FF:11310-117C5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004810 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004810 | ||
|accession_numbers=CAGE;DRX008130;DRR009002;DRZ000427;DRZ001812;DRZ011777;DRZ013162 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037137;DRR041503;DRZ007145 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000763,CL:0002320,CL:0000066,CL:0002371,CL:0000213,CL:0000766,CL:0002078,CL:0000219,CL:0000215,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0000034,CL:0000576,CL:0000115,CL:0000566,CL:0002619 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000248 | |||
|comment=Previously Endothelial Progenitor Cells, donor2 | |comment=Previously Endothelial Progenitor Cells, donor2 | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor2.CNhs11897.11310-117C5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor2.CNhs11897.11310-117C5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor2.CNhs11897.11310-117C5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor2.CNhs11897.11310-117C5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor2.CNhs11897.11310-117C5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11310-117C5 | |id=FF:11310-117C5 | ||
|is_a=CL:0000576;;EFO:0002091;;FF: | |is_a=CL:0000576;;EFO:0002091;;FF:0000248 | ||
|is_obsolete= | |||
|library_id=CNhs11897 | |||
|library_id_phase_based=2:CNhs11897 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11310 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.AGTCAA.11310 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11310 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.AGTCAA.11310 | |||
|name=CD14+ monocyte derived endothelial progenitor cells, donor2 | |name=CD14+ monocyte derived endothelial progenitor cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11897,LSID834,release010,COMPLETED | |profile_hcage=CNhs11897,LSID834,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10009,,, | |profile_srnaseq=SRhi10009,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=3H100-81-10 | |rna_catalog_number=3H100-81-10 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117C5 | |rna_tube_id=117C5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10009.AGTCAA | |||
|sample_age=57 | |sample_age=57 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.67045094819553e-242!GO:0005737;cytoplasm;1.13224010210225e-148!GO:0043227;membrane-bound organelle;1.43971376878977e-147!GO:0043231;intracellular membrane-bound organelle;2.93855826568952e-147!GO:0043226;organelle;1.69678699560872e-129!GO:0043229;intracellular organelle;6.27500708154691e-129!GO:0044444;cytoplasmic part;4.42364099660513e-114!GO:0044422;organelle part;3.71424120301344e-94!GO:0044446;intracellular organelle part;1.71231927785091e-92!GO:0044237;cellular metabolic process;8.56617204974581e-74!GO:0044238;primary metabolic process;1.3390823919094e-71!GO:0032991;macromolecular complex;2.26772179334208e-66!GO:0043170;macromolecule metabolic process;4.86400328393289e-65!GO:0003723;RNA binding;9.09730581411006e-54!GO:0044428;nuclear part;1.02752826275949e-52!GO:0030529;ribonucleoprotein complex;1.05718318910118e-51!GO:0043233;organelle lumen;1.73415478042062e-51!GO:0031974;membrane-enclosed lumen;1.73415478042062e-51!GO:0005515;protein binding;4.03682925676872e-51!GO:0005739;mitochondrion;3.87755119659472e-50!GO:0031090;organelle membrane;8.28374118215593e-49!GO:0033036;macromolecule localization;8.21375855069388e-48!GO:0015031;protein transport;5.19168886063078e-47!GO:0019538;protein metabolic process;1.27732185103584e-46!GO:0005634;nucleus;1.95642182456559e-46!GO:0045184;establishment of protein localization;7.93528751154974e-46!GO:0008104;protein localization;1.7663750345732e-44!GO:0044260;cellular macromolecule metabolic process;1.93311007422946e-42!GO:0044267;cellular protein metabolic process;9.68371193432438e-42!GO:0044429;mitochondrial part;1.50085373591791e-36!GO:0006412;translation;2.00586729938171e-36!GO:0043234;protein complex;4.77418324479913e-35!GO:0031967;organelle envelope;9.3746165495413e-35!GO:0031975;envelope;2.07408853181579e-34!GO:0006396;RNA processing;4.69722236303654e-34!GO:0043283;biopolymer metabolic process;7.122852783034e-33!GO:0016071;mRNA metabolic process;2.98284668818775e-32!GO:0031981;nuclear lumen;6.39057690395825e-32!GO:0046907;intracellular transport;1.5675001309771e-31!GO:0009058;biosynthetic process;2.22283606808466e-31!GO:0009059;macromolecule biosynthetic process;2.79015452961581e-30!GO:0006886;intracellular protein transport;2.97247179766192e-30!GO:0005829;cytosol;3.38724068798384e-30!GO:0008380;RNA splicing;3.2098619984563e-28!GO:0005840;ribosome;1.74540424890403e-27!GO:0044249;cellular biosynthetic process;4.07505540663449e-27!GO:0006397;mRNA processing;6.07300796163995e-27!GO:0010467;gene expression;1.10161394789058e-26!GO:0016043;cellular component organization and biogenesis;7.01898547917355e-26!GO:0005740;mitochondrial envelope;3.6800597939668e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.33477296130019e-24!GO:0051649;establishment of cellular localization;3.54487057616414e-24!GO:0065003;macromolecular complex assembly;5.52453941623783e-24!GO:0031966;mitochondrial membrane;5.72240279127698e-24!GO:0051641;cellular localization;5.80760485810768e-24!GO:0003735;structural constituent of ribosome;3.24794527252052e-23!GO:0005773;vacuole;3.41165070396382e-23!GO:0019866;organelle inner membrane;6.93015055012597e-23!GO:0006119;oxidative phosphorylation;1.01748781101179e-22!GO:0005654;nucleoplasm;5.79697427680818e-22!GO:0033279;ribosomal subunit;1.28948792011043e-21!GO:0000323;lytic vacuole;1.31701093944045e-21!GO:0005764;lysosome;1.31701093944045e-21!GO:0005743;mitochondrial inner membrane;4.02734955172334e-21!GO:0005681;spliceosome;1.09115480984473e-20!GO:0022607;cellular component assembly;3.24632388553988e-20!GO:0044265;cellular macromolecule catabolic process;1.29369772159485e-19!GO:0048770;pigment granule;4.14277333267909e-19!GO:0042470;melanosome;4.14277333267909e-19!GO:0006915;apoptosis;6.85654439335684e-19!GO:0012501;programmed cell death;8.41550250461628e-19!GO:0044248;cellular catabolic process;2.8912339743524e-18!GO:0012505;endomembrane system;3.86242825664266e-18!GO:0006512;ubiquitin cycle;4.799004158141e-18!GO:0016192;vesicle-mediated transport;5.89772057746632e-18!GO:0008219;cell death;6.90836154613709e-18!GO:0016265;death;6.90836154613709e-18!GO:0043285;biopolymer catabolic process;8.73496814492491e-18!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.10317070174129e-17!GO:0044451;nucleoplasm part;2.31412446900435e-17!GO:0000166;nucleotide binding;3.47880737029057e-17!GO:0051186;cofactor metabolic process;8.82765130051938e-17!GO:0009057;macromolecule catabolic process;1.62030056994364e-16!GO:0044455;mitochondrial membrane part;2.48908749775482e-16!GO:0016874;ligase activity;3.96208971191506e-16!