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(Created page with "{{f5samples |id=FF:14314-155D3 |name=Smooth Muscle Cells - Aortic, donor0 (nuclear fraction) |sample_id=14314 |rna_tube_id=155D3 |rna_box=155 |rna_position=D3 |sample_c...")
 
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{{f5samples
{{f5samples
|id=FF:14314-155D3
|DRA_sample_Accession=CAGE@SAMD00005133
|name=Smooth Muscle Cells - Aortic, donor0 (nuclear fraction)
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005133!sRNA-Seq@SAMD00005133
|sample_id=14314
|accession_numbers=CAGE;DRX008044;DRR008916;DRZ000341;DRZ001726;DRZ011691;DRZ013076
|rna_tube_id=155D3
|accession_numbers_RNASeq=RNA-Seq;DRX057106;DRR062865;DRZ007941!sRNA-Seq;DRX036987;DRR041353;DRZ006995
|rna_box=155
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009
|rna_position=D3
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539
|sample_cell_lot=lot:1441
|sample_cell_catalog=
|sample_company=Cell Applications
|rna_lot_number=
|rna_catalog_number=CA354-R10a
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=54 years old adult
|sample_tissue=aorta
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=54
|sample_ethnicity=A
|rna_rin=
|rna_od260/230=2.15000
|rna_od260/280=2.09000
|sample_cell_type=smooth muscle cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=nuclear RNA
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=57.21660
|rna_concentration=1.27148
|sample_note=
|profile_hcage=CNhs12402,,,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10015,,,
|profile_rnaseq=RDhi10006,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000359,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002539
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000947,UBERON:0001009,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001135,UBERON:0001637,UBERON:0001981,UBERON:0002036,UBERON:0002049,UBERON:0002050,UBERON:0002111,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003081,UBERON:0003082,UBERON:0003104,UBERON:0003509,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004178,UBERON:0004237,UBERON:0004290,UBERON:0004535,UBERON:0004537,UBERON:0004571,UBERON:0004572,UBERON:0004573,UBERON:0004695,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0006965,UBERON:0007500,UBERON:0007798,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000408,FF:0000350,FF:0000168,FF:0000406,FF:0000672
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr11:46299539..46299620,+!p2@CREB3L1!1.96!149.22!CREB3L1;;chr6:134210243..134210257,+!p1@TCF21!1.90!79.02!TCF21;;chr2:19558373..19558392,-!p1@OSR1!1.64!113.02!OSR1;;chr11:46299199..46299233,+!p1@CREB3L1!1.50!153.63!CREB3L1;;chr18:19749541..19749557,+!p1@GATA6!1.39!72.72!GATA6;;chr12:66218598..66218645,+!p2@HMGA2!1.31!88.15!HMGA2;;chr18:19749386..19749404,+!p2@GATA6!1.31!27.39!GATA6;;chrY:21906594..21906622,-!p1@KDM5D!1.30!18.89!KDM5D;;chr11:46299443..46299459,+!p4@CREB3L1!1.29!18.57!CREB3L1;;chr5:72743793..72743855,-!p4@FOXD1!1.22!18.26!FOXD1;;chr12:66218255..66218304,+!p3@HMGA2!1.21!40.30!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!1.20!68.00!FOXD1;;chr12:52445218..52445237,+!p1@NR4A1!1.19!180.70!NR4A1;;chr7:150946376..150946389,-!p6@SMARCD3!1.19!14.48!SMARCD3;;chr12:72056800..72056834,+!p1@THAP2!1.17!18.57!THAP2;;chr7:44143978..44143989,+!p2@AEBP1!1.15!24.24!AEBP1;;chr5:72744445..72744466,-!p2@FOXD1!1.14!21.41!FOXD1;;chr7:44143925..44143970,+!p1@AEBP1!1.13!276.72!AEBP1;;chr21:36260773..36260804,-!p7@RUNX1!1.13!17.00!RUNX1;;chr21:36260295..36260310,-!p3@RUNX1!1.12!19.83!RUNX1;;chr17:46126136..46126152,+!p1@NFE2L1!1.11!607.90!NFE2L1;;chr7:35293685..35293718,-!p1@TBX20!1.11!11.96!TBX20;;chr19:45971246..45971265,+!p1@FOSB!1.10!217.22!FOSB;;chr16:86544113..86544145,+!p1@FOXF1!1.09!14.17!FOXF1;;chr12:66218836..66218888,+!p1@HMGA2!1.08!104.52!HMGA2;;chr3:141087562..141087594,+!p12@ZBTB38!1.08!11.02!ZBTB38;;chr6:144329384..144329405,-!p1@PLAGL1!1.03!113.96!PLAGL1;;chr3:141087454..141087465,+!p19@ZBTB38!1.03!9.76!ZBTB38;;chr19:47523058..47523114,+!p1@NPAS1!1.02!9.44!NPAS1;;chr21:36260343..36260402,-!p6@RUNX1!1.01!15.11!RUNX1;;chr7:1577899..1577943,+!p3@MAFK!1.01!9.13!MAFK;;chr19:50432453..50432468,+!p1@ATF5!1.00!511.26!ATF5;;chr3:141087393..141087426,+!p3@ZBTB38!1.00!36.52!ZBTB38;;chr11:65686802..65686818,+!p6@DRAP1!0.99!15.43!DRAP1;;chr11:46299186..46299195,+!p3@CREB3L1!0.99!9.76!CREB3L1;;chr12:66218904..66218913,+!p11@HMGA2!0.98!8.50!HMGA2;;chr1:158979872..158979898,+!p3@IFI16!0.97!26.13!IFI16;;chr11:46316699..46316719,+!p10@CREB3L1!0.96!8.19!CREB3L1;;chr2:66662281..66662308,+!p1@MEIS1!0.95!28.02!MEIS1;;chr7:137686552..137686564,-!p9@CREB3L2!0.95!11.96!CREB3L2;;chr6:10415276..10415341,-!p2@TFAP2A!0.95!9.76!TFAP2A;;chr12:66218923..66218934,+!p14@HMGA2!0.95!7.87!HMGA2;;chr3:25470156..25470227,+!p2@RARB!0.95!7.87!RARB;;chr4:174451370..174451387,-!p1@HAND2!0.93!7.56!HAND2;;chr14:62162258..62162269,+!p2@HIF1A!0.92!73.04!HIF1A;;chr6:10412600..10412637,-!p1@TFAP2A!0.92!12.59!TFAP2A;;chr12:66218378..66218401,+!p6@HMGA2!0.92!11.65!HMGA2;;chr8:55370487..55370503,+!p1@SOX17!0.92!7.24!SOX17;;chr1:170632250..170632277,+!p7@PRRX1!0.92!7.24!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.92!7.24!PRRX1;;chr10:63809106..63809127,+!p1@ARID5B!0.91!100.74!ARID5B;;chr1:170632285..170632309,+!p1@PRRX1!0.91!8.19!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!0.91!8.19!PRRX1;;chr19:13135582..13135600,+!p3@NFIX!0.90!6.93!NFIX;;chr11:65686732..65686756,+!p2@DRAP1!0.89!29.91!DRAP1;;chr8:106330656..106330684,+!p1@ZFPM2!0.89!18.57!ZFPM2;;chr7:44143997..44144008,+!p3@AEBP1!0.89!8.81!AEBP1;;chr5:321810..321877,+!p1@AHRR!0.88!22.04!AHRR;;chr7:137686763..137686784,-!p5@CREB3L2!0.88!11.65!CREB3L2;;chr17:46655704..46655718,-!p2@HOXB4!0.88!10.07!HOXB4;;chr11:65687362..65687436,+!p3@DRAP1!0.87!30.85!DRAP1;;chr2:102091566..102091581,-!p1@RFX8!0.86!6.30!RFX8;;chr4:26322673..26322684,+!p11@RBPJ!0.86!6.30!RBPJ;;chr12:124873357..124873401,-!p1@NCOR2!0.85!74.30!NCOR2;;chr19:52074502..52074587,+!p1@ZNF175!0.85!23.30!ZNF175;;chr3:114343768..114343822,-!p1@ZBTB20!0.84!27.39!ZBTB20;;chr4:26322267..26322334,+!p3@RBPJ!0.84!15.11!RBPJ;;chr15:42749722..42749739,-!p2@ZFP106!0.84!11.02!ZFP106;;chr15:57511609..57511651,+!p2@TCF12!0.84!10.39!TCF12;;chr11:34642612..34642646,+!p1@EHF!0.84!5.98!EHF;;chr3:141121820..141121838,+!p9@ZBTB38!0.84!5.98!ZBTB38;;chr7:150945754..150945789,-!p2@SMARCD3!0.83!18.89!SMARCD3;;chr2:121493425..121493474,+!p1@GLI2!0.83!13.22!GLI2;;chr19:13136130..13136165,+!p6@NFIX!0.83!7.87!NFIX;;chr9:35732647..35732678,+!p2@CREB3!0.82!33.68!CREB3;;chr19:9609272..9609297,-!p1@ZNF560!0.82!5.67!ZNF560;;chr2:185463247..185463263,+!p1@ZNF804A!0.81!10.07!ZNF804A;;chr12:26277817..26277863,-!p2@BHLHE41!0.81!7.56!BHLHE41;;chr1:170632959..170632987,+!p4@PRRX1!0.81!5.98!PRRX1;;chr11:46333934..46333963,+!p5@CREB3L1!0.80!5.35!CREB3L1;;chr9:16705069..16705086,-!p3@BNC2!0.80!5.35!BNC2;;chr15:60884706..60884743,-!p1@RORA!0.79!28.96!RORA;;chr2:200322654..200322707,-!p2@SATB2!0.79!7.87!SATB2;;chr1:170633348..170633399,+!p2@PRRX1!0.79!7.24!PRRX1;;chr3:170076314..170076334,+!p2@SKIL!0.79!6.93!SKIL;;chr10:77161504..77161530,-!p1@ZNF503!0.78!73.04!ZNF503;;chr17:46622070..46622109,-!p1@HOXB2!0.78!11.96!HOXB2;;chr17:46659728..46659749,-!p3@HOXB3!0.78!5.04!HOXB3;;chr19:54041669..54041697,+!p2@ZNF331!0.78!5.04!ZNF331;;chr19:54058073..54058088,+!p1@ZNF331!0.78!5.04!ZNF331;;chr1:170633058..170633084,+!p5@PRRX1!0.78!5.04!PRRX1;;chr21:36260325..36260341,-!p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LF1;;chr20:39946361..39946379,-!p2@ZHX3!0.39!5.98!ZHX3;;chr3:52001426..52001447,-!p3@PCBP4!0.39!5.67!PCBP4;;chr15:60884747..60884774,-!p3@RORA!0.39!4.72!RORA;;chr14:61191018..61191048,-!p1@SIX4!0.39!4.09!SIX4;;chr19:44331555..44331581,+!p2@ZNF283!0.39!4.09!ZNF283;;chr14:61191049..