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(Created page with "{{f5samples |id=FF:11283-116I5 |name=Smooth Muscle Cells - Aortic, donor1 |sample_id=11283 |rna_tube_id=116I5 |rna_box=116 |rna_position=I5 |sample_cell_lot=N/A |sampl...")
 
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{{f5samples
{{f5samples
|id=FF:11283-116I5
|DRA_sample_Accession=CAGE@SAMD00005435
|name=Smooth Muscle Cells - Aortic, donor1
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005435
|sample_id=11283
|accession_numbers=CAGE;DRX008468;DRR009340;DRZ000765;DRZ002150;DRZ012115;DRZ013500
|rna_tube_id=116I5
|accession_numbers_RNASeq=sRNA-Seq;DRX037122;DRR041488;DRZ007130
|rna_box=116
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009
|rna_position=I5
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=1401(1)
|rna_catalog_number=CA354-R10a
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=39 years old adult
|sample_tissue=aorta
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=39
|sample_ethnicity=H
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=smooth muscle cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=1.00000
|sample_note=
|profile_hcage=CNhs11085,LSID724,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10008,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000359,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002539
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000947,UBERON:0001009,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001135,UBERON:0001637,UBERON:0001981,UBERON:0002036,UBERON:0002049,UBERON:0002050,UBERON:0002111,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003081,UBERON:0003082,UBERON:0003104,UBERON:0003509,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004178,UBERON:0004237,UBERON:0004290,UBERON:0004535,UBERON:0004537,UBERON:0004571,UBERON:0004572,UBERON:0004573,UBERON:0004695,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0006965,UBERON:0007500,UBERON:0007798,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000168
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.09!121.37!TCF21;;chr8:55370487..55370503,+!p1@SOX17!1.95!87.79!SOX17;;chr1:170633348..170633399,+!p2@PRRX1!1.71!67.46!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.66!44.36!HAND2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.53!33.27!HOXC5;;chr11:64764435..64764449,-!p1@BATF2!1.52!43.74!BATF2;;chr8:11561684..11561751,+!p1@GATA4!1.40!24.03!GATA4;;chr18:19749386..19749404,+!p2@GATA6!1.38!32.34!GATA6;;chr11:46299199..46299233,+!p1@CREB3L1!1.37!113.66!CREB3L1;;chr9:132427972..132428056,+!p1@PRRX2!1.34!27.11!PRRX2;;chr18:19749541..19749557,+!p1@GATA6!1.32!60.68!GATA6;;chr16:86600426..86600441,+!p1@FOXC2!1.30!46.51!FOXC2;;chr1:170633262..170633285,+!p3@PRRX1!1.30!21.87!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.23!16.02!PRRX1;;chr10:94449703..94449718,+!p1@HHEX!1.22!59.14!HHEX;;chr19:13134772..13134822,+!p2@NFIX!1.21!22.18!NFIX;;chr4:174450089..174450153,-!p2@HAND2!1.19!14.48!HAND2;;chr20:6748325..6748352,+!p1@BMP2!1.17!19.71!BMP2;;chr11:46299539..46299620,+!p2@CREB3L1!1.15!22.18!CREB3L1;;chr2:231084639..231084654,-!p2@SP110!1.13!20.64!SP110;;chr1:170632285..170632309,+!p1@PRRX1!1.13!14.17!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.12!33.58!TWIST1;;chr11:615570..615721,-!p2@IRF7!1.12!24.03!IRF7;;chr8:72756063..72756125,-!p1@MSC!1.09!22.79!MSC;;chr8:106330656..106330684,+!p1@ZFPM2!1.08!29.26!ZFPM2;;chr18:77155922..77155939,+!p1@NFATC1!1.06!28.65!NFATC1;;chr8:22550982..22550999,-!p1@EGR3!1.04!28.34!EGR3;;chr11:615942..615957,-!p1@IRF7!1.02!90.87!IRF7;;chr1:170632115..170632136,+!p9@PRRX1!1.02!9.55!PRRX1;;chr7:27205136..27205164,-!p1@HOXA9!1.02!9.55!HOXA9;;chr17:38256822..38256851,-!p1@NR1D1!1.00!72.70!NR1D1;;chr3:25470156..25470227,+!p2@RARB!1.00!8.93!RARB;;chr6:34204921..34204939,+!p3@HMGA1!0.99!271.38!HMGA1;;chr20:42543441..42543497,+!p1@TOX2!0.99!40.04!TOX2;;chr11:65667884..65667895,-!p2@FOSL1!0.99!34.81!FOSL1;;chr15:83953397..83953425,-!p1@BNC1!0.99!10.17!BNC1;;chr17:46622070..46622109,-!p1@HOXB2!0.98!19.41!HOXB2;;chr17:46655704..46655718,-!p2@HOXB4!0.98!12.94!HOXB4;;chr18:19749353..19749367,+!p4@GATA6!0.98!8.62!GATA6;;chr2:191878812..191878823,-!p2@STAT1!0.96!10.47!STAT1;;chr12:124873357..124873401,-!p1@NCOR2!0.95!94.87!NCOR2;;chr2:239756671..239756732,+!p1@TWIST2!0.95!26.49!TWIST2;;chr4:174451350..174451363,-!p3@HAND2!0.95!8.01!HAND2;;chr11:34642612..34642646,+!p1@EHF!0.95!8.01!EHF;;chr8:106330696..106330719,+!p2@ZFPM2!0.94!9.86!ZFPM2;;chr2:113993052..113993097,-!p2@PAX8!0.93!17.25!PAX8;;chr2:19558373..19558392,-!p1@OSR1!0.91!20.02!OSR1;;chr11:65686802..65686818,+!p6@DRAP1!0.91!12.63!DRAP1;;chr7:35293685..35293718,-!p1@TBX20!0.91!7.08!TBX20;;chr17:1958388..1958404,+!p1@HIC1!0.90!45.90!HIC1;;chr12:66218598..66218645,+!p2@HMGA2!0.90!33.58!HMGA2;;chr6:126240380..126240430,+!p2@NCOA7!0.90!18.79!NCOA7;;chr2:239756739..239756755,+!p2@TWIST2!0.90!12.32!TWIST2;;chr14:24630902..24630948,+!p2@IRF9!0.89!8.32!IRF9;;chr2:66662510..66662521,+!p6@MEIS1!0.89!6.78!MEIS1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.87!68.08!GLIS2;;chr17:1959369..1959388,+!p2@HIC1!0.87!17.87!HIC1;;chr5:158526459..158526481,-!p2@EBF1!0.87!8.62!EBF1;;chr7:1577899..1577943,+!p3@MAFK!0.87!6.47!MAFK;;chr17:48072574..48072597,-!p1@DLX3!0.87!6.47!DLX3;;chr12:54422217..54422239,+!p3@HOXC6!0.87!6.47!HOXC6;;chr19:16435625..16435682,+!p1@KLF2!0.86!213.78!KLF2;;chr5:92918919..92918942,+!p1@NR2F1!0.86!29.26!NR2F1;;chr8:77593474..77593612,+!p1@ZFHX4!0.85!27.41!ZFHX4;;chr1:170632959..170632987,+!p4@PRRX1!0.85!6.78!PRRX1;;chr1:170632051..170632081,+!p16@PRRX1!0.85!6.16!PRRX1;;chr9:16705069..16705086,-!p3@BNC2!0.85!6.16!BNC2;;chr11:64764402..64764413,-!p2@BATF2!0.85!6.16!BATF2;;chr12:54393880..54393962,+!p1@HOXC9!0.85!6.16!HOXC9;;chr19:42636586..42636607,-!p1@POU2F2!0.84!17.25!POU2F2;;chr19:13136130..13136165,+!p6@NFIX!0.84!8.01!NFIX;;chr18:53068911..53068935,-!p4@TCF4!0.84!6.78!TCF4;;chr3:25469815..25469866,+!p3@RARB!0.84!5.85!RARB;;chr10:8095593..8095625,+!p3@GATA3!0.83!6.78!GATA3;;chr15:67418119..67418162,+!p5@SMAD3!0.83!6.47!SMAD3;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.82!28.65!GLIS2;;chr17:46622114..46622138,-!p4@HOXB2!0.82!8.93!HOXB2;;chr17:6926362..6926377,+!p1@BCL6B!0.82!5.54!BCL6B;;chr1:37940170..37940190,+!p1@ZC3H12A!0.81!73.00!ZC3H12A;;chr12:53614115..53614154,-!p1@RARG!0.81!31.42!RARG;;chr11:65687362..65687436,+!p3@DRAP1!0.81!26.49!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!0.81!15.40!HMGA2;;chr2:145277882..145277967,-!p3@ZEB2!0.81!9.86!ZEB2;;chr17:46622205..46622218,-!p3@HOXB2!0.81!6.47!HOXB2;;chr17:46622440..46622477,-!p5@HOXB2!0.81!6.16!HOXB2;;chr10:8096631..8096660,+!p1@GATA3!0.80!6.47!GATA3;;chr19:13106214..13106382,+!p1@NFIX!0.79!129.37!NFIX;;chr7:14029283..14029311,-!p1@ETV1!0.79!29.57!ETV1;;chr12:54402745..54402788,+!p1@HOXC8!0.79!5.24!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.79!5.24!HOXC5;;chrY:21906594..21906622,-!p1@KDM5D!0.79!5.24!KDM5D;;chr2:66662249..66662267,+!p2@MEIS1!0.78!20.95!MEIS1;;chr2:66662281..66662308,+!p1@MEIS1!0.78!18.79!MEIS1;;chr10:94449675..94449694,+!p2@HHEX!0.78!14.48!HHEX;;chr15:67418047..67418093,+!p4@SMAD3!0.78!6.47!SMAD3;;chr19:45251943..45252006,+!p1@BCL3!0.77!140.46!BCL3;;chr20:42543506..42543549,+!p2@TOX2!0.77!12.63!TOX2;;chr1:170632477..170632506,+!p6@PRRX1!0.77!4.93!PRRX1;;chr19:49865646..49865718,-!p1@TEAD2!0.76!44.66!TEAD2;;chr15:96874927..96874938,+!p8@NR2F2!0.76!10.78!NR2F2;;chr11:65686732..65686756,+!p2@DRAP1!0.75!21.56!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.75!12.63!TWIST1;;chr18:19749517..19749531,+!p3@GATA6!0.75!8.62!GATA6;;chr11:65687222..65687240,+!p7@DRAP1!0.75!6.16!DRAP1;;chr14:29236269..29236285,+!p3@FOXG1!0.75!4.62!FOXG1;;chr15:67458491..67458505,+!p18@SMAD3!0.75!4.62!SMAD3;;chr11:65667846..65667868,-!p1@FOSL1!0.74!131.22!FOSL1;;chr7:139762641..139762768,-!p1@PARP12!0.74!69.00!PARP12;;chr7:26191809..26191890,+!p1@NFE2L3!0.73!23.72!NFE2L3;;chr11:65430554..65430579,-!p3@RELA!0.73!12.01!RELA;;chr17:46655730..46655791,-!p1@HOXB4!0.73!11.71!HOXB4;;chr17:46622229..46622257,-!p6@HOXB2!0.73!5.24!HOXB2;;chr7:14028488..14028516,-!p2@ETV1!0.73!4.93!ETV1;;chr2:66666432..66666462,+!p7@MEIS1!0.73!4.31!MEIS1;;chr9:132427883..132427951,+!p2@PRRX2!0.73!4.31!PRRX2;;chr19:3366570..3366619,+!p1@NFIC!0.72!154.63!NFIC;;chr12:57504975..57505019,-!p2@STAT6!0.72!19.10!STAT6;;chr3:25469724..25469773,+!p1@RARB!0.72!6.47!RARB;;chr6:126070769..126070801,+!p1@HEY2!0.72!4.93!HEY2;;chr3:52001448..52001478,-!p2@PCBP4!0.71!65.30!PCBP4;;chr1:154975258..154975330,+!p1@ZBTB7B!0.71!16.94!ZBTB7B;;chr12:27485762..27485776,+!p3@ARNTL2!0.71!12.01!ARNTL2;;chr12:124873852..124873881,-!p3@NCOR2!0.70!27.11!NCOR2;;chr17:38465413..38465438,+!p5@RARA!0.70!6.78!RARA;;chr6:36355513..36355578,-!p2@ETV7!0.70!5.24!ETV7;;chr10:8096772..8096787,+!p2@GATA3!0.70!4.93!GATA3;;chr11:65429891..65