FF:10708-109H6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005820 | ||
|accession_numbers=CAGE;DRX007825;DRR008697;DRZ000122;DRZ001507;DRZ011472;DRZ012857 | |||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0004821,UBERON:0004903,UBERON:0000479,UBERON:0000058,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0003914,UBERON:0007499,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0009569,UBERON:0005178,UBERON:0000487,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0003215,UBERON:0005181,UBERON:0010317,UBERON:0009856,UBERON:0010368,UBERON:0009911,UBERON:0002299,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915,UBERON:0006524,UBERON:0008874,UBERON:0002169,UBERON:0004894,UBERON:0002173,UBERON:0002186 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000082,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000322 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305,DOID:1325,DOID:3905,DOID:3908,DOID:3910,DOID:3904 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100353,FF:0102061,FF:0101120,FF:0100762,FF:0102058,FF:0102057,FF:0102060,FF:0104802 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100353,FF:0101120 | |fonse_cell_line=FF:0100353,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100353,FF:0101120 | |fonse_cell_line_closure=FF:0100353,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/alveolar%2520cell%2520carcinoma%2520cell%2520line%253aSW%25201573.CNhs11838.10708-109H6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/alveolar%2520cell%2520carcinoma%2520cell%2520line%253aSW%25201573.CNhs11838.10708-109H6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/alveolar%2520cell%2520carcinoma%2520cell%2520line%253aSW%25201573.CNhs11838.10708-109H6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/alveolar%2520cell%2520carcinoma%2520cell%2520line%253aSW%25201573.CNhs11838.10708-109H6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/alveolar%2520cell%2520carcinoma%2520cell%2520line%253aSW%25201573.CNhs11838.10708-109H6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10708-109H6 | |id=FF:10708-109H6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102060;;FF:0104802 | ||
|is_obsolete= | |||
|library_id=CNhs11838 | |||
|library_id_phase_based=2:CNhs11838 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10708 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10708 | |||
|name=alveolar cell carcinoma cell line:SW 1573 | |name=alveolar cell carcinoma cell line:SW 1573 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11838,LSID829,release010,COMPLETED | |profile_hcage=CNhs11838,LSID829,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.107418721084071,0,-0.277362132193514,0.233719272338702,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0447119393630884,0,0,0,0,0,0.0106531747172817,0,0,0.250980923912589,0,0,0,0,0,0,0,0,0,0,0.329711960473604,0,-0.0988669629934832,0.195421469921608,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,0.170744389927852,0,0,0.232368333260507,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108611070985339,0,0,0,0,0,0,0,0,0,0,-0.00430698359190029,0,0,0,0.0455612861092484,0.0810451851745885,0,0.824953455766075,0,0,0.285902162453745,0.183724059705396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0420680584297913,0.195421469921608,0,0,-0.0535554956023889,-0.223078021365773,0,0,0.211206452280044,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.108611070985339,0.285902162453745,0,0,0.383937513691451,0,0,0,0,0,0.824953455766075,0,0,0.0205578758848927,0,0.0770251563240262,0.124221608646985,0,0,0.217391057516546,0,0,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0.108611070985339,0,-0.0186252810838506,-0.305472230898407,0,-0.0094020809127079,0.199392490093089,0,0,0,0,-0.17252993437352,0,-0.120879483793741,0.392798921692471,-0.159632104149226,0.299704377227204,-0.055712496781182,0,0,0,-0.443170189270514,-0.0802758722629808,0,0,-0.121779851751874,0.332029709775644,0,0,-0.391044581551635,0,-0.0583350573694794,-0.0604397418968705,0,0.330396357881764,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.257496579061945,0.159007774374494,0,0.267736751170457,0,-0.061627948840349,0,0.0113463760373471,1.04175368273715,0.17261791801665,0,0.0279097930281186,0,-0.302389727009913,-0.00382959251402598,0.371236252301061,0.0455612861092484,-0.147401849371139,0.00543975037176114,0,-0.0459186480954974,0.165832344560907,-0.0407736708561101,-0.0166787250995455,0.0801948895103222,0.0825724176199414,0.116540794099422,0,0,0,-0.289624697221541,0,0,-0.106177200785322,0.060825813634619,-0.0462166549699327,0.266614670785049,-0.129709704183105,-0.0243554394918764,-0.0395325284566706,-0.0734989392051434,0.0672757880634694,0.161176483506498,-0.00522915141124902,0,-0.0323107604389152,0.0138520902385869,-0.170435766740589,0.37576404979958,0,0.213069234388022,-0.0683442610773682,0,0.386238593920162,0.128239868333961,0.383937513691451,0.195421469921608,0.471560033030995,0,0,0.0207206031121083,0,0,0.208832145676946,0.132029653368918,-0.0374340916339363,0,-0.0606954070574045,0.0525306870996137,-0.199575345391783,0,0.0492213986560065,0.0655659895596516,-0.0610035309383544,0.0412618291491682,0,-0.110648256808979,0.353675394954294,-0.117438228072672,0.162090370349177,0.050164244173514,-0.179360558699697,0.152016967664975,-0.0263633780100208,-0.356801996579939,0,-0.0881268324752877,0,-0.299059574777466,-0.247360263411237,0.104938702387713,0.39894211654243,0,-0.13974248924426,0,0.0104218264377585,0,-0.235563609654287,0.131088044925844,0.205113146431897,0.0818071134447553,0,0.0790449167538921,-0.679519866788635,0,0.181284979547533,0,0,-0.150367083334639,0.500275593764324,-0.0596341574111154,0.0529793001665308,0,-0.357942290179369,0,0,0.212902781483938,0.148461475927063,0,0.0979670542599401,0.111951412634731,0.238820985052953,0.0794503964866744,0.108611070985339,0,0.319969201236617,0,0,-0.0909702261102218,0,-0.00430698359190029,0.222192748529132,0,0.056233170782546,0,0,-0.177527765965176,0.108611070985339,-0.0488142151539335,0,0,0.241008160164924,0,0,0,0,0.06221322829614,0.0579318449131528,0,0,0,0,0,0,0.280509802721063,0.0773045379938395,0,0.332950919380932,0,0,0,0.80608406501958,0,0,0,0,1.11971786309663,0.103985997459405,0.0724040542451882,0,0,0.0543055354926695,0,0.45579839384561,-0.0946254911093845,0,0.0635587634239768,0,0,0,0,0.0224700811961279,0,0,0.0543055354926695,0,0.0508806139316752,0.064038560277697,0,0,0,0.367448119410793,0,0,0,0,-0.057955023741505,0,0,-0.0808187983103453,0,-0.0642032796841776,0.0270291914384978,0,-0.091390355865822,-0.0156590118457216,0.0708627547212357,0,0,0.214171958226001,0,0.0543055354926695,0.213597241378311,0,0,0.00694536308186945,0,0,0,0,0.108611070985339,0,-0.214314512399756,0,0,0,0,0,0.267736751170457,0,0,0,0,0,-0.200713439636247,0.103197413263098,0.329711960473604,0,0,0,0,0,0,0.0301995124137665,0.21915426954852,0.0543055354926695,0,0,0,0,0,0,0,0.437241534114475,0,0,0,0,0,0.170744389927852,0,0,0,0,0.358827473692064,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.306543979929367,0,0,0,0,0,0,0,0.276278076869944,0,0.108611070985339,0,0,0.0815370962126313,0,0,0,0.446314990286878,0,0.107418721084071,0,0,0,0,0,0.108611070985339,0.0543055354926695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0475359287318349,0,-0.0917860460513013,0,0,0,-0.134917617672238,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195421469921608,0,0,0,0,0,0.097710734960804,0.150048321048392,0,0,0,0,0,0,0,0.0106531747172817,0,0,0.103388660121082,0,0,0,0,0.0175851407878904,0,0.010747515165321,-0.228914864330478,0.035663090419126,0,0,0,0.399442906630633,0,0,0.03280395658328,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108611070985339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0447119393630884,0,0,0,0,0,0,0,0,0,0,0,0,0.216068934105143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0543055354926695,0,0,0,0,0,0,0.154162547802482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108611070985339,0.11540300165297,0,0,0,-0.0176647597354352,0,0,0,0,0,0,0.195421469921608,0,0.195421469921608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195421469921608,0,0,0,-0.210007397028786,0,0,0,0,0,0,0,0,0.329711960473604,0,0,0,0,0.383915792971233,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0.108611070985339,0,0,0,0,0.373130552330236,0,0,0,0,0.14778435926069,0,0,0,0,0,0,0,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,0.29750076678753,0,0,-0.0988669629934832,0,0,0.09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| |||