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.01607360986794e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;4.80127588050131e-16!GO:0044257;cellular protein catabolic process;6.27549185572369e-16!GO:0019941;modification-dependent protein catabolic process;8.91129597607426e-16!GO:0043632;modification-dependent macromolecule catabolic process;8.91129597607426e-16!GO:0006511;ubiquitin-dependent protein catabolic process;9.70589914315566e-16!GO:0006605;protein targeting;1.87959442446435e-15!GO:0008134;transcription factor binding;2.28049527031581e-15!GO:0005794;Golgi apparatus;2.79098273754399e-15!GO:0006259;DNA metabolic process;3.39705862277313e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.9450854972513e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;6.78442076426229e-15!GO:0016462;pyrophosphatase activity;6.98954504158303e-15!GO:0006996;organelle organization and biogenesis;1.05957781446063e-14!GO:0043412;biopolymer modification;1.45960608053779e-14!GO:0022618;protein-RNA complex assembly;1.72699905756641e-14!GO:0044445;cytosolic part;2.2087568286508e-14!GO:0005746;mitochondrial respiratory chain;2.93248448891282e-14!GO:0006457;protein folding;3.22896894104903e-14!GO:0031980;mitochondrial lumen;3.56015996624338e-14!GO:0005759;mitochondrial matrix;3.56015996624338e-14!GO:0017111;nucleoside-triphosphatase activity;4.15015049370801e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.57241954035389e-14!GO:0005783;endoplasmic reticulum;4.62473610328526e-14!GO:0006732;coenzyme metabolic process;6.68852989364944e-14!GO:0030163;protein catabolic process;1.24755679624668e-13!GO:0003676;nucleic acid binding;2.07871632352733e-13!GO:0006464;protein modification process;3.91265657291974e-13!GO:0005768;endosome;4.3145500869371e-13!GO:0000502;proteasome complex (sensu Eukaryota);4.39694154232643e-13!GO:0016604;nuclear body;6.55544153222667e-13!GO:0050136;NADH dehydrogenase (quinone) activity;7.17010260189478e-13!GO:0003954;NADH dehydrogenase activity;7.17010260189478e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.17010260189478e-13!GO:0006913;nucleocytoplasmic transport;1.34679218603541e-12!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.43323877322792e-12!GO:0032553;ribonucleotide binding;1.86899538963214e-12!GO:0032555;purine ribonucleotide binding;1.86899538963214e-12!GO:0048193;Golgi vesicle transport;2.06711766969957e-12!GO:0051169;nuclear transport;2.71293296890872e-12!GO:0042981;regulation of apoptosis;3.92138341618015e-12!GO:0017076;purine nucleotide binding;3.94592668709828e-12!GO:0009056;catabolic process;7.28078441554099e-12!GO:0043067;regulation of programmed cell death;7.28078441554099e-12!GO:0043687;post-translational protein modification;1.02665571244092e-11!GO:0044432;endoplasmic reticulum part;1.17331081951101e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.25014368374315e-11!GO:0015935;small ribosomal subunit;1.42497924119549e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.633741621678e-11!GO:0042773;ATP synthesis coupled electron transport;1.633741621678e-11!GO:0030964;NADH dehydrogenase complex (quinone);3.11526217008475e-11!GO:0045271;respiratory chain complex I;3.11526217008475e-11!GO:0005747;mitochondrial respiratory chain complex I;3.11526217008475e-11!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.2069021755624e-11!GO:0019829;cation-transporting ATPase activity;3.33510588091337e-11!GO:0016070;RNA metabolic process;3.33510588091337e-11!GO:0016787;hydrolase activity;4.15840059479476e-11!GO:0015934;large ribosomal subunit;5.56776983819215e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.27918138681564e-11!GO:0016607;nuclear speck;1.62968424615642e-10!GO:0015986;ATP synthesis coupled proton transport;1.709738492225e-10!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.709738492225e-10!GO:0005730;nucleolus;1.74867214396961e-10!GO:0008135;translation factor activity, nucleic acid binding;1.85491542095865e-10!GO:0016887;ATPase activity;2.63618081752012e-10!GO:0042623;ATPase activity, coupled;2.63618081752012e-10!GO:0005774;vacuolar membrane;2.75764700835392e-10!GO:0005635;nuclear envelope;3.21198246434625e-10!GO:0005524;ATP binding;3.31532393530795e-10!GO:0008639;small protein conjugating enzyme activity;3.84616597233036e-10!GO:0032559;adenyl ribonucleotide binding;4.35394343107897e-10!GO:0051188;cofactor biosynthetic process;4.54790028526524e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.57639123583702e-10!GO:0015078;hydrogen ion transmembrane transporter activity;4.84440844015184e-10!GO:0006446;regulation of translational initiation;5.67036846283336e-10!GO:0004842;ubiquitin-protein ligase activity;8.37489916780313e-10!GO:0005770;late endosome;8.83407035056644e-10!GO:0007243;protein kinase cascade;1.15485893905253e-09!GO:0030554;adenyl nucleotide binding;1.16830566902433e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.5793421171696e-09!GO:0000375;RNA splicing, via transesterification reactions;1.5793421171696e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.5793421171696e-09!GO:0009150;purine ribonucleotide metabolic process;1.75195088616098e-09!GO:0009259;ribonucleotide metabolic process;1.76098251103079e-09!GO:0019787;small conjugating protein ligase activity;1.76098251103079e-09!GO:0006461;protein complex assembly;1.82422150352893e-09!GO:0051246;regulation of protein metabolic process;1.90294525058094e-09!GO:0009055;electron carrier activity;2.07944252330366e-09!GO:0044437;vacuolar part;2.13932996206828e-09!GO:0006163;purine nucleotide metabolic process;2.13932996206828e-09!GO:0051082;unfolded protein binding;2.25829308974247e-09!GO:0006413;translational initiation;2.4659291418374e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.78569929676513e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.78619179717918e-09!GO:0006754;ATP biosynthetic process;3.27193707535313e-09!GO:0006753;nucleoside phosphate metabolic process;3.27193707535313e-09!GO:0016469;proton-transporting two-sector ATPase complex;3.59978036326688e-09!GO:0006164;purine nucleotide biosynthetic process;3.79658914106359e-09!GO:0017038;protein import;4.00361690462016e-09!GO:0005789;endoplasmic reticulum membrane;4.0988220770052e-09!GO:0005765;lysosomal membrane;4.65713038440131e-09!GO:0009260;ribonucleotide biosynthetic process;7.08828538325808e-09!GO:0005761;mitochondrial ribosome;8.35751742725423e-09!GO:0000313;organellar ribosome;8.35751742725423e-09!GO:0006974;response to DNA damage stimulus;8.8505929751354e-09!GO:0003743;translation initiation factor activity;9.42928545018442e-09!GO:0046034;ATP metabolic process;1.0626474831654e-08!GO:0009108;coenzyme biosynthetic process;1.13360107716681e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.20750294912565e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.20750294912565e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.26366203376376e-08!