FF:10709-109H7: Difference between revisions

Revision as of 19:41, 9 July 2012

Name:	bronchioalveolar carcinoma cell line:NCI-H358
Species:	Human (Homo sapiens)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	NA
sex	male
age	NA
cell type	clara cell
cell line	NCI-H358
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.321
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.38
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0428
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.217
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0413
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0386
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.305
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0631
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.246
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0984
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0819
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.384
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.00475
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.246
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11840

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0794
MA0003.1	MA0003.1	0.55
MA0004.1	MA0004.1	0.936
MA0006.1	MA0006.1	0.745
MA0007.1	MA0007.1	0.867
MA0009.1	MA0009.1	0.713
MA0014.1	MA0014.1	0.0378
MA0017.1	MA0017.1	0.55
MA0018.2	MA0018.2	0.88
MA0019.1	MA0019.1	0.76
MA0024.1	MA0024.1	7.0464e-6
MA0025.1	MA0025.1	0.825
MA0027.1	MA0027.1	0.578
MA0028.1	MA0028.1	7.24845e-4
MA0029.1	MA0029.1	0.23
MA0030.1	MA0030.1	0.265
MA0031.1	MA0031.1	0.00397
MA0035.2	MA0035.2	0.808
MA0038.1	MA0038.1	0.00157
MA0039.2	MA0039.2	1.92037e-4
MA0040.1	MA0040.1	0.267
MA0041.1	MA0041.1	0.62
MA0042.1	MA0042.1	0.385
MA0043.1	MA0043.1	0.308
MA0046.1	MA0046.1	0.892
MA0047.2	MA0047.2	0.0179
MA0048.1	MA0048.1	0.809
MA0050.1	MA0050.1	0.523
MA0051.1	MA0051.1	0.269
MA0052.1	MA0052.1	0.68
MA0055.1	MA0055.1	0.00513
MA0057.1	MA0057.1	0.67
MA0058.1	MA0058.1	0.599
MA0059.1	MA0059.1	0.987
MA0060.1	MA0060.1	1.49316e-25
MA0061.1	MA0061.1	0.00142
MA0062.2	MA0062.2	0.0055
MA0065.2	MA0065.2	0.0651
MA0066.1	MA0066.1	0.331
MA0067.1	MA0067.1	0.208
MA0068.1	MA0068.1	0.00108
MA0069.1	MA0069.1	0.48
MA0070.1	MA0070.1	0.952
MA0071.1	MA0071.1	0.418
MA0072.1	MA0072.1	0.241
MA0073.1	MA0073.1	0.831
MA0074.1	MA0074.1	0.789
MA0076.1	MA0076.1	0.00149
MA0077.1	MA0077.1	0.354
MA0078.1	MA0078.1	0.623
MA0079.2	MA0079.2	0.442
MA0080.2	MA0080.2	7.86247e-5
MA0081.1	MA0081.1	0.0151
MA0083.1	MA0083.1	0.238
MA0084.1	MA0084.1	0.719
MA0087.1	MA0087.1	0.669
MA0088.1	MA0088.1	0.882
MA0090.1	MA0090.1	0.989
MA0091.1	MA0091.1	8.29043e-4
MA0092.1	MA0092.1	0.0806
MA0093.1	MA0093.1	0.847
MA0099.2	MA0099.2	0.00216
MA0100.1	MA0100.1	0.431
MA0101.1	MA0101.1	0.0109
