;0.000238489980515462!GO:0035257;nuclear hormone receptor binding;0.000239838525161438!GO:0005741;mitochondrial outer membrane;0.000280645904868169!GO:0005798;Golgi-associated vesicle;0.000288423804262!GO:0009165;nucleotide biosynthetic process;0.000307138021751248!GO:0003690;double-stranded DNA binding;0.000321960999163521!GO:0003729;mRNA binding;0.000326652553735461!GO:0016363;nuclear matrix;0.00033720203842376!GO:0006915;apoptosis;0.000343160615519521!GO:0015980;energy derivation by oxidation of organic compounds;0.000349510966966517!GO:0051540;metal cluster binding;0.000377014799272339!GO:0051536;iron-sulfur cluster binding;0.000377014799272339!GO:0046489;phosphoinositide biosynthetic process;0.000392820517804621!GO:0005667;transcription factor complex;0.000419311197128145!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000430633174124973!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000436339182693526!GO:0000428;DNA-directed RNA polymerase complex;0.000436339182693526!GO:0032940;secretion by cell;0.000439378178887725!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000465963803390182!GO:0007006;mitochondrial membrane organization and biogenesis;0.000466647512222021!GO:0004576;oligosaccharyl transferase activity;0.000469042240299036!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000475531310999826!GO:0031968;organelle outer membrane;0.000478754196801278!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000529387362985701!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000529387362985701!GO:0016564;transcription repressor activity;0.000529387362985701!GO:0006612;protein targeting to membrane;0.00055644654197674!GO:0008250;oligosaccharyl transferase complex;0.000562591215087893!GO:0008017;microtubule binding;0.000562591215087893!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000562591215087893!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000562591215087893!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000562591215087893!GO:0008186;RNA-dependent ATPase activity;0.000574123617956681!GO:0019867;outer membrane;0.000584764915221743!GO:0051920;peroxiredoxin activity;0.000585882681839571!GO:0004298;threonine endopeptidase activity;0.000622819457524316!GO:0030118;clathrin coat;0.000688928267721181!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000713865669747389!GO:0032561;guanyl ribonucleotide binding;0.000716498829841517!GO:0019001;guanyl nucleotide binding;0.000716498829841517!GO:0051329;interphase of mitotic cell cycle;0.0007252170635331!GO:0005773;vacuole;0.000739957116038491!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000766384579527677!GO:0046467;membrane lipid biosynthetic process;0.000791072921466255!GO:0051087;chaperone binding;0.00079657100688579!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000808800517206301!GO:0051287;NAD binding;0.000832316119792427!GO:0008219;cell death;0.000832790311861261!GO:0016265;death;0.000832790311861261!GO:0048487;beta-tubulin binding;0.000834675333304487!GO:0006310;DNA recombination;0.000849440723520239!GO:0008168;methyltransferase activity;0.000919588674073216!GO:0016859;cis-trans isomerase activity;0.000953646744609271!GO:0008287;protein serine/threonine phosphatase complex;0.000963491997625973!GO:0016251;general RNA polymerase II transcription factor activity;0.000967649480179584!GO:0009892;negative regulation of metabolic process;0.000975766670965262!GO:0031324;negative regulation of cellular metabolic process;0.000978518155677481!GO:0031902;late endosome membrane;0.00100284944825371!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00100379790294956!