|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=59.67872 | |rna_weight_ug=59.67872 | ||
|sample_age=44 | |sample_age=44 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=CRL-2170 | |sample_cell_catalog=CRL-2170 | ||
|sample_cell_line=SW 1573 | |sample_cell_line=SW 1573 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.49630291413998e-265!GO:0043226;organelle;1.60376405889666e-227!GO:0043229;intracellular organelle;7.33160168439234e-227!GO:0043231;intracellular membrane-bound organelle;4.59781503258394e-226!GO:0043227;membrane-bound organelle;4.78255684648789e-226!GO:0005737;cytoplasm;1.07576621784586e-174!GO:0044422;organelle part;1.71610296173593e-172!GO:0044446;intracellular organelle part;6.68859385955582e-171!GO:0044444;cytoplasmic part;1.56215010250936e-127!GO:0032991;macromolecular complex;2.62314016739989e-124!GO:0005634;nucleus;1.21153572156841e-104!GO:0044237;cellular metabolic process;4.91934060007925e-101!GO:0044238;primary metabolic process;1.19095707873705e-100!GO:0030529;ribonucleoprotein complex;5.05515591836054e-100!GO:0043170;macromolecule metabolic process;1.77091786060541e-97!GO:0044428;nuclear part;2.85792846848421e-89!GO:0043233;organelle lumen;1.4956905642758e-82!GO:0031974;membrane-enclosed lumen;1.4956905642758e-82!GO:0003723;RNA binding;5.11421403434188e-78!GO:0005739;mitochondrion;1.10259887456547e-75!GO:0005515;protein binding;1.05417203327869e-64!GO:0043234;protein complex;2.52291993715846e-64!GO:0043283;biopolymer metabolic process;2.1259733132588e-59!GO:0006396;RNA processing;8.08724665726182e-58!GO:0005840;ribosome;3.40264923965925e-57!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.68652429482161e-54!GO:0006412;translation;1.26713452491052e-51!GO:0016043;cellular component organization and biogenesis;3.73772661459797e-51!GO:0010467;gene expression;6.31282385441494e-51!GO:0031090;organelle membrane;7.08774755222987e-51!GO:0031981;nuclear lumen;1.34767589400781e-50!GO:0044429;mitochondrial part;2.48247376228856e-50!GO:0003735;structural constituent of ribosome;3.75638941512073e-50!GO:0019538;protein metabolic process;3.4989794934343e-49!GO:0031967;organelle envelope;1.43225578092008e-46!GO:0031975;envelope;2.42752525753587e-46!GO:0044267;cellular protein metabolic process;8.54874553157363e-45!GO:0016071;mRNA metabolic process;1.04411126165944e-44!GO:0043228;non-membrane-bound organelle;3.77874359414367e-44!GO:0043232;intracellular non-membrane-bound organelle;3.77874359414367e-44!GO:0044260;cellular macromolecule metabolic process;3.77874359414367e-44!GO:0033279;ribosomal subunit;8.37119596911095e-44!GO:0006259;DNA metabolic process;8.12957232699755e-43!GO:0008380;RNA splicing;1.75939826476133e-41!GO:0044249;cellular biosynthetic process;8.38763448043446e-41!GO:0033036;macromolecule localization;2.0486422262044e-39!GO:0006397;mRNA processing;3.38530532580225e-39!GO:0015031;protein transport;1.41140573052576e-38!GO:0007049;cell cycle;2.92713538840644e-38!GO:0009058;biosynthetic process;8.20312418711342e-38!GO:0006996;organelle organization and biogenesis;2.06752000540325e-37!GO:0005829;cytosol;1.42943438843472e-36!GO:0009059;macromolecule biosynthetic process;1.46955369405396e-36!GO:0045184;establishment of protein localization;5.30666133934997e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.47849246667525e-36!GO:0003676;nucleic acid binding;1.57493174676433e-35!GO:0008104;protein localization;1.6705709739845e-35!GO:0046907;intracellular transport;2.3117031919821e-35!GO:0065003;macromolecular complex assembly;6.93387589067046e-34!GO:0000166;nucleotide binding;4.03240766161122e-33!GO:0005681;spliceosome;3.055808969705e-31!GO:0005740;mitochondrial envelope;4.13594891016917e-31!GO:0005654;nucleoplasm;1.05777447756471e-30!GO:0019866;organelle inner membrane;1.46489291606379e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.7207961205195e-30!GO:0022607;cellular component assembly;2.1587680506399e-29!GO:0022402;cell cycle process;3.13632054668451e-29!GO:0031966;mitochondrial membrane;4.77846878390381e-29!GO:0000278;mitotic cell cycle;2.53497924693459e-28!GO:0005743;mitochondrial inner membrane;1.00325905328906e-27!GO:0006886;intracellular protein transport;4.09431532298469e-27!GO:0006974;response to DNA damage stimulus;2.81065528150028e-26!GO:0044451;nucleoplasm part;1.40328541304029e-24!GO:0016070;RNA metabolic process;2.24965996138257e-24!GO:0016462;pyrophosphatase activity;2.62281220571494e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.26306482251107e-24!GO:0051649;establishment of cellular localization;4.37098979087201e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;4.37098979087201e-24!GO:0017111;nucleoside-triphosphatase activity;5.50780347745261e-24!GO:0044445;cytosolic part;6.05167676823307e-24!GO:0051641;cellular localization;6.22648652537969e-24!GO:0032553;ribonucleotide binding;1.50593423989122e-23!GO:0032555;purine ribonucleotide binding;1.50593423989122e-23!GO:0005694;chromosome;1.63878590964187e-23!GO:0000087;M phase of mitotic cell cycle;1.65012188765654e-23!GO:0015934;large ribosomal subunit;2.01567699368613e-23!GO:0006281;DNA repair;2.5615057153848e-23!GO:0031980;mitochondrial lumen;2.86925393565295e-23!GO:0005759;mitochondrial matrix;2.86925393565295e-23!GO:0017076;purine nucleotide binding;2.93997260106318e-23!GO:0006119;oxidative phosphorylation;4.0719059358441e-23!GO:0007067;mitosis;4.65139047711065e-23!GO:0044455;mitochondrial membrane part;6.33361389960256e-23!GO:0051301;cell division;1.43751817238549e-22!GO:0005524;ATP binding;1.98495625844592e-22!GO:0032559;adenyl ribonucleotide binding;2.24002527065461e-22!GO:0022403;cell cycle phase;6.24370162084852e-22!GO:0030554;adenyl nucleotide binding;8.59984712078777e-22!GO:0015935;small ribosomal subunit;1.4872013643138e-21!GO:0044427;chromosomal part;2.78151375348861e-21!GO:0012505;endomembrane system;3.01710265532647e-21!GO:0016874;ligase activity;1.95187641373942e-20!GO:0006457;protein folding;2.49548027651269e-20!GO:0005730;nucleolus;4.18727807948435e-20!GO:0000279;M phase;8.92059013107219e-20!GO:0006512;ubiquitin cycle;1.22598847976854e-19!GO:0022618;protein-RNA complex assembly;1.93491779715344e-19!GO:0009719;response to endogenous stimulus;8.98928843981679e-19!GO:0051276;chromosome organization and biogenesis;1.09116143447162e-18!GO:0006260;DNA replication;2.15528029572884e-18!GO:0005746;mitochondrial respiratory chain;4.46190795511136e-18!GO:0044265;cellular macromolecule catabolic process;1.05488647092468e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.2571586811614e-17!GO:0042254;ribosome biogenesis and assembly;4.15763589734858e-17!GO:0005761;mitochondrial ribosome;8.41625904932293e-17!GO:0000313;organellar ribosome;8.41625904932293e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.01518121900479e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;1.44000246452557e-16!GO:0000375;RNA splicing, via transesterification reactions;1.44000246452557e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.44000246452557e-16!GO:0050136;NADH dehydrogenase (quinone) activity;2.834253696041e-16!GO:0003954;NADH dehydrogenase activity;2.834253696041e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.834253696041e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.23302696517511e-16!GO:0008135;translation factor activity, nucleic acid binding;4.5401472386127e-16!GO:0016887;ATPase activity;5.86772815362087e-16!GO:0042623;ATPase activity, coupled;6.25508050879115e-16!GO:0048770;pigment granule;7.72938414367751e-16!GO:0042470;melanosome;7.72938414367751e-16!GO:0005635;nuclear envelope;8.76669894339203e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.16269649833584e-15!GO:0031965;nuclear membrane;1.47091257535561e-15!GO:0019941;modification-dependent protein catabolic process;1.96899062742258e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.96899062742258e-15!GO:0051726;regulation of cell cycle;2.22348683320368e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.59061952498875e-15!GO:0044453;nuclear membrane part;3.11746360716414e-15!GO:0044257;cellular protein catabolic process;3.42314094576242e-15!GO:0000074;regulation of progression through cell cycle;5.72749749014496e-15!GO:0043412;biopolymer modification;7.82966190220241e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.09274952709242e-15!GO:0043285;biopolymer catabolic