MA0102.2	MA0102.2	0.739
MA0103.1	MA0103.1	3.15677e-8
MA0104.2	MA0104.2	0.0824
MA0105.1	MA0105.1	5.56446e-4
MA0106.1	MA0106.1	0.27
MA0107.1	MA0107.1	0.00109
MA0108.2	MA0108.2	0.78
MA0111.1	MA0111.1	0.842
MA0112.2	MA0112.2	0.639
MA0113.1	MA0113.1	0.0238
MA0114.1	MA0114.1	0.22
MA0115.1	MA0115.1	0.335
MA0116.1	MA0116.1	0.4
MA0117.1	MA0117.1	0.0891
MA0119.1	MA0119.1	0.112
MA0122.1	MA0122.1	0.943
MA0124.1	MA0124.1	0.471
MA0125.1	MA0125.1	0.304
MA0131.1	MA0131.1	0.819
MA0135.1	MA0135.1	0.085
MA0136.1	MA0136.1	0.0509
MA0137.2	MA0137.2	0.434
MA0138.2	MA0138.2	0.273
MA0139.1	MA0139.1	0.015
MA0140.1	MA0140.1	0.195
MA0141.1	MA0141.1	0.2
MA0142.1	MA0142.1	0.941
MA0143.1	MA0143.1	0.99
MA0144.1	MA0144.1	0.968
MA0145.1	MA0145.1	0.42
MA0146.1	MA0146.1	0.0308
MA0147.1	MA0147.1	0.0526
MA0148.1	MA0148.1	0.00528
MA0149.1	MA0149.1	0.186
MA0150.1	MA0150.1	0.92
MA0152.1	MA0152.1	0.607
MA0153.1	MA0153.1	0.764
MA0154.1	MA0154.1	0.0016
MA0155.1	MA0155.1	0.163
MA0156.1	MA0156.1	0.455
MA0157.1	MA0157.1	0.00574
MA0159.1	MA0159.1	0.0592
MA0160.1	MA0160.1	0.329
MA0162.1	MA0162.1	0.823
MA0163.1	MA0163.1	0.0918
MA0164.1	MA0164.1	0.712
MA0258.1	MA0258.1	0.697
MA0259.1	MA0259.1	0.149

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11840

Novel motif	Logo	P-value
1	1	0.699
10	10	0.446
100	100	0.201
101	101	0.841
102	102	0.229
103	103	0.999
104	104	0.799
105	105	0.67
106	106	0.118
107	107	0.454
108	108	0.368
109	109	0.264
11	11	0.56
110	110	0.91
111	111	0.497
112	112	0.011
113	113	0.511
114	114	0.501
115	115	0.752
116	116	0.248
117	117	0.186
118	118	0.557
119	119	0.826
12	12	0.479
120	120	0.435
121	121	0.926
122	122	0.383
123	123	0.246
124	124	0.215
125	125	0.753
126	126	0.226
127	127	0.765
128	128	0.0945
129	129	0.88
13	13	0.0427
130	130	0.422
131	131	0.248
132	132	0.629
133	133	0.0106
134	134	0.171
135	135	0.0185
136	136	0.0723
137	137	0.0469
138	138	0.216
139	139	0.382
14	14	0.297
140	140	0.18
141	141	0.985
142	142	0.789
143	143	0.831
144	144	0.285
145	145	0.377
146	146	0.641
147	147	0.64
148	148	0.232
149	149	0.447
15	15	0.795
150	150	0.854
151	151	0.89
152	152	0.545
153	153	0.104
154	154	0.708
155	155	0.261
156	156	0.522
157	157	0.769
158	158	0.543
159	159	0.576
16	16	0.633
160	160	0.593
161	161	0.445
162	162	0.373
163	163	0.889
164	164	0.00447
165	165	0.997
166	166	0.274
167	167	0.328
168	168	0.127
169	169	0.497
17	17	0.853
18	18	0.0183
19	19	0.108
2	2	0.752
20	20	0.292
21	21	0.781
22	22	0.742
23	23	0.00258
24	24	0.742
25	25	0.741
26	26	0.274
27	27	0.432
28	28	0.549
29	29	0.702
3	3	0.683
30	30	0.671
31	31	0.137
32	32	0.00159
33	33	0.104
34	34	0.029
35	35	0.0401
36	36	0.699
37	37	0.788
38	38	0.843
39	39	0.663
4	4	0.0412
40	40	0.0664
41	41	0.327
42	42	0.764
43	43	0.184
44	44	0.516
45	45	0.524
46	46	0.899
47	47	0.882
48	48	0.978
49	49	0.975