61191080,-!p2@SIX4!0.39!3.15!SIX4;;chr12:124827609..124827643,-!p9@NCOR2!0.39!2.52!NCOR2;;chr15:57210759..57210775,+!p7@TCF12!0.39!2.52!TCF12;;chr20:42136308..42136358,+!p2@L3MBTL1!0.39!2.20!L3MBTL;;chr12:133614119..133614136,+!p5@ZNF84!0.39!1.89!ZNF84;;chr2:191878874..191878938,-!p1@STAT1!0.38!116.80!STAT1;;chr12:57914286..57914304,-!p1@DDIT3!0.38!79.02!DDIT3;;chr10:21823128..21823216,+!p1@MLLT10!0.38!18.89!MLLT10;;chr10:38265517..38265591,-!p1@ZNF25!0.38!7.87!ZNF25;;chr7:17338324..17338341,+!p3@AHR!0.38!6.61!AHR;;chr16:1429627..1429662,-!p2@UNKL!0.38!5.67!UNKL;;chr19:58446721..58446779,-!p1@ZNF418!0.38!5.35!ZNF418;;chr19:59084872..59084920,-!p2@MZF1!0.38!5.04!MZF1;;chr16:1429674..1429703,-!p3@UNKL!0.38!2.83!UNKL;;chr2:85981222..85981259,+!p2@ATOH8!0.38!2.83!ATOH8;;chr4:81104895..81104920,+!p2@PRDM8!0.38!2.52!PRDM8;;chr15:96869114..96869160,+!p11@NR2F2!0.38!2.20!NR2F2;;chr3:141121369..141121392,+!p14@ZBTB38!0.38!1.89!ZBTB38;;chr3:183415558..183415649,+!p1@YEATS2!0.37!56.98!YEATS2;;chr6:33168427..33168457,-!p1@RXRB!0.37!46.59!RXRB;;chr15:57025675..57025718,-!p1@ZNF280D!0.37!45.33!ZNF280D;;chr5:92918894..92918912,+!p2@NR2F1!0.37!6.30!NR2F1;;chr9:2017063..2017144,+!p4@SMARCA2!0.37!5.98!SMARCA2;;chr8:22550982..22550999,-!p1@EGR3!0.37!5.35!EGR3;;chr6:45390025..45390076,+!p2@RUNX2!0.37!4.41!RUNX2;;chr20:45142154..45142227,-!p1@ZNF334!0.37!3.46!ZNF334;;chr18:56532100..56532130,+!p1@ZNF532!0.37!3.15!ZNF532;;chr6:106546808..106546833,+!p3@PRDM1!0.37!1.89!PRDM1;;chr7:14028488..14028516,-!p2@ETV1!0.37!1.57!ETV1;;chr15:37392534..37392562,-!p10@MEIS2!0.37!1.57!MEIS2;;chr1:59165724..59165751,-!p1@MYSM1!0.36!47.54!MYSM1;;chr7:17338266..17338282,+!p1@AHR!0.36!21.72!AHR;;chr5:139487363..139487444,+!p1@PURA!0.36!15.11!PURA;;chr9:4300050..4300118,-!p1@GLIS3!0.36!12.91!GLIS3;;chr16:4817129..4817198,-!p1@ZNF500!0.36!10.70!ZNF500;;chr7:14029283..14029311,-!p1@ETV1!0.36!10.39!ETV1;;chr8:146176199..146176272,-!p1@ZNF16!0.36!9.13!ZNF16;;chr3:44596679..44596726,+!p1@ZNF167!0.36!8.50!ZNF167;;chr19:12251144..12251181,-!p2@ZNF20!0.36!8.19!ZNF20;;chr19:44617538..44617598,+!p1@ZNF225!0.36!7.56!ZNF225;;chr19:11959532..11959593,+!p1@ZNF439!0.36!7.24!ZNF439;;chr16:2059754..2059777,-!p2@ZNF598!0.36!6.61!ZNF598;;chr19:44598534..44598559,+!p2@ZNF224!0.36!5.67!ZNF224;;chr9:115818951..115819011,-!p1@ZFP37!0.36!5.67!ZFP37;;chr19:52956798..52956843,+!p1@ZNF578!0.36!3.46!ZNF578;;chr19:12075844..12075880,+!p3@ZNF763!0.36!2.83!ZNF763;;chr17:20492136..20492165,+!p1@MEIS3P2!0.36!2.52!MEIS3P2;;chr19:31840438..31840470,-!p3@TSHZ3!0.36!1.89!TSHZ3;;chr19:56988864..56988924,-!p2@ZNF667!0.36!1.89!ZNF667;;chr20:44600785..44600794,-!p7@ZNF335!0.36!1.57!ZNF335;;chr1:168195229..168195294,+!p1@SFT2D2,p1@TBX19!0.35!91.61!TBX19;;chr17:4890919..4890985,-!p1@CAMTA2!0.35!18.57!CAMTA2;;chr14:74226747..74226779,-!p3@C14orf43!0.35!10.70!C14orf43;;chr1:14075865..14075896,+!p3@PRDM2!0.35!7.87!PRDM2;;chr12:26277956..26277980,-!p1@BHLHE41!0.35!6.61!BHLHE41;;chr4:95129061..95129085,+!p3@SMARCAD1!0.35!6.61!SMARCAD1;;chr8:128749984..128750033,+!p4@MYC!0.35!6.61!MYC;;chr8:28748099..28748141,+!p2@HMBOX1!0.35!5.67!HMBOX1;;chr19:58220517..58220583,-!p1@ZNF154!0.35!5.67!ZNF154;;chr4:47916613..47916640,-!p3@NFXL1!0.35!5.35!NFXL1;;chr2:46524474..46524491,+!p4@EPAS1!0.35!4.09!EPAS1;;chr19:13134457..13134462,+!p5@NFIX!0.35!2.83!NFIX;;chr3:178789993..178790049,-!p5@ZMAT3!0.35!2.20!ZMAT3;;chr4:26322373..26322393,+!p4@RBPJ!0.35!2.20!RBPJ;;chr6:28234822..28234836,+!p1@ZNF187!0.35!2.20!ZNF187;;chr9:110251836..110251887,-!p4@KLF4!0.35!1.89!KLF4;;chr16:4365715..4365746,+!p@chr16:4365715..4365746,+!0.35!1.89!GLIS2;;chr15:83953397..83953425,-!p1@BNC1!0.35!1.57!BNC1;;chr15:96869206..96869220,+!p21@NR2F2!0.35!1.26!NR2F2;;chr17:17740823..17740833,-!p8@SREBF1!0.35!1.26!SREBF1;;chr17:46131916..46131952,+!p7@NFE2L1!0.35!1.26!NFE2L1;;chr17:46132044..46132080,+!p4@NFE2L1!0.35!1.26!NFE2L1;;chr5:2751785..2751808,-!p2@IRX2!0.35!1.26!IRX2;;chr7:27169801..27169844,-!p2@HOXA4!0.35!1.26!HOXA4;;chr7:27170274..27170308,-!p3@HOXA4!0.35!1.26!HOXA4;;chr7:27170359..27170381,-!p1@HOXA4!0.35!1.26!HOXA4;;chr7:28449015..28449024,+!p6@CREB5!0.35!1.26!CREB5;;chr8:106330823..106330836,+!p3@ZFPM2!0.35!1.26!ZFPM2;;chr8:116681878..116681893,-!p15@TRPS1!0.35!1.26!TRPS1;;chr22:19748231..19748317,+!p1@TBX1!0.35!1.26!TBX1;;chr2:172949484..172949522,+!p1@DLX1!0.35!1.26!DLX1;;chr2:172967242..172967265,-!p2@DLX2!0.35!1.26!DLX2;;chr2:214014959..214015006,-!p4@IKZF2!0.35!1.26!IKZF2;;chr2:85981008..85981025,+!p7@ATOH8!0.35!1.26!ATOH8;;chr3:25469815..25469866,+!p3@RARB!0.35!1.26!RARB;;chr4:111558135..111558198,-!p2@PITX2!0.35!1.26!PITX2;;chr4:26323764..26323821,+!p15@RBPJ!0.35!1.26!RBPJ;;chr21:36262372..36262386,-!p29@RUNX1!0.35!1.26!RUNX1;;chr10:111967317..11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|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 42:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528nuclear%2520fraction%2529.CNhs12402.14314-155D3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528nuclear%2520fraction%2529.CNhs12402.14314-155D3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528nuclear%2520fraction%2529.CNhs12402.14314-155D3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528nuclear%2520fraction%2529.CNhs12402.14314-155D3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528nuclear%2520fraction%2529.CNhs12402.14314-155D3.hg38.nobarcode.ctss.bed.gz
|id=FF:14314-155D3
|is_a=EFO:0002091;;FF:0000672
|is_obsolete=
|library_id=CNhs12402
|library_id_phase_based=2:CNhs12402
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14314
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.GATCAG.14314
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14314
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.GATCAG.14314
|name=Smooth Muscle Cells - Aortic, donor0 (nuclear fraction)
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12402,LSID914,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10015,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=155
|rna_catalog_number=CA354-R10a
|rna_concentration=1.27148
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=
|rna_od260/230=2.15
|rna_od260/280=2.09
|rna_position=D3
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=155D3
|rna_weight_ug=57.2166
|rnaseq_library_id=RDhi10006!SRhi10015.GATCAG
|sample_age=54
|sample_category=fractionations and perturbations
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=lot:1441
|sample_cell_type=smooth muscle cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=54 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=A
|sample_experimental_condition=nuclear RNA
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.20296971958807e-254!GO:0005737;cytoplasm;1.00561816794003e-150!GO:0043231;intracellular membrane-bound organelle;3.94162356809454e-132!GO:0043227;membrane-bound organelle;8.57476090109573e-132!GO:0043226;organelle;8.03942532462746e-131!GO:0043229;intracellular organelle;1.09569796824084e-130!GO:0044444;cytoplasmic part;2.29905516750257e-124!GO:0044422;organelle part;3.75424167397792e-102!GO:0044446;intracellular organelle part;7.06636484457513e-101!GO:0005515;protein binding;1.15473489905409e-62!GO:0044238;primary metabolic process;2.29387853689166e-62!GO:0044237;cellular metabolic process;1.80044008957174e-58!GO:0032991;macromolecular complex;1.43453111075135e-56!GO:0043170;macromolecule metabolic process;4.77632497711624e-56!GO:0031090;organelle membrane;1.8874059882567e-55!GO:0043233;organelle lumen;1.96005389270134e-50!GO:0031974;membrane-enclosed lumen;1.96005389270134e-50!GO:0003723;RNA binding;2.72631284414638e-49!GO:0030529;ribonucleoprotein complex;5.36690453073272e-48!GO:0044428;nuclear part;7.14531773933511e-47!GO:0019538;protein metabolic process;2.70251006982307e-44!GO:0015031;protein