process;1.43412352163878e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.90558570143041e-14!GO:0005783;endoplasmic reticulum;1.90558570143041e-14!GO:0042775;organelle ATP synthesis coupled electron transport;2.34572517506054e-14!GO:0042773;ATP synthesis coupled electron transport;2.34572517506054e-14!GO:0030964;NADH dehydrogenase complex (quinone);3.33394332424207e-14!GO:0045271;respiratory chain complex I;3.33394332424207e-14!GO:0005747;mitochondrial respiratory chain complex I;3.33394332424207e-14!GO:0006605;protein targeting;3.94855164239877e-14!GO:0044432;endoplasmic reticulum part;5.1379403700512e-14!GO:0051082;unfolded protein binding;5.62566520558515e-14!GO:0009057;macromolecule catabolic process;5.81450380021909e-14!GO:0044248;cellular catabolic process;6.01086652135917e-14!GO:0051186;cofactor metabolic process;7.01416158444876e-14!GO:0006323;DNA packaging;7.44860388861123e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.24326783877481e-14!GO:0008134;transcription factor binding;1.23569474802371e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.34456709085504e-13!GO:0004386;helicase activity;3.3716890660844e-13!GO:0048193;Golgi vesicle transport;7.93968581122241e-13!GO:0006464;protein modification process;7.95248024180845e-13!GO:0015630;microtubule cytoskeleton;2.11086455928258e-12!GO:0003743;translation initiation factor activity;3.14796887634702e-12!GO:0006913;nucleocytoplasmic transport;4.23277027776956e-12!GO:0043687;post-translational protein modification;5.82405334330049e-12!GO:0016604;nuclear body;5.91393149134621e-12!GO:0006399;tRNA metabolic process;7.0926053309256e-12!GO:0030163;protein catabolic process;7.1958761147267e-12!GO:0005643;nuclear pore;7.3715893550892e-12!GO:0051169;nuclear transport;1.11706233334051e-11!GO:0000785;chromatin;1.22665108457376e-11!GO:0006366;transcription from RNA polymerase II promoter;1.37658798438627e-11!GO:0006413;translational initiation;2.07191099383435e-11!GO:0006364;rRNA processing;2.17244405621447e-11!GO:0009259;ribonucleotide metabolic process;2.89344151464013e-11!GO:0005794;Golgi apparatus;3.12975762409699e-11!GO:0008026;ATP-dependent helicase activity;3.32712085720304e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.87461285475204e-11!GO:0012501;programmed cell death;5.16080251930119e-11!GO:0006915;apoptosis;6.03726293155758e-11!GO:0016072;rRNA metabolic process;6.03726293155758e-11!GO:0006403;RNA localization;9.15568901210725e-11!GO:0065002;intracellular protein transport across a membrane;1.24736456731106e-10!GO:0050657;nucleic acid transport;1.25912715812496e-10!GO:0051236;establishment of RNA localization;1.25912715812496e-10!GO:0050658;RNA transport;1.25912715812496e-10!GO:0006163;purine nucleotide metabolic process;1.39365955051497e-10!GO:0065004;protein-DNA complex assembly;1.66656809866632e-10!GO:0005789;endoplasmic reticulum membrane;1.91188100538949e-10!GO:0008219;cell death;1.91188100538949e-10!GO:0016265;death;1.91188100538949e-10!GO:0006446;regulation of translational initiation;1.92999416155725e-10!GO:0006732;coenzyme metabolic process;2.11816979579909e-10!GO:0030532;small nuclear ribonucleoprotein complex;2.68751225504213e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.00242492227113e-10!GO:0006333;chromatin assembly or disassembly;4.07814332424089e-10!GO:0009055;electron carrier activity;4.13964239790406e-10!GO:0009150;purine ribonucleotide metabolic process;5.34892605115104e-10!GO:0016192;vesicle-mediated transport;5.75313390019136e-10!GO:0046930;pore complex;6.40765889588736e-10!GO:0006164;purine nucleotide biosynthetic process;1.20581961101943e-09!GO:0009260;ribonucleotide biosynthetic process;1.23722730724611e-09!GO:0008639;small protein conjugating enzyme activity;1.51609183015299e-09!GO:0000775;chromosome, pericentric region;1.62754575002246e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.10399304745506e-09!GO:0009141;nucleoside triphosphate metabolic process;2.68266129427082e-09!GO:0005819;spindle;2.6894973530447e-09!GO:0043566;structure-specific DNA binding;2.90272146269974e-09!GO:0004842;ubiquitin-protein ligase activity;3.006393914877e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.05910648740207e-09!GO:0016607;nuclear speck;3.68308639586039e-09!GO:0005815;microtubule organizing center;4.31365304180148e-09!GO:0005813;centrosome;4.38254859703967e-09!GO:0003712;transcription cofactor activity;4.49755745977869e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.49755745977869e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.49755745977869e-09!GO:0009152;purine ribonucleotide biosynthetic process;4.54131681862031e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.78459890323558e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.92013587136629e-09!GO:0004812;aminoacyl-tRNA ligase activity;5.92013587136629e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.92013587136629e-09!GO:0019787;small conjugating protein ligase activity;7.09772653595528e-09!GO:0006461;protein complex assembly;7.21956201179937e-09!GO:0007005;mitochondrion organization and biogenesis;1.01959064928282e-08!GO:0043038;amino acid activation;1.02098973032466e-08!GO:0006418;tRNA aminoacylation for protein translation;1.02098973032466e-08!GO:0043039;tRNA aminoacylation;1.02098973032466e-08!GO:0006261;DNA-dependent DNA replication;1.05700145661405e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.15554893086232e-08!GO:0051028;mRNA transport;1.19146252315932e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.35179118679694e-08!GO:0003697;single-stranded DNA binding;1.51241997715487e-08!GO:0016568;chromatin modification;1.70750791800108e-08!GO:0008565;protein transporter activity;1.72888528505851e-08!GO:0050794;regulation of cellular process;2.04032580747152e-08!GO:0046034;ATP metabolic process;2.398809508213e-08!GO:0016740;transferase activity;2.47441640535199e-08!GO:0000245;spliceosome assembly;2.53227530193952e-08!GO:0009060;aerobic respiration;2.74056007090324e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.0723050610537e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.0723050610537e-08!GO:0015986;ATP synthesis coupled proton transport;3.53196286056787e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.53196286056787e-08!GO:0017038;protein import;3.63140926560416e-08!GO:0019829;cation-transporting ATPase activity;5.06744391577501e-08!GO:0016881;acid-amino acid ligase activity;5.44083221837961e-08!GO:0005667;transcription factor complex;6.51365698235615e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.7249426406529e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.7249426406529e-08!GO:0016563;transcription activator activity;7.28811073789561e-08!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.46932893156871e-08!GO:0045333;cellular respiration;8.76560202823493e-08!GO:0005793;ER-Golgi intermediate compartment;1.37751471310171e-07!GO:0016779;nucleotidyltransferase activity;1.43722942362604e-07!GO:0048523;negative regulation of cellular process;1.52020618770493e-07!GO:0006334;nucleosome assembly;1.73210344765866e-07!GO:0009117;nucleotide metabolic process;1.91391052503314e-07!GO:0051188;cofactor biosynthetic process;2.1341235384893e-07!GO:0016787;hydrolase activity;2.18099157039326e-07!GO:0009056;catabolic process;2.45857667792116e-07!GO:0051329;interphase of mitotic cell cycle;2.69068210167187e-07!GO:0007051;spindle organization and biogenesis;3.16485399615468e-07!GO:0006754;ATP biosynthetic process;3.3625394956432e-07!GO:0006753;nucleoside phosphate metabolic process;3.3625394956432e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.50847755849037e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.50847755849037e-07!GO:0031497;chromatin assembly;3.86491935952114e-07!GO:0032446;protein modification by small protein conjugation;4.58815363600454e-07!GO:0005657;replication fork;5.66223416638304e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.73857896831807e-07!GO:0006099;tricarboxylic acid cycle;6.06804240717869e-07!GO:0046356;acetyl-CoA catabolic process;6.06804240717869e-07!GO:0045259;proton-transporting ATP synthase complex;7.67758125337422e-07!GO:0006793;phosphorus metabolic process;9.11169805983086e-07!GO:0006796;phosphate metabolic process;9.11169805983086e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.11169805983086e-07!GO:0016567;protein ubiquitination;9.63752639066568e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.01407750933671e-06!GO:0005768;endosome;1.12429430328587e-06!GO:0006084;acetyl-CoA