5	5	0.463
50	50	0.746
51	51	0.704
52	52	0.554
53	53	0.877
54	54	0.801
55	55	0.825
56	56	0.967
57	57	0.829
58	58	0.469
59	59	0.317
6	6	0.556
60	60	0.515
61	61	0.244
62	62	0.118
63	63	0.957
64	64	0.848
65	65	0.566
66	66	2.55021e-8
67	67	0.945
68	68	0.012
69	69	0.288
7	7	0.709
70	70	0.877
71	71	0.436
72	72	0.411
73	73	0.599
74	74	0.0389
75	75	0.353
76	76	0.712
77	77	0.147
78	78	0.181
79	79	0.0902
8	8	0.856
80	80	0.0683
81	81	0.0321
82	82	0.182
83	83	0.877
84	84	0.811
85	85	0.0128
86	86	0.677
87	87	0.0542
88	88	0.896
89	89	0.999
9	9	0.0328
90	90	0.531
91	91	0.156
92	92	0.316
93	93	0.467
94	94	0.283
95	95	0.263
96	96	0.356
97	97	0.698
98	98	0.408
99	99	0.93

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11840

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102060 bronchioalveolar carcinoma cell sample
FF:0102835 NCI-H358 cell sample
FF:0104802 bronchioloalveolar carcinoma cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0000322 (pneumocyte)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1325 (bronchus cancer)
3905 (lung carcinoma)
3908 (non-small cell lung carcinoma)
3910 (lung adenocarcinoma)
3904 (bronchogenic carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0004821 (pulmonary alveolus epithelium)
0004903 (bronchoalveolar duct junction)
0000479 (tissue)
0000058 (duct)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0003914 (epithelial tube)
0007499 (epithelial sac)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000487 (simple squamous epithelium)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0003215 (alveolus)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0009856 (sac)
0010368 (pulmonary lobule)
0009911 (lobule)
0002299 (alveolus of lung)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
0006524 (alveolar system)
0008874 (pulmonary acinus)
0002169 (alveolar sac)
0004894 (alveolar wall)
0002173 (alveolar duct)
0002186 (bronchiole)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0102061 (bronchogenic carcinoma cell sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102058 (non-small cell lung cancer cell sample)
0102057 (lung adenocarcinoma cell sample)
0102553 (non-small cell lung cancer cell line sample)
0102060 (bronchioalveolar carcinoma cell sample)
0104802 (bronchioloalveolar carcinoma cell sample)
0102835 (NCI-H358 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 10: / Line 10: @@
 |def=