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00101715818854356!GO:0005885;Arp2/3 protein complex;0.00102918831904107!GO:0003714;transcription corepressor activity;0.00107829822205319!GO:0016310;phosphorylation;0.00119703719651448!GO:0008180;signalosome;0.00121530745976482!GO:0048500;signal recognition particle;0.00123702784780657!GO:0044452;nucleolar part;0.00125918928780445!GO:0003678;DNA helicase activity;0.00126866165854603!GO:0051325;interphase;0.00131665081297831!GO:0000059;protein import into nucleus, docking;0.00131750198522482!GO:0016741;transferase activity, transferring one-carbon groups;0.0013319853450278!GO:0004004;ATP-dependent RNA helicase activity;0.00143829627075387!GO:0030867;rough endoplasmic reticulum membrane;0.00143829627075387!GO:0005684;U2-dependent spliceosome;0.00151223121976603!GO:0016126;sterol biosynthetic process;0.00159705346799984!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00160465848592033!GO:0006414;translational elongation;0.00162310164967302!GO:0000075;cell cycle checkpoint;0.00162821216124848!GO:0051246;regulation of protein metabolic process;0.00178338651621306!GO:0050662;coenzyme binding;0.00184541212283992!GO:0019752;carboxylic acid metabolic process;0.00187825992328006!GO:0005876;spindle microtubule;0.00193472569031032!GO:0051789;response to protein stimulus;0.00203243158499133!GO:0006986;response to unfolded protein;0.00203243158499133!GO:0018196;peptidyl-asparagine modification;0.00212303557479048!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00212303557479048!GO:0008312;7S RNA binding;0.00217103290946152!GO:0007059;chromosome segregation;0.00223063630288738!GO:0005758;mitochondrial intermembrane space;0.00223619831568255!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00223804471084825!GO:0006082;organic acid metabolic process;0.00242878961948778!GO:0006611;protein export from nucleus;0.00247939055456479!GO:0033116;ER-Golgi intermediate compartment membrane;0.00252266472025456!GO:0006405;RNA export from nucleus;0.00253765524167405!GO:0043069;negative regulation of programmed cell death;0.00280468356486738!GO:0009116;nucleoside metabolic process;0.00292273486835261!GO:0006505;GPI anchor metabolic process;0.00292547590828284!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00307740911946962!GO:0006891;intra-Golgi vesicle-mediated transport;0.0031314421375528!GO:0031970;organelle envelope lumen;0.00326451871408754!GO:0006506;GPI anchor biosynthetic process;0.00326451871408754!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00332703065958039!GO:0045047;protein targeting to ER;0.00332703065958039!GO:0006778;porphyrin metabolic process;0.00341931208464812!GO:0033013;tetrapyrrole metabolic process;0.00341931208464812!GO:0006606;protein import into nucleus;0.00343485284082176!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00354184595676104!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00354889394502582!GO:0003711;transcription elongation regulator activity;0.00357147591019421!GO:0051539;4 iron, 4 sulfur cluster binding;0.00369018343500437!GO:0005875;microtubule associated complex;0.00369018343500437!GO:0008610;lipid biosynthetic process;0.00371319330220463!GO:0005048;signal sequence binding;0.00396615092914031!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00402641684152465!GO:0051170;nuclear import;0.00403216693102021!GO:0044433;cytoplasmic vesicle part;0.00412816228288435!GO:0003713;transcription coactivator activity;0.00423052345032735!GO:0006352;transcription initiation;0.00438162527278916!GO:0051052;regulation of DNA metabolic process;0.00438162527278916!GO:0012506;vesicle membrane;0.0044028228529053!GO:0048523;negative regulation of cellular process;0.00474783497233875!GO:0022406;membrane docking;0.00478096745647092!GO:0048278;vesicle docking;0.00478096745647092!GO:0005869;dynactin complex;0.00478096745647092!GO:0045786;negative regulation of progression through cell cycle;0.00493689856850236!GO:0032508;DNA duplex unwinding;0.00496732276111168!GO:0032392;DNA geometric