429915,-!p7@RELA!0.70!4.00!RELA;;chr12:54447637..54447659,+!p4@HOXC4!0.70!4.00!HOXC4;;chr14:29235961..29236008,+!p1@FOXG1!0.70!4.00!FOXG1;;chr15:67418177..67418204,+!p9@SMAD3!0.70!4.00!SMAD3;;chr21:38071430..38071456,+!p1@SIM2!0.70!4.00!SIM2;;chr3:52001426..52001447,-!p3@PCBP4!0.69!12.32!PCBP4;;chr7:44143925..44143970,+!p1@AEBP1!0.68!97.34!AEBP1;;chr5:72744594..72744609,-!p1@FOXD1!0.68!19.71!FOXD1;;chr1:158979792..158979814,+!p2@IFI16!0.67!40.97!IFI16;;chr20:48599506..48599526,+!p1@SNAI1!0.67!27.41!SNAI1;;chr17:41622925..41622976,-!p3@ETV4!0.67!5.85!ETV4;;chr11:65687243..65687276,+!p8@DRAP1!0.67!5.24!DRAP1;;chr12:54447599..54447630,+!p3@HOXC4!0.67!4.62!HOXC4;;chr6:126240356..126240379,+!p7@NCOA7!0.67!4.62!NCOA7;;chr8:22550530..22550609,-!p2@EGR3!0.67!3.70!EGR3;;chr2:102091144..102091183,-!p2@RFX8!0.67!3.70!RFX8;;chr3:25470062..25470084,+!p4@RARB!0.67!3.70!RARB;;chrY:2803415..2803468,+!p1@ZFY!0.67!3.70!ZFY;;chr20:47894569..47894799,-!p1@ZNFX1!0.66!111.51!ZNFX1;;chr12:66218836..66218888,+!p1@HMGA2!0.66!39.12!HMGA2;;chr2:145275162..145275202,-!p2@ZEB2!0.66!24.03!ZEB2;;chr6:1610293..1610310,+!p1@FOXC1!0.66!6.47!FOXC1;;chr12:56753869..56753930,-!p1@STAT2!0.65!180.51!STAT2;;chr4:4861385..4861398,+!p1@MSX1!0.65!11.71!MSX1;;chr12:53625966..53626012,-!p2@RARG!0.65!10.17!RARG;;chr17:38256799..38256815,-!p3@NR1D1!0.65!6.78!NR1D1;;chr2:191878874..191878938,-!p1@STAT1!0.64!216.24!STAT1;;chr2:231084659..231084721,-!p1@SP110!0.64!92.10!SP110;;chr2:28616337..28616355,+!p2@FOSL2!0.64!70.23!FOSL2;;chr2:231280954..231280965,+!p2@SP100!0.64!6.78!SP100;;chr17:46688334..46688385,-!p1@HOXB7!0.64!5.24!HOXB7;;chr6:1389789..1389821,+!p1@FOXF2!0.64!4.93!FOXF2;;chr7:27192185..27192209,-!p1@HOXA3!0.64!3.39!HOXA3;;chr18:45663490..45663528,-!p2@ZBTB7C!0.64!3.39!ZBTB7C;;chr1:170632028..170632043,+!p20@PRRX1!0.64!3.39!PRRX1;;chr9:14314476..14314487,-!p9@NFIB!0.64!3.39!NFIB;;chr1:8938709..8938720,-!p3@ENO1!0.63!186.98!ENO1;;chr11:128563948..128564003,+!p1@FLI1!0.63!46.21!FLI1;;chr19:3359591..3359667,+!p2@NFIC!0.63!44.36!NFIC;;chr3:187463220..187463232,-!p3@BCL6!0.63!11.09!BCL6;;chr12:96588368..96588394,+!p3@ELK3!0.63!9.86!ELK3;;chr6:85474299..85474324,-!p1@TBX18!0.63!6.47!TBX18;;chr3:141087393..141087426,+!p3@ZBTB38!0.62!14.79!ZBTB38;;chr1:221052733..221052749,+!p2@HLX!0.62!4.31!HLX;;chr6:135502501..135502546,+!p1@MYB!0.62!4.00!MYB;;chr19:1863568..1863586,-!p1@KLF16!0.61!122.29!KLF16;;chr9:14314566..14314618,-!p1@NFIB!0.61!44.66!NFIB;;chr12:54772960..54773015,-!p3@ZNF385A!0.61!17.56!ZNF385A;;chr3:114343768..114343822,-!p1@ZBTB20!0.61!15.71!ZBTB20;;chr14:61116183..61116208,-!p1@SIX1!0.61!13.55!SIX1;;chr11:61520075..61520136,+!p1@C11orf9!0.61!7.39!C11orf9;;chr12:53614155..53614187,-!p3@RARG!0.61!6.78!RARG;;chr11:125034605..125034636,+!p2@PKNOX2!0.61!3.08!PKNOX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.61!3.08!PKNOX2;;chr11:46333934..46333963,+!p5@CREB3L1!0.61!3.08!CREB3L1;;chr1:170632137..170632172,+!p10@PRRX1!0.61!3.08!PRRX1;;chr1:170633294..170633303,+!p23@PRRX1!0.61!3.08!PRRX1;;chr2:85981027..85981047,+!p8@ATOH8!0.61!3.08!ATOH8;;chr2:85981969..85982019,+!p6@ATOH8!0.61!3.08!ATOH8;;chr16:51185172..51185197,-!p1@SALL1!0.61!3.08!SALL1;;chr19:13136057..13136085,+!p11@NFIX!0.61!3.08!NFIX;;chr6:7108569..7108683,+!p3@RREB1!0.60!13.86!RREB1;;chr18:3450293..3450304,+!p4@TGIF1!0.60!8.32!TGIF1;;chr22:38598042..38598052,+!p4@MAFF!0.60!5.24!MAFF;;chr11:65686776..65686787,+!p9@DRAP1!0.60!3.70!DRAP1;;chr11:65687158..65687216,+!p4@DRAP1!0.59!19.71!DRAP1;;chr9:35732647..35732678,+!p2@CREB3!0.59!19.41!CREB3;;chr5:72744445..72744466,-!p2@FOXD1!0.59!5.24!FOXD1;;chr6:10412600..10412637,-!p1@TFAP2A!0.59!5.24!TFAP2A;;chr8:48650715..48650735,-!p1@CEBPD!0.58!438.64!CEBPD;;chr10:114709999..114710031,+!p1@TCF7L2!0.58!81.94!TCF7L2;;chr2:145277640..145277771,-!p1@ZEB2!0.58!45.90!ZEB2;;chr19:45252008..45252024,+!p2@BCL3!0.58!10.78!BCL3;;chr1:158979872..158979898,+!p3@IFI16!0.58!10.17!IFI16;;chr3:52001396..52001425,-!p4@PCBP4!0.58!5.54!PCBP4;;chr2:119605214..119605230,-!p1@EN1!0.58!2.77!EN1;;chr11:46299443..46299459,+!p4@CREB3L1!0.58!2.77!CREB3L1;;chr13:45010776..45010795,-!p13@TSC22D1!0.58!2.77!TSC22D1;;chr8:40755333..40755352,-!p1@ZMAT4!0.58!2.77!ZMAT4;;chr19:46801639..46801699,+!p1@HIF3A!0.58!2.77!HIF3A;;chr1:170632250..170632277,+!p7@PRRX1!0.58!2.77!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.58!2.77!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.58!2.77!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.58!2.77!PRRX1;;chr15:67458861..67458879,+!p17@SMAD3!0.58!2.77!SMAD3;;chr16:31076332..31076388,-!p3@ZNF668!0.58!2.77!ZNF668;;chr16:51185318..51185348,-!p2@SALL1!0.58!2.77!SALL1;;chr16:67198633..67198671,+!p1@HSF4!0.58!2.77!HSF4;;chr17:41622731..41622764,-!p5@ETV4!0.58!2.77!ETV4;;chr19:13135582..13135600,+!p3@NFIX!0.58!2.77!NFIX;;chr6:34204672..34204692,+!p1@HMGA1!0.57!380.73!HMGA1;;chr15:67357924..67357952,+!p2@SMAD3!0.57!21.87!SMAD3;;chr17:46621937..46621966,-!p2@HOXB2!0.57!8.62!HOXB2;;chr13:37494365..37494381,-!p1@SMAD9!0.57!5.24!SMAD9;;chr19:31840130..31840160,-!p2@TSHZ3!0.57!4.62!TSHZ3;;chr3:187463248..187463264,-!p1@BCL6!0.56!69.92!BCL6;;chr10:63809106..63809127,+!p1@ARID5B!0.56!44.66!ARID5B;;chr21:44394645..44394737,+!p1@PKNOX1!0.56!27.41!PKNOX1;;chr3:101546827..101546847,+!p2@NFKBIZ!0.56!4.00!NFKBIZ;;chr7:149470540..149470596,-!p2@ZNF467!0.56!3.70!ZNF467;;chr6:10415276..10415341,-!p2@TFAP2A!0.56!3.39!TFAP2A;;chr3:141105705..141105770,+!p4@ZBTB38!0.56!3.39!ZBTB38;;chr8:128748470..128748487,+!p1@MYC!0.55!354.24!MYC;;chr3:101568349..101568365,+!p1@NFKBIZ!0.55!168.80!NFKBIZ;;chr22:38598086..38598105,+!p1@MAFF!0.55!34.19!MAFF;;chr22:38597987..38598021,+!p2@MAFF!0.55!19.41!MAFF;;chr6:19837592..19837621,+!p1@ID4!0.55!19.10!ID4;;chr1:158979851..158979865,+!p5@IFI16!0.55!6.47!IFI16;;chr7:44143978..44143989,+!p2@AEBP1!0.55!5.24!AEBP1;;chr8:128748308..128748324,+!p2@MYC!0.54!88.10!MYC;;chr4:38665810..38665827,+!p1@KLF3!0.54!45.59!KLF3;;chr19:1863591..1863611,-!p2@KLF16!0.54!29.88!KLF16;;chr16:86600870..86600921,+!p2@FOXC2!0.54!2.46!FOXC2;;chr17:46682321..46682362,-!p1@HOXB6!0.54!2.46!HOXB6;;chr18:19749504..19749515,+!p5@GATA6!0.54!2.46!GATA6;;chr10:114710430..114710470,+!p30@TCF7L2!0.54!2.46!TCF7L2;;chr11:31832658..31832681,-!p1@PAX6!0.54!2.46!PAX6;;chr12:54422245..54422263,+!p7@HOXC6!0.54!2.46!HOXC6;;chr5:142780189..142780223,-!p6@NR3C1!0.54!2.46!NR3C1;;chr5:50679228..50679288,+!p1@ISL1!0.54!2.46!ISL1;;chr7:150945663..150945692,-!p5@SMARCD3!0.54!2.46!SMARCD3;;chr20:47894852..47894860,-!p25@ZNFX1!0.54!2.46!ZNFX1;;chr5:131826457..131826514,-!p1@IRF1!0.53!120.44!IRF1;;chr12:3069037..3069119,+!p2@TEAD4!0.53!10.17!TEAD4;;chr17:3571863..3571881,-!p1@TAX1BP3!0.52!213.47!TAX1BP3;;chr20:306489..306564,+!p1@SOX12!0.52!32.65!SOX12;;chr19:55987963..55987996,+!p1@ZNF628!0.52!22.18!ZNF628;;chr20:32274179..32274213,-!p1@E2F1!0.52!19.71!E2F1;;chr9:14314522..14314556,-!p3@NFIB!0.52!6.47!NFIB;;chr9:4299979..4299996,-!p3@GLIS3!0.52!4.31!GLIS3;;chr3:168864315..168864339,-!p2@MECOM!0.52!4.31!MECOM;;chr10:104155659..104155676,+!p4@NFKB2!0.52!3.08!NFKB2;;chr3:185826286..185826318,-!p5@ETV5!0.52!2.77!ETV5;;chr6:130339710..130339745,+!p1@L3MBTL3!0.51!22.79!L3MBTL3;;chr15:90544532..90544563,+!p1@ZNF710!0.51!5.24!ZNF710;;chrX:48900782..48900793,-!p3@TFE3!0.51!4.93!TFE3;;chr1:221052776..221052799,+!p1@HLX!0.51!4.62!HLX;;chr7:44143997..44144008,+!p3@AEBP1!0.51!3.08!AEBP1;;chr11:19263160..19263176,-!p1@E2F8!0.51!2.77!E2F8;;chr2:85980919..85980942,+!p4@ATOH8!0.51!2.46!ATOH8;;chr3:157823517..157823562,-!p1@SHOX2!0.51!2.46!SHOX2;;chr15:67358163..67358192,+!p1@SMAD3!0.50!67.46!SMAD3;;chr1:151032860..151032918,+!p1@MLLT11!0.50!33.88!MLLT11;;chr8:48650697..48650708,-!p2@CEBPD!0.50!21.56!CEBPD;;chr9:16870710..16870763,-!p1@BNC2!0.50!4.31!BNC2;;chr10:22292591..22292606,-!p2@DNAJC1!0.50!4.00!DNAJC1;;chr4:81118647..81118666,+!p1@PRDM8!0.50!3.08!PRDM8;;chr5:92920256..92920282,+!p7@NR2F1!0.50!2.77!NR2F1;;chr6:85473156..85473210,-!p2@TBX18!0.50!2.77!TBX18;;chr7:27196267..27196311,-!p1@HOXA7!0.50!2.16!HOXA7;;chr8:106330543..106330554,+!p4@ZFPM2!0.50!2.16!ZFPM2;;chr8:55370720..55370733,+!p2@SOX17!0.50!2.16!SOX17;;chr1:170632683..170632696,+!p12@PRRX1!0.50!2.16!PRRX1;;chr17:46655672..46655697,-!p3@HOXB4!0.50!2.16!HOXB4;;chr19:13135386..13135435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|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
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|fonse_cell_line_closure=
Line 67: Line 43:
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|fonse_treatment_closure=
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|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor1.CNhs11085.11283-116I5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor1.CNhs11085.11283-116I5.hg38.nobarcode.ctss.bed.gz
|id=FF:11283-116I5
|is_a=EFO:0002091;;FF:0000168
|is_obsolete=
|library_id=CNhs11085
|library_id_phase_based=2:CNhs11085