 |expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!2.31!201.37!ELF3;;chr1:201979703..201979721,+!p2@ELF3!2.07!115.69!ELF3;;chr4:57547454..57547469,-!p1@HOPX!1.87!72.72!HOPX;;chr1:166958538..166958552,+!p2@MAEL!1.81!63.31!MAEL;;chr14:37131058..37131139,+!p1@PAX9!1.72!51.87!PAX9;;chr3:189349162..189349207,+!p2@TP63!1.65!43.73!TP63;;chr14:36989427..36989442,-!p1@NKX2-1!1.61!39.41!NKX2-1;;chr17:17726907..17726958,-!p2@SREBF1!1.59!223.49!SREBF1;;chr8:102504651..102504683,+!p1@GRHL2!1.51!31.02!GRHL2;;chr3:193853927..193853944,+!p1@HES1!1.45!850.48!HES1;;chr17:80797886..80797906,-!p1@ZNF750!1.43!26.19!ZNF750;;chr14:36989358..36989378,-!p3@NKX2-1!1.39!23.39!NKX2-1;;chr14:36989940..36989957,-!p2@NKX2-1!1.39!23.39!NKX2-1;;chr11:34642612..34642646,+!p1@EHF!1.37!22.37!EHF;;chr17:70117153..70117174,+!p1@SOX9!1.36!216.88!SOX9;;chr1:166958504..166958525,+!p1@MAEL!1.36!21.87!MAEL;;chr7:63505799..63505904,+!p1@ZNF727!1.35!21.61!ZNF727;;chr20:55204351..55204377,+!p1@TFAP2C!1.28!22.88!TFAP2C;;chr5:134369905..134369972,-!p1@PITX1!1.24!24.92!PITX1;;chr1:209979467..209979494,-!p1@IRF6!1.23!18.05!IRF6;;chr15:67418119..67418162,+!p5@SMAD3!1.23!17.80!SMAD3;;chr14:38064429..38064486,-!p1@FOXA1!1.23!16.02!FOXA1;;chr3:111314186..111314204,-!p1@ZBED2!1.23!16.02!ZBED2;;chr19:45971246..45971265,+!p1@FOSB!1.21!275.87!FOSB;;chr5:137804405..137804444,+!p3@EGR1!1.18!16.78!EGR1;;chr6:126240442..126240459,+!p4@NCOA7!1.13!16.02!NCOA7;;chr2:238592039..238592054,+!p4@LRRFIP1!1.12!12.20!LRRFIP1;;chr14:105935396..105935413,+!p4@MTA1!1.11!11.95!MTA1;;chr5:137804484..137804498,+!p2@EGR1!1.07!43.73!EGR1;;chr3:12330560..12330579,+!p1@PPARG!1.07!12.46!PPARG;;chr14:36989913..36989931,-!p6@NKX2-1!1.07!10.68!NKX2-1;;chr20:6748325..6748352,+!p1@BMP2!1.06!15.26!BMP2;;chr12:52445218..52445237,+!p1@NR4A1!1.05!131.19!NR4A1;;chr14:105935426..105935440,+!p9@MTA1!1.05!10.17!MTA1;;chr1:151804244..151804310,-!p1@RORC!1.04!9.92!RORC;;chr8:102504979..102505010,+!p2@GRHL2!1.04!9.92!GRHL2;;chr10:126138597..126138612,-!p1@NKX1-2!1.02!9.41!NKX1-2;;chr6:126240380..126240430,+!p2@NCOA7!1.01!24.41!NCOA7;;chr6:28048343..28048354,+!p1@ZNF165!1.01!9.15!ZNF165;;chr14:36989379..36989390,-!p8@NKX2-1!1.01!9.15!NKX2-1;;chr5:92918860..92918871,+!p10@NR2F1!1.00!9.92!NR2F1;;chr15:67418047..67418093,+!p4@SMAD3!0.98!10.93!SMAD3;;chr14:36989892..36989908,-!p9@NKX2-1!0.98!8.64!NKX2-1;;chr13:73633131..73633149,+!p1@KLF5!0.96!88.48!KLF5;;chr16:54320158..54320200,-!p5@IRX3!0.96!11.70!IRX3;;chrY:21906594..21906622,-!p1@KDM5D!0.96!8.14!KDM5D;;chr6:21597600..21597664,+!p3@SOX4!0.95!13.48!SOX4;;chr14:36989336..36989354,-!p5@NKX2-1!0.95!7.88!NKX2-1;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.94!7.63!ZNF676;;chr3:181429704..181429722,+!p1@SOX2!0.94!7.63!SOX2;;chr5:137801160..137801176,+!p1@EGR1!0.93!768.35!EGR1;;chr17:17726892..17726903,-!p6@SREBF1!0.92!8.39!SREBF1;;chr15:67418177..67418204,+!p9@SMAD3!0.92!7.37!SMAD3;;chr11:129245526..129245553,+!p1@BARX2!0.92!7.37!BARX2;;chr5:134369879..134369898,-!p2@PITX1!0.91!7.12!PITX1;;chr8:102504690..102504704,+!p3@GRHL2!0.90!6.86!GRHL2;;chr9:124976154..124976177,-!p5@LHX6!0.90!6.86!LHX6;;chr5:92918894..92