change;0.00496732276111168!GO:0016481;negative regulation of transcription;0.00498425549202527!GO:0006007;glucose catabolic process;0.00508012992173328!GO:0006338;chromatin remodeling;0.00513234898174383!GO:0030176;integral to endoplasmic reticulum membrane;0.00514545335958103!GO:0030133;transport vesicle;0.00514545335958103!GO:0035258;steroid hormone receptor binding;0.00522517647605161!GO:0006779;porphyrin biosynthetic process;0.00544139931367483!GO:0033014;tetrapyrrole biosynthetic process;0.00544139931367483!GO:0043066;negative regulation of apoptosis;0.00567180415336714!GO:0006695;cholesterol biosynthetic process;0.00575963093700079!GO:0030503;regulation of cell redox homeostasis;0.00592427372722557!GO:0004860;protein kinase inhibitor activity;0.00597742952782844!GO:0000323;lytic vacuole;0.00624001140842867!GO:0005764;lysosome;0.00624001140842867!GO:0008022;protein C-terminus binding;0.00624458070816862!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0063834887033668!GO:0005637;nuclear inner membrane;0.00645565464828478!GO:0006284;base-excision repair;0.00658236497798367!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00670005419484635!GO:0016311;dephosphorylation;0.00679433870569621!GO:0030521;androgen receptor signaling pathway;0.00701169453628681!GO:0006904;vesicle docking during exocytosis;0.00718703471675503!GO:0046483;heterocycle metabolic process;0.00730296556116428!GO:0006916;anti-apoptosis;0.00740933808022797!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00755362811493959!GO:0019222;regulation of metabolic process;0.00756160339559179!GO:0016272;prefoldin complex;0.00759103018772705!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0077211059855307!GO:0004527;exonuclease activity;0.0082419225303122!GO:0019887;protein kinase regulator activity;0.00842085392539244!GO:0043433;negative regulation of transcription factor activity;0.00852891788555615!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.00877530616446499!GO:0043130;ubiquitin binding;0.00910517456324226!GO:0032182;small conjugating protein binding;0.00910517456324226!GO:0007010;cytoskeleton organization and biogenesis;0.00945319285053547!GO:0047006;20-alpha-hydroxysteroid dehydrogenase activity;0.00946407482621561!GO:0030125;clathrin vesicle coat;0.00954611090301652!GO:0030665;clathrin coated vesicle membrane;0.00954611090301652!GO:0006118;electron transport;0.0096785178401857!GO:0006268;DNA unwinding during replication;0.00977223948926406!GO:0000096;sulfur amino acid metabolic process;0.00982113697423789!GO:0030659;cytoplasmic vesicle membrane;0.010262236600126!GO:0008601;protein phosphatase type 2A regulator activity;0.0102883979511471!GO:0016615;malate dehydrogenase activity;0.0104199494202574!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0104633104251955!GO:0030137;COPI-coated vesicle;0.010464577797593!GO:0005832;chaperonin-containing T-complex;0.010464577797593!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0105191003600828!GO:0007052;mitotic spindle organization and biogenesis;0.0105208802775041!GO:0042802;identical protein binding;0.0105524316844229!GO:0031716;calcitonin receptor binding;0.0105939172726503!GO:0001984;vasodilation of artery during baroreceptor response to increased systemic arterial blood pressure;0.0105939172726503!GO:0008637;apoptotic mitochondrial changes;0.0106288514805763!GO:0030384;phosphoinositide metabolic process;0.0107561787479196!GO:0043067;regulation of programmed cell death;0.0108620432924048!GO:0000228;nuclear chromosome;0.011035031879747!GO:0000159;protein phosphatase type 2A complex;0.0113788551987133!GO:0006650;glycerophospholipid metabolic process;0.0116347995548159!GO:0008139;nuclear localization sequence binding;0.0117667794220473!GO:0032259;methylation;0.0119727733540916!GO:0050811;GABA receptor