|microRNAs=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11283
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.GTAGAG.11283
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11283
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.GTAGAG.11283
|name=Smooth Muscle Cells - Aortic, donor1
|namespace=FANTOM5
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|rna_box=116
|rna_catalog_number=CA354-R10a
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1401(1)
|rna_od260/230=
|rna_od260/280=
|rna_position=I5
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=116I5
|rna_weight_ug=10
|rnaseq_library_id=SRhi10008.GTAGAG
|sample_age=39
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=smooth muscle cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=39 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=H
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.22187501976124e-211!GO:0005737;cytoplasm;1.89630849258975e-177!GO:0043231;intracellular membrane-bound organelle;1.38367775189716e-167!GO:0043227;membrane-bound organelle;2.79591849047322e-167!GO:0043226;organelle;2.32386931614339e-166!GO:0043229;intracellular organelle;4.69895178624503e-166!GO:0044444;cytoplasmic part;1.07592082876652e-123!GO:0044422;organelle part;6.00806870506192e-115!GO:0044446;intracellular organelle part;1.44673787978474e-113!GO:0005515;protein binding;4.2716331287171e-93!GO:0044238;primary metabolic process;1.81385154533427e-81!GO:0032991;macromolecular complex;2.57653195627689e-81!GO:0044237;cellular metabolic process;1.61469226345138e-79!GO:0043170;macromolecule metabolic process;3.71929782222696e-77!GO:0030529;ribonucleoprotein complex;7.36159642398757e-71!GO:0043233;organelle lumen;1.18110391438123e-63!GO:0031974;membrane-enclosed lumen;1.18110391438123e-63!GO:0005634;nucleus;4.40119790885515e-62!GO:0044428;nuclear part;3.88864302064313e-59!GO:0003723;RNA binding;6.65837555325945e-59!GO:0019538;protein metabolic process;2.20979982125572e-52!GO:0005739;mitochondrion;4.41246174600857e-51!GO:0031090;organelle membrane;7.72090374039775e-47!GO:0044260;cellular macromolecule metabolic process;5.75380302274525e-46!GO:0044267;cellular protein metabolic process;1.44940288616152e-45!GO:0016043;cellular component organization and biogenesis;6.26995175182076e-45!GO:0006412;translation;8.24544571509794e-45!GO:0005840;ribosome;7.24194617459322e-44!GO:0015031;protein transport;1.47475618814935e-41!GO:0043234;protein complex;4.10133106226711e-41!GO:0043283;biopolymer metabolic process;5.71061043420371e-41!GO:0033036;macromolecule localization;1.92949501484922e-40!GO:0031981;nuclear lumen;2.14867028797272e-39!GO:0003735;structural constituent of ribosome;2.27440881027876e-39!GO:0045184;establishment of protein localization;6.52544762903616e-39!GO:0005829;cytosol;4.63921631568867e-38!GO:0008104;protein localization;6.27777225537877e-38!GO:0010467;gene expression;1.66296125331696e-37!GO:0009059;macromolecule biosynthetic process;1.86524516977571e-36!GO:0009058;biosynthetic process;2.40395776458911e-36!GO:0006396;RNA processing;5.08158118792679e-36!GO:0044429;mitochondrial part;1.75559749378259e-35!GO:0044249;cellular biosynthetic process;5.79153267261213e-34!GO:0033279;ribosomal subunit;6.66802380102186e-34!GO:0031967;organelle envelope;4.78569009206717e-33!GO:0031975;envelope;1.04484265134337e-32!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.73920980738578e-32!GO:0046907;intracellular transport;4.36766999414834e-32!GO:0016071;mRNA metabolic process;1.01611488466478e-29!GO:0065003;macromolecular complex assembly;2.41208679142146e-28!GO:0006886;intracellular protein transport;5.10207239888829e-28!GO:0008380;RNA splicing;2.01842354147104e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.04065581226326e-26!GO:0006996;organelle organization and biogenesis;3.22801173266111e-26!GO:0022607;cellular component assembly;1.78788683432296e-25!GO:0006397;mRNA processing;4.38349538251045e-25!GO:0005654;nucleoplasm;6.09980757992184e-25!GO:0005740;mitochondrial envelope;2.29916078311815e-24!GO:0031966;mitochondrial membrane;5.65018690508498e-23!GO:0005783;endoplasmic reticulum;1.22608967277882e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.0303920161459e-22!GO:0008134;transcription factor binding;4.65878759489034e-22!GO:0043228;non-membrane-bound organelle;5.96706290089396e-22!GO:0043232;intracellular non-membrane-bound organelle;5.96706290089396e-22!GO:0044445;cytosolic part;2.59454587379524e-21!GO:0016462;pyrophosphatase activity;3.74284113864842e-21!GO:0044451;nucleoplasm part;4.55254839038775e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.71266421237175e-21!GO:0017111;nucleoside-triphosphatase activity;7.39449560236488e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;7.44366056217323e-21!GO:0019866;organelle inner membrane;1.24424607693837e-20!GO:0051649;establishment of cellular localization;1.92947099930582e-20!GO:0051641;cellular localization;3.16579312364582e-20!GO:0012505;endomembrane system;6.91771599565002e-20!GO:0005794;Golgi apparatus;1.13649985218629e-19!GO:0000166;nucleotide binding;1.27981109767022e-19!GO:0006119;oxidative phosphorylation;1.54407804555681e-19!GO:0005743;mitochondrial inner membrane;3.21071665237874e-19!GO:0005681;spliceosome;3.23208827273521e-19!GO:0006457;protein folding;1.45705376853425e-18!GO:0003676;nucleic acid binding;5.3576086364938e-18!GO:0006259;DNA metabolic process;1.91987411513754e-17!GO:0048770;pigment granule;1.97223065890311e-17!GO:0042470;melanosome;1.97223065890311e-17!GO:0015935;small ribosomal subunit;1.98689739742768e-17!GO:0015934;large ribosomal subunit;2.47657381933706e-17!GO:0016874;ligase activity;4.91230697604122e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.50096830183739e-16!GO:0016070;RNA metabolic process;3.30368143123472e-16!GO:0006512;ubiquitin cycle;3.39573107301514e-16!GO:0044455;mitochondrial membrane part;7.2390793538272e-16!GO:0044265;cellular macromolecule catabolic process;9.84133664530638e-16!GO:0044432;endoplasmic reticulum part;1.76821896445731e-15!GO:0005730;nucleolus;2.24870550065101e-15!GO:0006605;protein targeting;2.37657691899852e-15!GO:0043285;biopolymer catabolic process;5.07350191498945e-15!GO:0032553;ribonucleotide binding;5.90021935808645e-15!GO:0032555;purine ribonucleotide binding;5.90021935808645e-15!GO:0003712;transcription cofactor activity;7.06808102653935e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;8.99636655032809e-15!GO:0019941;modification-dependent protein catabolic process;1.2881292061956e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.2881292061956e-14!GO:0043412;biopolymer modification;1.57176279009001e-14!GO:0017076;purine nucleotide binding;1.78714998579538e-14!GO:0009057;macromolecule catabolic process;1.7932267026659e-14!GO:0012501;programmed cell death;2.55262259754616e-14!GO:0044257;cellular protein catabolic process;2.69485959014009e-14!GO:0006511;ubiquitin-dependent protein catabolic process;3.16188545994054e-14!GO:0005746;mitochondrial respiratory chain;4.38034280777499e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.92381821054776e-14!GO:0031980;mitochondrial lumen;4.9695354951217e-14!GO:0005759;mitochondrial matrix;4.9695354951217e-14!GO:0006915;apoptosis;5.79856546059097e-14!GO:0022618;protein-RNA complex assembly;8.02746166435167e-14!GO:0007049;cell cycle;1.14470651621666e-13!GO:0030163;protein catabolic process;1.41386537047048e-13!GO:0006366;transcription from RNA polymerase II promoter;1.51277170755311e-13!GO:0050794;regulation of cellular process;1.75279382666354e-13!GO:0048523;negative regulation of cellular process;1.80377962911524e-13!GO:0006464;protein modification process;2.32959844577938e-13!GO:0048193;Golgi vesicle transport;3.60382130047952e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.87679453164473e-13!GO:0051186;cofactor metabolic process;4.51112371457828e-13!GO:0008219;cell death;5.1340228511744e-13!GO:0016265;death;5.1340228511744e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.25693553648631e-13!GO:0051082;unfolded protein binding;9.24948563338998e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.93340389301682e-12!GO:0003954;NADH dehydrogenase activity;1.93340389301682e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.93340389301682e-12!GO:0016192;vesicle-mediated transport;3.23408155520212e-12!GO:0008135;translation factor activity, nucleic acid binding;4.19897285408806e-12!GO:0005793;ER-Golgi intermediate compartment;4.25812490021356e-12!GO:0044248;cellular catabolic process;4.37716384355606e-12!GO:0048519;negative regulation of biological process;9.76237413364272e-12!GO:0005524;ATP binding;1.27921893664839e-11!GO:0006913;nucleocytoplasmic transport;2.37172468590334e-11!GO:0032559;adenyl ribonucleotide binding;2.60472486172205e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.77612918833369e-11!GO:0043687;post-translational protein modification;3.21600168832976e-11!GO:0042775;organelle ATP synthesis coupled electron transport;4.98141721986664e-11!GO:0042773;ATP synthesis coupled electron transport;4.98141721986664e-11!GO:0005761;mitochondrial ribosome;6.13212370853129e-11!GO:0000313;organellar ribosome;6.13212370853129e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;6.13295251293753e-11!GO:0030964;NADH dehydrogenase complex (quinone);6.26305994537269e-11!GO:0045271;respiratory chain complex I;6.26305994537269e-11!GO:0005747;mitochondrial respiratory chain complex I;6.26305994537269e-11!GO:0051169;nuclear transport;7.33257225987969e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.70110777286646e-11!GO:0048522;positive regulation of cellular process;9.26731201667779e-11!GO:0030554;adenyl nucleotide binding;9.77255659437537e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.54811323981436e-10!GO:0000375;RNA splicing, via transesterification reactions;1.54811323981436e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.54811323981436e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.84886261133041e-10!GO:0003924;GTPase activity;1.94123008891925e-10!