918912,+!p2@NR2F1!0.89!23.39!NR2F1;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.88!67.12!ZNF595;;chr6:10412600..10412637,-!p1@TFAP2A!0.88!11.19!TFAP2A;;chr6:10413188..10413249,-!p7@TFAP2A!0.88!6.61!TFAP2A;;chr2:214015343..214015366,-!p3@IKZF2!0.88!6.61!IKZF2;;chr9:100615499..100615519,+!p1@FOXE1!0.87!6.36!FOXE1;;chr1:24645832..24645853,+!p1@GRHL3!0.87!6.36!GRHL3;;chr5:137804357..137804390,+!p4@EGR1!0.86!7.37!EGR1;;chr1:935467..935484,-!p1@HES4!0.85!28.73!HES4;;chr16:54320675..54320715,-!p1@IRX3!0.85!13.73!IRX3;;chr1:24645921..24645973,+!p2@GRHL3!0.85!6.10!GRHL3;;chr6:21597765..21597779,+!p2@SOX4!0.84!51.36!SOX4;;chr12:24715376..24715432,-!p1@SOX5!0.83!7.37!SOX5;;chr11:65667846..65667868,-!p1@FOSL1!0.82!157.89!FOSL1;;chr19:21324863..21324874,+!p2@ZNF431!0.82!10.17!ZNF431;;chr10:135122868..135122893,+!p3@ZNF511!0.82!5.59!ZNF511;;chr5:178368186..178368238,+!p1@ZNF454!0.81!10.17!ZNF454;;chr12:54785074..54785122,-!p2@ZNF385A!0.81!8.64!ZNF385A;;chr6:126240463..126240489,+!p6@NCOA7!0.80!6.10!NCOA7;;chr20:22565370..22565388,-!p2@FOXA2!0.80!5.34!FOXA2;;chr14:36989412..36989423,-!p12@NKX2-1!0.80!5.34!NKX2-1;;chr17:80797863..80797874,-!p2@ZNF750!0.80!5.34!ZNF750;;chr11:65667884..65667895,-!p2@FOSL1!0.79!21.61!FOSL1;;chr3:169381420..169381535,-!p1@MECOM!0.79!6.10!MECOM;;chr6:21597514..21597578,+!p4@SOX4!0.78!8.90!SOX4;;chr4:1873216..1873238,+!p5@WHSC1!0.78!6.86!WHSC1;;chr13:79177703..79177729,-!p2@POU4F1!0.78!5.09!POU4F1;;chr14:105935576..105935594,+!p11@MTA1!0.78!5.09!MTA1;;chr17:48072574..48072597,-!p1@DLX3!0.78!5.09!DLX3;;chr19:2867325..2867348,+!p1@ZNF556!0.78!5.09!ZNF556;;chr19:9609272..9609297,-!p1@ZNF560!0.78!5.09!ZNF560;;chrY:2803415..2803468,+!p1@ZFY!0.77!4.83!ZFY;;chr1:935398..935465,-!p2@HES4!0.76!10.42!HES4;;chr14:75745523..75745537,+!p1@FOS!0.75!617.58!FOS;;chrX:131623044..131623089,-!p1@MBNL3!0.75!20.85!MBNL3;;chr6:10412392..10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2A!0.25!0.76!TFAP2A;;chr6:106546786..106546802,+!p6@PRDM1!0.25!0.76!PRDM1;;chr6:34524025..34524045,-!p3@SPDEF!0.25!0.76!SPDEF;;chr6:45389985..45389996,+!p18@RUNX2!0.25!0.76!RUNX2;;chr7:101917509..101917520,+!p9@CUX1!0.25!0.76!CUX1;;chr8:123793536..123793548,+!p13@ZHX2!0.25!0.76!ZHX2;;chr8:28243743..28243752,-!p10@ZNF395!0.25!0.76!ZNF395;;chr8:76319850..76319870,+!p4@HNF4G!0.25!0.76!HNF4G;;chr8:80680061..80680075,-!p4@HEY1!0.25!0.76!HEY1;;chr8:86089498..86089519,+!p6@E2F5!0.25!0.76!E2F5;;chr9:124976299..124976327,-!p3@LHX6!0.25!0.76!LHX6;;chr19:12902289..12902307,+!p1@JUNB!0.24!361.55!JUNB;;chr20:49547910..49547988,-!p1@ADNP!0.24!57.46!ADNP;;chr9:133454943..133455020,+!p1@FUBP3!0.24!53.65!FUBP3;;chr1:247495140..247495177,-!p1@ZNF496!0.24!16.53!ZNF496;;chr6:31126291..31126399,+!p1@TCF19!0.24!14.24!TCF19;;chr6:168227552..168227609