binding;0.01207663523493!GO:0004448;isocitrate dehydrogenase activity;0.0121283848940947!GO:0030496;midbody;0.0124487219175015!GO:0046128;purine ribonucleoside metabolic process;0.0127299740750884!GO:0042278;purine nucleoside metabolic process;0.0127299740750884!GO:0047017;prostaglandin-F synthase activity;0.0128398499439223!GO:0005769;early endosome;0.0133315538327836!GO:0007021;tubulin folding;0.013782785554744!GO:0003746;translation elongation factor activity;0.0138193094094089!GO:0042168;heme metabolic process;0.0139949244384993!GO:0006749;glutathione metabolic process;0.0141544107849481!GO:0042981;regulation of apoptosis;0.0144058157540425!GO:0006301;postreplication repair;0.0145990601889999!GO:0000049;tRNA binding;0.0148060365905216!GO:0030663;COPI coated vesicle membrane;0.0148060365905216!GO:0030126;COPI vesicle coat;0.0148060365905216!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0149558657305911!GO:0006497;protein amino acid lipidation;0.0152933662314384!GO:0042769;DNA damage response, detection of DNA damage;0.0156473866481191!GO:0042158;lipoprotein biosynthetic process;0.0156473866481191!GO:0016584;nucleosome positioning;0.0161241333573251!GO:0019207;kinase regulator activity;0.016125236972173!GO:0031124;mRNA 3'-end processing;0.0163133815523887!GO:0006144;purine base metabolic process;0.0164198434021387!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0164342151883223!GO:0004518;nuclease activity;0.0164849869174062!GO:0046365;monosaccharide catabolic process;0.0166480044798016!GO:0016585;chromatin remodeling complex;0.0168380821248644!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0169231594570904!GO:0051881;regulation of mitochondrial membrane potential;0.0169244657246934!GO:0050794;regulation of cellular process;0.0173897480335998!GO:0046164;alcohol catabolic process;0.0179849412211309!GO:0030658;transport vesicle membrane;0.0181022909061605!GO:0005754;mitochondrial proton-transporting ATP synthase, catalytic core;0.0181022909061605!GO:0000275;mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);0.0181022909061605!GO:0045267;proton-transporting ATP synthase, catalytic core;0.0181022909061605!GO:0007093;mitotic cell cycle checkpoint;0.0186537877503188!GO:0004674;protein serine/threonine kinase activity;0.0193996798878963!GO:0043022;ribosome binding;0.0194736926400599!GO:0006595;polyamine metabolic process;0.0194736926400599!GO:0048519;negative regulation of biological process;0.019812573236712!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0199988869033036!GO:0045039;protein import into mitochondrial inner membrane;0.0199988869033036!GO:0008320;protein transmembrane transporter activity;0.0199988869033036!GO:0000082;G1/S transition of mitotic cell cycle;0.0200426027912139!GO:0048245;eosinophil chemotaxis;0.02015844011525!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0206537521652731!GO:0010257;NADH dehydrogenase complex assembly;0.0206537521652731!GO:0033108;mitochondrial respiratory chain complex assembly;0.0206537521652731!GO:0030136;clathrin-coated vesicle;0.020825032332783!GO:0007088;regulation of mitosis;0.0211792689583893!GO:0016563;transcription activator activity;0.0213927910906458!GO:0016791;phosphoric monoester hydrolase activity;0.0216501155385691!GO:0048037;cofactor binding;0.0217263570818567!GO:0005774;vacuolar membrane;0.0217901325174773!GO:0030508;thiol-disulfide exchange intermediate activity;0.0218161007144517!GO:0022884;macromolecule transmembrane transporter activity;0.0221883853594559!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0221883853594559!GO:0000725;recombinational repair;0.0222260495999295!GO:0000724;double-strand break repair via homologous recombination;0.0222260495999295!GO:0000209;protein polyubiquitination;0.0223224910642357!