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.02092510936892e-10!GO:0005789;endoplasmic reticulum membrane;2.35731547417107e-10!GO:0016604;nuclear body;2.68360899772884e-10!GO:0006732;coenzyme metabolic process;2.70838565236897e-10!GO:0006323;DNA packaging;2.84556550175529e-10!GO:0008639;small protein conjugating enzyme activity;3.81039622719471e-10!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.3844137109268e-10!GO:0022402;cell cycle process;5.89394861374211e-10!GO:0004842;ubiquitin-protein ligase activity;9.12842631842863e-10!GO:0003743;translation initiation factor activity;9.12842631842863e-10!GO:0043067;regulation of programmed cell death;1.04479046937465e-09!GO:0019787;small conjugating protein ligase activity;1.13712217580416e-09!GO:0050789;regulation of biological process;1.21262999942788e-09!GO:0005635;nuclear envelope;1.26240091652253e-09!GO:0042981;regulation of apoptosis;1.26585975252228e-09!GO:0017038;protein import;1.50107307075308e-09!GO:0009055;electron carrier activity;1.52522079486839e-09!GO:0009259;ribonucleotide metabolic process;1.98765514184246e-09!GO:0042254;ribosome biogenesis and assembly;2.0158070234212e-09!GO:0051276;chromosome organization and biogenesis;2.11960896309505e-09!GO:0006163;purine nucleotide metabolic process;2.81807858771945e-09!GO:0031965;nuclear membrane;3.57571986541788e-09!GO:0009150;purine ribonucleotide metabolic process;4.21506867541231e-09!GO:0016887;ATPase activity;4.51793240130762e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.69407924166965e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.21613641810092e-09!GO:0006461;protein complex assembly;5.5216398448622e-09!GO:0016563;transcription activator activity;5.98221159166908e-09!GO:0044453;nuclear membrane part;6.13265139742515e-09!GO:0000278;mitotic cell cycle;7.39251657861757e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.7895760711141e-09!GO:0006413;translational initiation;1.0133287258352e-08!GO:0006446;regulation of translational initiation;1.0719416876488e-08!GO:0043069;negative regulation of programmed cell death;1.4471919449051e-08!GO:0042623;ATPase activity, coupled;1.448692206065e-08!GO:0016881;acid-amino acid ligase activity;1.56594598315977e-08!GO:0006164;purine nucleotide biosynthetic process;1.62074886426876e-08!GO:0044431;Golgi apparatus part;1.63572542963865e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.70597345542416e-08!GO:0008565;protein transporter activity;1.71261714425426e-08!GO:0051246;regulation of protein metabolic process;2.17611040251278e-08!GO:0016564;transcription repressor activity;2.2887658421127e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.31793950268246e-08!GO:0043066;negative regulation of apoptosis;3.08601669783329e-08!GO:0009260;ribonucleotide biosynthetic process;3.08601669783329e-08!GO:0030120;vesicle coat;3.79033576911399e-08!GO:0030662;coated vesicle membrane;3.79033576911399e-08!GO:0016607;nuclear speck;3.92254648243301e-08!GO:0009199;ribonucleoside triphosphate metabolic process;5.18673597713354e-08!GO:0005788;endoplasmic reticulum lumen;5.30659345284254e-08!GO:0048518;positive regulation of biological process;5.5719120531206e-08!GO:0006916;anti-apoptosis;5.75872785743661e-08!GO:0003714;transcription corepressor activity;5.93488118590571e-08!GO:0051726;regulation of cell cycle;6.79989749093243e-08!GO:0005768;endosome;6.90455761142076e-08!GO:0009141;nucleoside triphosphate metabolic process;7.14351014900012e-08!GO:0015986;ATP synthesis coupled proton transport;7.47355956137181e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.47355956137181e-08!GO:0006333;chromatin assembly or disassembly;7.52819763302448e-08!GO:0004386;helicase activity;7.95950816244866e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.29946626064789e-08!GO:0009144;purine nucleoside triphosphate metabolic process;9.29946626064789e-08!GO:0000074;regulation of progression through cell cycle;9.31160458104483e-08!GO:0003713;transcription coactivator activity;9.39856801032753e-08!GO:0065004;protein-DNA complex assembly;1.12812771873934e-07!GO:0048475;coated membrane;1.54155056431039e-07!GO:0030117;membrane coat;1.54155056431039e-07!GO:0006399;tRNA metabolic process;1.75863497188939e-07!GO:0009056;catabolic process;1.77368638941352e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.92045506506582e-07!GO:0016023;cytoplasmic membrane-bound vesicle;2.17547236605938e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.46633101376872e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.46633101376872e-07!GO:0051170;nuclear import;2.67348961794454e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.67348961794454e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.69285023617919e-07!GO:0031988;membrane-bound vesicle;2.7755612726999e-07!GO:0046034;ATP metabolic process;3.07642919018337e-07!GO:0009060;aerobic respiration;3.15639378047289e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.15639378047289e-07!GO:0004812;aminoacyl-tRNA ligase activity;3.15639378047289e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.15639378047289e-07!GO:0008026;ATP-dependent helicase activity;3.45191850188789e-07!GO:0019829;cation-transporting ATPase activity;3.46429578670057e-07!GO:0006606;protein import into nucleus;3.49015199751124e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.49425044482697e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.43192683969562e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.43192683969562e-07!GO:0000785;chromatin;4.58316432818185e-07!GO:0005643;nuclear pore;5.02268245107306e-07!GO:0005667;transcription factor complex;8.60997620684883e-07!GO:0051188;cofactor biosynthetic process;8.71156906544629e-07!GO:0005694;chromosome;8.73504821311065e-07!GO:0043038;amino acid activation;8.73504821311065e-07!GO:0006418;tRNA aminoacylation for protein translation;8.73504821311065e-07!GO:0043039;tRNA aminoacylation;8.73504821311065e-07!GO:0005773;vacuole;1.03963161371425e-06!GO:0065007;biological regulation;1.22181692515424e-06!GO:0006754;ATP biosynthetic process;1.2425598882311e-06!GO:0006753;nucleoside phosphate metabolic process;1.2425598882311e-06!GO:0006793;phosphorus metabolic process;1.41164962514275e-06!GO:0006796;phosphate metabolic process;1.41164962514275e-06!GO:0006974;response to DNA damage stimulus;1.50207923946265e-06!GO:0045333;cellular respiration;1.54799577583333e-06!GO:0031324;negative regulation of cellular metabolic process;1.66850851311798e-06!GO:0005525;GTP binding;1.8582406180972e-06!GO:0000139;Golgi membrane;1.86699356530929e-06!GO:0016787;hydrolase activity;2.10340676119769e-06!GO:0004298;threonine endopeptidase activity;2.19654583952531e-06!GO:0044440;endosomal part;2.26925063928114e-06!GO:0010008;endosome membrane;2.26925063928114e-06!GO:0016568;chromatin modification;2.27252480955029e-06!