metabolic process;1.19652499544144e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.65697433318423e-06!GO:0003724;RNA helicase activity;1.6746226680558e-06!GO:0000151;ubiquitin ligase complex;1.88463263872379e-06!GO:0005762;mitochondrial large ribosomal subunit;2.18226884826857e-06!GO:0000315;organellar large ribosomal subunit;2.18226884826857e-06!GO:0004298;threonine endopeptidase activity;2.22215272440649e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.25741713654322e-06!GO:0008094;DNA-dependent ATPase activity;2.2641520492108e-06!GO:0000075;cell cycle checkpoint;2.29543084941786e-06!GO:0045786;negative regulation of progression through cell cycle;2.32073698220494e-06!GO:0031324;negative regulation of cellular metabolic process;2.32644537527045e-06!GO:0051325;interphase;2.77553136653658e-06!GO:0003899;DNA-directed RNA polymerase activity;2.96950134960016e-06!GO:0042981;regulation of apoptosis;3.07244776101129e-06!GO:0048519;negative regulation of biological process;3.1585459242853e-06!GO:0006302;double-strand break repair;3.17715008476787e-06!GO:0003713;transcription coactivator activity;3.86224871393464e-06!GO:0043623;cellular protein complex assembly;3.87566658247814e-06!GO:0043067;regulation of programmed cell death;4.50635808537916e-06!GO:0016310;phosphorylation;4.50635808537916e-06!GO:0009109;coenzyme catabolic process;5.81089373742056e-06!GO:0009108;coenzyme biosynthetic process;6.09724337634788e-06!GO:0051170;nuclear import;6.42191683069849e-06!GO:0030120;vesicle coat;6.45917772942818e-06!GO:0030662;coated vesicle membrane;6.45917772942818e-06!GO:0051187;cofactor catabolic process;6.69994800853457e-06!GO:0006752;group transfer coenzyme metabolic process;8.33736232767034e-06!GO:0051427;hormone receptor binding;8.66022922262588e-06!GO:0009892;negative regulation of metabolic process;9.97532153028151e-06!GO:0016363;nuclear matrix;1.16732031793276e-05!GO:0003682;chromatin binding;1.21862450167733e-05!GO:0051168;nuclear export;1.34470487449126e-05!GO:0003924;GTPase activity;1.5867648083402e-05!GO:0000314;organellar small ribosomal subunit;1.61043399684151e-05!GO:0005763;mitochondrial small ribosomal subunit;1.61043399684151e-05!GO:0006606;protein import into nucleus;1.6909121716321e-05!GO:0003690;double-stranded DNA binding;1.73896425396902e-05!GO:0035257;nuclear hormone receptor binding;2.0087219763893e-05!GO:0044431;Golgi apparatus part;2.37078257742322e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.45417373620049e-05!GO:0043069;negative regulation of programmed cell death;2.4752480993578e-05!GO:0006613;cotranslational protein targeting to membrane;2.64617690432267e-05!GO:0044440;endosomal part;2.71632723873181e-05!GO:0010008;endosome membrane;2.71632723873181e-05!GO:0019222;regulation of metabolic process;2.93180009503568e-05!GO:0043066;negative regulation of apoptosis;3.06098776820981e-05!GO:0050789;regulation of biological process;3.33717029745058e-05!GO:0048475;coated membrane;3.48784107397448e-05!GO:0030117;membrane coat;3.48784107397448e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.90047198622365e-05!GO:0005788;endoplasmic reticulum lumen;4.1274328293197e-05!GO:0007088;regulation of mitosis;4.17386078519895e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.24064464348774e-05!GO:0015399;primary active transmembrane transporter activity;4.24064464348774e-05!GO:0008186;RNA-dependent ATPase activity;4.73316434162798e-05!GO:0005874;microtubule;5.11055772354793e-05!GO:0000776;kinetochore;5.26679075819481e-05!GO:0006916;anti-apoptosis;5.87885269263992e-05!GO:0004674;protein serine/threonine kinase activity;6.3697018588588e-05!GO:0005798;Golgi-associated vesicle;7.08541164353195e-05!GO:0003684;damaged DNA binding;7.56578315623528e-05!GO:0045454;cell redox homeostasis;7.73102441860664e-05!GO:0044452;nucleolar part;7.74684201732636e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;7.89727605613128e-05!GO:0007059;chromosome segregation;7.89727605613128e-05!GO:0019899;enzyme binding;8.640895787951e-05!GO:0043021;ribonucleoprotein binding;9.06760946710099e-05!GO:0006310;DNA recombination;9.23197845570015e-05!GO:0051246;regulation of protein metabolic process;0.000100803936919237!GO:0000786;nucleosome;0.000108600884212653!GO:0016481;negative regulation of transcription;0.000109215890646438!GO:0016491;oxidoreductase activity;0.000125701143721074!GO:0016859;cis-trans isomerase activity;0.000127760069795494!GO:0008654;phospholipid biosynthetic process;0.000128798158798093!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000142738961735148!GO:0003729;mRNA binding;0.000142738961735148!GO:0004004;ATP-dependent RNA helicase activity;0.00014488891167682!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000161659456568218!GO:0007093;mitotic cell cycle checkpoint;0.0001669544267697!GO:0006383;transcription from RNA polymerase III promoter;0.000172383134995849!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00017295875211164!GO:0031988;membrane-bound vesicle;0.000179127222154011!GO:0006402;mRNA catabolic process;0.00018104382041599!GO:0006626;protein targeting to mitochondrion;0.000183876228068214!GO:0016853;isomerase activity;0.000189746774661596!GO:0007017;microtubule-based process;0.000190814386605306!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000198403620731553!GO:0008033;tRNA processing;0.000200918852237229!GO:0016023;cytoplasmic membrane-bound vesicle;0.00021980482132739!GO:0005770;late endosome;0.00024444587681265!GO:0015980;energy derivation by oxidation of organic compounds;0.000277278186806291!GO:0009165;nucleotide biosynthetic process;0.000277388458205932!GO:0003678;DNA helicase activity;0.000278048943884544!GO:0006091;generation of precursor metabolites and energy;0.000288442369917922!GO:0000059;protein import into nucleus, docking;0.000298136909981758!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0003040369711507!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000312667958443241!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000317891562304068!GO:0006839;mitochondrial transport;0.00033297814221627!GO:0006401;RNA catabolic process;0.000361155757928697!GO:0005684;U2-dependent spliceosome;0.000425019247127778!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000454957162105086!GO:0000139;Golgi membrane;0.000475756923903851!GO:0006414;translational elongation;0.00049231240039616!GO:0008361;regulation of cell size;0.000492446607233348!GO:0007052;mitotic spindle organization and biogenesis;0.00052740256106872!GO:0005525;GTP binding;0.00055145916832356!GO:0006350;transcription;0.000577262511724581!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000577262511724581!GO:0030867;rough endoplasmic reticulum membrane;0.000609168836422152!GO:0032508;DNA duplex unwinding;0.000611566667540193!GO:0032392;DNA geometric change;0.000611566667540193!GO:0005637;nuclear inner membrane;0.000612299440179995!GO:0016049;cell growth;0.00063907317291594!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000659193688553635!GO:0043492;ATPase activity, coupled to movement of substances;0.000695328299675021!GO:0006352;transcription initiation;0.00070040296704917!GO:0004527;exonuclease activity;0.000701298995733344!GO:0005885;Arp2/3 protein complex;0.000732416673197576!GO:0005876;spindle microtubule;0.00073638788498102!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00076758022701027!GO:0043681;protein import into mitochondrion;0.00076758022701027!GO:0016564;transcription repressor activity;0.000780261593435953!GO:0008022;protein C-terminus binding;0.000791035347102305!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000806987833420049!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000843122113896374!GO:0033116;ER-Golgi intermediate compartment membrane;0.00090321865397941!GO:0031323;regulation of cellular metabolic process;0.000903662897113839!GO:0005769;early endosome;0.000917932299423979!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000956892934345879!GO:0019867;outer membrane;0.000965362260080318!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000979376951500262!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000979376951500262!