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0227627983448327!GO:0006783;heme biosynthetic process;0.0227627983448327!GO:0006096;glycolysis;0.0227627983448327!GO:0006108;malate metabolic process;0.0230060236503127!GO:0006541;glutamine metabolic process;0.0233509394988344!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0245306445444977!GO:0016044;membrane organization and biogenesis;0.024618817892155!GO:0006350;transcription;0.0246519971575503!GO:0007018;microtubule-based movement;0.0246519971575503!GO:0043414;biopolymer methylation;0.0248383342337134!GO:0000287;magnesium ion binding;0.0248656928870485!GO:0019210;kinase inhibitor activity;0.0249815421863489!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0251437868550083!GO:0006367;transcription initiation from RNA polymerase II promoter;0.025164706236071!GO:0009408;response to heat;0.0252431311948722!GO:0019783;small conjugating protein-specific protease activity;0.0253163781930444!GO:0008276;protein methyltransferase activity;0.0258638509926963!GO:0006979;response to oxidative stress;0.0258638509926963!GO:0015036;disulfide oxidoreductase activity;0.0258638509926963!GO:0030518;steroid hormone receptor signaling pathway;0.0262955928449081!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.026729678876538!GO:0019320;hexose catabolic process;0.026729678876538!GO:0001836;release of cytochrome c from mitochondria;0.0274551048140175!GO:0008538;proteasome activator activity;0.0275350858399397!GO:0004003;ATP-dependent DNA helicase activity;0.0281708437825616!GO:0000152;nuclear ubiquitin ligase complex;0.0282724324808387!GO:0004843;ubiquitin-specific protease activity;0.0283593430889157!GO:0030119;AP-type membrane coat adaptor complex;0.0283593430889157!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0287938537521598!GO:0003923;GPI-anchor transamidase activity;0.028981108635968!GO:0016255;attachment of GPI anchor to protein;0.028981108635968!GO:0042765;GPI-anchor transamidase complex;0.028981108635968!GO:0000792;heterochromatin;0.0292730139230328!GO:0004722;protein serine/threonine phosphatase activity;0.0296792101749511!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0299450970495801!GO:0006378;mRNA polyadenylation;0.030806068369197!GO:0050681;androgen receptor binding;0.031087930620258!GO:0008536;Ran GTPase binding;0.0311916774283872!GO:0004532;exoribonuclease activity;0.0317787545245031!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0317787545245031!GO:0007050;cell cycle arrest;0.0318999357899689!GO:0016407;acetyltransferase activity;0.032066920568006!GO:0031123;RNA 3'-end processing;0.0324439643089362!GO:0000118;histone deacetylase complex;0.0326507198761072!GO:0005784;translocon complex;0.0327249735526906!GO:0035267;NuA4 histone acetyltransferase complex;0.0330472939723314!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0335867761527817!GO:0005791;rough endoplasmic reticulum;0.0341103350400377!GO:0006467;protein thiol-disulfide exchange;0.0343710281609484!GO:0016790;thiolester hydrolase activity;0.0344053178060987!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0345599739011805!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0346999210393276!GO:0000910;cytokinesis;0.034811398221157!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0361900407234026!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0361900407234026!GO:0004721;phosphoprotein phosphatase activity;0.0363203269109396!GO:0043154;negative regulation of caspase activity;0.0368386307808945!GO:0009262;deoxyribonucleotide metabolic process;0.037418578320215!GO:0030660;Golgi-associated vesicle membrane;0.037477174029537!GO:0030131;clathrin adaptor complex;0.0378546767313859!GO:0043189;H4/H2A histone acetyltransferase complex;0.0380190406111952!GO:0007034;vacuolar transport;0.0384462131796172!GO:0004526;ribonuclease P activity;0.0384462131796172!