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.27140244766005e-08!GO:0008565;protein transporter activity;1.32681071296088e-08!GO:0044440;endosomal part;1.36842898242983e-08!GO:0010008;endosome membrane;1.36842898242983e-08!GO:0003712;transcription cofactor activity;1.63836958901881e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.88167117268817e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.88167117268817e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.11253325034994e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.11253325034994e-08!GO:0005793;ER-Golgi intermediate compartment;2.23490027976444e-08!GO:0043069;negative regulation of programmed cell death;2.44226247867994e-08!GO:0006916;anti-apoptosis;2.62487070479365e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.02457809382448e-08!GO:0043066;negative regulation of apoptosis;3.05028375393651e-08!GO:0006793;phosphorus metabolic process;3.71222826562347e-08!GO:0006796;phosphate metabolic process;3.71222826562347e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.09272139193375e-08!GO:0031965;nuclear membrane;5.28409920754147e-08!GO:0016881;acid-amino acid ligase activity;5.94745287588316e-08!GO:0009060;aerobic respiration;6.47143349992415e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.65269795238611e-08!GO:0009141;nucleoside triphosphate metabolic process;7.43088708332186e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.69536948286129e-08!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.03485705758016e-07!GO:0002376;immune system process;1.07532202454806e-07!GO:0031982;vesicle;1.10136187244378e-07!GO:0006950;response to stress;1.45859060818249e-07!GO:0016310;phosphorylation;1.81446429845277e-07!GO:0050794;regulation of cellular process;1.81585120407468e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.86921064909231e-07!GO:0044453;nuclear membrane part;2.21286275901964e-07!GO:0051170;nuclear import;2.36250903597511e-07!GO:0007242;intracellular signaling cascade;2.4579214678529e-07!GO:0043228;non-membrane-bound organelle;2.98660847995542e-07!GO:0043232;intracellular non-membrane-bound organelle;2.98660847995542e-07!GO:0004386;helicase activity;3.00352733391318e-07!GO:0045333;cellular respiration;3.27499873125236e-07!GO:0006606;protein import into nucleus;3.90483114224051e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.18510138612275e-07!GO:0031410;cytoplasmic vesicle;5.46933507852452e-07!GO:0050657;nucleic acid transport;6.15572497104941e-07!GO:0051236;establishment of RNA localization;6.15572497104941e-07!GO:0050658;RNA transport;6.15572497104941e-07!GO:0005839;proteasome core complex (sensu Eukaryota);6.92168374828767e-07!GO:0030120;vesicle coat;7.04409273610901e-07!GO:0030662;coated vesicle membrane;7.04409273610901e-07!GO:0006403;RNA localization;8.19642961290931e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;8.95735671242177e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.04812618679772e-06!GO:0006281;DNA repair;1.101121673616e-06!GO:0048523;negative regulation of cellular process;1.14973318145887e-06!GO:0019899;enzyme binding;1.35574656321595e-06!GO:0048475;coated membrane;1.43892408690613e-06!GO:0030117;membrane coat;1.43892408690613e-06!GO:0016568;chromatin modification;1.59934757016494e-06!GO:0006417;regulation of translation;1.60800552393644e-06!GO:0065009;regulation of a molecular function;1.64537122454987e-06!GO:0006099;tricarboxylic acid cycle;1.81210279982629e-06!GO:0046356;acetyl-CoA catabolic process;1.81210279982629e-06!GO:0008654;phospholipid biosynthetic process;1.87431997886408e-06!GO:0008026;ATP-dependent helicase activity;1.91814139376926e-06!GO:0007049;cell cycle;2.04780453077199e-06!GO:0005643;nuclear pore;2.07785252104638e-06!GO:0006752;group transfer coenzyme metabolic process;2.11569792452053e-06!GO:0044431;Golgi apparatus part;2.18307250623021e-06!GO:0032446;protein modification by small protein conjugation;2.29705999332409e-06!GO:0000151;ubiquitin ligase complex;2.43724892460116e-06!GO:0009615;response to virus;3.45908147231244e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;3.54066326087644e-06!GO:0031988;membrane-bound vesicle;3.57159945651417e-06!GO:0051187;cofactor catabolic process;3.68525897514225e-06!GO:0004298;threonine endopeptidase activity;3.91540782388607e-06!GO:0008047;enzyme activator activity;4.07320144998423e-06!GO:0016567;protein ubiquitination;4.09834974151834e-06!GO:0031902;late endosome membrane;4.12458440679109e-06!GO:0043566;structure-specific DNA binding;5.23970978453892e-06!GO:0007040;lysosome organization and biogenesis;5.28012596715092e-06!GO:0031252;leading edge;5.35203780328739e-06!GO:0003697;single-stranded DNA binding;5.38193293956054e-06!GO:0006084;acetyl-CoA metabolic process;5.51421967695183e-06!GO:0007264;small GTPase mediated signal transduction;6.92196326789204e-06!GO:0006955;immune response;7.86919079653971e-06!GO:0045259;proton-transporting ATP synthase complex;7.96229141788954e-06!GO:0065002;intracellular protein transport across a membrane;7.96229141788954e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;7.96229141788954e-06!GO:0015399;primary active transmembrane transporter activity;7.96229141788954e-06!GO:0006323;DNA packaging;9.08625983828982e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.23820121730736e-06!GO:0046930;pore complex;1.02352825937116e-05!GO:0022890;inorganic cation transmembrane transporter activity;1.02560946843285e-05!GO:0016740;transferase activity;1.03998319679589e-05!GO:0009719;response to endogenous stimulus;1.0581176272491e-05!GO:0048519;negative regulation of biological process;1.10872081447298e-05!GO:0006818;hydrogen transport;1.11361261063477e-05!GO:0051276;chromosome organization and biogenesis;1.1440537837728e-05!GO:0009117;nucleotide metabolic process;1.21141578812256e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.2257023397577e-05!GO:0005798;Golgi-associated vesicle;1.22750194615464e-05!GO:0003713;transcription coactivator activity;1.36248354797887e-05!GO:0016044;membrane organization and biogenesis;1.37593773585749e-05!GO:0005096;GTPase activator activity;1.41130359735939e-05!GO:0051028;mRNA transport;1.44347854215254e-05!GO:0009109;coenzyme catabolic process;1.46247039243916e-05!GO:0007033;vacuole organization and biogenesis;1.71814801866755e-05!GO:0043065;positive regulation of apoptosis;1.73700547470296e-05!GO:0007005;mitochondrion organization and biogenesis;1.8065508012335e-05!GO:0015992;proton transport;1.82224728696216e-05!GO:0006613;cotranslational protein targeting to membrane;1.9165649876457e-05!GO:0050789;regulation of biological process;2.01399201938129e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.09153761163405e-05!GO:0031326;regulation of cellular biosynthetic process;2.19520268294689e-05!GO:0043068;positive regulation of programmed cell death;2.60358244652313e-05!GO:0043492;ATPase activity, coupled to movement of substances;2.7689776642479e-05!GO:0006399;tRNA metabolic process;2.78567261066415e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.08278777719049e-05!GO:0004812;aminoacyl-tRNA ligase activity;3.08278777719049e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.08278777719049e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;3.47965869660447e-05!GO:0006917;induction