,+!p1@MLLT4!0.24!12.20!MLLT4;;chr19:37019136..37019178,-!p1@ZNF260!0.24!12.20!ZNF260;;chr19:56110859..56110917,-!p1@FIZ1!0.24!9.41!FIZ1;;chr12:124873852..124873881,-!p3@NCOR2!0.24!8.90!NCOR2;;chr9:3525968..3526016,-!p1@RFX3!0.24!8.39!RFX3;;chr17:56065729..56065781,-!p2@VEZF1!0.24!6.10!VEZF1;;chr3:71007344..71007348,-!p6@FOXP1!0.24!5.59!FOXP1;;chr1:117602932..117602973,+!p1@TTF2!0.24!5.09!TTF2;;chrX:101186981..101187030,-!p1@ZMAT1!0.24!4.32!ZMAT1;;chr1:78444714..78444725,-!p3@FUBP1!0.24!3.56!FUBP1;;chr20:44600496..44600541,-!p2@ZNF335!0.24!3.31!ZNF335;;chr19:44331555..44331581,+!p2@ZNF283!0.24!2.54!ZNF283;;chr12:72058102..72058127,+!p7@THAP2!0.24!2.03!THAP2;;chr9:14314106..14314119,-!p5@NFIB!0.24!2.03!NFIB;;chr19:36980756..36980795,-!p3@ZNF566!0.24!1.78!ZNF566;;chr5:172484377..172484418,+!p2@C5orf41!0.24!1.78!CREBRF;;chr9:110252074..110252079,-!p3@KLF4!0.24!1.78!KLF4;;chr2:231084639..231084654,-!p2@SP110!0.24!1.78!SP110;;chr17:41622925..41622976,-!p3@ETV4!0.24!1.53!ETV4;;chr2:192015750..192015793,-!p2@STAT4!0.24!1.27!STAT4;;chr4:106156933..106156947,+!p3@TET2!0.24!1.27!TET2;;chr4:146402795..146402816,+!p7@SMAD1!0.24!1.27!SMAD1;;chr20:51588873..51588953,+!p1@TSHZ2!0.24!1.27!TSHZ2;;chr5:178287112..178287133,+!p4@ZNF354B!0.24!1.27!ZNF354B;;chr5:88179518..88179569,-!p5@MEF2C!0.24!1.27!MEF2C;;chr6:21597283..21597312,+!p7@SOX4!0.24!1.27!SOX4;;chr8:116681022..116681042,-!p10@TRPS1!0.24!1.27!TRPS1;;chrX:70586140..70586218,+!p1@TAF1!0.23!28.22!TAF1;;chr4:38665810..38665827,+!p1@KLF3!0.23!21.61!KLF3;;chr12:77459306..77459365,-!p1@E2F7!0.23!18.56!E2F7;;chr2:208394627..208394655,+!p2@CREB1!0.23!12.20!CREB1;;chr14:100705200..100705237,+!p3@YY1!0.23!11.19!YY1;;chr19:58740266..58740297,+!p1@ZNF544!0.23!10.42!ZNF544;;chr19:52408257..52408278,-!p1@ZNF649!0.23!9.41!ZNF649;;chr6:43139041..43139094,+!p3@SRF!0.23!7.88!SRF;;chr6:20403826..20403886,+!p2@E2F3!0.23!6.86!E2F3;;chr1:151431647..151431669,-!p2@POGZ!0.23!6.86!POGZ;;chr16:3285144..3285191,-!p1@ZNF200!0.23!6.86!ZNF200;;chr1:205601000..205601055,-!p2@ELK4!0.23!5.59!ELK4;;chr1:40915725..40915808,+!p1@ZNF643!0.23!3.81!ZNF643;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.23!3.56!ZNF525;;chr8:22550982..22550999,-!p1@EGR3!0.23!3.56!EGR3;;chr12:51566562..51566584,-!p2@TFCP2!0.23!3.56!TFCP2;;chr1:67395982..67396015,+!p4@MIER1!0.23!3.31!MIER1;;chr9:14083467..14083483,-!p4@NFIB!0.23!3.05!NFIB;;chr4:56413032..56413056,-!p2@CLOCK!0.23!3.05!CLOCK;;chr15:74833584..74833626,+!p1@ARID3B!0.23!2.80!ARID3B;;chr14:24837368..24837401,+!p1@NFATC4!0.23!2.80!NFATC4;;chr14:64971438..64971450,+!p2@ZBTB1!0.23!2.80!ZBTB1;;chr7:1570388..1570418,+!p2@MAFK!0.23!2.54!MAFK;;chr8:125985531..125985571,+!p1@ZNF572!0.23!2.29!ZNF572;;chr19:12203100..12203132,+!p1@ZNF788!0.23!2.29!ZNF788;;chr13:72441315..72