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0385964657721597!GO:0004549;tRNA-specific ribonuclease activity;0.0390575014265524!GO:0016197;endosome transport;0.0393565086037197!GO:0004470;malic enzyme activity;0.0400353121124739!GO:0004300;enoyl-CoA hydratase activity;0.0403438181104796!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0412364390031876!GO:0044437;vacuolar part;0.0415376433847742!GO:0004221;ubiquitin thiolesterase activity;0.0415376433847742!GO:0009119;ribonucleoside metabolic process;0.0432039018957552!GO:0005680;anaphase-promoting complex;0.0433167023152435!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0435968610328105!GO:0006289;nucleotide-excision repair;0.0436121779051729!GO:0033673;negative regulation of kinase activity;0.0439219383951893!GO:0006469;negative regulation of protein kinase activity;0.0439219383951893!GO:0004523;ribonuclease H activity;0.0441956025407866!GO:0000726;non-recombinational repair;0.0446459314839246!GO:0044438;microbody part;0.0449699447395972!GO:0044439;peroxisomal part;0.0449699447395972!GO:0006470;protein amino acid dephosphorylation;0.0460413119493229!GO:0040029;regulation of gene expression, epigenetic;0.0466377994987158!GO:0042393;histone binding;0.0472641370660409!GO:0003756;protein disulfide isomerase activity;0.0476780617493113!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0476780617493113!GO:0032039;integrator complex;0.0476780617493113!GO:0009451;RNA modification;0.0477017734171255!GO:0000178;exosome (RNase complex);0.0478206609245779!GO:0016408;C-acyltransferase activity;0.0484257430291108!GO:0006220;pyrimidine nucleotide metabolic process;0.0484257430291108!GO:0031647;regulation of protein stability;0.0487505044486038!GO:0001671;ATPase activator activity;0.0491680991018166!GO:0007220;Notch receptor processing;0.0492362699627394!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0499461694263456
|sample_id=10730
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=lung
|top_motifs=NKX2-3_NKX2-5:3.0629160625;HOX{A6,A7,B6,B7}:2.81448490467;ARID5B:2.6103218205;LMO2:2.4436012704;PBX1:2.26194124692;JUN:2.18148507942;GFI1:2.14427860033;PAX8:1.99375746373;NRF1:1.9542384212;DBP:1.82059430702;ONECUT1,2:1.81967028189;ESRRA:1.811208754;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.71039856615;NFY{A,B,C}:1.70994822966;HAND1,2:1.65671808594;NR5A1,2:1.57510254382;ZEB1:1.54687596629;ELK1,4_GABP{A,B1}:1.54137769888;POU6F1:1.47788716487;SOX{8,9,10}:1.47601928256;ZNF143:1.45840316478;SNAI1..3:1.43440991675;NANOG:1.39932031849;RFX1:1.39363980576;PAX3,7:1.36352032969;ADNP_IRX_SIX_ZHX:1.30750748366;ALX1:1.28007280535;YY1:1.24392517599;ATF5_CREB3:1.18618112416;E2F1..5:1.16057491822;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.00946542812;PRRX1,2:0.978230830694;TGIF1:0.944268008608;FOXA2:0.944007589236;POU5F1:0.94073527611;FOX{I1,J2}:0.935259008293;MYOD1:0.928665865532;PDX1:0.92270073856;CUX2:0.914731458827;GFI1B:0.910971924837;LEF1_TCF7_TCF7L1,2:0.867387667124;ATF2:0.866388002515;RORA:0.852904227157;STAT1,3:0.837471111321;POU1F1:0.836288324817;NHLH1,2:0.825041568201;VSX1,2:0.809477912987;GATA6:0.800115793514;NFE2L2:0.737576824246;BREu{core}:0.708311581705;SOX17:0.700441497744;SOX2:0.698381851638;FOXQ1:0.688344954101;AHR_ARNT_ARNT2:0.669449799194;HOX{A4,D4}:0.657138287862;RFX2..5_RFXANK_RFXAP:0.656428271837;ZBTB6:0.631965165066;POU2F1..3:0.60136850691;MEF2{A,B,C,D}:0.596833041757;PAX6:0.596790860416;MYB:0.555420630889;NR3C1:0.548749648783;REST:0.530856619899;PAX5:0.508092121147;ZFP161:0.478380839348;PAX1,9:0.471213976882;FOX{F1,F2,J1}:0.445787230866;MED-1{core}:0.435863961929;MYFfamily:0.403369956016;FOX{D1,D2}:0.400332091721;XBP1:0.37732932935;GTF2I:0.372826555444;FOXL1:0.352231039861;ATF4:0.306130274697;NKX2-1,4:0.29170592608;MZF1:0.290974643164;OCT4_SOX2{dimer}:0.290210364678;NKX3-2:0.267920475489;NFE2:0.261823356924