of apoptosis;3.56893800003847e-05!GO:0005769;early endosome;4.15396117512609e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;4.2477684597427e-05!GO:0006643;membrane lipid metabolic process;4.30190678014262e-05!GO:0043038;amino acid activation;4.57828121369514e-05!GO:0006418;tRNA aminoacylation for protein translation;4.57828121369514e-05!GO:0043039;tRNA aminoacylation;4.57828121369514e-05!GO:0016491;oxidoreductase activity;4.83737301636185e-05!GO:0006366;transcription from RNA polymerase II promoter;4.98404697934517e-05!GO:0012502;induction of programmed cell death;5.35742631488081e-05!GO:0051726;regulation of cell cycle;5.49669020405244e-05!GO:0009889;regulation of biosynthetic process;5.49669020405244e-05!GO:0030695;GTPase regulator activity;5.79195712331859e-05!GO:0007265;Ras protein signal transduction;6.1178590230299e-05!GO:0006672;ceramide metabolic process;6.15251916340584e-05!GO:0000074;regulation of progression through cell cycle;6.39626497792076e-05!GO:0042254;ribosome biogenesis and assembly;6.95904322012145e-05!GO:0006401;RNA catabolic process;6.9716405328367e-05!GO:0030532;small nuclear ribonucleoprotein complex;6.99164918793155e-05!GO:0000245;spliceosome assembly;7.06341407806279e-05!GO:0000139;Golgi membrane;7.37325075597257e-05!GO:0032940;secretion by cell;8.86332085206296e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.51551245091593e-05!GO:0007034;vacuolar transport;0.000102020085129805!GO:0043087;regulation of GTPase activity;0.000102020085129805!GO:0006091;generation of precursor metabolites and energy;0.000111360291190232!GO:0008234;cysteine-type peptidase activity;0.000129659630824809!GO:0009967;positive regulation of signal transduction;0.000132208972074681!GO:0016197;endosome transport;0.000135648418161024!GO:0043623;cellular protein complex assembly;0.000146389292444801!GO:0046519;sphingoid metabolic process;0.0001475668773027!GO:0051168;nuclear export;0.000153349460922126!GO:0005525;GTP binding;0.00016747319630879!GO:0006612;protein targeting to membrane;0.000168087654785055!GO:0016564;transcription repressor activity;0.000168087654785055!GO:0045786;negative regulation of progression through cell cycle;0.000169480054283067!GO:0006650;glycerophospholipid metabolic process;0.000185151198756041!GO:0045045;secretory pathway;0.000185978598927953!GO:0003724;RNA helicase activity;0.000192124888625211!GO:0005885;Arp2/3 protein complex;0.000199691613001315!GO:0051336;regulation of hydrolase activity;0.000217834200234998!GO:0048522;positive regulation of cellular process;0.000231909322643292!GO:0044262;cellular carbohydrate metabolic process;0.000240785316426594!GO:0005083;small GTPase regulator activity;0.000257966490282006!GO:0046467;membrane lipid biosynthetic process;0.000258064089814616!GO:0008632;apoptotic program;0.000258426203008358!GO:0016779;nucleotidyltransferase activity;0.000259769022552778!GO:0001726;ruffle;0.000259812854131046!GO:0050790;regulation of catalytic activity;0.000339694274592241!GO:0046474;glycerophospholipid biosynthetic process;0.000367829039238102!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000374651978887629!GO:0016563;transcription activator activity;0.00038777553331312!GO:0005813;centrosome;0.000430211673159373!GO:0005694;chromosome;0.0004711101943777!GO:0022402;cell cycle process;0.000476136096141084!GO:0006402;mRNA catabolic process;0.000594007009450662!GO:0051427;hormone receptor binding;0.000643624623953575!GO:0048518;positive regulation of biological process;0.000785431090849605!GO:0032318;regulation of Ras GTPase activity;0.000834496263129205!GO:0006644;phospholipid metabolic process;0.000834736483871207!GO:0005741;mitochondrial outer membrane;0.000850351115641934!GO:0030384;phosphoinositide metabolic process;0.000886959607902675!GO:0033116;ER-Golgi intermediate compartment membrane;0.000902487664340045!GO:0030149;sphingolipid catabolic process;0.000929913778398461!GO:0019867;outer membrane;0.000952774808618548!GO:0009165;nucleotide biosynthetic process;0.000955991494357333!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000971062045714762!GO:0019222;regulation of metabolic process;0.000988198633187864!GO:0045454;cell redox homeostasis;0.000995604344875875!GO:0030027;lamellipodium;0.00101397595501014!GO:0003924;GTPase activity;0.00107122620467279!GO:0019377;glycolipid catabolic process;0.00108106503409549!GO:0035257;nuclear hormone receptor binding;0.00109108284857178!GO:0065007;biological regulation;0.00116569359975971!GO:0044255;cellular lipid metabolic process;0.00116862668229513!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00118002483625649!GO:0005099;Ras GTPase activator activity;0.00121368066949685!GO:0006607;NLS-bearing substrate import into nucleus;0.00123850301634458!GO:0007041;lysosomal transport;0.00136639558407227!GO:0006333;chromatin assembly or disassembly;0.00136714688791339!GO:0031968;organelle outer membrane;0.00136936706399159!GO:0003729;mRNA binding;0.00141016845179817!GO:0032561;guanyl ribonucleotide binding;0.00144162016480388!GO:0019001;guanyl nucleotide binding;0.00144162016480388!GO:0043021;ribonucleoprotein binding;0.0014444744221001!GO:0016853;isomerase activity;0.00147097011891247!GO:0005815;microtubule organizing center;0.00150541764469227!GO:0016072;rRNA metabolic process;0.00150568472678424!GO:0031324;negative regulation of cellular metabolic process;0.00154925182914731!GO:0004197;cysteine-type endopeptidase activity;0.00156112642110997!GO:0030658;transport vesicle membrane;0.0016445417529521!GO:0006364;rRNA processing;0.00169881823861401!GO:0006310;DNA recombination;0.00171397405724801!GO:0003690;double-stranded DNA binding;0.00171657825260722!GO:0006260;DNA replication;0.00172084039218007!GO:0005788;endoplasmic reticulum lumen;0.00176695554720989!GO:0015980;energy derivation by oxidation of organic compounds;0.00176695554720989!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0018051355816506!GO:0006897;endocytosis;0.00181096982729073!GO:0010324;membrane invagination;0.00181096982729073!GO:0008186;RNA-dependent ATPase activity;0.0019271358265314!GO:0046489;phosphoinositide biosynthetic process;0.00197453984703552!GO:0044427;chromosomal part;0.00200595136594295!GO:0003714;transcription corepressor activity;0.00205358663614386!GO:0046822;regulation of nucleocytoplasmic transport;0.00231993724647093!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00231993724647093!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00231993724647093!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00231993724647093!GO:0005762;mitochondrial large ribosomal subunit;0.00231993724647093!GO:0000315;organellar large ribosomal subunit;0.00231993724647093!GO:0065004;protein-DNA complex assembly;0.00249353149897868!GO:0030133;transport vesicle;0.00278898319741917!GO:0022415;viral reproductive process;0.00288653934406101!GO:0030176;integral to endoplasmic reticulum membrane;0.00288653934406101!