transport;2.35118513881032e-39!GO:0033036;macromolecule localization;5.6192952212752e-39!GO:0044260;cellular macromolecule metabolic process;5.63165869566502e-39!GO:0044267;cellular protein metabolic process;3.21908710693133e-38!GO:0045184;establishment of protein localization;8.02441225444699e-37!GO:0008104;protein localization;5.4589748058297e-36!GO:0005783;endoplasmic reticulum;2.30570959447148e-35!GO:0016043;cellular component organization and biogenesis;6.60035837273803e-35!GO:0005739;mitochondrion;3.69434949229183e-34!GO:0005634;nucleus;1.38605261019067e-33!GO:0009058;biosynthetic process;1.99490914056669e-33!GO:0006396;RNA processing;8.35991084021609e-33!GO:0046907;intracellular transport;1.7104079926913e-32!GO:0006412;translation;4.54711655898387e-32!GO:0012505;endomembrane system;6.93779452689229e-31!GO:0009059;macromolecule biosynthetic process;4.9101714235892e-30!GO:0031981;nuclear lumen;1.94865040897445e-29!GO:0044432;endoplasmic reticulum part;4.80740283041238e-29!GO:0043234;protein complex;6.44023185709943e-29!GO:0016071;mRNA metabolic process;9.27078837871513e-28!GO:0005829;cytosol;2.07256534036542e-27!GO:0006886;intracellular protein transport;3.38643035667871e-27!GO:0044249;cellular biosynthetic process;1.84034858825439e-26!GO:0031967;organelle envelope;3.10186791661577e-26!GO:0005840;ribosome;3.19825648933952e-26!GO:0031975;envelope;6.11312732853856e-26!GO:0043283;biopolymer metabolic process;9.76663869934615e-25!GO:0005794;Golgi apparatus;1.46522097986287e-24!GO:0044429;mitochondrial part;2.80628125560796e-24!GO:0008380;RNA splicing;7.37472579589994e-24!GO:0006397;mRNA processing;1.54903074535683e-23!GO:0003735;structural constituent of ribosome;1.98530651834663e-23!GO:0033279;ribosomal subunit;6.14963353453442e-22!GO:0010467;gene expression;1.91051848949033e-21!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.69125474855995e-21!GO:0051649;establishment of cellular localization;2.3246124424454e-20!GO:0006457;protein folding;2.87441133857256e-20!GO:0051641;cellular localization;3.20509361311864e-20!GO:0005789;endoplasmic reticulum membrane;4.17428109093229e-20!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.30580307650535e-19!GO:0016462;pyrophosphatase activity;1.97612251672828e-19!GO:0048770;pigment granule;2.03794552758403e-19!GO:0042470;melanosome;2.03794552758403e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.38243262393801e-19!GO:0000166;nucleotide binding;3.04629051095952e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;3.15641341267746e-19!GO:0017111;nucleoside-triphosphatase activity;4.35164595194933e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.27279094270655e-18!GO:0065003;macromolecular complex assembly;1.87213255391793e-18!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.89733404133566e-18!GO:0005654;nucleoplasm;7.12939301573915e-18!GO:0022607;cellular component assembly;9.41794563577828e-17!GO:0006996;organelle organization and biogenesis;9.54321381170546e-17!GO:0005740;mitochondrial envelope;1.62198770903755e-16!GO:0048193;Golgi vesicle transport;2.51164839874556e-16!GO:0005681;spliceosome;5.99978283390719e-16!GO:0031966;mitochondrial membrane;8.46465876270149e-16!GO:0044445;cytosolic part;5.47540330762967e-15!GO:0044451;nucleoplasm part;6.56625468021988e-15!GO:0006119;oxidative phosphorylation;8.36674582040712e-15!GO:0005793;ER-Golgi intermediate compartment;8.97416154806177e-15!GO:0016192;vesicle-mediated transport;9.72037391175238e-15!GO:0019866;organelle inner membrane;1.31478400775245e-14!GO:0016874;ligase activity;1.59271134726636e-14!GO:0051082;unfolded protein binding;5.33794491787026e-14!GO:0008134;transcription factor binding;1.20446385819521e-13!GO:0017076;purine nucleotide binding;2.61203989714517e-13!GO:0005743;mitochondrial inner membrane;4.0250088538774e-13!GO:0006605;protein targeting;5.47441479949033e-13!GO:0032553;ribonucleotide binding;7.85335904608953e-13!GO:0032555;purine ribonucleotide binding;7.85335904608953e-13!GO:0044265;cellular macromolecule catabolic process;1.0036518806189e-12!GO:0043285;biopolymer catabolic process;2.56880993015307e-12!GO:0006512;ubiquitin cycle;4.62661797595176e-12!GO:0016887;ATPase activity;4.87595227690795e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;4.91468072342941e-12!GO:0008135;translation factor activity, nucleic acid binding;4.93199212492837e-12!GO:0005730;nucleolus;5.1803202449581e-12!GO:0009057;macromolecule catabolic process;6.51620228212148e-12!GO:0005788;endoplasmic reticulum lumen;6.86106666146814e-12!GO:0044431;Golgi apparatus part;7.15474964447269e-12!GO:0006511;ubiquitin-dependent protein catabolic process;7.98313252395065e-12!GO:0044257;cellular protein catabolic process;8.18083078872019e-12!GO:0030554;adenyl nucleotide binding;8.70672929188948e-12!GO:0005524;ATP binding;9.75750563297773e-12!GO:0022618;protein-RNA complex assembly;9.76889848382907e-12!GO:0019941;modification-dependent protein catabolic process;1.03935343188155e-11!GO:0043632;modification-dependent macromolecule catabolic process;1.03935343188155e-11!GO:0030163;protein catabolic process;1.68344996017907e-11!GO:0032559;adenyl ribonucleotide binding;1.77471838277848e-11!GO:0044455;mitochondrial membrane part;2.08219903300048e-11!GO:0015934;large ribosomal subunit;2.52157235109652e-11!GO:0043228;non-membrane-bound organelle;2.58007954566146e-11!GO:0043232;intracellular non-membrane-bound organelle;2.58007954566146e-11!GO:0015935;small ribosomal subunit;2.95922875938972e-11!GO:0000502;proteasome complex (sensu Eukaryota);3.67104640461465e-11!GO:0042623;ATPase activity, coupled;5.01247799190952e-11!GO:0043412;biopolymer modification;6.40617617487024e-11!GO:0006259;DNA metabolic process;9.20163200662272e-11!GO:0051186;cofactor metabolic process;9.33170672668311e-11!GO:0005773;vacuole;1.3740335066908e-10!GO:0044248;cellular catabolic process;2.18812314912552e-10!GO:0031965;nuclear membrane;2.40166104602421e-10!GO:0005635;nuclear envelope;2.57862852212112e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.63509061764984e-10!GO:0006464;protein modification process;7.72863942924873e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.4952996646713e-10!GO:0004386;helicase activity;8.84621614522293e-10!GO:0005746;mitochondrial respiratory chain;8.87327500391267e-10!GO:0031980;mitochondrial lumen;9.30503137974512e-10!GO:0005759;mitochondrial matrix;9.30503137974512e-10!GO:0003712;transcription cofactor activity;1.11456709222038e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.83308430609791e-09!GO:0000139;Golgi membrane;1.95238356215159e-09!GO:0000323;lytic vacuole;2.00893147193572e-09!GO:0005764;lysosome;2.00893147193572e-09!GO:0006888;ER to Golgi vesicle-mediated transport;2.31965776376985e-09!GO:0044453;nuclear membrane part;3.54927443226557e-09!GO:0008565;protein transporter activity;4.22321918779279e-09!GO:0003743;translation initiation factor activity;5.90408731242398e-09!GO:0003676;nucleic acid binding;6.30161130104749e-09!GO:0008026;ATP-dependent helicase activity;6.69645816324756e-09!GO:0006913;nucleocytoplasmic transport;6.74353719512312e-09!GO:0016787;hydrolase activity;8.87401809468296e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;8.96577413454496e-09!GO:0000375;RNA splicing, via transesterification reactions;8.96577413454496e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.96577413454496e-09!GO:0051169;nuclear transport;1.16033438933216e-08!GO:0050136;NADH dehydrogenase (quinone) activity;1.3585605171035e-08!GO:0003954;NADH dehydrogenase activity;1.3585605171035e-08!