;PATZ1:0.251809332582;TEF:0.24863249092;ZIC1..3:0.235407538968;TBP:0.231741846205;TFAP2B:0.222348353883;TFDP1:0.174388681646;CRX:0.155759691182;NKX3-1:0.144333807691;ZNF423:0.138555210893;NKX6-1,2:0.12707856103;STAT5{A,B}:0.110579890502;CDC5L:0.107373558811;EGR1..3:0.0847101977856;CREB1:0.0782614023932;FOXN1:0.0758282708582;HLF:0.0650544516713;SREBF1,2:0.0448785624042;AR:0.0308430802251;SP1:0.00555698548342;FOSL2:-0.034103292247;HOX{A5,B5}:-0.0360821439306;ZNF148:-0.0716004443215;MTE{core}:-0.100298861469;MTF1:-0.121441313035;bHLH_family:-0.122679903421;NFIX:-0.139380990662;FOXD3:-0.148338853438;LHX3,4:-0.159174085224;TP53:-0.168368014929;HNF1A:-0.178606083373;CDX1,2,4:-0.192570648919;FOXM1:-0.248723371606;CEBPA,B_DDIT3:-0.298498078336;FOXP1:-0.300372402035;HIC1:-0.320668264812;MAZ:-0.32679035814;PAX4:-0.332372036425;BACH2:-0.335125168749;HSF1,2:-0.352535468345;RBPJ:-0.389528702809;HNF4A_NR2F1,2:-0.40015224369;AIRE:-0.416012034696;SOX5:-0.420283169286;ZBTB16:-0.430677280912;FOS_FOS{B,L1}_JUN{B,D}:-0.435253661585;PAX2:-0.437052744893;NANOG{mouse}:-0.44231376158;POU3F1..4:-0.442350793085;SPIB:-0.450042765224;MYBL2:-0.466307474941;DMAP1_NCOR{1,2}_SMARC:-0.466410523151;RREB1:-0.506311099102;KLF4:-0.506680664647;PITX1..3:-0.510252762298;GZF1:-0.520294065232;ATF6:-0.525662379419;HMGA1,2:-0.527368399169;MAFB:-0.550284381749;XCPE1{core}:-0.556092734426;HIF1A:-0.561306893726;NFKB1_REL_RELA:-0.600055945111;EVI1:-0.618629311037;TLX1..3_NFIC{dimer}:-0.631653455951;RUNX1..3:-0.647417312683;SPI1:-0.662891662325;EN1,2:-0.682326711522;NR6A1:-0.682956733679;FOXP3:-0.691488986965;TLX2:-0.69810899185;ELF1,2,4:-0.731751886258;TFAP4:-0.755556643553;TBX4,5:-0.764777129053;UFEwm:-0.800645008693;SMAD1..7,9:-0.800653679135;PRDM1:-0.806378807843;PPARG:-0.81088444462;NKX2-2,8:-0.838213606549;NFE2L1:-0.849745848367;IKZF1:-0.851531674111;T:-0.870998543906;HBP1_HMGB_SSRP1_UBTF:-0.891066828375;ETS1,2:-0.900729306776;HOXA9_MEIS1:-0.903015419107;STAT2,4,6:-0.909400788975;RXRA_VDR{dimer}:-0.91872589592;HES1:-0.932855413142;NFIL3:-0.943708453688;RXR{A,B,G}:-0.947017987361;EP300:-0.947841170496;HMX1:-0.984299392399;TFCP2:-1.00065255142;IKZF2:-1.00726960974;GCM1,2:-1.06746883014;ZNF238:-1.07196560607;ESR1:-1.07645408761;GTF2A1,2:-1.09279904714;NR1H4:-1.10089082424;TFAP2{A,C}:-1.14516716699;ZNF384:-1.22930935345;FOXO1,3,4:-1.24845920354;TAL1_TCF{3,4,12}:-1.27806448132;TEAD1:-1.3292766982;GATA4:-1.33689681694;GLI1..3:-1.38661340234;NFATC1..3:-1.39275052633;EBF1:-1.45431178612;IRF1,2:-1.47515075591;TOPORS:-1.47561873954;IRF7:-1.51726756887;BPTF:-1.60930882027;ALX4:-1.75623026437;SRF:-1.91550752204;SPZ1:-2.07047517234
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10730-110B1;search_select_hide=table117:FF:10730-110B1
}}
}}

Latest revision as of 15:02, 3 June 2020

Name:non-small cell lung cancer cell line:NCI-H1385
Species:Human (Homo sapiens)
Library ID:CNhs12193
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexfemale
age49
cell typeneuroendocrine cell
cell lineNCI-H1385
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00006019
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12193 CAGE DRX007775 DRR008647
Accession ID Hg19

Library idBAMCTSS
CNhs12193 DRZ000072 DRZ001457
Accession ID Hg38

Library idBAMCTSS
CNhs12193 DRZ011422 DRZ012807
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0407
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.423
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0144
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.259
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.298
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.405
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.643
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.205
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial1.539