441454,-!p1@DACH1!0.23!2.29!DACH1;;chr1:23857698..23857733,-!p1@E2F2!0.23!2.03!E2F2;;chr1:33004734..33004807,+!p2@ZBTB8A!0.23!2.03!ZBTB8A;;chr15:90544688..90544728,+!p2@ZNF710!0.23!2.03!ZNF710;;chr17:79885633..79885645,-!p4@MAFG!0.23!1.78!MAFG;;chr11:67007445..67007459,+!p4@KDM2A!0.23!1.78!KDM2A;;chr8:71316428..71316459,-!p2@NCOA2!0.23!1.78!NCOA2;;chr4:331619..331630,+!p2@ZNF141!0.23!1.53!ZNF141;;chr4:57774884..57774924,+!p4@REST!0.23!1.53!REST;;chr3:14989024..14989041,+!p3@NR2C2!0.23!1.27!NR2C2;;chr3:169490606..169490621,+!p3@MYNN!0.23!1.27!MYNN;;chr4:87967906..87967931,+!p15@AFF1!0.23!1.27!AFF1;;chr1:41827095..41827155,+!p1@FOXO6!0.23!1.27!FOXO6;;chr1:8926369..8926385,-!p12@ENO1!0.23!1.27!ENO1;;chr20:46130727..46130734,+!p4@NCOA3!0.23!1.27!NCOA3;;chr1:27022270..27022282,+!p10@ARID1A!0.23!1.02!ARID1A;;chr6:45390599..45390662,+!p11@RUNX2!0.23!1.02!RUNX2;;chr9:86595113..86595141,-!p1@HNRNPK!0.22!359.26!HNRPK;;chr1:78444738..78444773,-!p1@FUBP1!0.22!160.43!FUBP1;;chr1:42800860..42800912,-!p1@FOXJ3!0.22!55.94!FOXJ3;;chr20:44718538..44718612,-!p1@NCOA5!0.22!40.43!NCOA5;;chr7:64467057..64467078,-!p1@ZNF117!0.22!27.71!ZNF117;;chr6:35464817..35464894,-!p1@TEAD3!0.22!22.63!TEAD3;;chr14:100705140..100705188,+!p2@YY1!0.22!21.10!YY1;;chr12:66218836..66218888,+!p1@HMGA2!0.22!13.48!HMGA2;;chr12:133758072..133758114,+!p1@ZNF268!0.22!12.71!ZNF268;;chr7:1570322..1570360,+!p1@MAFK!0.22!11.95!MAFK;;chr19:52511437..52511490,-!p1@ZNF615!0.22!8.14!ZNF615;;chr15:85144229..85144273,+!p1@ZSCAN2!0.22!7.37!ZSCAN2;;chr9:139294638..139294678,-!p@chr9:139294638..139294678,-!0.22!7.37!SNAPC4;;chr19:23433144..23433204,-!p1@ZNF724P!0.22!6.10!ZNF724P;;chr5:72744594..72744609,-!p1@FOXD1!0.22!6.10!FOXD1;;chr12:72058130..72058189,+!p2@THAP2!0.22!5.59!THAP2;;chr8:57123815..57123867,-!p1@PLAG1!0.22!5.34!PLAG1;;chr19:37958086..37958150,-!p1@ZNF569!0.22!5.09!ZNF569;;chr6:35310363..35310382,+!p3@PPARD!0.22!4.83!PPARD;;chr4:1873011..1873063,+!p2@WHSC1!0.22!4.32!WHSC1;;chr19:37341752..37341816,+!p1@ZNF345!0.22!3.81!ZNF345;;chr21:34144115..34144138,-!p2@GCFC1!0.22!3.56!GCFC1;;chr5:124082322..124082364,-!p1@ZNF608!0.22!3.05!ZNF608;;chr2:97202451..97202462,+!p2@ARID5A!0.22!2.54!ARID5A;;chr18:47814186..47814232,-!p2@CXXC1!0.22!2.29!CXXC1;;chr19:21512115..21512135,-!p3@ZNF708!0.22!2.29!ZNF708;;chr2:74375058..74375069,-!p3@BOLA3!0.22!2.03!BOLA3;;chr1:26496459..26496470,+!p2@ZNF593!0.22!2.03!ZNF593;;chr7:113726357..113726443,+!p1@FOXP2!0.22!1.78!FOXP2;;chr7:27788205..27788255,+!p2@TAX1BP1!0.22!1.53!TAX1BP1;;chrX:76937934..76937974,-!p3@ATRX!0.22!1.53!ATRX;;chr12:56583371..56583394,-!p2@SMARCC2!0.22!1.53!SMARCC2;;chr19:56152471..56152482,+!p6@ZNF580!0.22!1.53!ZNF580;;chr1:204042275..204042286,+!p4@SOX13!0.22!1.53!SOX13;;chr19:52391220..52391251,-!p2@ZNF577!0.22!1