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.3585605171035e-08!GO:0016604;nuclear body;1.4264044465575e-08!GO:0006732;coenzyme metabolic process;1.45421961416035e-08!GO:0009259;ribonucleotide metabolic process;1.80617142143403e-08!GO:0048523;negative regulation of cellular process;1.8766737361282e-08!GO:0016070;RNA metabolic process;1.98754470248136e-08!GO:0005768;endosome;2.2446150021071e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.27076870917926e-08!GO:0030120;vesicle coat;2.39096554019475e-08!GO:0030662;coated vesicle membrane;2.39096554019475e-08!GO:0007049;cell cycle;3.17894713574407e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.87673803648245e-08!GO:0006413;translational initiation;6.16526667697402e-08!GO:0006163;purine nucleotide metabolic process;6.46970201380993e-08!GO:0009150;purine ribonucleotide metabolic process;7.09892093820878e-08!GO:0006461;protein complex assembly;8.50680874193055e-08!GO:0006446;regulation of translational initiation;9.17711695122338e-08!GO:0048475;coated membrane;1.23100168248445e-07!GO:0030117;membrane coat;1.23100168248445e-07!GO:0008639;small protein conjugating enzyme activity;1.31702822843326e-07!GO:0004842;ubiquitin-protein ligase activity;1.54683401134537e-07!GO:0042775;organelle ATP synthesis coupled electron transport;1.60957180468011e-07!GO:0042773;ATP synthesis coupled electron transport;1.60957180468011e-07!GO:0012501;programmed cell death;1.71086489223906e-07!GO:0019787;small conjugating protein ligase activity;1.71086489223906e-07!GO:0008654;phospholipid biosynthetic process;1.71086489223906e-07!GO:0016607;nuclear speck;1.81255154733157e-07!GO:0030964;NADH dehydrogenase complex (quinone);1.82271983877408e-07!GO:0045271;respiratory chain complex I;1.82271983877408e-07!GO:0005747;mitochondrial respiratory chain complex I;1.82271983877408e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.95710893832408e-07!GO:0009260;ribonucleotide biosynthetic process;2.03098528172956e-07!GO:0006164;purine nucleotide biosynthetic process;2.07557560729163e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.18519085785649e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.18519085785649e-07!GO:0006974;response to DNA damage stimulus;2.22683969883514e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.88592054532458e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.88592054532458e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.88592054532458e-07!GO:0016023;cytoplasmic membrane-bound vesicle;2.91522235374147e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.92071821292276e-07!GO:0006915;apoptosis;3.0188588262866e-07!GO:0031988;membrane-bound vesicle;3.20438231326393e-07!GO:0043038;amino acid activation;3.26797322895685e-07!GO:0006418;tRNA aminoacylation for protein translation;3.26797322895685e-07!GO:0043039;tRNA aminoacylation;3.26797322895685e-07!GO:0043687;post-translational protein modification;3.38418770567504e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.72117556472513e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.76746900546209e-07!GO:0042254;ribosome biogenesis and assembly;4.14596124321868e-07!GO:0006399;tRNA metabolic process;4.32680534730158e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.62681302190328e-07!GO:0048519;negative regulation of biological process;6.46401130638991e-07!GO:0008219;cell death;6.60032530654903e-07!GO:0016265;death;6.60032530654903e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.69880142402314e-07!GO:0009144;purine nucleoside triphosphate metabolic process;6.69880142402314e-07!GO:0009141;nucleoside triphosphate metabolic process;7.66384656499388e-07!GO:0005798;Golgi-associated vesicle;7.73061111744916e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.08038059137317e-07!GO:0015986;ATP synthesis coupled proton transport;8.08038059137317e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.08038059137317e-07!GO:0031410;cytoplasmic vesicle;8.23458478184151e-07!GO:0031982;vesicle;8.66251696424094e-07!GO:0009055;electron carrier activity;1.03258284379929e-06!GO:0003714;transcription corepressor activity;1.15207200118912e-06!GO:0016881;acid-amino acid ligase activity;1.26587494487731e-06!GO:0019829;cation-transporting ATPase activity;1.50825066499634e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.54117561141602e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.54117561141602e-06!GO:0005770;late endosome;1.70335671929063e-06!GO:0005643;nuclear pore;1.70335671929063e-06!GO:0009056;catabolic process;2.00388100592784e-06!GO:0051789;response to protein stimulus;2.02968840777294e-06!GO:0006986;response to unfolded protein;2.02968840777294e-06!GO:0017038;protein import;2.14374135904595e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.7545334027089e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.7545334027089e-06!GO:0046034;ATP metabolic process;2.82410965482362e-06!GO:0009060;aerobic respiration;2.85488603000981e-06!GO:0044440;endosomal part;3.32173351843369e-06!GO:0010008;endosome membrane;3.32173351843369e-06!GO:0022402;cell cycle process;3.32173351843369e-06!GO:0016740;transferase activity;3.63464543771564e-06!GO:0051726;regulation of cell cycle;6.65420920535428e-06!GO:0000074;regulation of progression through cell cycle;6.83478786508435e-06!GO:0045333;cellular respiration;7.80252901665721e-06!GO:0009117;nucleotide metabolic process;7.9426178682982e-06!GO:0051246;regulation of protein metabolic process;8.45832658011839e-06!GO:0006281;DNA repair;8.72395022107816e-06!GO:0006754;ATP biosynthetic process;1.06444454686173e-05!GO:0006753;nucleoside phosphate metabolic process;1.06444454686173e-05!GO:0030133;transport vesicle;1.09001529151084e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.11704337374807e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.22944579914227e-05!GO:0065002;intracellular protein transport across a membrane;1.23065831367015e-05!GO:0006403;RNA localization;1.28653996523182e-05!GO:0016564;transcription repressor activity;1.30928456609619e-05!GO:0051188;cofactor biosynthetic process;1.34397734141254e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.43736713383787e-05!GO:0016491;oxidoreductase activity;1.43736713383787e-05!GO:0031252;leading edge;1.53244703602499e-05!GO:0050657;nucleic acid transport;1.70696645955571e-05!GO:0051236;establishment of RNA localization;1.70696645955571e-05!GO:0050658;RNA transport;1.70696645955571e-05!GO:0046930;pore complex;1.82988140023041e-05!GO:0030176;integral to endoplasmic reticulum membrane;1.93961678704603e-05!GO:0009719;response to endogenous stimulus;2.39141757212404e-05!GO:0051187;cofactor catabolic process;2.64213392907223e-05!GO:0044262;cellular carbohydrate metabolic process;2.64958427946174e-05!GO:0006366;transcription from RNA polymerase II promoter;2.81944906929885e-05!GO:0006613;cotranslational protein targeting to membrane;2.82882312121853e-05!GO:0005761;mitochondrial ribosome;2.82882312121853e-05!GO:0000313;organellar ribosome;2.82882312121853e-05!GO:0033116;ER-Golgi intermediate compartment membrane;2.89571419382347e-05!GO:0006099;tricarboxylic acid cycle;3.03231370187042e-05!GO:0046356;acetyl-CoA catabolic process;3.03231370187042e-05!GO:0005905;coated pit;3.18021261522505e-05!GO:0043069;negative regulation of programmed cell death;3.23472247615902e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.31728831053821e-05!GO:0003924;GTPase activity;3.90942646341371e-05!GO:0003724;RNA helicase activity;4.17803318684117e-05!GO:0043566;structure-specific DNA binding;4.23427470742282e-05!GO:0051170;nuclear import;4.27878879208679e-05!GO:0009109;coenzyme catabolic process;4.34241424468302e-05!GO:0016859;cis-trans isomerase activity;4.37236772998243e-05!GO:0006606;protein import into nucleus;4.41341064809333e-05!GO:0046474;glycerophospholipid biosynthetic process;4.54710363432938e-05!GO:0016853;isomerase activity;4.90129058913333e-05!GO:0043066;negative regulation of apoptosis;5.56364491533803e-05!GO:0045786;negative regulation of progression through cell cycle;6.25711154106473e-05!GO:0030867;rough endoplasmic reticulum membrane;6.40490283358395e-05!GO:0006916;anti-apoptosis;6.40490283358395e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.7736302659203e-05!GO:0015399;primary active transmembrane transporter activity;6.7736302659203e-05!GO:0046467;membrane lipid biosynthetic process;6.96721792454229e-05!GO:0006752;group transfer coenzyme metabolic process;7.22837671759135e-05!GO:0046489;phosphoinositide biosynthetic process;7.73607162855031e-05!GO:0050794;regulation of cellular process;8.22698484441971e-05!GO:0016568;chromatin modification;8.39125955615598e-05!GO:0031324;negative regulation of cellular metabolic process;8.55572652497856e-05!GO:0045454;cell redox homeostasis;8.81494030118364e-05!GO:0043067;regulation of programmed cell death;9.97224289101408e-05!GO:0004576;oligosaccharyl transferase activity;0.000103672564017001!GO:0006084;acetyl-CoA metabolic process;0.00010949448481665!GO:0031968;organelle outer membrane;0.000122138763914682!