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.418
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12193

Jaspar motifP-value
MA0002.20.00522
MA0003.10.319
MA0004.10.917
MA0006.10.22
MA0007.10.124
MA0009.10.578
MA0014.10.597
MA0017.10.0519
MA0018.21.74867e-5
MA0019.10.877
MA0024.18.52742e-5
MA0025.10.00204
MA0027.10.84
MA0028.10.00749
MA0029.10.396
MA0030.10.111
MA0031.10.477
MA0035.20.26
MA0038.12.38732e-6
MA0039.20.341
MA0040.10.744
MA0041.10.34
MA0042.10.871
MA0043.10.00719
MA0046.10.405
MA0047.20.0128
MA0048.10.0585
MA0050.17.86532e-17
MA0051.13.54612e-8
MA0052.10.231
MA0055.10.295
MA0057.10.243
MA0058.10.553
MA0059.10.551
MA0060.14.17969e-20
MA0061.10.00649
MA0062.20.00359
MA0065.20.0162
MA0066.10.169
MA0067.10.625
MA0068.10.888
MA0069.10.545
MA0070.10.0172
MA0071.10.826
MA0072.10.188
MA0073.10.381
MA0074.10.131
MA0076.13.89119e-4
MA0077.10.232
MA0078.10.773
MA0079.20.742
MA0080.29.37168e-10
MA0081.10.268
MA0083.10.00315
MA0084.10.627
MA0087.10.566
MA0088.10.33
MA0090.10.00198
MA0091.10.162
MA0092.10.214
MA0093.10.65
MA0099.22.57262e-4
MA0100.10.128
MA0101.10.0115
MA0102.20.0311
MA0103.10.0072
MA0104.20.276
MA0105.10.00667
MA0106.10.309
MA0107.10.0116
MA0108.20.0481
MA0111.10.698
MA0112.20.00125
MA0113.10.143
MA0114.10.0977
MA0115.10.632
MA0116.10.00826
MA0117.10.306
MA0119.10.0399
MA0122.10.729
MA0124.10.473
MA0125.10.00544
MA0131.10.232
MA0135.10.707
MA0136.12.42471e-5
MA0137.20.852
MA0138.20.356
MA0139.10.867
MA0140.10.341
MA0141.10.673
MA0142.10.434
MA0143.10.72
MA0144.10.195
MA0145.10.202
MA0146.10.03
MA0147.10.448
MA0148.10.0631
MA0149.10.232
MA0150.10.777
MA0152.10.925
MA0153.10.52
MA0154.10.0249
MA0155.10.4
MA0156.10.0248
MA0157.10.979
MA0159.10.0472
MA0160.10.916
MA0162.10.0987
MA0163.16.38834e-5
MA0164.10.0851
MA0258.10.035
MA0259.10.284



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12193

Novel motifP-value
10.237
100.154
1000.425
1010.491
1020.27
1030.444
1040.684
1050.518
1066.41911e-5
1070.0191
1080.614
1090.112
110.125
1100.215
1110.0317
1120.116
1130.64
1140.0219
1150.376
1160.16
1170.0579
1180.322
1190.169
120.962
1200.739
1210.994
1220.184
1230.15
1240.572
1250.9
1260.1
1270.567
1280.0344
1290.966
130.0391
1300.316
1310.775
1320.567
1330.199
1340.468
1350.724
1360.493
1370.0792
1380.486
1390.0146
140.611
1400.685
1410.98
1420.945
1430.429
1440.256
1450.0446
1460.773
1470.804
1480.00247
1490.0755
150.201
1500.24
1510.235
1520.0232
1530.223
1540.79
1550.893
1560.742
1570.79
1580.905
1590.294
160.143
1600.155
1610.595
1620.19
1630.695
1640.0737
1650.199
1660.469
1670.192
1680.106
1690.00308
170.219
180.32
190.0383
20.679
200.438
210.035
220.116
230.0315
240.485
250.945
260.0132
270.662
280.74
290.273
30.125
300.93
310.747
320.00325
330.428
340.232
350.544
360.703
370.159
380.383
390.0679
40.533
400.176
410.465
420.907
430.0623
440.678
450.654
460.297
470.637
480.296
490.203
50.318
500.0492
510.628
520.054
530.542
540.274
550.125
560.867
570.489
580.482
590.0435
60.736
600.00613
610.0482
620.227
630.0145
640.649
650.192
660.117
670.961
680.734
690.333
70.499
700.0589
710.107
720.206
730.0556
740.649
750.249
760.262
770.137
780.0365
790.0388
80.129
800.639
810.232
820.147
830.714
840.608
850.0772
860.417
870.777
880.724
890.699
90.291
900.138
910.157
920.313
930.161
940.355
950.996
960.954
970.679
980.799
990.712



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12193


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002553 (lung fibroblast)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1115 (sarcoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0101120 (epithelial cell line sample)
0100460 (fibrosarcoma cell line sample)
0100762 (lung cancer cell line sample)
0102553 (non-small cell lung cancer cell line sample)
0103764 (NCI cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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