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.00292763173371173!GO:0030134;ER to Golgi transport vesicle;0.00294522423538975!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0029893838715483!GO:0005975;carbohydrate metabolic process;0.00301197115184765!GO:0004177;aminopeptidase activity;0.00309836444436162!GO:0048471;perinuclear region of cytoplasm;0.00318435628008282!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00332137803880742!GO:0046483;heterocycle metabolic process;0.00367247545266009!GO:0016363;nuclear matrix;0.00369710641171251!GO:0046479;glycosphingolipid catabolic process;0.00383190856120394!GO:0006891;intra-Golgi vesicle-mediated transport;0.00402570922918007!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0041460967024419!GO:0030660;Golgi-associated vesicle membrane;0.00469540232562327!GO:0030867;rough endoplasmic reticulum membrane;0.00470666923547521!GO:0030127;COPII vesicle coat;0.00474586987033996!GO:0012507;ER to Golgi transport vesicle membrane;0.00474586987033996!GO:0045321;leukocyte activation;0.00489126942689838!GO:0000785;chromatin;0.00499423682682997!GO:0004004;ATP-dependent RNA helicase activity;0.00516155027378087!GO:0009892;negative regulation of metabolic process;0.00519518533297287!GO:0031072;heat shock protein binding;0.00533743327196963!GO:0030118;clathrin coat;0.00533862478377497!GO:0048500;signal recognition particle;0.00551712730207481!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00554035152533479!GO:0016251;general RNA polymerase II transcription factor activity;0.00556811953928748!GO:0015036;disulfide oxidoreductase activity;0.00603814920233682!GO:0042613;MHC class II protein complex;0.00609862580025586!GO:0009966;regulation of signal transduction;0.00620699403455557!GO:0006767;water-soluble vitamin metabolic process;0.0063170586394099!GO:0060090;molecular adaptor activity;0.00650643821612354!GO:0042110;T cell activation;0.00656078422657253!GO:0003725;double-stranded RNA binding;0.00676187926808587!GO:0004185;serine carboxypeptidase activity;0.00677750968429866!GO:0005667;transcription factor complex;0.00696810514811417!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00705419072656758!GO:0051252;regulation of RNA metabolic process;0.00706740959345157!GO:0030518;steroid hormone receptor signaling pathway;0.00707158727491355!GO:0005048;signal sequence binding;0.00707764086504027!GO:0051789;response to protein stimulus;0.00728946624672313!GO:0006986;response to unfolded protein;0.00728946624672313!GO:0004674;protein serine/threonine kinase activity;0.00730816145365254!GO:0031901;early endosome membrane;0.0074889723858749!GO:0030663;COPI coated vesicle membrane;0.00785064045234602!GO:0030126;COPI vesicle coat;0.00785064045234602!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00817640134509368!GO:0008287;protein serine/threonine phosphatase complex;0.00831923384358625!GO:0006611;protein export from nucleus;0.0083564246871746!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0083564246871746!GO:0046649;lymphocyte activation;0.00840649679654664!GO:0000096;sulfur amino acid metabolic process;0.00853429796092991!GO:0031625;ubiquitin protein ligase binding;0.0085574078438182!GO:0005791;rough endoplasmic reticulum;0.0087663451793301!GO:0019752;carboxylic acid metabolic process;0.00901124934385576!GO:0030137;COPI-coated vesicle;0.00903206934213008!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00939446486322079!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00939446486322079!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00947999930975428!GO:0015002;heme-copper terminal oxidase activity;0.00947999930975428!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00947999930975428!GO:0004129;cytochrome-c oxidase activity;0.00947999930975428!GO:0008610;lipid biosynthetic process;0.00959448348283554!GO:0051920;peroxiredoxin activity;0.00991007949681232!GO:0009607;response to biotic stimulus;0.00995714096357014!GO:0016481;negative regulation of transcription;0.010001820654523!GO:0030984;kininogen binding;0.0101955431540444!GO:0004213;cathepsin B activity;0.0101955431540444!GO:0006082;organic acid metabolic process;0.010345445118732!GO:0051098;regulation of binding;0.0104811964395918!GO:0042802;identical protein binding;0.0105177067899715!GO:0015923;mannosidase activity;0.0106234240356375!GO:0016859;cis-trans isomerase activity;0.0106554533928976!GO:0000314;organellar small ribosomal subunit;0.0106554533928976!GO:0005763;mitochondrial small ribosomal subunit;0.0106554533928976!GO:0043488;regulation of mRNA stability;0.0106554533928976!GO:0043487;regulation of RNA stability;0.0106554533928976!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0106554533928976!GO:0045047;protein targeting to ER;0.0106554533928976!GO:0006665;sphingolipid metabolic process;0.010683225680454!GO:0002443;leukocyte mediated immunity;0.0110955813962182!GO:0048468;cell development;0.0113195436696522!GO:0000287;magnesium ion binding;0.011397116780801!GO:0006516;glycoprotein catabolic process;0.0118661550470576!GO:0006689;ganglioside catabolic process;0.0119362080505722!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0119987598950025!GO:0022406;membrane docking;0.012046984711399!GO:0048278;vesicle docking;0.012046984711399!GO:0006383;transcription from RNA polymerase III promoter;0.0120833284803403!GO:0000118;histone deacetylase complex;0.0120988535403844!GO:0007006;mitochondrial membrane organization and biogenesis;0.012306599372601!GO:0030036;actin cytoskeleton organization and biogenesis;0.012306599372601!GO:0046466;membrane lipid catabolic process;0.0125120677384459!GO:0051223;regulation of protein transport;0.0126803682038125!GO:0048002;antigen processing and presentation of peptide antigen;0.012968519396678!GO:0043681;protein import into mitochondrion;0.0130900592436014!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0131158145450782!GO:0044438;microbody part;0.0131983534048958!GO:0044439;peroxisomal part;0.0131983534048958!GO:0051539;4 iron, 4 sulfur cluster binding;0.0134490908906448!GO:0006749;glutathione metabolic process;0.014151655981871!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0142470634884233!GO:0051235;maintenance of localization;0.0142470634884233!GO:0006914;autophagy;0.0142470634884233!GO:0035035;histone acetyltransferase binding;0.0146093808883541!GO:0031323;regulation of cellular metabolic process;0.0146131379981244!GO:0002252;immune effector process;0.0146131379981244!GO:0008312;7S RNA binding;0.0146166445609251!GO:0006352;transcription initiation;0.0150687296659323!GO:0006904;vesicle docking during exocytosis;0.0153563851958662!GO:0003711;transcription elongation regulator activity;0.0155184953691408!GO:0004563;beta-N-acetylhexosaminidase activity;0.0155629484108591!GO:0008139;nuclear localization sequence binding;0.0155629484108591!GO:0019904;protein domain specific binding;0.015659813310308!GO:0006629;lipid metabolic process;0.0156882385536986!GO:0001887;selenium metabolic process;0.016012048165362!GO:0016798;hydrolase activity, acting on glycosyl bonds;0.0160786197433969!GO:0002250;adaptive immune response;0.0164913228889813!