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000122964845834064!GO:0005667;transcription factor complex;0.000126977272276107!GO:0042981;regulation of apoptosis;0.000131369394001507!GO:0000151;ubiquitin ligase complex;0.000148810908583781!GO:0009108;coenzyme biosynthetic process;0.000151120907161283!GO:0003697;single-stranded DNA binding;0.000155871479292104!GO:0019867;outer membrane;0.000175564850253934!GO:0032446;protein modification by small protein conjugation;0.000177172749860222!GO:0045259;proton-transporting ATP synthase complex;0.000181344113773719!GO:0030532;small nuclear ribonucleoprotein complex;0.000181554337731143!GO:0008250;oligosaccharyl transferase complex;0.000193119774000324!GO:0051028;mRNA transport;0.000198003454586096!GO:0006612;protein targeting to membrane;0.000207963929560979!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000208554775537091!GO:0008361;regulation of cell size;0.000213476512758115!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000218124034146568!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000219036210850115!GO:0006260;DNA replication;0.000228030923345009!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000245342614884263!GO:0005048;signal sequence binding;0.00025226432143754!GO:0016567;protein ubiquitination;0.000254323141367756!GO:0016049;cell growth;0.000261934070468303!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000270356101881375!GO:0007040;lysosome organization and biogenesis;0.000276830296534198!GO:0001558;regulation of cell growth;0.000335533271545476!GO:0019843;rRNA binding;0.000349775121509913!GO:0030663;COPI coated vesicle membrane;0.000350656402963227!GO:0030126;COPI vesicle coat;0.000350656402963227!GO:0030134;ER to Golgi transport vesicle;0.000353339581085525!GO:0005791;rough endoplasmic reticulum;0.000360709244268092!GO:0008610;lipid biosynthetic process;0.000364382684629659!GO:0003713;transcription coactivator activity;0.000370370993738274!GO:0009892;negative regulation of metabolic process;0.000384751796429488!GO:0000245;spliceosome assembly;0.000453654802977171!GO:0018196;peptidyl-asparagine modification;0.000519052765024095!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000519052765024095!GO:0006364;rRNA processing;0.000563540302758238!GO:0006497;protein amino acid lipidation;0.000571098533457593!GO:0015980;energy derivation by oxidation of organic compounds;0.000585166181753168!GO:0000278;mitotic cell cycle;0.000587485626237584!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.000622159901252137!GO:0005769;early endosome;0.000672533129426801!GO:0043492;ATPase activity, coupled to movement of substances;0.00067455922497002!GO:0006891;intra-Golgi vesicle-mediated transport;0.000699019521164135!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000706068352754811!GO:0044420;extracellular matrix part;0.000706068352754811!GO:0007033;vacuole organization and biogenesis;0.000706349698218353!GO:0030036;actin cytoskeleton organization and biogenesis;0.000706349698218353!GO:0015630;microtubule cytoskeleton;0.00072031450812767!GO:0007005;mitochondrion organization and biogenesis;0.00074837717883921!GO:0004177;aminopeptidase activity;0.00074837717883921!GO:0019899;enzyme binding;0.000749483745863572!GO:0005813;centrosome;0.000771461014215161!GO:0016072;rRNA metabolic process;0.000829417212178931!GO:0006506;GPI anchor biosynthetic process;0.000843444588801343!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000852090858284689!GO:0005839;proteasome core complex (sensu Eukaryota);0.000857161373129862!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000916702651110017!GO:0046519;sphingoid metabolic process;0.000917016326046745!GO:0043623;cellular protein complex assembly;0.000938681739164595!GO:0006650;glycerophospholipid metabolic process;0.00100895910320551!GO:0006505;GPI anchor metabolic process;0.0010305999884878!GO:0030137;COPI-coated vesicle;0.00108269392575857!GO:0016197;endosome transport;0.00121989019147532!GO:0019798;procollagen-proline dioxygenase activity;0.00124018730261777!GO:0016563;transcription activator activity;0.0012803893501305!GO:0009165;nucleotide biosynthetic process;0.0012803893501305!GO:0030127;COPII vesicle coat;0.00128227327794647!GO:0012507;ER to Golgi transport vesicle membrane;0.00128227327794647!GO:0031543;peptidyl-proline dioxygenase activity;0.00128227327794647!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0013702230514752!GO:0005741;mitochondrial outer membrane;0.00138464925667567!GO:0045045;secretory pathway;0.00141015220573822!GO:0008186;RNA-dependent ATPase activity;0.00142294816535498!GO:0051427;hormone receptor binding;0.00145798552738428!GO:0016044;membrane organization and biogenesis;0.001460561092975!GO:0006323;DNA packaging;0.00149513363466252!GO:0006414;translational elongation;0.00155825951628432!GO:0043284;biopolymer biosynthetic process;0.00157595992580434!GO:0006672;ceramide metabolic process;0.00158141312486716!GO:0005885;Arp2/3 protein complex;0.00167188236254624!GO:0006509;membrane protein ectodomain proteolysis;0.00183621694224587!GO:0033619;membrane protein proteolysis;0.00183621694224587!GO:0005815;microtubule organizing center;0.00184347425178586!GO:0030658;transport vesicle membrane;0.00189187152984104!GO:0006091;generation of precursor metabolites and energy;0.00189371797911118!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00194738103852447!GO:0003729;mRNA binding;0.00205502243334498!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00205523772592314!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00205523772592314!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00206227801756134!GO:0051920;peroxiredoxin activity;0.00211387192169261!GO:0051276;chromosome organization and biogenesis;0.00212863763232759!GO:0042158;lipoprotein biosynthetic process;0.00224176053478651!GO:0003690;double-stranded DNA binding;0.00233021966400934!GO:0016310;phosphorylation;0.00235103657586779!GO:0035257;nuclear hormone receptor binding;0.0023596672595585!GO:0005774;vacuolar membrane;0.00242832938233584!GO:0006643;membrane lipid metabolic process;0.00251760145992185!GO:0006793;phosphorus metabolic process;0.00261301711924934!GO:0006796;phosphate metabolic process;0.00261301711924934!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00278844232773922!GO:0051168;nuclear export;0.00288880884459468!GO:0008047;enzyme activator activity;0.00293513585619567!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0031036839223543!GO:0043021;ribonucleoprotein binding;0.00314403401283088!GO:0006984;ER-nuclear signaling pathway;0.00325736883084088!GO:0005975;carbohydrate metabolic process;0.00329010314708131!GO:0031418;L-ascorbic acid binding;0.00337685857259918!