.27!ZNF577;;chr1:120190761..120190782,-!p2@ZNF697!0.22!1.27!ZNF697;;chr1:247095286..247095297,-!p4@AHCTF1!0.22!1.27!AHCTF1;;chr10:98592776..98592796,+!p4@LCOR!0.22!1.27!LCOR;;chr11:19263192..19263222,-!p2@E2F8!0.22!1.02!E2F8;;chr14:74206359..74206374,-!p8@C14orf43!0.22!1.02!C14orf43;;chr6:10415276..10415341,-!p2@TFAP2A!0.22!1.02!TFAP2A;;chr19:52839490..52839508,+!p2@ZNF610!0.22!1.02!ZNF610;;chr4:83821967..83821998,+!p3@THAP9!0.22!1.02!THAP9;;chr6:43140149..43140177,+!p8@SRF!0.22!0.76!SRF;;chr3:185826855..185826911,-!p1@ETV5!0.21!39.66!ETV5;;chr15:57025675..57025718,-!p1@ZNF280D!0.21!31.02!ZNF280D;;chr15:85291785..85291848,+!p1@ZNF592!0.21!25.93!ZNF592;;chr6:34204973..34204990,+!p4@HMGA1!0.21!19.07!HMGA1;;chr19:57946684..57946723,+!p1@ZNF749!0.21!15.76!ZNF749;;chr19:40562072..40562143,-!p1@ZNF780B!0.21!12.71!ZNF780B;;chr15:64752747..64752794,+!p1@ZNF609!0.21!12.20!ZNF609;;chr12:133614062..133614117,+!p1@ZNF84!0.21!8.90!ZNF84;;chr6:43138999..43139017,+!p2@SRF!0.21!8.14!SRF;;chr19:56652643..56652683,+!p1@ZNF444!0.21!7.37!ZNF444;;chr2:178128199..178128245,-!p3@NFE2L2!0.21!7.12!NFE2L2;;chrX:70503529..70503549,+!p2@NONO!0.21!7.12!NONO;;chr21:36262032..36262062,-!p5@RUNX1!0.21!3.05!RUNX1;;chr9:109625401..109625458,+!p1@ZNF462!0.21!3.05!ZNF462;;chr19:57901326..57901385,+!p2@ZNF548!0.21!2.80!ZNF548;;chr1:33721900..33721921,+!p2@ZNF362!0.21!2.80!ZNF362;;chr19:44645700..44645725,+!p3@ZNF226,p3@ZNF234!0.21!2.54!ZNF234;;chr1:149871171..149871192,+!p4@BOLA1!0.21!2.54!BOLA1;;chr15:90895471..90895543,+!p1@ZNF774!0.21!2.54!ZNF774;;chr6:91006518..91006570,-!p1@BACH2!0.21!2.54!BACH2;;chr1:154975110..154975149,+!p2@ZBTB7B!0.21!2.29!ZBTB7B;;chr20:50808667..50808729,-!p3@ZFP64!0.21!2.03!ZFP64;;chr19:42788611..42788634,+!p2@CIC!0.21!1.53!CIC;;chr20:52185447..52185462,-!p2@ZNF217!0.21!1.53!ZNF217;;chr17:56065484..56065497,-!p3@VEZF1!0.21!1.53!VEZF1;;chr15:67358128..67358133,+!p12@SMAD3!0.21!1.27!SMAD3;;chr16:54964740..54964789,+!p1@IRX5!0.21!1.27!IRX5;;chr8:128752771..128752843,+!p9@MYC!0.21!1.27!MYC;;chr1:78445179..78445193,-!p5@FUBP1!0.21!1.27!FUBP1;;chr14:62193465..62193490,+!p7@HIF1A!0.21!1.27!HIF1A;;chr13:46543859..46543881,-!p10@ZC3H13!0.21!1.02!ZC3H13;;chr14:105927191..105927216,+!p6@MTA1!0.21!1.02!MTA1;;chr16:30798476..30798483,-!p2@ZNF629!0.21!1.02!ZNF629;;chrX:131622958..131622978,-!p3@MBNL3!0.21!1.02!MBNL3;;chr3:39195139..39195150,-!p3@CSRNP1!0.21!1.02!CSRNP1;;
+|ffid_belonging_in_development=CL:0000223,UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=FF:0100353,FF:0101120
 |fonse_cell_line_closure=FF:0100353,FF:0101120

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FF:10709-109H7: Difference between revisions

From FANTOM5_SSTAR

Revision as of 19:41, 9 July 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0