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000979376951500262!GO:0045941;positive regulation of transcription;0.00102831208711575!GO:0016741;transferase activity, transferring one-carbon groups;0.00102831208711575!GO:0001558;regulation of cell growth;0.00107281572696321!GO:0005048;signal sequence binding;0.00108073113336256!GO:0043624;cellular protein complex disassembly;0.00108566740631497!GO:0031968;organelle outer membrane;0.0011410856804213!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00116956410299994!GO:0019843;rRNA binding;0.00120937941182747!GO:0007050;cell cycle arrest;0.00120937941182747!GO:0008168;methyltransferase activity;0.00125564002499759!GO:0006818;hydrogen transport;0.00133833645387197!GO:0031982;vesicle;0.00135924891250529!GO:0006612;protein targeting to membrane;0.00138174699906853!GO:0006289;nucleotide-excision repair;0.00138194166597877!GO:0015631;tubulin binding;0.00138777737506464!GO:0031072;heat shock protein binding;0.00139650278752461!GO:0051789;response to protein stimulus;0.00141475061930682!GO:0006986;response to unfolded protein;0.00141475061930682!GO:0051920;peroxiredoxin activity;0.00141694325338056!GO:0006268;DNA unwinding during replication;0.00146089589536524!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00164670463673581!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00164670463673581!GO:0046474;glycerophospholipid biosynthetic process;0.00170774958620644!GO:0015992;proton transport;0.00184313926521923!GO:0030880;RNA polymerase complex;0.00192300757537091!GO:0006284;base-excision repair;0.00192300757537091!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00193259179105553!GO:0000287;magnesium ion binding;0.00194701606196492!GO:0030176;integral to endoplasmic reticulum membrane;0.00194701606196492!GO:0031410;cytoplasmic vesicle;0.00199552856991805!GO:0051252;regulation of RNA metabolic process;0.00199831244592112!GO:0045893;positive regulation of transcription, DNA-dependent;0.00203566522684975!GO:0006220;pyrimidine nucleotide metabolic process;0.00203962704581646!GO:0051087;chaperone binding;0.00218427002575224!GO:0000922;spindle pole;0.00219758288184583!GO:0031252;leading edge;0.00223935964737191!GO:0043596;nuclear replication fork;0.00229146608765205!GO:0016272;prefoldin complex;0.00229146608765205!GO:0032984;macromolecular complex disassembly;0.00229746349095826!GO:0006270;DNA replication initiation;0.00240041849660111!GO:0008632;apoptotic program;0.00258147703846422!GO:0051052;regulation of DNA metabolic process;0.00259950750520387!GO:0000082;G1/S transition of mitotic cell cycle;0.0026393374192186!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00266029721648727!GO:0048500;signal recognition particle;0.00270748441015414!GO:0048471;perinuclear region of cytoplasm;0.0027843056114457!GO:0005773;vacuole;0.00316228217490897!GO:0000910;cytokinesis;0.00327920809406508!GO:0006892;post-Golgi vesicle-mediated transport;0.00339564773483078!GO:0000725;recombinational repair;0.00347462843841694!GO:0000724;double-strand break repair via homologous recombination;0.00347462843841694!GO:0004518;nuclease activity;0.00348301693123966!GO:0006405;RNA export from nucleus;0.00348301693123966!GO:0007010;cytoskeleton organization and biogenesis;0.00350042303809313!GO:0043241;protein complex disassembly;0.00357344701739913!GO:0006497;protein amino acid lipidation;0.00361208845970113!GO:0016301;kinase activity;0.00364514040908162!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00390065204835399!GO:0000428;DNA-directed RNA polymerase complex;0.00390065204835399!GO:0048468;cell development;0.00390624448561835!GO:0008312;7S RNA binding;0.00390876540222568!GO:0006891;intra-Golgi vesicle-mediated transport;0.0039961315704522!GO:0035258;steroid hormone receptor binding;0.00415309137283676!GO:0046489;phosphoinositide biosynthetic process;0.00419566706673177!GO:0031124;mRNA 3'-end processing;0.00426069558980156!GO:0005905;coated pit;0.00449101172597108!GO:0003702;RNA polymerase II transcription factor activity;0.00456456807458826!GO:0007006;mitochondrial membrane organization and biogenesis;0.00457660001873097!GO:0030663;COPI coated vesicle membrane;0.00470808638919319!GO:0030126;COPI vesicle coat;0.00470808638919319!GO:0016197;endosome transport;0.00493715687284042!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00503361388090336!GO:0043488;regulation of mRNA stability;0.00506825651456282!GO:0043487;regulation of RNA stability;0.00506825651456282!GO:0006611;protein export from nucleus;0.00530744836398052!GO:0032561;guanyl ribonucleotide binding;0.00541042140257764!GO:0019001;guanyl nucleotide binding;0.00541042140257764!GO:0042770;DNA damage response, signal transduction;0.00541203506387548!GO:0016251;general RNA polymerase II transcription factor activity;0.00557899348068099!GO:0010468;regulation of gene expression;0.00564215787326625!GO:0003714;transcription corepressor activity;0.00586084977893988!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00586084977893988!GO:0005741;mitochondrial outer membrane;0.00589132063972195!GO:0030521;androgen receptor signaling pathway;0.00597019188511797!GO:0050662;coenzyme binding;0.00604850636159107!GO:0030132;clathrin coat of coated pit;0.00610456940531999!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00610456940531999!GO:0065009;regulation of a molecular function;0.00616983675592255!GO:0004003;ATP-dependent DNA helicase activity;0.00634300073621127!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00655345632544792!GO:0045047;protein targeting to ER;0.00655345632544792!GO:0007346;regulation of progression through mitotic cell cycle;0.00678688903095084!GO:0044262;cellular carbohydrate metabolic process;0.00678827190020069!GO:0048487;beta-tubulin binding;0.00681753886491248!GO:0006650;glycerophospholipid metabolic process;0.00681753886491248!GO:0000209;protein polyubiquitination;0.00683426157896413!GO:0006506;GPI anchor biosynthetic process;0.00687351036309392!GO:0000049;tRNA binding;0.00701630932955119!GO:0031970;organelle envelope lumen;0.00705383654090479!GO:0000792;heterochromatin;0.00734202380879459!GO:0008637;apoptotic mitochondrial changes;0.00735238583305261!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00745224564756929!GO:0015002;heme-copper terminal oxidase activity;0.00745224564756929!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00745224564756929!GO:0004129;cytochrome-c oxidase activity;0.00745224564756929!GO:0000819;sister chromatid segregation;0.00745224564756929!GO:0000228;nuclear chromosome;0.00745224564756929!GO:0006376;mRNA splice site selection;0.00746198321872684!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00746198321872684!GO:0022411;cellular component disassembly;0.00776311680886947!GO:0005758;mitochondrial intermembrane space;0.00791385361193546!GO:0043189;H4/H2A histone acetyltransferase complex;0.00802427211212519!GO:0030137;COPI-coated vesicle;0.00814015712231185!GO:0031570;DNA integrity checkpoint;0.00819258662720786!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.00819991631659175!GO:0005832;chaperonin-containing T-complex;0.00823219149713763!GO:0048522;positive regulation of cellular process;0.00829073142152123!GO:0042802;identical protein binding;0.00835221091130232!GO:0008287;protein serine/threonine phosphatase complex;0.00841312658012259!GO:0006595;polyamine metabolic process;0.00841684007970805!GO:0003746;translation elongation factor activity;0.0084632290140604!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00859602631505563!GO:0043022;ribosome binding;0.00861583350480738!GO:0043601;nuclear replisome;0.00871727672479557!GO:0030894;replisome;0.00871727672479557!GO:0031577;spindle checkpoint;0.00889051066771954!GO:0008601;protein phosphatase type 2A regulator activity;0.00899224288138975!GO:0009116;nucleoside metabolic process;0.00912666329008451!GO:0006505;GPI anchor metabolic process;0.00912666329008451!GO:0019206;nucleoside kinase activity;0.00913252594819243!GO:0000070;mitotic sister chromatid segregation;0.00914076514285103!GO:0006338;chromatin remodeling;0.00914076514285103!GO:0008139;nuclear localization sequence binding;0.00931250277476869!GO:0006541;glutamine metabolic process;0.00931370318587343!GO:0005669;transcription factor TFIID complex;0.00944363157769851!GO:0032200;telomere organization and biogenesis;0.00960874531276775!GO:0000723;telomere maintenance;0.00960874531276775!GO:0030133;transport vesicle;0.00966359355019587!GO:0000152;nuclear ubiquitin ligase complex;0.00975300912961265!GO:0008408;3'-5' exonuclease activity;0.0100126226162209!GO:0003677;DNA binding;0.0107169744474654!GO:0042158;lipoprotein biosynthetic process;0.0116537835752289!GO:0031529;ruffle organization and biogenesis;0.0116559890567855!GO:0017166;vinculin binding;0.0118793098752213!GO:0043284;biopolymer biosynthetic process;0.0123622403055875!GO:0000323;lytic vacuole;0.0126170786338596!GO:0005764;lysosome;0.0126170786338596!GO:0005875;microtubule associated complex;0.012689749120871!GO:0032774;RNA biosynthetic process;0.0127902304131741!