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.27252480955029e-06!GO:0065002;intracellular protein transport across a membrane;2.37339611342161e-06!GO:0045941;positive regulation of transcription;2.58083145905243e-06!GO:0044427;chromosomal part;2.72251707554922e-06!GO:0007243;protein kinase cascade;3.35138503915383e-06!GO:0009117;nucleotide metabolic process;4.05514138366505e-06!GO:0006364;rRNA processing;4.13901683376091e-06!GO:0046930;pore complex;4.13901683376091e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.24140929877709e-06!GO:0016072;rRNA metabolic process;5.77332483664893e-06!GO:0031410;cytoplasmic vesicle;5.9563780529357e-06!GO:0031982;vesicle;6.00890281591211e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.12638925116855e-06!GO:0030532;small nuclear ribonucleoprotein complex;6.84854344774242e-06!GO:0016740;transferase activity;7.06777196058916e-06!GO:0016779;nucleotidyltransferase activity;8.68265798179635e-06!GO:0045893;positive regulation of transcription, DNA-dependent;8.80582297363639e-06!GO:0006334;nucleosome assembly;1.03780471344447e-05!GO:0019222;regulation of metabolic process;1.05294150556456e-05!GO:0016567;protein ubiquitination;1.05678677445994e-05!GO:0019867;outer membrane;1.05678677445994e-05!GO:0032446;protein modification by small protein conjugation;1.08014856345566e-05!GO:0000323;lytic vacuole;1.10203539514431e-05!GO:0005764;lysosome;1.10203539514431e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.10203539514431e-05!GO:0016310;phosphorylation;1.12251628037141e-05!GO:0005770;late endosome;1.25037237319985e-05!GO:0051427;hormone receptor binding;1.27766450622212e-05!GO:0031252;leading edge;1.29030004625344e-05!GO:0045259;proton-transporting ATP synthase complex;1.31215603639357e-05!GO:0006099;tricarboxylic acid cycle;1.34025475307279e-05!GO:0046356;acetyl-CoA catabolic process;1.34025475307279e-05!GO:0031968;organelle outer membrane;1.38061088825725e-05!GO:0031497;chromatin assembly;1.4712881645069e-05!GO:0032561;guanyl ribonucleotide binding;1.49588307299223e-05!GO:0019001;guanyl nucleotide binding;1.49588307299223e-05!GO:0051187;cofactor catabolic process;1.57048005684983e-05!GO:0005798;Golgi-associated vesicle;1.5730058291138e-05!GO:0003697;single-stranded DNA binding;1.90221856794642e-05!GO:0045786;negative regulation of progression through cell cycle;1.95667009146826e-05!GO:0005905;coated pit;1.95850768694681e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.95850768694681e-05!GO:0009892;negative regulation of metabolic process;1.99149857460059e-05!GO:0009108;coenzyme biosynthetic process;2.06695215864353e-05!GO:0009719;response to endogenous stimulus;2.39570222581792e-05!GO:0016491;oxidoreductase activity;2.42877410957404e-05!GO:0035257;nuclear hormone receptor binding;2.66727726984046e-05!GO:0006084;acetyl-CoA metabolic process;2.9773427307503e-05!GO:0008361;regulation of cell size;2.9773427307503e-05!GO:0003724;RNA helicase activity;3.11974409823541e-05!GO:0030867;rough endoplasmic reticulum membrane;3.36820523046483e-05!GO:0050657;nucleic acid transport;3.36820523046483e-05!GO:0051236;establishment of RNA localization;3.36820523046483e-05!GO:0050658;RNA transport;3.36820523046483e-05!GO:0007067;mitosis;3.44637565855698e-05!GO:0000087;M phase of mitotic cell cycle;3.51971535774018e-05!GO:0006752;group transfer coenzyme metabolic process;3.52205029680734e-05!GO:0009109;coenzyme catabolic process;3.74222575883235e-05!GO:0006403;RNA localization;3.7501483598756e-05!GO:0016049;cell growth;3.90111564321894e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.98842630842626e-05!GO:0007005;mitochondrion organization and biogenesis;4.04459194094483e-05!GO:0005741;mitochondrial outer membrane;4.58322678862781e-05!GO:0000151;ubiquitin ligase complex;4.65881931489164e-05!GO:0005769;early endosome;4.66447927307664e-05!GO:0009967;positive regulation of signal transduction;4.70706284548725e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.05447213852552e-05!GO:0001558;regulation of cell growth;5.3658120295155e-05!GO:0006613;cotranslational protein targeting to membrane;5.41578183955641e-05!GO:0043623;cellular protein complex assembly;5.57644813926804e-05!GO:0006281;DNA repair;6.02400224999843e-05!GO:0000245;spliceosome assembly;6.50508373981606e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.71594567763354e-05!GO:0022403;cell cycle phase;6.84091803761698e-05!GO:0051789;response to protein stimulus;7.0140921855377e-05!GO:0006986;response to unfolded protein;7.0140921855377e-05!GO:0048468;cell development;7.41811514038192e-05!GO:0016481;negative regulation of transcription;7.43015901967602e-05!GO:0006260;DNA replication;8.07506729275737e-05!GO:0045454;cell redox homeostasis;0.000101311370913615!GO:0005048;signal sequence binding;0.000102110949324994!GO:0043566;structure-specific DNA binding;0.00010520132950936!GO:0030029;actin filament-based process;0.000112399415491715!GO:0016853;isomerase activity;0.00013562316396858!GO:0033116;ER-Golgi intermediate compartment membrane;0.00013844011341358!GO:0019843;rRNA binding;0.000156185841212885!GO:0008654;phospholipid biosynthetic process;0.000180347725573458!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000216189540678436!GO:0051301;cell division;0.000246694617121097!GO:0005762;mitochondrial large ribosomal subunit;0.000270821080541273!GO:0000315;organellar large ribosomal subunit;0.000270821080541273!GO:0006091;generation of precursor metabolites and energy;0.000361452490214402!GO:0030663;COPI coated vesicle membrane;0.000363821821153505!GO:0030126;COPI vesicle coat;0.000363821821153505!GO:0019899;enzyme binding;0.000371144362262484!GO:0006612;protein targeting to membrane;0.000413908147600694!GO:0005791;rough endoplasmic reticulum;0.000437815089394865!GO:0007264;small GTPase mediated signal transduction;0.000446706573575424!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000486290726877559!GO:0009893;positive regulation of metabolic process;0.000532662537023418!GO:0005885;Arp2/3 protein complex;0.000534899206641528!GO:0008186;RNA-dependent ATPase activity;0.000546489114484097!GO:0009615;response to virus;0.000563860941099974!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000584063560711341!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00061950931975477!GO:0016859;cis-trans isomerase activity;0.000629724744554251!GO:0015980;energy derivation by oxidation of organic compounds;0.000660079747094347!GO:0065009;regulation of a molecular function;0.000682044492606701!GO:0030659;cytoplasmic vesicle membrane;0.000703725636947681!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000722710959932602!GO:0051028;mRNA transport;0.000804059345154655!GO:0043021;ribonucleoprotein binding;0.000824990154491079!GO:0048471;perinuclear region of cytoplasm;0.000825546273371797!GO:0051329;interphase of mitotic cell cycle;0.000829891943567808!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000841463370424094!GO:0030137;COPI-coated vesicle;0.000942853761233154!GO:0015630;microtubule cytoskeleton;0.00100938931569003!GO:0007010;cytoskeleton organization and biogenesis;0.0010119882964137!GO:0016044;membrane organization and biogenesis;0.00106116396208201!GO:0030133;transport vesicle;0.00108623909257729!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00111585296567973!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00126126883677968!GO:0051920;peroxiredoxin activity;0.00126739965478006!GO:0004004;ATP-dependent RNA helicase activity;0.0014729586168164!GO:0008250;oligosaccharyl transferase complex;0.00150021067670749!GO:0040008;regulation of growth;0.00152900228433921!GO:0031323;regulation of cellular metabolic process;0.00154059603828455!GO:0044262;cellular carbohydrate metabolic process;0.00160161750860495!GO:0003899;DNA-directed RNA polymerase activity;0.00168342353747437!GO:0008283;cell proliferation;0.00168779863371061!GO:0044433;cytoplasmic vesicle part;0.00179164421217306!GO:0009165;nucleotide biosynthetic process;0.00189362078000168!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00198919311520288!GO:0000786;nucleosome;0.00202466394157056!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00202466394157056!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00202466394157056!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00206942845499123!GO:0000059;protein import into nucleus, docking;0.00216715042631532!GO:0046474;glycerophospholipid biosynthetic process;0.00223746502564996!GO:0051168;nuclear export;0.00231668824639569!GO:0004576;oligosaccharyl transferase activity;0.00234046891263519!GO:0042802;identical protein binding;0.00236479533432458!GO:0045892;negative regulation of transcription, DNA-dependent;0.00242309939521921!GO:0030134;ER to Golgi transport vesicle;0.00254203965708162!GO:0006414;translational elongation;0.00254203965708162!GO:0051540;metal cluster binding;0.00258037280757795!GO:0051536;iron-sulfur cluster binding;0.00258037280757795!GO:0008632;apoptotic program;0.00258037280757795!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0027571098378956!GO:0015399;primary active transmembrane transporter activity;0.0027571098378956!GO:0051252;regulation of RNA metabolic process;0.00281342830762236!GO:0051325;interphase;0.00286964373856987!GO:0030658;transport vesicle membrane;0.00289953316223561!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00294215038371866!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00294215038371866!