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0164913228889813!GO:0042158;lipoprotein biosynthetic process;0.0165246665402229!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0165491783340005!GO:0045309;protein phosphorylated amino acid binding;0.0166735834687309!GO:0006497;protein amino acid lipidation;0.0167575768529638!GO:0006733;oxidoreduction coenzyme metabolic process;0.0167780348995189!GO:0050749;apolipoprotein E receptor binding;0.0171225611832822!GO:0050662;coenzyme binding;0.0171988527695711!GO:0048487;beta-tubulin binding;0.0173985375159462!GO:0017166;vinculin binding;0.0174220241942172!GO:0002757;immune response-activating signal transduction;0.0177599347704334!GO:0004192;cathepsin D activity;0.0181469879207436!GO:0019079;viral genome replication;0.0183407040383009!GO:0016584;nucleosome positioning;0.0189365505804139!GO:0005905;coated pit;0.0193162944429611!GO:0000059;protein import into nucleus, docking;0.0195305856444738!GO:0019318;hexose metabolic process;0.0195871332818177!GO:0016301;kinase activity;0.0197103885679446!GO:0003899;DNA-directed RNA polymerase activity;0.0200098661722964!GO:0006778;porphyrin metabolic process;0.0201013439661658!GO:0033013;tetrapyrrole metabolic process;0.0201013439661658!GO:0006302;double-strand break repair;0.0206706947696042!GO:0031903;microbody membrane;0.0206765267250467!GO:0005778;peroxisomal membrane;0.0206765267250467!GO:0008637;apoptotic mitochondrial changes;0.0208668120680097!GO:0030132;clathrin coat of coated pit;0.0210218665056379!GO:0047485;protein N-terminus binding;0.0212630986323313!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.0217589644210167!GO:0004218;cathepsin S activity;0.0224527396371726!GO:0001784;phosphotyrosine binding;0.022463368380264!GO:0006979;response to oxidative stress;0.022463368380264!GO:0004518;nuclease activity;0.0225369728795325!GO:0030119;AP-type membrane coat adaptor complex;0.0225369728795325!GO:0005684;U2-dependent spliceosome;0.0225414974776252!GO:0005637;nuclear inner membrane;0.0226655081645384!GO:0005869;dynactin complex;0.0234945200322794!GO:0004576;oligosaccharyl transferase activity;0.023614452828367!GO:0019058;viral infectious cycle;0.023614452828367!GO:0051452;cellular pH reduction;0.023614452828367!GO:0051453;regulation of cellular pH;0.023614452828367!GO:0045851;pH reduction;0.023614452828367!GO:0051540;metal cluster binding;0.0237412037553245!GO:0051536;iron-sulfur cluster binding;0.0237412037553245!GO:0000209;protein polyubiquitination;0.0238198746567148!GO:0042168;heme metabolic process;0.0238829138906028!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0238829138906028!GO:0016788;hydrolase activity, acting on ester bonds;0.0238924312418155!GO:0035258;steroid hormone receptor binding;0.0239074829910954!GO:0005996;monosaccharide metabolic process;0.0240761847677092!GO:0004553;hydrolase activity, hydrolyzing O-glycosyl compounds;0.0240912465817491!GO:0051881;regulation of mitochondrial membrane potential;0.0241613689009336!GO:0005777;peroxisome;0.024195617551892!GO:0042579;microbody;0.024195617551892!GO:0016605;PML body;0.0242835562157869!GO:0019362;pyridine nucleotide metabolic process;0.0243813254893728!GO:0008250;oligosaccharyl transferase complex;0.0246388967425475!GO:0002440;production of molecular mediator of immune response;0.0253979164951312!GO:0006661;phosphatidylinositol biosynthetic process;0.0256624187016844!GO:0005057;receptor signaling protein activity;0.0257631711876713!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0257631711876713!GO:0006405;RNA export from nucleus;0.0257631711876713!GO:0033033;negative regulation of myeloid cell apoptosis;0.0257631711876713!GO:0001803;regulation of type III hypersensitivity;0.0257631711876713!GO:0032733;positive regulation of interleukin-10 production;0.0257631711876713!GO:0033025;regulation of mast cell apoptosis;0.0257631711876713!GO:0001805;positive regulation of type III hypersensitivity;0.0257631711876713!GO:0033023;mast cell homeostasis;0.0257631711876713!GO:0002431;Fc receptor mediated stimulatory signaling pathway;0.0257631711876713!GO:0033032;regulation of myeloid cell apoptosis;0.0257631711876713!GO:0001802;type III hypersensitivity;0.0257631711876713!GO:0033028;myeloid cell apoptosis;0.0257631711876713!GO:0042590;antigen processing and presentation of exogenous peptide antigen via MHC class I;0.0257631711876713!GO:0033026;negative regulation of mast cell apoptosis;0.0257631711876713!GO:0033024;mast cell apoptosis;0.0257631711876713!GO:0030503;regulation of cell redox homeostasis;0.0257926964745513!GO:0006839;mitochondrial transport;0.0257998251053031!GO:0033157;regulation of intracellular protein transport;0.0258355284446401!GO:0042306;regulation of protein import into nucleus;0.0258355284446401!GO:0050811;GABA receptor binding;0.0258355284446401!GO:0006740;NADPH regeneration;0.0258355284446401!GO:0006098;pentose-phosphate shunt;0.0258355284446401!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0258355284446401!GO:0046983;protein dimerization activity;0.025884454802923!GO:0030125;clathrin vesicle coat;0.0260095355110799!GO:0030665;clathrin coated vesicle membrane;0.0260095355110799!GO:0006414;translational elongation;0.0260095355110799!GO:0030041;actin filament polymerization;0.0264488194440257!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0265177725082894!GO:0016791;phosphoric monoester hydrolase activity;0.0266734528000938!GO:0030880;RNA polymerase complex;0.0268208994965445!GO:0051287;NAD binding;0.0274766304597597!GO:0051090;regulation of transcription factor activity;0.0278979397612734!GO:0051251;positive regulation of lymphocyte activation;0.0279668387594934!GO:0030522;intracellular receptor-mediated signaling pathway;0.0280443383311878!GO:0006509;membrane protein ectodomain proteolysis;0.028383096945736!GO:0033619;membrane protein proteolysis;0.028383096945736!GO:0030131;clathrin adaptor complex;0.0286750040428768!GO:0016408;C-acyltransferase activity;0.0287137711146101!GO:0004428;inositol or phosphatidylinositol kinase activity;0.029011251731582!GO:0006769;nicotinamide metabolic process;0.0294662267568776!GO:0030521;androgen receptor signaling pathway;0.0298895163765479!GO:0045947;negative regulation of translational initiation;0.0299565326884058!GO:0002764;immune response-regulating signal transduction;0.0304249607125356!GO:0051087;chaperone binding;0.0304639229412935!GO:0043621;protein self-association;0.0305140872722519!GO:0006595;polyamine metabolic process;0.0307673712933201!GO:0031301;integral to organelle membrane;0.0311874698879827!GO:0006458;'de novo' protein folding;0.0312076255666488!GO:0051084;'de novo' posttranslational protein folding;0.0312076255666488!GO:0051219;phosphoprotein binding;0.0312897247793193!GO:0018193;peptidyl-amino acid modification;0.03174827563622!GO:0004722;protein serine/threonine phosphatase activity;0.0317515940090898!GO:0016860;intramolecular oxidoreductase activity;0.0320201295036839!GO:0005097;Rab GTPase activator activity;0.032485759017415!GO:0019747;regulation of isoprenoid metabolic process;0.0328985233120016!GO:0000303;response to superoxide;0.0329897360375126!GO:0046966;thyroid hormone receptor binding;0.0332861653135582!GO:0051059;NF-kappaB binding;0.0334837471255753!GO:0005070;SH3/SH2 adaptor activity;0.0338248626982128!GO:0002449;lymphocyte mediated immunity;0.0338667368904314!GO:0046578;regulation of Ras protein signal transduction;0.0344105948738411!GO:0006354;RNA elongation;0.0346155443539922!