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0132371043730215!GO:0003711;transcription elongation regulator activity;0.0132566811958991!GO:0006144;purine base metabolic process;0.0133586552016013!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0137438584274779!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0137438584274779!GO:0030659;cytoplasmic vesicle membrane;0.0138727699295775!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0138727699295775!GO:0010257;NADH dehydrogenase complex assembly;0.0138727699295775!GO:0033108;mitochondrial respiratory chain complex assembly;0.0138727699295775!GO:0004722;protein serine/threonine phosphatase activity;0.0138835573852364!GO:0040008;regulation of growth;0.0138835573852364!GO:0006520;amino acid metabolic process;0.0139061804506169!GO:0035267;NuA4 histone acetyltransferase complex;0.0141227142765784!GO:0008180;signalosome;0.0141227142765784!GO:0031901;early endosome membrane;0.0143324487368968!GO:0045045;secretory pathway;0.0144239195888798!GO:0005869;dynactin complex;0.0144515290526151!GO:0009303;rRNA transcription;0.0144843940906799!GO:0006351;transcription, DNA-dependent;0.0147160500118467!GO:0009262;deoxyribonucleotide metabolic process;0.0147931258704392!GO:0008286;insulin receptor signaling pathway;0.0148820556416516!GO:0045892;negative regulation of transcription, DNA-dependent;0.0149343344374821!GO:0000159;protein phosphatase type 2A complex;0.0149343344374821!GO:0004532;exoribonuclease activity;0.0149343344374821!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0149343344374821!GO:0030518;steroid hormone receptor signaling pathway;0.0153528831642806!GO:0016584;nucleosome positioning;0.0155324476616212!GO:0046467;membrane lipid biosynthetic process;0.0157734866775216!GO:0030658;transport vesicle membrane;0.0160681220901583!GO:0031123;RNA 3'-end processing;0.0161919942344569!GO:0006378;mRNA polyadenylation;0.0164262026265458!GO:0016408;C-acyltransferase activity;0.0167685330151174!GO:0006672;ceramide metabolic process;0.0168629902392349!GO:0004680;casein kinase activity;0.0171311848746295!GO:0022890;inorganic cation transmembrane transporter activity;0.017242800430489!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0173449523632796!GO:0019752;carboxylic acid metabolic process;0.0180707807705293!GO:0007021;tubulin folding;0.0181189428111746!GO:0065007;biological regulation;0.0181189428111746!GO:0006740;NADPH regeneration;0.0182259688675409!GO:0000123;histone acetyltransferase complex;0.0182259688675409!GO:0006098;pentose-phosphate shunt;0.0182259688675409!GO:0031902;late endosome membrane;0.0184839203878987!GO:0046966;thyroid hormone receptor binding;0.0186435994455561!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0188071096191399!GO:0000339;RNA cap binding;0.0189921499430868!GO:0005791;rough endoplasmic reticulum;0.0192600222008767!GO:0008017;microtubule binding;0.0192675360084473!GO:0016407;acetyltransferase activity;0.0196503723528044!GO:0046519;sphingoid metabolic process;0.0196667846179167!GO:0006082;organic acid metabolic process;0.0197006894732431!GO:0009451;RNA modification;0.0199410285990861!GO:0042393;histone binding;0.0199731868292896!GO:0005663;DNA replication factor C complex;0.0205348480382449!GO:0005652;nuclear lamina;0.0207407726720931!GO:0048037;cofactor binding;0.0213999380242486!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.02184559200669!GO:0006695;cholesterol biosynthetic process;0.0219117932365409!GO:0000781;chromosome, telomeric region;0.0222616386607803!GO:0006367;transcription initiation from RNA polymerase II promoter;0.02268728163983!GO:0007243;protein kinase cascade;0.023023980169598!GO:0004576;oligosaccharyl transferase activity;0.0230310418231766!GO:0043154;negative regulation of caspase activity;0.0231490811920112!GO:0044450;microtubule organizing center part;0.0233276292297173!GO:0007040;lysosome organization and biogenesis;0.0235874347446917!GO:0000726;non-recombinational repair;0.0240703009203158!GO:0030660;Golgi-associated vesicle membrane;0.0244105713689883!GO:0006301;postreplication repair;0.0244551726096308!GO:0030125;clathrin vesicle coat;0.0244570969774463!GO:0030665;clathrin coated vesicle membrane;0.0244570969774463!GO:0046128;purine ribonucleoside metabolic process;0.0245036317012118!GO:0042278;purine nucleoside metabolic process;0.0245036317012118!GO:0008250;oligosaccharyl transferase complex;0.0259157215892391!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0260709670627232!GO:0044433;cytoplasmic vesicle part;0.0261988997099774!GO:0012506;vesicle membrane;0.0263620345439874!GO:0000077;DNA damage checkpoint;0.0264499564838915!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0264605513010432!GO:0009112;nucleobase metabolic process;0.0268719074815282!GO:0030118;clathrin coat;0.0272080669133261!GO:0006458;'de novo' protein folding;0.0280933543931353!GO:0051084;'de novo' posttranslational protein folding;0.0280933543931353!GO:0050681;androgen receptor binding;0.0280933543931353!GO:0051539;4 iron, 4 sulfur cluster binding;0.0280933543931353!GO:0006007;glucose catabolic process;0.0288346012499068!GO:0006360;transcription from RNA polymerase I promoter;0.0290624520972604!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0290624520972604!GO:0007264;small GTPase mediated signal transduction;0.0291466133203269!GO:0033673;negative regulation of kinase activity;0.0305749493605724!GO:0006469;negative regulation of protein kinase activity;0.0305749493605724!GO:0032259;methylation;0.0306946172672938!GO:0008320;protein transmembrane transporter activity;0.030704465308826!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0311744177471164!GO:0005862;muscle thin filament tropomyosin;0.0315379375845154!GO:0050790;regulation of catalytic activity;0.0319555931313006!GO:0000178;exosome (RNase complex);0.0324031170898953!GO:0000084;S phase of mitotic cell cycle;0.0324546769295666!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0326476916750837!GO:0030911;TPR domain binding;0.0326543808325887!GO:0007004;telomere maintenance via telomerase;0.0327885394285483!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0331166470932583!GO:0006509;membrane protein ectodomain proteolysis;0.0332512394774789!GO:0033619;membrane protein proteolysis;0.0332512394774789!GO:0006730;one-carbon compound metabolic process;0.0332512394774789!GO:0005784;translocon complex;0.0335999691536039!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0337396815868856!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0343357910359832!GO:0030384;phosphoinositide metabolic process;0.0343357910359832!GO:0016126;sterol biosynthetic process;0.0345419398605334!GO:0005680;anaphase-promoting complex;0.0346404240098763!GO:0008538;proteasome activator activity;0.034855031313339!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0351478625351918!GO:0016791;phosphoric monoester hydrolase activity;0.0352258125523911!GO:0031625;ubiquitin protein ligase binding;0.0352849007713148!GO:0030140;trans-Golgi network transport vesicle;0.0355579824275642!GO:0031371;ubiquitin conjugating enzyme complex;0.0358960608202262!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0362874735950353!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0362874735950353!GO:0022884;macromolecule transmembrane transporter activity;0.0362874735950353!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0362874735950353!GO:0046983;protein dimerization activity;0.0363542314808167!GO:0008426;protein kinase C inhibitor activity;0.03661403754332!GO:0031396;regulation of protein ubiquitination;0.0366983881098678!GO:0050178;phenylpyruvate tautomerase activity;0.036870552380775!GO:0046483;heterocycle metabolic process;0.0371394096014035!GO:0003887;DNA-directed DNA polymerase activity;0.0377419925630706!GO:0051287;NAD binding;0.0380202791327591!