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00294215038371866!GO:0000314;organellar small ribosomal subunit;0.00297513549046331!GO:0005763;mitochondrial small ribosomal subunit;0.00297513549046331!GO:0008139;nuclear localization sequence binding;0.00311298326331699!GO:0030176;integral to endoplasmic reticulum membrane;0.00311896390572602!GO:0006350;transcription;0.0032320384022427!GO:0006891;intra-Golgi vesicle-mediated transport;0.00326061149689517!GO:0043488;regulation of mRNA stability;0.00333574846294332!GO:0043487;regulation of RNA stability;0.00333574846294332!GO:0018196;peptidyl-asparagine modification;0.00333574846294332!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00333574846294332!GO:0031325;positive regulation of cellular metabolic process;0.00339784816360075!GO:0006509;membrane protein ectodomain proteolysis;0.00340878425504186!GO:0033619;membrane protein proteolysis;0.00340878425504186!GO:0030132;clathrin coat of coated pit;0.00348574641277769!GO:0030521;androgen receptor signaling pathway;0.00351527650826675!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00368939874708979!GO:0030880;RNA polymerase complex;0.00373196326484472!GO:0051087;chaperone binding;0.00378300992920419!GO:0009966;regulation of signal transduction;0.00393745283260615!GO:0043433;negative regulation of transcription factor activity;0.00398857307980957!GO:0030118;clathrin coat;0.00416478243366794!GO:0030518;steroid hormone receptor signaling pathway;0.00425945775678103!GO:0017166;vinculin binding;0.00434248968550392!GO:0003682;chromatin binding;0.00445508604821595!GO:0030127;COPII vesicle coat;0.00445508604821595!GO:0012507;ER to Golgi transport vesicle membrane;0.00445508604821595!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00456712406903938!GO:0012506;vesicle membrane;0.00468514434385242!GO:0043681;protein import into mitochondrion;0.00474572098054391!GO:0005774;vacuolar membrane;0.00480838121560645!GO:0030027;lamellipodium;0.00490948584167041!GO:0048487;beta-tubulin binding;0.00490948584167041!GO:0008092;cytoskeletal protein binding;0.00492364161588056!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00492364161588056!GO:0006401;RNA catabolic process;0.00497010038127147!GO:0043065;positive regulation of apoptosis;0.00516138644362439!GO:0043068;positive regulation of programmed cell death;0.00519548106797889!GO:0045792;negative regulation of cell size;0.00519548106797889!GO:0051270;regulation of cell motility;0.00527427219426154!GO:0006950;response to stress;0.00527969167369615!GO:0006402;mRNA catabolic process;0.00532400545755526!GO:0031072;heat shock protein binding;0.00559147216321934!GO:0008047;enzyme activator activity;0.00575518599506391!GO:0000279;M phase;0.00603070665517664!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00607457609726847!GO:0007006;mitochondrial membrane organization and biogenesis;0.00610956301307838!GO:0035258;steroid hormone receptor binding;0.00611986888897265!GO:0048500;signal recognition particle;0.00646791491630942!GO:0046489;phosphoinositide biosynthetic process;0.00649008556967939!GO:0043284;biopolymer biosynthetic process;0.00666628871148077!GO:0003702;RNA polymerase II transcription factor activity;0.00688898556305113!GO:0010468;regulation of gene expression;0.00703619511047808!GO:0030308;negative regulation of cell growth;0.00706535605798528!GO:0006417;regulation of translation;0.00738981120913621!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0075212711846273!GO:0000428;DNA-directed RNA polymerase complex;0.0075212711846273!GO:0051101;regulation of DNA binding;0.00769257408060375!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0078957558587789!GO:0030660;Golgi-associated vesicle membrane;0.00798275158648312!GO:0004177;aminopeptidase activity;0.00806497870630966!GO:0016363;nuclear matrix;0.00844504443570811!GO:0007265;Ras protein signal transduction;0.00858059504752328!GO:0016197;endosome transport;0.00870970600561114!GO:0006740;NADPH regeneration;0.00915533274816677!GO:0006098;pentose-phosphate shunt;0.00915533274816677!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00923883077649281!GO:0007242;intracellular signaling cascade;0.00923924667305628!GO:0001952;regulation of cell-matrix adhesion;0.00958970941186461!GO:0031589;cell-substrate adhesion;0.00988395285345411!GO:0043492;ATPase activity, coupled to movement of substances;0.010007147969208!GO:0006352;transcription initiation;0.010007147969208!GO:0006595;polyamine metabolic process;0.0105075192851243!GO:0005813;centrosome;0.0107750949096958!GO:0022408;negative regulation of cell-cell adhesion;0.0109151366238578!GO:0005862;muscle thin filament tropomyosin;0.01103226263776!GO:0006383;transcription from RNA polymerase III promoter;0.011253793264345!GO:0033673;negative regulation of kinase activity;0.0112913902375449!GO:0006469;negative regulation of protein kinase activity;0.0112913902375449!GO:0008180;signalosome;0.0113236500880323!GO:0007050;cell cycle arrest;0.0114719710074651!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0114719710074651!GO:0006626;protein targeting to mitochondrion;0.011840269149478!GO:0044437;vacuolar part;0.0119829675803752!GO:0044452;nucleolar part;0.0125740864717778!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0126601637667715!GO:0051059;NF-kappaB binding;0.0127026401065405!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0128231850728278!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0128231850728278!GO:0007160;cell-matrix adhesion;0.0129595286084773!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0136089157304904!GO:0003729;mRNA binding;0.0137528360091706!GO:0001953;negative regulation of cell-matrix adhesion;0.0139102847872712!GO:0003711;transcription elongation regulator activity;0.0141710646410914!GO:0046467;membrane lipid biosynthetic process;0.0147796342480903!GO:0000082;G1/S transition of mitotic cell cycle;0.0152369972618738!GO:0031543;peptidyl-proline dioxygenase activity;0.0152680990091812!GO:0030119;AP-type membrane coat adaptor complex;0.0152977492381502!GO:0051098;regulation of binding;0.0157100142056179!GO:0035035;histone acetyltransferase binding;0.0157100142056179!GO:0006979;response to oxidative stress;0.0157314238867932!GO:0040011;locomotion;0.0158471612416432!GO:0005096;GTPase activator activity;0.0162989155068536!GO:0005765;lysosomal membrane;0.0163019704216886!GO:0030522;intracellular receptor-mediated signaling pathway;0.0163978068032276!GO:0006007;glucose catabolic process;0.0169507913664323!GO:0008312;7S RNA binding;0.0169507913664323!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0170243678352096!GO:0031901;early endosome membrane;0.0170888779137596!GO:0008637;apoptotic mitochondrial changes;0.0171764735376436!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0173279473718967!GO:0045047;protein targeting to ER;0.0173279473718967!GO:0008538;proteasome activator activity;0.0174620009491423!GO:0009889;regulation of biosynthetic process;0.0177533066934127!GO:0007040;lysosome organization and biogenesis;0.0177965799881276!GO:0051348;negative regulation of transferase activity;0.0178680401531425!GO:0031902;late endosome membrane;0.0179263956453429!GO:0045936;negative regulation of phosphate metabolic process;0.0180012734214746!GO:0022415;viral reproductive process;0.0180793055136171!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0181496857424855!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0184919263418996!GO:0022890;inorganic cation transmembrane transporter activity;0.0190760420516172!GO:0005815;microtubule organizing center;0.0192551628179661!GO:0005869;dynactin complex;0.0197538156082324!GO:0005832;chaperonin-containing T-complex;0.0200392325338742!GO:0031418;L-ascorbic acid binding;0.0200392325338742!GO:0043022;ribosome binding;0.0202327159815528!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0202327159815528!GO:0040012;regulation of locomotion;0.0203294993111532!GO:0045045;secretory pathway;0.0206132219007255!GO:0031529;ruffle organization and biogenesis;0.0207649124189975!GO:0007162;negative regulation of cell adhesion;0.0208599539494185!GO:0046426;negative regulation of JAK-STAT cascade;0.0210424890775818!GO:0046966;thyroid hormone receptor binding;0.0210882542382845!GO:0030131;clathrin adaptor complex;0.0210882542382845!GO:0015992;proton transport;0.0211732294734691!GO:0001666;response to hypoxia;0.0214650298794546!GO:0031326;regulation of cellular biosynthetic process;0.0218632037483997!GO:0031272;regulation of pseudopodium formation;0.0218632037483997!GO:0031269;pseudopodium formation;0.0218632037483997!GO:0031344;regulation of cell projection organization and biogenesis;0.0218632037483997!GO:0031268;pseudopodium organization and biogenesis;0.0218632037483997!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0218632037483997!GO:0031274;positive regulation of pseudopodium formation;0.0218632037483997!GO:0000049;tRNA binding;0.0218632037483997!GO:0006607;NLS-bearing substrate import into nucleus;0.0225305202545171!GO:0032906;transforming growth factor-beta2 production;0.0229831877445138!GO:0032909;regulation of transforming growth factor-beta2 production;0.0229831877445138!