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0346895560556655!GO:0030258;lipid modification;0.0347251881138753!GO:0030029;actin filament-based process;0.0347671552307756!GO:0007050;cell cycle arrest;0.0347671552307756!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0347671552307756!GO:0006376;mRNA splice site selection;0.0347671552307756!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0347671552307756!GO:0002253;activation of immune response;0.0350475404622064!GO:0000278;mitotic cell cycle;0.0351192651434536!GO:0005784;translocon complex;0.0364199326741234!GO:0004559;alpha-mannosidase activity;0.0367389269406612!GO:0032428;beta-N-acetylgalactosaminidase activity;0.0372958355381485!GO:0030290;sphingolipid activator protein activity;0.0372958355381485!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.0372958355381485!GO:0032313;regulation of Rab GTPase activity;0.0378762035507842!GO:0032483;regulation of Rab protein signal transduction;0.0378762035507842!GO:0032482;Rab protein signal transduction;0.0378762035507842!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0380986130354883!GO:0015631;tubulin binding;0.0382993893228165!GO:0006013;mannose metabolic process;0.0388714565678119!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0392902341441744!GO:0001816;cytokine production;0.0402479033183899!GO:0019843;rRNA binding;0.0407114643834042!GO:0032507;maintenance of cellular protein localization;0.0409717428551131!GO:0009112;nucleobase metabolic process;0.0414076061124186!GO:0042585;germinal vesicle;0.0415579876047563!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0415759502156435!GO:0001573;ganglioside metabolic process;0.0416606006349962!GO:0046914;transition metal ion binding;0.0420195759003345!GO:0031124;mRNA 3'-end processing;0.0425096119339225!GO:0051092;activation of NF-kappaB transcription factor;0.0425096119339225!GO:0006506;GPI anchor biosynthetic process;0.0425657160941238!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0439586846367101!GO:0004448;isocitrate dehydrogenase activity;0.0441006559368596!GO:0006338;chromatin remodeling;0.0441006559368596!GO:0045637;regulation of myeloid cell differentiation;0.0442033224177673!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0446599819479053!GO:0000428;DNA-directed RNA polymerase complex;0.0446599819479053!GO:0001775;cell activation;0.0451372834912522!GO:0006892;post-Golgi vesicle-mediated transport;0.0460919038101326!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0460919038101326!GO:0010257;NADH dehydrogenase complex assembly;0.0460919038101326!GO:0033108;mitochondrial respiratory chain complex assembly;0.0460919038101326!GO:0006487;protein amino acid N-linked glycosylation;0.0470190632408186!GO:0030433;ER-associated protein catabolic process;0.0472020069575316!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0472020069575316!GO:0000339;RNA cap binding;0.0472020069575316!GO:0007162;negative regulation of cell adhesion;0.0476413780303667!GO:0006261;DNA-dependent DNA replication;0.0476684862943941!GO:0042287;MHC protein binding;0.0478688274244179!GO:0016581;NuRD complex;0.0482570939107039!GO:0006622;protein targeting to lysosome;0.048350770688718!GO:0008624;induction of apoptosis by extracellular signals;0.048600845546727!GO:0006626;protein targeting to mitochondrion;0.0497398432064812 | |||
|sample_id=11310 | |sample_id=11310 | ||
|sample_note=former endothelial progenitor cells | |sample_note=former endothelial progenitor cells | ||
| Line 76: | Line 105: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=SREBF1,2:3.41478320464;TLX2:2.47029857382;T:1.71325952343;IRF7:1.53037514345;DMAP1_NCOR{1,2}_SMARC:1.49714156639;IKZF2:1.45765586187;ELF1,2,4:1.31196285513;SPIB:1.30304928812;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.27410049793;SPI1:1.22934617851;IRF1,2:1.22636179442;ETS1,2:1.1916776609;RXRA_VDR{dimer}:1.16856891121;EN1,2:1.11368247704;STAT1,3:1.07430835976;FOX{D1,D2}:0.931276534218;CDX1,2,4:0.912696085267;NFE2L2:0.899822844353;RUNX1..3:0.885572216135;FOXA2:0.801495922695;NKX2-2,8:0.779102505228;TGIF1:0.730106493741;AR:0.726133877073;FOXO1,3,4:0.719349029414;ESR1:0.690725753344;RORA:0.650593799962;EP300:0.64932531046;PAX2:0.629234478707;POU5F1:0.621110031729;NFIL3:0.614826491723;HNF4A_NR2F1,2:0.605901276768;MAFB:0.597434887059;FOX{F1,F2,J1}:0.58790964637;NR6A1:0.576660104144;EBF1:0.57279052811;ARID5B:0.549928132334;SMAD1..7,9:0.538199088698;CEBPA,B_DDIT3:0.534890203261;MYFfamily:0.466055000051;TFCP2:0.457499368607;FOXP1:0.414598740068;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.408758384811;PDX1:0.402524085607;CUX2:0.383811257496;FOXN1:0.383649464751;HMGA1,2:0.378646704434;STAT2,4,6:0.299185036394;SPZ1:0.278318509765;PAX1,9:0.274292299805;NKX2-3_NKX2-5:0.259673748621;TFAP4:0.242031682023;NKX6-1,2:0.220077745402;MYOD1:0.216057914409;FOXD3:0.211639093401;NHLH1,2:0.195903462442;NFIX:0.158790288323;ZBTB16:0.151879257271;HBP1_HMGB_SSRP1_UBTF:0.151644010922;HMX1:0.123045961946;NKX3-2:0.119437746657;GATA6:0.109124798312;PAX6:0.108972323554;VSX1,2:0.102871448932;DBP:0.0959829688571;OCT4_SOX2{dimer}:0.0826816167979;MYB:0.0713741658868;HAND1,2:0.0665402627347;STAT5{A,B}:0.0572719946836;PRRX1,2:0.0559868663142;PAX3,7:0.0338056856462;RFX2..5_RFXANK_RFXAP:0.0316844782495;ESRRA:0.0255414103204;NR5A1,2:0.0253179274853;ELK1,4_GABP{A,B1}:0.0201979057464;NFKB1_REL_RELA:-0.02552209425;LMO2:-0.0280637369629;FOX{I1,J2}:-0.039783426575;HES1:-0.040661544839;PRDM1:-0.0583462732418;ZNF143:-0.0870882798278;HLF:-0.113934312194;ZEB1:-0.12552943166;NFE2:-0.137943042498;SP1:-0.138772230498;PAX4:-0.149287909984;NRF1:-0.156609379791;TAL1_TCF{3,4,12}:-0.166053764994;AIRE:-0.167870017497;FOXP3:-0.172286889976;PAX8:-0.173055712235;NANOG{mouse}:-0.203896326611;LHX3,4:-0.217915237396;RBPJ:-0.221426067039;CRX:-0.229660025154;SOX2:-0.230826898814;MTF1:-0.244993738562;PITX1..3:-0.245096994447;RXR{A,B,G}:-0.252303395984;GLI1..3:-0.253088141186;HSF1,2:-0.253294139138;bHLH_family:-0.272818969917;GATA4:-0.287242276922;YY1:-0.290659043524;NR3C1:-0.318822487486;BREu{core}:-0.326818120979;BPTF:-0.335456457784;PPARG:-0.382763312394;ZNF238:-0.402466533405;MAZ:-0.416852020661;FOSL2:-0.420942899066;PAX5:-0.424256301784;ADNP_IRX_SIX_ZHX:-0.428938917183;ZFP161:-0.440847814725;NFATC1..3:-0.455