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0386338341539874!GO:0019201;nucleotide kinase activity;0.0389042024176555!GO:0000118;histone deacetylase complex;0.0389042024176555!GO:0045449;regulation of transcription;0.0392614214364983!GO:0001832;blastocyst growth;0.0396201037062092!GO:0004523;ribonuclease H activity;0.0398114545287302!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0399219471594424!GO:0007033;vacuole organization and biogenesis;0.0400415078898575!GO:0051320;S phase;0.0400415078898575!GO:0030145;manganese ion binding;0.0410219564777779!GO:0030522;intracellular receptor-mediated signaling pathway;0.0418733384223451!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0418733384223451!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0419704207172914!GO:0043414;biopolymer methylation;0.0426286431635172!GO:0008097;5S rRNA binding;0.0429621798042074!GO:0006778;porphyrin metabolic process;0.0431490580004316!GO:0033013;tetrapyrrole metabolic process;0.0431490580004316!GO:0031399;regulation of protein modification process;0.0431624896687642!GO:0008276;protein methyltransferase activity;0.0432225266788918!GO:0051348;negative regulation of transferase activity;0.0432225266788918!GO:0008234;cysteine-type peptidase activity;0.0442000193407158!GO:0048146;positive regulation of fibroblast proliferation;0.0450897216669559!GO:0001726;ruffle;0.0451804629823192!GO:0001836;release of cytochrome c from mitochondria;0.0455436287046941!GO:0030508;thiol-disulfide exchange intermediate activity;0.0456383715178413!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0457619241868481!GO:0006400;tRNA modification;0.0457799840400939!GO:0006275;regulation of DNA replication;0.0459346998222073!GO:0030503;regulation of cell redox homeostasis;0.0478211060325512!GO:0005732;small nucleolar ribonucleoprotein complex;0.0478653309851234!GO:0047485;protein N-terminus binding;0.0483469219181777!GO:0009124;nucleoside monophosphate biosynthetic process;0.0495889765890191!GO:0009123;nucleoside monophosphate metabolic process;0.0495889765890191!GO:0051297;centrosome organization and biogenesis;0.0496520294542248!GO:0031023;microtubule organizing center organization and biogenesis;0.0496520294542248 | |||
|sample_id=10708 | |sample_id=10708 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=PAX8:1.64518456319;LEF1_TCF7_TCF7L1,2:1.50395121218;ONECUT1,2:1.47976439114;E2F1..5:1.42454786383;PBX1:1.29812982798;HOX{A6,A7,B6,B7}:1.25397283837;TEF:1.1984755917;PITX1..3:1.1258469987;HSF1,2:1.12214464496;MYB:1.10192495458;bHLH_family:1.08737398384;AIRE:0.972203768671;CDX1,2,4:0.932613993893;EVI1:0.918249752651;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.91650729676;TOPORS:0.900979470353;HOX{A5,B5}:0.869730139511;FOXP1:0.867086322403;ZNF384:0.865832494298;TFDP1:0.863407253794;LHX3,4:0.859667447009;PPARG:0.822369305253;PAX4:0.819642290409;RBPJ:0.805443615555;PDX1:0.802522964614;NFY{A,B,C}:0.698047009815;FOXD3:0.62925893622;CDC5L:0.629022305107;PRRX1,2:0.614726610072;GFI1:0.612135895693;NKX6-1,2:0.609577775235;NRF1:0.588544687193;NKX2-3_NKX2-5:0.587182676193;ADNP_IRX_SIX_ZHX:0.567854490298;FOXM1:0.545573741548;STAT5{A,B}:0.536139831227;POU2F1..3:0.529507273738;RXR{A,B,G}:0.528083735672;EGR1..3:0.491967048005;RFX1:0.48434473499;OCT4_SOX2{dimer}:0.48056404927;ZNF143:0.475255913671;HES1:0.473086513256;POU1F1:0.468725431278;IKZF2:0.435134471597;NR6A1:0.433448501064;ZIC1..3:0.406419877715;FOXQ1:0.372996880763;UFEwm:0.359815208987;TEAD1:0.352534114666;NKX3-1:0.347252339363;FOX{I1,J2}:0.34720384568;DBP:0.34216951937;BREu{core}:0.322796226609;FOS_FOS{B,L1}_JUN{B,D}:0.286329963051;FOX{D1,D2}:0.283530964616;EN1,2:0.282292141214;PAX5:0.270869347236;FOXO1,3,4:0.267529774617;ZFP161:0.240917810469;RFX2..5_RFXANK_RFXAP:0.228548371797;ZBTB16:0.202634492715;CRX:0.187225621296;MTF1:0.145454677033;LMO2:0.139598253708;TP53:0.13945273617;POU6F1:0.136391853185;GATA4:0.132746892241;HNF4A_NR2F1,2:0.117514571983;VSX1,2:0.102891389395;ALX4:0.0865714803369;FOX{F1,F2,J1}:0.0842655861445;POU5F1:0.0791209126054;DMAP1_NCOR{1,2}_SMARC:0.0735476797332;HNF1A:0.0661962505928;REST:0.0496434576816;BACH2:0.0315990525005;NFE2:0.0295746740419;ELK1,4_GABP{A,B1}:0.0253568867025;FOSL2:0.00803831804375;FOXA2:0.00479811733526;GZF1:-0.0171568109588;XCPE1{core}:-0.019991076206;SRF:-0.0261169123268;SOX{8,9,10}:-0.0287732204815;YY1:-0.05439781065;FOXP3:-0.0609810346057;ALX1:-0.0625067932885;FOXL1:-0.068532347525;TFAP2{A,C}:-0.07410429374;NKX2-1,4:-0.0748507677433;ARID5B:-0.0825128288989;SOX2:-0.0840713213661;TLX2:-0.105596557149;HIC1:-0.111021022293;HLF:-0.1291059065;TFAP2B:-0.138139084093;GTF2A1,2:-0.163088848437;IKZF1:-0.163531989158;MTE{core}:-0.179205481835;BPTF:-0.186508004084;MYBL2:-0.187331505945;SP1:-0.209886026724;NFE2L2:-0.218867495165;STAT2,4,6:-0.226527741124;CEBPA,B_DDIT3:-0.230567930558;ZBTB6:-0.233590814998;ATF5_CREB3:-0.238331025025;GCM1,2:-0.240974844237;KLF4:-0.261322819137;ZEB1:-0.264217009611;TAL1_TCF{3,4,12}:-0.266886944464;GTF2I:-0.268817528773;AR:-0.271629550941;NR3C1:-0.277484471299;HBP1_HMGB_SSRP1_UBTF:-0.288320578883;MYOD1:-0.289839202745;RUNX1..3:-0.296585578159;MZF1:-0.297462917932;ESR1:-0.307066438633;TLX1..3_NFIC{dimer}:-0.309284223927;TBX4,5:-0.316412358983;AHR_ARNT_ARNT2:-0.327932233191;CUX2:-0.33085666699;SPIB:-0.33114184585;HOXA9_MEIS1:-0.337762478344;PAX3,7:-0.339475907583;NFE2L1:-0.341875035142;ATF4:-0.345689588672;HOX{A4,D4}:-0.348261623112;MED-1{core}:-0.351040573148;RREB1:-0.36721247928;NFKB1_REL_RELA:-0.415633222324;SNAI1..3:-0.422768501611;NR5A1,2:-0.440520635629;GFI1B:-0.456513206127;PRDM1:-0.462213800379;IRF7:-0.507731582814;RORA:-0.507763039437;NR1H4:-0.513349860518;POU3F1..4:-0.520491555678;NHLH1,2:-0.531815242609;ELF1,2,4:-0.534761359144;SOX17:-0.540805690977;NFIL3:-0.552732034737;PAX2:-0.568600720625;XBP1:-0.571036592034;SOX5:-0.575205160379;GATA6:-0.578175483545;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.582410054184;EP300:-0.584350578793;ATF2:-0.597589014466;NFATC1..3:-0.603953371349;NKX3-2:-0.622730975865;MEF2{A,B,C,D}:-0.655468858059;STAT1,3:-0.675497351786;GLI1..3:-0.682620740796;ETS1,2:-0.687724053376;SPI1:-0.734910546624;EBF1:-0.742438365655;JUN:-0.757177184838;PATZ1:-0.758889629984;TFAP4:-0.770585951253;MAZ:-0.771084993123;RXRA_VDR{dimer}:-0.815101973906;NFIX:-0.81642575775;NKX2-2,8:-0.819151729031;T:-0.820451155132;TBP:-0.828009073625;NANOG{mouse}:-0.828803284095;IRF1,2:-0.860226045094;TFCP2:-0.89214343469;CREB1:-0.895032231;PAX1,9:-0.926793191532;TGIF1:-0.9277195692;MAFB:-0.931201679091;NANOG:-0.933118317913;HAND1,2:-0.958533338458;MYFfamily:-0.962072478502;ZNF423:-1.06149052181;FOXN1:-1.09186724299;HMGA1,2:-1.10409866433;ZNF238:-1.17141466109;SREBF1,2:-1.24141715121;ESRRA:-1.26466460241;ATF6:-1.42097328935;SMAD1..7,9:-1.44725523851;HIF1A:-1.51181959697;ZNF148:-1.53537634206;SPZ1:-1.55330825742;PAX6:-1.7141582357;HMX1:-2.50280428201 | |top_motifs=PAX8:1.64518456319;LEF1_TCF7_TCF7L1,2:1.50395121218;ONECUT1,2:1.47976439114;E2F1..5:1.42454786383;PBX1:1.29812982798;HOX{A6,A7,B6,B7}:1.25397283837;TEF:1.1984755917;PITX1..3:1.1258469987;HSF1,2:1.12214464496;MYB:1.10192495458;bHLH_family:1.08737398384;AIRE:0.972203768671;CDX1,2,4:0.932613993893;EVI1:0.918249752651;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.91650729676;TOPORS:0.900979470353;HOX{A5,B5}:0.869730139511;FOXP1:0.867086322403;ZNF384:0.865832494298;TFDP1:0.863407253794;LHX3,4:0.859667447009;PPARG:0.822369305253;PAX4:0.819642290409;RBPJ:0.805443615555;PDX1:0.802522964614;NFY{A,B,C}:0.698047009815;FOXD3:0.62925893622;CDC5L:0.629022305107;PRRX1,2:0.614726610072;GFI1:0.612135895693;NKX6-1,2:0.609577775235;NRF1:0.588544687193;NKX2-3_NKX2-5:0.587182676193;ADNP_IRX_SIX_ZHX:0.567854490298;FOXM1:0.545573741548;STAT5{A,B}:0.536139831227;POU2F1..3:0.529507273738;RXR{A,B,G}:0.528083735672;EGR1..3:0.491967048005;RFX1:0.48434473499;OCT4_SOX2{dimer}:0.48056404927;ZNF143:0.475255913671;HES1:0.473086513256;POU1F1:0.468725431278;IKZF2:0.435134471597;NR6A1:0.433448501064;ZIC1..3:0.406419877715;FOXQ1:0.372996880763;UFEwm:0.359815208987;TEAD1:0.352534114666;NKX3-1:0.347252339363;FOX{I1,J2}:0.34720384568;DBP:0.34216951937;BREu{core}:0.322796226609;FOS_FOS{B,L1}_JUN{B,D}:0.286329963051;FOX{D1,D2}:0.283530964616;EN1,2:0.282292141214;PAX5:0.270869347236;FOXO1,3,4:0.267529774617;ZFP161:0.240917810469;RFX2..5_RFXANK_RFXAP:0.228548371797;ZBTB16:0.202634492715;CRX:0.187225621296;MTF1:0.145454677033;LMO2:0.139598253708;TP53:0.13945273617;POU6F1:0.136391853185;GATA4:0.132746892241;HNF4A_NR2F1,2:0.117514571983;VSX1,2:0.102891389395;ALX4:0.