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00345799307726825!GO:0050789;regulation of biological process;0.00359918525723473!GO:0007050;cell cycle arrest;0.00364160402886925!GO:0004004;ATP-dependent RNA helicase activity;0.00364160402886925!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00364660822194517!GO:0001726;ruffle;0.00364972749129357!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.00375789698041072!GO:0004298;threonine endopeptidase activity;0.00384113696560419!GO:0016481;negative regulation of transcription;0.00387383555947612!GO:0030132;clathrin coat of coated pit;0.00387702775783161!GO:0006892;post-Golgi vesicle-mediated transport;0.00388135980621091!GO:0007243;protein kinase cascade;0.00391212577747332!GO:0030029;actin filament-based process;0.00396199888033064!GO:0016779;nucleotidyltransferase activity;0.00408031428315259!GO:0030659;cytoplasmic vesicle membrane;0.00408031428315259!GO:0030384;phosphoinositide metabolic process;0.00436614367295817!GO:0030660;Golgi-associated vesicle membrane;0.00440359070172303!GO:0031072;heat shock protein binding;0.00462599692999432!GO:0000059;protein import into nucleus, docking;0.00470287624947981!GO:0030118;clathrin coat;0.00486076048013087!GO:0044433;cytoplasmic vesicle part;0.0050796146586981!GO:0009967;positive regulation of signal transduction;0.00510066585978831!GO:0016363;nuclear matrix;0.00518766312279437!GO:0048471;perinuclear region of cytoplasm;0.0051921912864474!GO:0048500;signal recognition particle;0.00541644832077799!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00582471788147482!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0058761189482716!GO:0051252;regulation of RNA metabolic process;0.00598269048348339!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00599818327427785!GO:0006818;hydrogen transport;0.00612033972898894!GO:0048522;positive regulation of cellular process;0.00616552606189569!GO:0044437;vacuolar part;0.00650564697445859!GO:0008484;sulfuric ester hydrolase activity;0.00656994021656169!GO:0000030;mannosyltransferase activity;0.00658143096644326!GO:0005525;GTP binding;0.00659197307548785!GO:0015992;proton transport;0.006605791395602!GO:0005581;collagen;0.00683884689459038!GO:0032940;secretion by cell;0.00694227801671378!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00722530783323984!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0073024220564291!GO:0030521;androgen receptor signaling pathway;0.00762417044823715!GO:0017166;vinculin binding;0.00793820857585282!GO:0031301;integral to organelle membrane;0.0080308547936075!GO:0030027;lamellipodium;0.00842682645384668!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00844476147373596!GO:0006950;response to stress;0.00854561507532397!GO:0001666;response to hypoxia;0.00877773505284664!GO:0003923;GPI-anchor transamidase activity;0.00893980887385657!GO:0016255;attachment of GPI anchor to protein;0.00893980887385657!GO:0042765;GPI-anchor transamidase complex;0.00893980887385657!GO:0031902;late endosome membrane;0.00909246150125501!GO:0065009;regulation of a molecular function;0.00919552990079479!GO:0007010;cytoskeleton organization and biogenesis;0.00927538936056545!GO:0003678;DNA helicase activity;0.00937557411308658!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00943703600161189!GO:0040008;regulation of growth;0.00974110604415201!GO:0031124;mRNA 3'-end processing;0.00995970156683199!GO:0005765;lysosomal membrane;0.0100426789983354!GO:0006897;endocytosis;0.0103078238554044!GO:0010324;membrane invagination;0.0103078238554044!GO:0015923;mannosidase activity;0.0104193474937024!GO:0012506;vesicle membrane;0.0104758045682683!GO:0019752;carboxylic acid metabolic process;0.0104758045682683!GO:0007034;vacuolar transport;0.0114037246567942!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0115021901495588!GO:0045047;protein targeting to ER;0.0115021901495588!GO:0001527;microfibril;0.0116317660834493!GO:0007041;lysosomal transport;0.0120395198788053!GO:0006022;aminoglycan metabolic process;0.0120737134420354!GO:0007160;cell-matrix adhesion;0.0121587048269604!GO:0003746;translation elongation factor activity;0.0121998888814924!GO:0050662;coenzyme binding;0.0122790825533129!GO:0006378;mRNA polyadenylation;0.0122890451524806!GO:0003756;protein disulfide isomerase activity;0.0125821115491886!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0125821115491886!GO:0006082;organic acid metabolic process;0.0125864584452015!GO:0004287;prolyl oligopeptidase activity;0.0127264264396993!GO:0000049;tRNA binding;0.0128112106901691!GO:0008139;nuclear localization sequence binding;0.0129042689952183!GO:0030433;ER-associated protein catabolic process;0.0131731187813368!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0131731187813368!GO:0032561;guanyl ribonucleotide binding;0.0134497597379835!GO:0019001;guanyl nucleotide binding;0.0134497597379835!GO:0045792;negative regulation of cell size;0.0135222180317664!GO:0016860;intramolecular oxidoreductase activity;0.0137119913097316!GO:0008092;cytoskeletal protein binding;0.0139879700974733!GO:0030308;negative regulation of cell growth;0.0144265957310063!GO:0031589;cell-substrate adhesion;0.014930402660225!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0152800820670481!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0152800820670481!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0152800820670481!GO:0031625;ubiquitin protein ligase binding;0.0154312413826148!GO:0006607;NLS-bearing substrate import into nucleus;0.0154913723157598!GO:0042802;identical protein binding;0.0161047379894136!GO:0016126;sterol biosynthetic process;0.0161793232125617!GO:0006458;'de novo' protein folding;0.0166343867116853!GO:0051084;'de novo' posttranslational protein folding;0.0166343867116853!GO:0035258;steroid hormone receptor binding;0.0169557715925567!GO:0007030;Golgi organization and biogenesis;0.0172472646512908!GO:0030149;sphingolipid catabolic process;0.0175131956359769!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0176864847768168!GO:0022890;inorganic cation transmembrane transporter activity;0.017948955908331!GO:0006665;sphingolipid metabolic process;0.018536396624407!GO:0046483;heterocycle metabolic process;0.0188321040239109!GO:0004563;beta-N-acetylhexosaminidase activity;0.0191311518824795!GO:0022408;negative regulation of cell-cell adhesion;0.0194269742647299!GO:0005637;nuclear inner membrane;0.0196676293415742!GO:0003711;transcription elongation regulator activity;0.0196676293415742!GO:0008312;7S RNA binding;0.0207752071176071!GO:0030203;glycosaminoglycan metabolic process;0.0207752071176071!GO:0000339;RNA cap binding;0.0208162511703194!GO:0050681;androgen receptor binding;0.0220464278476963!GO:0015631;tubulin binding;0.0220464278476963!GO:0005862;muscle thin filament tropomyosin;0.0223287274586718!GO:0048487;beta-tubulin binding;0.0223287274586718!GO:0030032;lamellipodium biogenesis;0.0223287274586718!GO:0030119;AP-type membrane coat adaptor complex;0.022716964603173!GO:0001516;prostaglandin biosynthetic process;0.0228163717174526!GO:0046457;prostanoid biosynthetic process;0.0228163717174526!GO:0006644;phospholipid metabolic process;0.0228733496822091!GO:0030968;unfolded protein response;0.0231209587336681!GO:0031123;RNA 3'-end processing;0.0235189137591528!GO:0006402;mRNA catabolic process;0.0235189137591528!GO:0006383;transcription from RNA polymerase III promoter;0.0243180780406391!GO:0005832;chaperonin-containing T-complex;0.0245728689929206!GO:0031901;early endosome membrane;0.0252498206423507!GO:0030518;steroid hormone receptor signaling pathway;0.0256892198689327!GO:0033559;unsaturated fatty acid metabolic process;0.025847749133962!GO:0006636;unsaturated fatty acid biosynthetic process;0.025847749133962!GO:0006007;glucose catabolic process;0.0259762728496323!GO:0033673;negative regulation of kinase activity;0.0259762728496323!GO:0006469;negative regulation of protein kinase activity;0.0259762728496323!GO:0005604;basement membrane;0.0259940181754198!GO:0005096;GTPase activator activity;0.0263081365414769!GO:0006740;NADPH regeneration;0.0272256036005209!GO:0006098;pentose-phosphate shunt;0.0272256036005209!GO:0000087;M phase of mitotic cell cycle;0.0273255272873244!GO:0051348;negative regulation of transferase activity;0.0274472132693073!GO:0005801;cis-Golgi network;0.0274472132693073!GO:0009225;nucleotide-sugar metabolic process;0.0275708102318946!GO:0030145;manganese ion binding;0.0279317874296792!GO:0006807;nitrogen compound metabolic process;0.0279374128420677!GO:0005762;mitochondrial large ribosomal subunit;0.0279374128420677!GO:0000315;organellar large ribosomal subunit;0.0279374128420677!