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0229903619193588!GO:0050790;regulation of catalytic activity;0.0230380090184786!GO:0005586;collagen type III;0.0231374095989481!GO:0006650;glycerophospholipid metabolic process;0.0233422853275235!GO:0006354;RNA elongation;0.0233422853275235!GO:0004722;protein serine/threonine phosphatase activity;0.0233422853275235!GO:0005819;spindle;0.02352411044741!GO:0016251;general RNA polymerase II transcription factor activity;0.0237147017537636!GO:0030041;actin filament polymerization;0.0239085248229607!GO:0030125;clathrin vesicle coat;0.0239085248229607!GO:0030665;clathrin coated vesicle membrane;0.0239085248229607!GO:0006818;hydrogen transport;0.0242173951296054!GO:0007033;vacuole organization and biogenesis;0.0249317488838242!GO:0000339;RNA cap binding;0.0254490180550088!GO:0006897;endocytosis;0.0254490180550088!GO:0010324;membrane invagination;0.0254490180550088!GO:0030032;lamellipodium biogenesis;0.025454962828384!GO:0030145;manganese ion binding;0.02597827043214!GO:0019798;procollagen-proline dioxygenase activity;0.0268138578934536!GO:0006892;post-Golgi vesicle-mediated transport;0.0269217484882621!GO:0008033;tRNA processing;0.0269238959133292!GO:0046979;TAP2 binding;0.0269475965620081!GO:0046977;TAP binding;0.0269475965620081!GO:0046978;TAP1 binding;0.0269475965620081!GO:0006458;'de novo' protein folding;0.0278452193626868!GO:0051084;'de novo' posttranslational protein folding;0.0278452193626868!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0278688074003284!GO:0045926;negative regulation of growth;0.0280155667526944!GO:0051539;4 iron, 4 sulfur cluster binding;0.0285277519672726!GO:0005637;nuclear inner membrane;0.0286907723978633!GO:0008022;protein C-terminus binding;0.0288416410158448!GO:0001726;ruffle;0.0294258500004612!GO:0046822;regulation of nucleocytoplasmic transport;0.0297464684726947!GO:0051128;regulation of cellular component organization and biogenesis;0.0301015246652083!GO:0048660;regulation of smooth muscle cell proliferation;0.03012879006133!GO:0031301;integral to organelle membrane;0.0301592808743401!GO:0000209;protein polyubiquitination;0.030281722340578!GO:0003756;protein disulfide isomerase activity;0.0303999606492088!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0303999606492088!GO:0004674;protein serine/threonine kinase activity;0.0306182563879126!GO:0006778;porphyrin metabolic process;0.0310324180816235!GO:0033013;tetrapyrrole metabolic process;0.0310324180816235!GO:0006839;mitochondrial transport;0.031431637755052!GO:0006611;protein export from nucleus;0.0314945446397487!GO:0042168;heme metabolic process;0.0318131965432521!GO:0006338;chromatin remodeling;0.0322552486929439!GO:0016126;sterol biosynthetic process;0.0327976619539111!GO:0051287;NAD binding;0.0329097316453369!GO:0005684;U2-dependent spliceosome;0.0329097316453369!GO:0050681;androgen receptor binding;0.0351921918279032!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0354015517529556!GO:0008287;protein serine/threonine phosphatase complex;0.0355782189642208!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.036019907879363!GO:0016584;nucleosome positioning;0.0367080278833809!GO:0016860;intramolecular oxidoreductase activity;0.0370778705323745!GO:0004680;casein kinase activity;0.0372177114232307!GO:0007021;tubulin folding;0.0372177114232307!GO:0031124;mRNA 3'-end processing;0.0372221166600759!GO:0051090;regulation of transcription factor activity;0.0373170456120161!GO:0046483;heterocycle metabolic process;0.0373316430073901!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0373543859841!GO:0032507;maintenance of cellular protein localization;0.0381512719375929!GO:0015631;tubulin binding;0.0382569927111339!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0385440205847124!GO:0042326;negative regulation of phosphorylation;0.0388073968042309!GO:0003746;translation elongation factor activity;0.0388150880144143!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0390434771431576!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0390434771431576!GO:0008154;actin polymerization and/or depolymerization;0.0390809479430928!GO:0030334;regulation of cell migration;0.0397237248132019!GO:0001516;prostaglandin biosynthetic process;0.0397697717033456!GO:0046457;prostanoid biosynthetic process;0.0397697717033456!GO:0005092;GDP-dissociation inhibitor activity;0.0398320974253959!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0398973380396437!GO:0015002;heme-copper terminal oxidase activity;0.0398973380396437!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0398973380396437!GO:0004129;cytochrome-c oxidase activity;0.0398973380396437!GO:0016272;prefoldin complex;0.0398973380396437!GO:0000118;histone deacetylase complex;0.0401070704489061!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0408603751349568!GO:0008234;cysteine-type peptidase activity;0.0409453535137611!GO:0008243;plasminogen activator activity;0.0411422106618069!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0413589319471396!GO:0016301;kinase activity;0.0417768860412159!GO:0006376;mRNA splice site selection;0.0420142628286327!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0420142628286327!GO:0006739;NADP metabolic process;0.0420305464599288!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0422364917857561!GO:0006405;RNA export from nucleus;0.0425959438322053!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0430532471626862!GO:0006289;nucleotide-excision repair;0.0431292821050612!GO:0006082;organic acid metabolic process;0.0433173609664161!GO:0008610;lipid biosynthetic process;0.0439802017271333!GO:0031371;ubiquitin conjugating enzyme complex;0.044591084894896!GO:0006984;ER-nuclear signaling pathway;0.0446723908591943!GO:0019752;carboxylic acid metabolic process;0.0449279148730139!GO:0030433;ER-associated protein catabolic process;0.0449782152746243!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0449782152746243!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0449782152746243!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0449782152746243!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0449782152746243!GO:0030384;phosphoinositide metabolic process;0.0450884112554445!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.046438002917543!GO:0030911;TPR domain binding;0.0465813717016184!GO:0005657;replication fork;0.0467058304935639!GO:0003678;DNA helicase activity;0.0467755110395188!GO:0006693;prostaglandin metabolic process;0.0468487742763505!GO:0006692;prostanoid metabolic process;0.0468487742763505!GO:0009112;nucleobase metabolic process;0.0468879369584092!GO:0005938;cell cortex;0.0470645924750419!GO:0007030;Golgi organization and biogenesis;0.0471110794300216!GO:0005874;microtubule;0.047305383638698!GO:0003690;double-stranded DNA binding;0.0473818172227118!GO:0006497;protein amino acid lipidation;0.0478059246866546!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0493394760536453!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0497037653825596!GO:0010257;NADH dehydrogenase complex assembly;0.0497037653825596!GO:0033108;mitochondrial respiratory chain complex assembly;0.0497037653825596!GO:0046519;sphingoid metabolic process;0.0497037653825596!GO:0048144;fibroblast proliferation;0.0497037653825596!GO:0048145;regulation of fibroblast proliferation;0.0497037653825596!GO:0006378;mRNA polyadenylation;0.0497037653825596!GO:0001872;zymosan binding;0.0497037653825596!GO:0001878;response to yeast;0.0497037653825596
|sample_id=11283
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=aorta