0865714803369;FOX{F1,F2,J1}:0.0842655861445;POU5F1:0.0791209126054;DMAP1_NCOR{1,2}_SMARC:0.0735476797332;HNF1A:0.0661962505928;REST:0.0496434576816;BACH2:0.0315990525005;NFE2:0.0295746740419;ELK1,4_GABP{A,B1}:0.0253568867025;FOSL2:0.00803831804375;FOXA2:0.00479811733526;GZF1:-0.0171568109588;XCPE1{core}:-0.019991076206;SRF:-0.0261169123268;SOX{8,9,10}:-0.0287732204815;YY1:-0.05439781065;FOXP3:-0.0609810346057;ALX1:-0.0625067932885;FOXL1:-0.068532347525;TFAP2{A,C}:-0.07410429374;NKX2-1,4:-0.0748507677433;ARID5B:-0.0825128288989;SOX2:-0.0840713213661;TLX2:-0.105596557149;HIC1:-0.111021022293;HLF:-0.1291059065;TFAP2B:-0.138139084093;GTF2A1,2:-0.163088848437;IKZF1:-0.163531989158;MTE{core}:-0.179205481835;BPTF:-0.186508004084;MYBL2:-0.187331505945;SP1:-0.209886026724;NFE2L2:-0.218867495165;STAT2,4,6:-0.226527741124;CEBPA,B_DDIT3:-0.230567930558;ZBTB6:-0.233590814998;ATF5_CREB3:-0.238331025025;GCM1,2:-0.240974844237;KLF4:-0.261322819137;ZEB1:-0.264217009611;TAL1_TCF{3,4,12}:-0.266886944464;GTF2I:-0.268817528773;AR:-0.271629550941;NR3C1:-0.277484471299;HBP1_HMGB_SSRP1_UBTF:-0.288320578883;MYOD1:-0.289839202745;RUNX1..3:-0.296585578159;MZF1:-0.297462917932;ESR1:-0.307066438633;TLX1..3_NFIC{dimer}:-0.309284223927;TBX4,5:-0.316412358983;AHR_ARNT_ARNT2:-0.327932233191;CUX2:-0.33085666699;SPIB:-0.33114184585;HOXA9_MEIS1:-0.337762478344;PAX3,7:-0.339475907583;NFE2L1:-0.341875035142;ATF4:-0.345689588672;HOX{A4,D4}:-0.348261623112;MED-1{core}:-0.351040573148;RREB1:-0.36721247928;NFKB1_REL_RELA:-0.415633222324;SNAI1..3:-0.422768501611;NR5A1,2:-0.440520635629;GFI1B:-0.456513206127;PRDM1:-0.462213800379;IRF7:-0.507731582814;RORA:-0.507763039437;NR1H4:-0.513349860518;POU3F1..4:-0.520491555678;NHLH1,2:-0.531815242609;ELF1,2,4:-0.534761359144;SOX17:-0.540805690977;NFIL3:-0.552732034737;PAX2:-0.568600720625;XBP1:-0.571036592034;SOX5:-0.575205160379;GATA6:-0.578175483545;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.582410054184;EP300:-0.584350578793;ATF2:-0.597589014466;NFATC1..3:-0.603953371349;NKX3-2:-0.622730975865;MEF2{A,B,C,D}:-0.655468858059;STAT1,3:-0.675497351786;GLI1..3:-0.682620740796;ETS1,2:-0.687724053376;SPI1:-0.734910546624;EBF1:-0.742438365655;JUN:-0.757177184838;PATZ1:-0.758889629984;TFAP4:-0.770585951253;MAZ:-0.771084993123;RXRA_VDR{dimer}:-0.815101973906;NFIX:-0.81642575775;NKX2-2,8:-0.819151729031;T:-0.820451155132;TBP:-0.828009073625;NANOG{mouse}:-0.828803284095;IRF1,2:-0.860226045094;TFCP2:-0.89214343469;CREB1:-0.895032231;PAX1,9:-0.926793191532;TGIF1:-0.9277195692;MAFB:-0.931201679091;NANOG:-0.933118317913;HAND1,2:-0.958533338458;MYFfamily:-0.962072478502;ZNF423:-1.06149052181;FOXN1:-1.09186724299;HMGA1,2:-1.10409866433;ZNF238:-1.17141466109;SREBF1,2:-1.24141715121;ESRRA:-1.26466460241;ATF6:-1.42097328935;SMAD1..7,9:-1.44725523851;HIF1A:-1.51181959697;ZNF148:-1.53537634206;SPZ1:-1.55330825742;PAX6:-1.7141582357;HMX1:-2.50280428201 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10708-109H6;search_select_hide=table117:FF:10708-109H6 | |||
}} | }} | ||
Latest revision as of 14:34, 3 June 2020
| Name: | alveolar cell carcinoma cell line:SW 1573 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11838 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11838
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11838
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.702 |
| 10 | 10 | 0.943 |
| 100 | 100 | 0.168 |
| 101 | 101 | 0.529 |
| 102 | 102 | 0.754 |
| 103 | 103 | 0.779 |
| 104 | 104 | 0.505 |
| 105 | 105 | 0.832 |
| 106 | 106 | 0.00262 |
| 107 | 107 | 0.258 |
| 108 | 108 | 0.546 |
| 109 | 109 | 0.491 |
| 11 | 11 | 0.796 |
| 110 | 110 | 0.82 |
| 111 | 111 | 0.258 |
| 112 | 112 | 0.331 |
| 113 | 113 | 0.682 |
| 114 | 114 | 0.628 |
| 115 | 115 | 0.849 |
| 116 | 116 | 0.967 |
| 117 | 117 | 0.982 |
| 118 | 118 | 0.519 |
| 119 | 119 | 0.344 |
| 12 | 12 | 0.952 |
| 120 | 120 | 0.0584 |
| 121 | 121 | 0.787 |
| 122 | 122 | 0.589 |
| 123 | 123 | 0.148 |
| 124 | 124 | 0.195 |
| 125 | 125 | 0.223 |
| 126 | 126 | 0.25 |
| 127 | 127 | 0.708 |
| 128 | 128 | 0.0288 |
| 129 | 129 | 0.998 |
| 13 | 13 | 0.719 |
| 130 | 130 | 0.917 |
| 131 | 131 | 0.29 |
| 132 | 132 | 0.322 |
| 133 | 133 | 0.19 |
| 134 | 134 | 0.968 |
| 135 | 135 | 0.0139 |
| 136 | 136 | 0.0808 |
| 137 | 137 | 0.174 |
| 138 | 138 | 0.539 |
| 139 | 139 | 0.629 |
| 14 | 14 | 0.799 |
| 140 | 140 | 0.663 |
| 141 | 141 | 0.801 |
| 142 | 142 | 0.56 |
| 143 | 143 | 0.606 |
| 144 | 144 | 0.949 |
| 145 | 145 | 0.617 |
| 146 | 146 | 0.131 |
| 147 | 147 | 0.229 |
| 148 | 148 | 0.886 |
| 149 | 149 | 0.0649 |
| 15 | 15 | 0.352 |
| 150 | 150 | 0.973 |
| 151 | 151 | 0.811 |
| 152 | 152 | 0.342 |
| 153 | 153 | 0.106 |
| 154 | 154 | 0.51 |
| 155 | 155 | 0.664 |
| 156 | 156 | 0.491 |
| 157 | 157 | 0.624 |
| 158 | 158 | 0.407 |
| 159 | 159 | 0.307 |
| 16 | 16 | 0.858 |
| 160 | 160 | 0.916 |
| 161 | 161 | 0.274 |
| 162 | 162 | 0.858 |
| 163 | 163 | 0.115 |
| 164 | 164 | 0.331 |
| 165 | 165 | 0.995 |
| 166 | 166 | 0.454 |
| 167 | 167 | 0.0391 |
| 168 | 168 | 0.0713 |
| 169 | 169 | 0.932 |
| 17 | 17 | 0.88 |
| 18 | 18 | 0.256 |
| 19 | 19 | 0.691 |
| 2 | 2 | 0.432 |
| 20 | 20 | 0.0646 |
| 21 | 21 | 0.06 |
| 22 | 22 | 0.261 |
| 23 | 23 | 0.0603 |
| 24 | 24 | 0.515 |
| 25 | 25 | 0.733 |
| 26 | 26 | 0.148 |
| 27 | 27 | 0.28 |
| 28 | 28 | 0.682 |
| 29 | 29 | 0.609 |
| 3 | 3 | 0.662 |
| 30 | 30 | 0.222 |
| 31 | 31 | 0.207 |
| 32 | 32 | 0.0168 |
| 33 | 33 | 0.642 |
| 34 | 34 | 0.14 |
| 35 | 35 | 0.909 |
| 36 | 36 | 0.949 |
| 37 | 37 | 0.291 |
| 38 | 38 | 0.471 |
| 39 | 39 | 0.807 |
| 4 | 4 | 0.325 |
| 40 | 40 | 0.269 |
| 41 | 41 | 0.277 |
| 42 | 42 | 0.397 |
| 43 | 43 | 0.223 |
| 44 | 44 | 0.107 |
| 45 | 45 | 0.0153 |
| 46 | 46 | 0.821 |
| 47 | 47 | 0.619 |
| 48 | 48 | 0.717 |
| 49 | 49 | 0.363 |
| 5 | 5 | 0.0516 |
| 50 | 50 | 0.932 |
| 51 | 51 | 0.798 |
| 52 | 52 | 0.0285 |
| 53 | 53 | 0.844 |
| 54 | 54 | 0.92 |
| 55 | 55 | 0.903 |
| 56 | 56 | 0.858 |
| 57 | 57 | 0.13 |
| 58 | 58 | 0.226 |
| 59 | 59 | 0.432 |
| 6 | 6 | 0.221 |
| 60 | 60 | 0.0442 |
| 61 | 61 | 0.914 |
| 62 | 62 | 0.396 |
| 63 | 63 | 0.944 |
| 64 | 64 | 0.724 |
| 65 | 65 | 0.113 |
| 66 | 66 | 0.16 |
| 67 | 67 | 0.828 |
| 68 | 68 | 0.902 |
| 69 | 69 | 0.643 |
| 7 | 7 | 0.725 |
| 70 | 70 | 0.248 |
| 71 | 71 | 0.934 |
| 72 | 72 | 0.0027 |
| 73 | 73 | 0.478 |
| 74 | 74 | 0.409 |
| 75 | 75 | 0.663 |
| 76 | 76 | 0.915 |
| 77 | 77 | 0.119 |
| 78 | 78 | 0.437 |
| 79 | 79 | 0.2 |
| 8 | 8 | 0.172 |
| 80 | 80 | 0.525 |
| 81 | 81 | 0.605 |
| 82 | 82 | 0.352 |
| 83 | 83 | 0.805 |
| 84 | 84 | 0.152 |
| 85 | 85 | 0.0555 |
| 86 | 86 | 0.414 |
| 87 | 87 | 0.955 |
| 88 | 88 | 0.599 |
| 89 | 89 | 0.0595 |
| 9 | 9 | 0.217 |
| 90 | 90 | 0.267 |
| 91 | 91 | 0.034 |
| 92 | 92 | 0.249 |
| 93 | 93 | 0.362 |
| 94 | 94 | 0.245 |
| 95 | 95 | 0.873 |
| 96 | 96 | 0.984 |
| 97 | 97 | 0.447 |
| 98 | 98 | 0.755 |
| 99 | 99 | 0.24 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11838
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102060 bronchioalveolar carcinoma cell sample
FF:0104802 bronchioloalveolar carcinoma cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0000322 (pneumocyte)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1325 (bronchus cancer)
3905 (lung carcinoma)
3908 (non-small cell lung carcinoma)
3910 (lung adenocarcinoma)
3904 (bronchogenic carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0004821 (pulmonary alveolus epithelium)
0004903 (bronchoalveolar duct junction)
0000479 (tissue)
0000058 (duct)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0003914 (epithelial tube)
0007499 (epithelial sac)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000487 (simple squamous epithelium)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0003215 (alveolus)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0009856 (sac)
0010368 (pulmonary lobule)
0009911 (lobule)
0002299 (alveolus of lung)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
0006524 (alveolar system)
0008874 (pulmonary acinus)
0002169 (alveolar sac)
0004894 (alveolar wall)
0002173 (alveolar duct)
0002186 (bronchiole)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0102061 (bronchogenic carcinoma cell sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102058 (non-small cell lung cancer cell sample)
0102057 (lung adenocarcinoma cell sample)
0102060 (bronchioalveolar carcinoma cell sample)
0104802 (bronchioloalveolar carcinoma cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