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0291353099134718!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0291353099134718!GO:0005586;collagen type III;0.0295485494104213!GO:0019377;glycolipid catabolic process;0.029786404951217!GO:0043433;negative regulation of transcription factor activity;0.0302666723134392!GO:0004228;gelatinase A activity;0.0306230421162548!GO:0001955;blood vessel maturation;0.0306230421162548!GO:0007067;mitosis;0.0307852032498609!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0316194668151463!GO:0006693;prostaglandin metabolic process;0.0316454135187642!GO:0006692;prostanoid metabolic process;0.0316454135187642!GO:0006261;DNA-dependent DNA replication;0.0316454135187642!GO:0001952;regulation of cell-matrix adhesion;0.03200081453239!GO:0004559;alpha-mannosidase activity;0.0320252354524372!GO:0031529;ruffle organization and biogenesis;0.0320327875703777!GO:0030131;clathrin adaptor complex;0.0320458446163017!GO:0030125;clathrin vesicle coat;0.0323645915140834!GO:0030665;clathrin coated vesicle membrane;0.0323645915140834!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0325790506239066!GO:0022403;cell cycle phase;0.0326959075832027!GO:0006417;regulation of translation;0.0326961230549911!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0335599920381977!GO:0000209;protein polyubiquitination;0.0337453579119546!GO:0045926;negative regulation of growth;0.0352232779664385!GO:0044255;cellular lipid metabolic process;0.0352314509526225!GO:0005869;dynactin complex;0.0352951939557501!GO:0004003;ATP-dependent DNA helicase activity;0.0366327103635182!GO:0009308;amine metabolic process;0.0366327103635182!GO:0051329;interphase of mitotic cell cycle;0.0380220808331712!GO:0006769;nicotinamide metabolic process;0.038914594952144!GO:0008147;structural constituent of bone;0.0391199139091163!GO:0019511;peptidyl-proline hydroxylation;0.0391873810362806!GO:0018208;peptidyl-proline modification;0.0391873810362806!GO:0019471;4-hydroxyproline metabolic process;0.0391873810362806!GO:0018401;peptidyl-proline hydroxylation to 4-hydroxy-L-proline;0.0391873810362806!GO:0008234;cysteine-type peptidase activity;0.0392168457998855!GO:0006739;NADP metabolic process;0.0402463350329736!GO:0051085;chaperone cofactor-dependent protein folding;0.0406854331556512!GO:0003899;DNA-directed RNA polymerase activity;0.0408014769396792!GO:0006516;glycoprotein catabolic process;0.0411702190169233!GO:0009889;regulation of biosynthetic process;0.0424667650410021!GO:0043488;regulation of mRNA stability;0.0425348567862988!GO:0043487;regulation of RNA stability;0.0425348567862988!GO:0006289;nucleotide-excision repair;0.0425348567862988!GO:0001573;ganglioside metabolic process;0.0433477202385984!GO:0051052;regulation of DNA metabolic process;0.0439020325859018!GO:0006518;peptide metabolic process;0.0439178881746372!GO:0006626;protein targeting to mitochondrion;0.0442649020350899!GO:0005684;U2-dependent spliceosome;0.0443051498392552!GO:0006508;proteolysis;0.0446610539660121!GO:0001953;negative regulation of cell-matrix adhesion;0.044828466575132!GO:0006352;transcription initiation;0.0453088321267202!GO:0000096;sulfur amino acid metabolic process;0.045642797333382!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0461090472988533!GO:0048144;fibroblast proliferation;0.0461090472988533!GO:0048145;regulation of fibroblast proliferation;0.0461090472988533!GO:0004720;protein-lysine 6-oxidase activity;0.0462047290968475!GO:0006520;amino acid metabolic process;0.0464307017246465!GO:0008238;exopeptidase activity;0.0477284575631128!GO:0003684;damaged DNA binding;0.0478855986742745!GO:0006595;polyamine metabolic process;0.0484070736862477!GO:0048037;cofactor binding;0.048427056130791!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.048427056130791!GO:0051301;cell division;0.0488747773203834!GO:0009112;nucleobase metabolic process;0.0491437257898518!GO:0007162;negative regulation of cell adhesion;0.0498275879050103!GO:0043631;RNA polyadenylation;0.0499479875602371
|sample_id=14314
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=aorta
|top_motifs=HIF1A:4.11679056413;EN1,2:3.26468870705;NKX3-1:2.83773815293;NFE2L1:2.49952210274;XBP1:2.42601316587;ALX4:2.37124270617;TAL1_TCF{3,4,12}:2.26418590754;HOX{A5,B5}:2.23348827722;HMX1:1.93579292696;ESR1:1.91526760554;GZF1:1.8994666725;NKX3-2:1.81260988754;KLF4:1.65753666759;RXRA_VDR{dimer}:1.64758863175;GLI1..3:1.63783832809;TEAD1:1.63086414453;HSF1,2:1.5904883054;EVI1:1.57256444612;UFEwm:1.57237533482;GCM1,2:1.5488950126;HMGA1,2:1.472268473;MYBL2:1.44060254605;MAFB:1.37067813036;SPZ1:1.35726033647;EP300:1.32608196354;ZBTB6:1.29914702667;ATF6:1.28312709892;TEF:1.26741334352;AHR_ARNT_ARNT2:1.222349691;TBX4,5:1.20475419935;NKX2-1,4:1.12062080631;PPARG:1.10758748824;RXR{A,B,G}:1.09891921016;SRF:1.08731085386;FOXL1:1.08009270467;GATA4:1.0756903079;HLF:1.07388389828;ZNF384:1.06570052703;EBF1:1.05278210685;FOX{I1,J2}:1.05202052772;TLX1..3_NFIC{dimer}:1.02309557722;HOX{A4,D4}:1.01710113763;XCPE1{core}:0.993757970204;SOX17:0.985391125479;PRDM1:0.940722928395;TP53:0.931056218151;NFATC1..3:0.901885088459;IKZF1:0.883344048164;MTE{core}:0.841385179833;MYFfamily:0.813519366322;NANOG{mouse}:0.808865563382;GTF2A1,2:0.792480598255;MZF1:0.784050029707;SMAD1..7,9:0.78013828542;GTF2I:0.740514740163;FOXN1:0.735085847627;TOPORS:0.716664453658;HES1:0.692174731543;ZIC1..3:0.685183605264;ZNF238:0.677691889463;DBP:0.675096092409;NFE2L2:0.65624775262;ELK1,4_GABP{A,B1}:0.633530138999;SP1:0.611006431758;HOX{A6,A7,B6,B7}:0.581373598724;NR3C1:0.572238843609;CEBPA,B_DDIT3:0.529480402683;MAZ:0.527892033136;TFAP4:0.495309937388;CREB1:0.491928351849;PAX4:0.490400857968;ARID5B:0.490079151932;TLX2:0.44942441765;HAND1,2:0.444206736188;bHLH_family:0.421119113972;FOSL2:0.419484628466;PAX8:0.41944277025;BACH2:0.404247014643;PATZ1:0.399576152657;FOS_FOS{B,L1}_JUN{B,D}:0.396876979571;PAX5:0.395503099254;AIRE:0.393645282006;PAX1,9:0.382294254897;ZFP161:0.372891305527;PAX3,7:0.343023564042;GFI1B:0.338299014289;TFAP2B:0.275304412893;NKX2-2,8:0.256868997135;PAX2:0.254543096896;POU3F1..4:0.254269067068;TBP:0.252087131696;HOXA9_MEIS1:0.235380697157;MED-1{core}:0.222064143656;RREB1:0.218013201955;NRF1:0.217328274792;ADNP_IRX_SIX_ZHX:0.180020984746;TFCP2:0.178953314408;ATF4:0.151026182149;TFAP2{A,C}:0.14490297805;HIC1:0.144845245797;ZNF143:0.141438910151;ZBTB16:0.123370894419;SREBF1,2:0.114965717107;LHX3,4:0.0919087433723;NFE2:0.0774755463478;AR:0.039545368911;MYB:0.0259531963107;ZNF423:0.00794638738289;NFIX:0.0021209822401;NHLH1,2:-0.00842666941353;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0290580879835;BPTF:-0.0573680954623;ATF5_CREB3:-0.0770910685172;ZNF148:-0.0775185260475;ATF2:-0.0838721850013;HNF1A:-0.0961279438427;CDC5L:-0.100518230695;SOX2:-0.129762988504;RFX1:-0.22186572347;LMO2:-0.241941670289;RUNX1..3:-0.243819000966;REST:-0.247586489762;FOX{D1,D2}:-0.264652817163;STAT1,3:-0