|top_motifs=GTF2A1,2:1.80379434481;IRF7:1.45353465166;TLX1..3_NFIC{dimer}:1.35772572773;HES1:1.33762412602;ZNF238:1.27958645555;HMX1:1.21578277369;EN1,2:1.21234755168;IRF1,2:1.2028746359;LHX3,4:1.15179491893;ALX4:1.13682731277;HIF1A:1.13645624469;MYBL2:1.11231770191;ZNF148:1.0368835401;CRX:1.03418958842;NKX3-1:1.0313642928;PPARG:1.02223606783;XCPE1{core}:0.969908110263;RXR{A,B,G}:0.957532869508;EBF1:0.93344080854;ONECUT1,2:0.930344869309;GLI1..3:0.900564027691;MED-1{core}:0.887990257191;GTF2I:0.878676858407;HSF1,2:0.851154439993;HOX{A5,B5}:0.844807261016;TFCP2:0.844092079969;IKZF1:0.838274578718;CDC5L:0.820774615417;POU5F1:0.81696718109;MZF1:0.760734970366;NR6A1:0.75637816002;TEAD1:0.738985832803;GCM1,2:0.72585481741;HAND1,2:0.701079329217;GFI1B:0.687511965235;POU2F1..3:0.684071065215;MAFB:0.674715190379;ZBTB6:0.674377975818;AHR_ARNT_ARNT2:0.653644080378;SPZ1:0.649175475517;EVI1:0.639013013835;ZIC1..3:0.638726735924;TP53:0.616288256069;MAZ:0.588298132363;PAX8:0.580021121487;TBP:0.573725060902;SRF:0.564196297796;NR3C1:0.564005807937;STAT2,4,6:0.553979219924;CEBPA,B_DDIT3:0.551628713533;PRDM1:0.539474989999;NKX2-2,8:0.536836792175;NR1H4:0.517157160246;NFATC1..3:0.510154567759;NANOG{mouse}:0.508614103898;TFAP2{A,C}:0.46173028963;TFDP1:0.455672591857;PAX1,9:0.442337863348;POU3F1..4:0.414407902672;RREB1:0.402385509893;TFAP2B:0.40120812224;FOS_FOS{B,L1}_JUN{B,D}:0.398574689077;EP300:0.391625996568;PBX1:0.385711586355;MTE{core}:0.384262016487;GATA4:0.37788208696;NFE2L2:0.374063233749;GZF1:0.369531395171;SOX{8,9,10}:0.366885386311;ATF6:0.36215969614;SOX17:0.358926324034;PATZ1:0.353011676441;YY1:0.335858390866;PAX3,7:0.324005934865;MTF1:0.320009742089;BACH2:0.316881215519;NHLH1,2:0.314048263194;ZNF423:0.29506407678;UFEwm:0.293229532166;HBP1_HMGB_SSRP1_UBTF:0.283161947381;FOX{I1,J2}:0.272502348246;TFAP4:0.271104782965;HIC1:0.266146879787;NFE2L1:0.260281337718;ADNP_IRX_SIX_ZHX:0.256377296587;AR:0.254342704926;ESRRA:0.251368090187;ALX1:0.246507225934;TAL1_TCF{3,4,12}:0.244209719352;CDX1,2,4:0.208036442343;SMAD1..7,9:0.205767661893;NFIX:0.204361710241;FOXL1:0.183461433021;NFKB1_REL_RELA:0.182102814223;REST:0.165652316664;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.158919659239;EGR1..3:0.156305347868;MYFfamily:0.151939134356;NFE2:0.147210815001;HLF:0.1389222135;bHLH_family:0.136072403298;FOSL2:0.132426579288;NKX3-2:0.130906409873;KLF4:0.123830594395;XBP1:0.110373167522;STAT5{A,B}:0.10135536988;RXRA_VDR{dimer}:0.0995047265181;PRRX1,2:0.0988326196005;TOPORS:0.0815843268944;HNF1A:0.0712324310239;ZNF384:0.0566224931582;HOXA9_MEIS1:0.0525386101067;AIRE:0.0484173142036;JUN:0.0446065687473;PAX2:0.036560007059;SOX2:0.028954288656;POU1F1:-0.0242633311748;LMO2:-0.0302184416431;MEF2{A,B,C,D}:-0.0352776899486;ETS1,2:-0.0469308464366;VSX1,2:-0.0668845344287;SP1:-0.0953766486682;DMAP1_NCOR{1,2}_SMARC:-0.0976269039372;RUNX1..3:-0.102277935062;LEF1_TCF7_TCF7L1,2:-0.124414813015;ELF1,2,4:-0.13076741157;POU6F1:-0.134371409999;GFI1:-0.142585310893;HNF4A_NR2F1,2:-0.161095151373;NFIL3:-0.164472762289;TLX2:-0.16701921968;ZFP161:-0.171341753199;HMGA1,2:-0.172563507164;HOX{A6,A7,B6,B7}:-0.177426813002;MYB:-0.179313940234;TGIF1:-0.187594335485;ATF2:-0.1886608391;PAX5:-0.193699089768;DBP:-0.200197592169;ESR1:-0.200624166729;NR5A1,2:-0.227861521282;FOX{F1,F2,J1}:-0.229938085893;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.242518554851;SPIB:-0.242681644371;SPI1:-0.285238452614;GATA6:-0.288569587692;ELK1,4_GABP{A,B1}:-0.326309471505;NANOG:-0.328253112439;RFX1:-0.329238837932;E2F1..5:-0.347844824855;RORA:-0.349870718299;NKX2-1,4:-0.362895119473;BPTF:-0.381547956684;ATF5_CREB3:-0.418797550545;ZNF143:-0.447348559113;FOXO1,3,4:-0.456426602385;SREBF1,2:-0.460869132194;NFY{A,B,C}:-0.46925218184;FOXD3:-0.472996575862;PITX1..3:-0.489900028517;NRF1:-0.490857931739;PDX1:-0.513505412259;NKX2-3_NKX2-5:-0.522913160498;FOX{D1,D2}:-0.527427503535;BREu{core}:-0.53019172967;FOXP3:-0.532366286391;TBX4,5:-0.533208485002;ARID5B:-0.554640733547;NKX6-1,2:-0.558871672785;FOXM1:-0.582392239009;CUX2:-0.590233820252;HOX{A4,D4}:-0.60578227968;SNAI1..3:-0.63217208313;SOX5:-0.638122570294;FOXQ1:-0.645962592281;FOXN1:-0.699922339939;RBPJ:-0.749690199684;OCT4_SOX2{dimer}:-0.754413174509;ATF4:-0.76119456755;IKZF2:-0.771741377426;PAX6:-0.813769204983;FOXP1:-0.876037729186;FOXA2:-0.884407382416;T:-0.899735953289;MYOD1:-0.922708590317;ZEB1:-0.956625562871;RFX2..5_RFXANK_RFXAP:-0.95798447387;STAT1,3:-0.996503577889;TEF:-1.03793361426;CREB1:-1.04503569749;PAX4:-1.11716443076;ZBTB16:-1.19226789899
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11283-116I5;search_select_hide=table117:FF:11283-116I5
}}
}}

Latest revision as of 16:30, 3 June 2020

Name:Smooth Muscle Cells - Aortic, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11085
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueaorta
dev stage39 years old adult
sexmale
age39
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1401(1)
catalog numberCA354-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005435
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11085 CAGE DRX008468 DRR009340
Accession ID Hg19

Library idBAMCTSS
CNhs11085 DRZ000765 DRZ002150
Accession ID Hg38

Library idBAMCTSS
CNhs11085 DRZ012115 DRZ013500
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005435
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10008.GTAGAG sRNA-Seq DRX037122 DRR041488
Accession ID Hg19

Library idBAMCTSS
SRhi10008.GTAGAG DRZ007130


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0528
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.145
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.114
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0976
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.168
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.368
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.113
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.284
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.343
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340.845
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.422
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.195
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0958
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0411
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.405
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.284
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.284
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.836
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.405
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.284
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11085

Jaspar motifP-value
MA0002.20.929
MA0003.10.455
MA0004.10.721
MA0006.10.157
MA0007.10.475
MA0009.10.78
MA0014.10.182
MA0017.10.894
MA0018.20.00199
MA0019.10.338
MA0024.11.22947e-5
MA0025.10.196
MA0027.10.999
MA0028.10.00291
MA0029.10.434
MA0030.10.547
MA0031.10.315
MA0035.20.976
MA0038.10.764
MA0039.20.114
MA0040.10.956
MA0041.10.21
MA0042.10.384
MA0043.10.00335
MA0046.10.986
MA0047.20.74
MA0048.10.519
MA0050.15.41115e-21
MA0051.11.122e-15
MA0052.10.869
MA0055.10.965
MA0057.10.727
MA0058.10.606
MA0059.10.539
MA0060.10.073
MA0061.10.146
MA0062.29.46867e-6
MA0065.20.737
MA0066.10.753
MA0067.10.00469
MA0068.10.213
MA0069.10.645
MA0070.10.848
MA0071.10.4
MA0072.10.759
MA0073.10.778
MA0074.10.192
MA0076.10.00174
MA0077.10.273
MA0078.10.142
MA0079.20.879
MA0080.20.00563
MA0081.10.0502
MA0083.10.0242
MA0084.10.28
MA0087.10.365
MA0088.10.574
MA0090.10.00339
MA0091.10.328
MA0092.10.188
MA0093.10.751
MA0099.29.89241e-11
MA0100.10.0782
MA0101.10.124
MA0102.20.618
MA0103.10.0298
MA0104.20.366
MA0105.10.298
MA0106.10.205
MA0107.10.0147
MA0108.27.98466e-8
MA0111.10.0135
MA0112.20.0794
MA0113.10.384
MA0114.10.835
MA0115.10.97
MA0116.10.578
MA0117.10.307
MA0119.10.0391
MA0122.10.801
MA0124.10.319
MA0125.10.883
MA0131.10.325
MA0135.10.936
MA0136.10.0209
MA0137.20.955
MA0138.20.295
MA0139.10.507
MA0140.10.684
MA0141.10.726
MA0142.10.767
MA0143.10.452
MA0144.10.415
MA0145.10.146
MA0146.10.779
MA0147.10.611
MA0148.10.427
MA0149.10.332
MA0150.10.149
MA0152.10.229
MA0153.10.865
MA0154.10.21
MA0155.10.0284
MA0156.10.211
MA0157.10.877
MA0159.10.871
MA0160.10.712
MA0162.10.147
MA0163.10.284
MA0164.10.413
MA0258.10.177
MA0259.10.253



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11085

Novel motifP-value
10.4
100.0997
1000.487
1010.594
1020.691
1030.673
1040.146
1050.929
1060.0343
1070.00597
1080.206
1090.605
110.533
1100.339
1110.223
1120.69
1130.166
1140.493
1150.602
1160.113
1170.873
1180.721
1190.754
120.81
1200.309
1210.245
1220.932
1230.00896
1240.669
1250.902
1260.421
1270.619
1280.175
1290.497
130.736
1300.191
1310.576
1320.483
1330.818
1340.967
1350.32
1360.135
1370.819
1380.908
1390.684
140.924
1400.764
1410.0422
1420.639
1430.198
1440.418
1450.507
1460.0673
1470.0182
1480.572
1490.256
150.878
1500.101
1510.362
1520.0378
1530.195
1540.702
1550.016
1560.592
1570.121
1580.0324
1590.407
160.141
1600.239
1610.786
1620.235
1630.762
1640.934
1650.331
1660.0363
1670.225
1680.963
1690.0951
170.295
180.0672
190.128
20.336
200.405
210.336
220.4
230.329
240.221
250.0539
260.364
270.824
280.136
290.989
30.614
300.415
310.526
328.92011e-6
330.972
340.271
350.649
360.327
370.39
380.961
390.14
40.667
400.145
410.86
420.961
430.243
440.686
450.169
460.456
470.831
480.808
490.919
50.942
500.51
510.671
520.692
530.268
540.565
550.24
560.434
570.858
580.334
590.194
60.25
600.568
610.424
620.536
630.401
640.855
650.252
660.849
670.857
680.24
690.405
70.263
700.463
710.885
720.229
730.0633
740.972
750.594
760.593
770.023
780.425
790.199
80.433
800.512
810.891
820.441
830.434
840.648
850.0748
860.655
870.0697
880.107
890.126
90.161
900.613
910.694
920.659
930.815
940.715
950.527
960.896
970.135
980.36
990.018



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11085


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000168 (human aortic smooth muscle cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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