.282049725358;MEF2{A,B,C,D}:-0.29097574977;ONECUT1,2:-0.303601822781;JUN:-0.309123274846;LEF1_TCF7_TCF7L1,2:-0.321811034904;FOXD3:-0.390198822214;HBP1_HMGB_SSRP1_UBTF:-0.39198122105;IRF1,2:-0.398391216918;ETS1,2:-0.436348372313;CRX:-0.437323244213;POU6F1:-0.449564478668;NFKB1_REL_RELA:-0.450115370113;GFI1:-0.458929135474;ELF1,2,4:-0.472125699224;STAT2,4,6:-0.482791444151;YY1:-0.484873162172;SOX5:-0.492349274999;SPI1:-0.516306597923;FOXP1:-0.544263887297;EGR1..3:-0.545004809888;STAT5{A,B}:-0.589731762482;TFDP1:-0.635297240912;HNF4A_NR2F1,2:-0.644429929357;IRF7:-0.657263671275;TGIF1:-0.666391237458;NR1H4:-0.683949270004;ALX1:-0.69956280136;PRRX1,2:-0.715765040493;SOX{8,9,10}:-0.72690273831;SPIB:-0.759402015601;MTF1:-0.773824092185;GATA6:-0.775644978991;T:-0.784672025561;NFIL3:-0.803865125284;NFY{A,B,C}:-0.807085400751;E2F1..5:-0.808244897832;POU1F1:-0.839615881135;POU5F1:-0.849314491685;ZEB1:-0.868836110497;VSX1,2:-0.872581259196;FOXO1,3,4:-0.903978990159;PAX6:-0.904741869838;FOXA2:-0.919195532831;PDX1:-0.951881763192;SNAI1..3:-0.991825419833;CDX1,2,4:-1.01349114901;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.05006673256;RORA:-1.0506683996;PBX1:-1.08374927757;DMAP1_NCOR{1,2}_SMARC:-1.0882425754;RFX2..5_RFXANK_RFXAP:-1.10376306834;ESRRA:-1.19008877058;NANOG:-1.19263342775;FOXP3:-1.21188066755;RBPJ:-1.23202051241;NKX6-1,2:-1.24024744548;POU2F1..3:-1.27591741374;PITX1..3:-1.29064349311;NR6A1:-1.42162210151;IKZF2:-1.4241822431;FOXM1:-1.43045697902;CUX2:-1.44431520031;NKX2-3_NKX2-5:-1.54075737263;MYOD1:-1.5701840697;OCT4_SOX2{dimer}:-1.57924408194;BREu{core}:-1.63912484476;NR5A1,2:-1.74386878774;FOX{F1,F2,J1}:-1.83757761773;FOXQ1:-2.00240905396
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14314-155D3;search_select_hide=table117:FF:14314-155D3
}}
}}

Latest revision as of 19:06, 4 June 2020

Name:Smooth Muscle Cells - Aortic, donor0 (nuclear fraction)
Species:Human (Homo sapiens)
Library ID:CNhs12402
Sample type:fractionations and perturbations
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueaorta
dev stage54 years old adult
sexmale
age54
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberCA354-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005133
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12402 CAGE DRX008044 DRR008916
Accession ID Hg19

Library idBAMCTSS
CNhs12402 DRZ000341 DRZ001726
Accession ID Hg38

Library idBAMCTSS
CNhs12402 DRZ011691 DRZ013076
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005133
sRNA-Seq  SAMD00005133
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10006 RNA-Seq DRX057106 DRR062865
SRhi10015.GATCAG sRNA-Seq DRX036987 DRR041353
Accession ID Hg19

Library idBAMCTSS
RDhi10006 DRZ007941
SRhi10015.GATCAG DRZ006995


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.283
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.176
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.707
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0811
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.437
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.745
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.172
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.182
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.375
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.119
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.829
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0761
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.545
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.119
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0766
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.315
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.212
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.881
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.601
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte1.068
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic1.305
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.102
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0564
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.299
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0.212
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12402

Jaspar motifP-value
MA0002.20.127
MA0003.10.847
MA0004.10.104
MA0006.10.646
MA0007.10.833
MA0009.10.706
MA0014.10.584
MA0017.10.00668
MA0018.20.203
MA0019.10.994
MA0024.15.23329e-4
MA0025.10.0289
MA0027.10.498
MA0028.10.637
MA0029.10.401
MA0030.10.336
MA0031.10.11
MA0035.20.0236
MA0038.10.0291
MA0039.20.289
MA0040.10.212
MA0041.10.511
MA0042.10.843
MA0043.10.223
MA0046.10.0478
MA0047.20.733
MA0048.10.247
MA0050.11.67165e-4
MA0051.10.00968
MA0052.10.197
MA0055.10.589
MA0057.10.958
MA0058.10.0357
MA0059.10.187
MA0060.15.90864e-7
MA0061.10.00979
MA0062.20.108
MA0065.20.0014
MA0066.10.908
MA0067.10.355
MA0068.10.0316
MA0069.10.0855
MA0070.10.163
MA0071.10.226
MA0072.10.291
MA0073.10.67
MA0074.10.769
MA0076.10.893
MA0077.10.172
MA0078.10.999
MA0079.20.705
MA0080.22.17815e-8
MA0081.10.028
MA0083.10.00188
MA0084.10.332
MA0087.10.935
MA0088.10.375
MA0090.12.32462e-4
MA0091.10.798
MA0092.10.995
MA0093.10.175
MA0099.20.326
MA0100.10.303
MA0101.10.00176
MA0102.20.69
MA0103.12.35231e-4
MA0104.20.0114
MA0105.10.00516
MA0106.10.421
MA0107.10.00341
MA0108.20.0592
MA0111.10.0745
MA0112.20.741
MA0113.10.946
MA0114.10.00148
MA0115.10.026
MA0116.10.486
MA0117.10.907
MA0119.10.906
MA0122.10.731
MA0124.16.0919e-4
MA0125.10.0704
MA0131.10.855
MA0135.10.522
MA0136.14.39297e-8
MA0137.20.226
MA0138.20.584
MA0139.10.635
MA0140.10.091
MA0141.10.033
MA0142.10.00981
MA0143.10.863
MA0144.10.522
MA0145.10.917
MA0146.10.129
MA0147.10.134
MA0148.10.676
MA0149.10.51
MA0150.10.603
MA0152.10.171
MA0153.10.96
MA0154.10.21
MA0155.10.783
MA0156.16.73063e-4
MA0157.10.183
MA0159.10.672
MA0160.10.00318
MA0162.10.175
MA0163.10.0832
MA0164.10.196
MA0258.10.622
MA0259.10.521



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12402

Novel motifP-value
10.118
100.169
1000.352
1010.258
1020.327
1030.699
1040.994
1050.228
1060.291
1070.544
1080.397
1090.208
110.437
1100.84
1110.187
1120.875
1130.136
1140.692
1150.395
1160.475
1170.5
1180.956
1190.597
120.641
1200.712
1210.9
1220.0586
1238.98358e-4
1240.0685
1250.398
1260.446
1270.288
1280.104
1290.469
130.166
1300.372
1310.858
1320.847
1330.554
1340.48
1350.301
1360.604
1370.972
1380.607
1390.618
140.216
1400.329
1410.597
1420.761
1430.602
1440.916
1450.392
1460.0238
1470.0592
1480.455
1490.125
150.104
1500.411
1510.719
1520.584
1530.912
1540.678
1550.094
1560.156
1570.859
1580.0923
1590.551
160.308
1600.054
1610.497
1620.822
1630.263
1640.117
1650.293
1660.163
1670.327
1680.497
1690.827
170.795
180.534
190.587
20.874
200.683
210.993
220.963
230.532
240.338
250.095
260.676
270.319
280.339
290.769
30.586
300.608
310.996
325.16482e-11
330.217
340.463
350.682
360.00494
370.986
380.256
390.808
40.133
400.0146
410.0941
420.17
430.295
440.694
450.312
460.543
470.151
480.37
490.05
50.441
500.622
510.266
520.551
530.112
540.288
550.415
560.311
570.574
580.264
590.762
60.751
600.331
610.463
620.125
630.815
640.185
650.561
660.0691
670.571
680.748
690.949
70.055
700.271
710.711
720.133
730.556
740.212
750.587
760.95
770.689
780.0978
790.0605
80.242
800.398
810.371
820.87
830.139
840.166
850.928
860.71
870.877
880.73
890.472
90.9
900.245
910.893
920.677
930.839
940.674
950.533
960.174
970.284
980.0243
990.237



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12402


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000168 (human aortic smooth muscle cell sample)
0000406 (nuclear fraction sample)
0000672 (human Smooth Muscle Cells - Aortic, nuclear fraction sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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