836859076;HNF1A:-0.457969865013;GZF1:-0.485585143428;HIF1A:-0.485791009214;SNAI1..3:-0.509009198744;HOX{A4,D4}:-0.510598192038;TOPORS:-0.527868152556;CREB1:-0.539673576903;NANOG:-0.546420529203;AHR_ARNT_ARNT2:-0.549883063291;FOS_FOS{B,L1}_JUN{B,D}:-0.552269482151;ATF5_CREB3:-0.553134094221;ALX1:-0.571441082787;ZNF148:-0.579515631772;EVI1:-0.591677494947;KLF4:-0.592018053965;REST:-0.594001090866;SOX5:-0.607636335657;MZF1:-0.612106567747;BACH2:-0.616245398177;XCPE1{core}:-0.645489340882;POU1F1:-0.652544903958;POU2F1..3:-0.656003730995;ATF4:-0.659076252094;SOX{8,9,10}:-0.662977143405;TFAP2{A,C}:-0.664333341374;GTF2I:-0.673965735348;GCM1,2:-0.680069103451;EGR1..3:-0.697951538507;ATF2:-0.704976616157;RREB1:-0.708978877966;E2F1..5:-0.741179243909;XBP1:-0.777402103949;NFY{A,B,C}:-0.781414431069;MTE{core}:-0.802225774008;FOXM1:-0.809962336961;MED-1{core}:-0.830015004474;LEF1_TCF7_TCF7L1,2:-0.84267175318;FOXQ1:-0.843535060778;PATZ1:-0.845065851328;CDC5L:-0.852543227165;MEF2{A,B,C,D}:-0.853105538102;TLX1..3_NFIC{dimer}:-0.872015803917;HIC1:-0.881430742344;ZNF423:-0.894209406952;TFAP2B:-0.897187637766;HOX{A5,B5}:-0.903125404002;GFI1:-0.906341683273;MYBL2:-0.948281566709;PBX1:-0.97028606177;ATF6:-0.973836342374;ALX4:-0.995869779442;ZBTB6:-1.01617482327;IKZF1:-1.0416720866;SOX17:-1.05291091687;NR1H4:-1.06123301716;UFEwm:-1.06741116189;GTF2A1,2:-1.06966517557;GFI1B:-1.07860463333;TBP:-1.10301557009;NFE2L1:-1.11686573879;HOXA9_MEIS1:-1.15907836206;HOX{A6,A7,B6,B7}:-1.16297200517;TEF:-1.2164253444;POU3F1..4:-1.2536434128;TFDP1:-1.26997231384;RFX1:-1.28959594811;TP53:-1.29145953465;TEAD1:-1.36270646344;POU6F1:-1.38892628973;SRF:-1.43143112567;NKX2-1,4:-1.46754280617;NKX3-1:-1.52628169861;TBX4,5:-1.54374036774;JUN:-1.58448959838;ONECUT1,2:-1.96387179002;ZNF384:-2.01064839966;ZIC1..3:-2.14345164266;FOXL1:-2.1782605712 | |top_motifs=SREBF1,2:3.41478320464;TLX2:2.47029857382;T:1.71325952343;IRF7:1.53037514345;DMAP1_NCOR{1,2}_SMARC:1.49714156639;IKZF2:1.45765586187;ELF1,2,4:1.31196285513;SPIB:1.30304928812;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.27410049793;SPI1:1.22934617851;IRF1,2:1.22636179442;ETS1,2:1.1916776609;RXRA_VDR{dimer}:1.16856891121;EN1,2:1.11368247704;STAT1,3:1.07430835976;FOX{D1,D2}:0.931276534218;CDX1,2,4:0.912696085267;NFE2L2:0.899822844353;RUNX1..3:0.885572216135;FOXA2:0.801495922695;NKX2-2,8:0.779102505228;TGIF1:0.730106493741;AR:0.726133877073;FOXO1,3,4:0.719349029414;ESR1:0.690725753344;RORA:0.650593799962;EP300:0.64932531046;PAX2:0.629234478707;POU5F1:0.621110031729;NFIL3:0.614826491723;HNF4A_NR2F1,2:0.605901276768;MAFB:0.597434887059;FOX{F1,F2,J1}:0.58790964637;NR6A1:0.576660104144;EBF1:0.57279052811;ARID5B:0.549928132334;SMAD1..7,9:0.538199088698;CEBPA,B_DDIT3:0.534890203261;MYFfamily:0.466055000051;TFCP2:0.457499368607;FOXP1:0.414598740068;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.408758384811;PDX1:0.402524085607;CUX2:0.383811257496;FOXN1:0.383649464751;HMGA1,2:0.378646704434;STAT2,4,6:0.299185036394;SPZ1:0.278318509765;PAX1,9:0.274292299805;NKX2-3_NKX2-5:0.259673748621;TFAP4:0.242031682023;NKX6-1,2:0.220077745402;MYOD1:0.216057914409;FOXD3:0.211639093401;NHLH1,2:0.195903462442;NFIX:0.158790288323;ZBTB16:0.151879257271;HBP1_HMGB_SSRP1_UBTF:0.151644010922;HMX1:0.123045961946;NKX3-2:0.119437746657;GATA6:0.109124798312;PAX6:0.108972323554;VSX1,2:0.102871448932;DBP:0.0959829688571;OCT4_SOX2{dimer}:0.0826816167979;MYB:0.0713741658868;HAND1,2:0.0665402627347;STAT5{A,B}:0.0572719946836;PRRX1,2:0.0559868663142;PAX3,7:0.0338056856462;RFX2..5_RFXANK_RFXAP:0.0316844782495;ESRRA:0.0255414103204;NR5A1,2:0.0253179274853;ELK1,4_GABP{A,B1}:0.0201979057464;NFKB1_REL_RELA:-0.02552209425;LMO2:-0.0280637369629;FOX{I1,J2}:-0.039783426575;HES1:-0.040661544839;PRDM1:-0.0583462732418;ZNF143:-0.0870882798278;HLF:-0.113934312194;ZEB1:-0.12552943166;NFE2:-0.137943042498;SP1:-0.138772230498;PAX4:-0.149287909984;NRF1:-0.156609379791;TAL1_TCF{3,4,12}:-0.166053764994;AIRE:-0.167870017497;FOXP3:-0.172286889976;PAX8:-0.173055712235;NANOG{mouse}:-0.203896326611;LHX3,4:-0.217915237396;RBPJ:-0.221426067039;CRX:-0.229660025154;SOX2:-0.230826898814;MTF1:-0.244993738562;PITX1..3:-0.245096994447;RXR{A,B,G}:-0.252303395984;GLI1..3:-0.253088141186;HSF1,2:-0.253294139138;bHLH_family:-0.272818969917;GATA4:-0.287242276922;YY1:-0.290659043524;NR3C1:-0.318822487486;BREu{core}:-0.326818120979;BPTF:-0.335456457784;PPARG:-0.382763312394;ZNF238:-0.402466533405;MAZ:-0.416852020661;FOSL2:-0.420942899066;PAX5:-0.424256301784;ADNP_IRX_SIX_ZHX:-0.428938917183;ZFP161:-0.440847814725;NFATC1..3:-0.455836859076;HNF1A:-0.457969865013;GZF1:-0.485585143428;HIF1A:-0.485791009214;SNAI1..3:-0.509009198744;HOX{A4,D4}:-0.510598192038;TOPORS:-0.527868152556;CREB1:-0.539673576903;NANOG:-0.546420529203;AHR_ARNT_ARNT2:-0.549883063291;FOS_FOS{B,L1}_JUN{B,D}:-0.552269482151;ATF5_CREB3:-0.553134094221;ALX1:-0.571441082787;ZNF148:-0.579515631772;EVI1:-0.591677494947;KLF4:-0.592018053965;REST:-0.594001090866;SOX5:-0.607636335657;MZF1:-0.612106567747;BACH2:-0.616245398177;XCPE1{core}:-0.645489340882;POU1F1:-0.652544903958;POU2F1..3:-0.656003730995;ATF4:-0.659076252094;SOX{8,9,10}:-0.662977143405;TFAP2{A,C}:-0.664333341374;GTF2I:-0.673965735348;GCM1,2:-0.680069103451;EGR1..3:-0.697951538507;ATF2:-0.704976616157;RREB1:-0.708978877966;E2F1..5:-0.741179243909;XBP1:-0.777402103949;NFY{A,B,C}:-0.781414431069;MTE{core}:-0.802225774008;FOXM1:-0.809962336961;MED-1{core}:-0.830015004474;LEF1_TCF7_TCF7L1,2:-0.84267175318;FOXQ1:-0.843535060778;PATZ1:-0.845065851328;CDC5L:-0.852543227165;MEF2{A,B,C,D}:-0.853105538102;TLX1..3_NFIC{dimer}:-0.872015803917;HIC1:-0.881430742344;ZNF423:-0.894209406952;TFAP2B:-0.897187637766;HOX{A5,B5}:-0.903125404002;GFI1:-0.906341683273;MYBL2:-0.948281566709;PBX1:-0.97028606177;ATF6:-0.973836342374;ALX4:-0.995869779442;ZBTB6:-1.01617482327;IKZF1:-1.0416720866;SOX17:-1.05291091687;NR1H4:-1.06123301716;UFEwm:-1.06741116189;GTF2A1,2:-1.06966517557;GFI1B:-1.07860463333;TBP:-1.10301557009;NFE2L1:-1.11686573879;HOXA9_MEIS1:-1.15907836206;HOX{A6,A7,B6,B7}:-1.16297200517;TEF:-1.2164253444;POU3F1..4:-1.2536434128;TFDP1:-1.26997231384;RFX1:-1.28959594811;TP53:-1.29145953465;TEAD1:-1.36270646344;POU6F1:-1.38892628973;SRF:-1.43143112567;NKX2-1,4:-1.46754280617;NKX3-1:-1.52628169861;TBX4,5:-1.54374036774;JUN:-1.58448959838;ONECUT1,2:-1.96387179002;ZNF384:-2.01064839966;ZIC1..3:-2.14345164266;FOXL1:-2.1782605712 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11310-117C5;search_select_hide=table117:FF:11310-117C5 | |||
}} | }} | ||
Latest revision as of 16:32, 3 June 2020
| Name: | CD14+ monocyte derived endothelial progenitor cells, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11897 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11897
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11897
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.159 |
| 10 | 10 | 0.024 |
| 100 | 100 | 0.869 |
| 101 | 101 | 0.238 |
| 102 | 102 | 0.836 |
| 103 | 103 | 0.109 |
| 104 | 104 | 0.952 |
| 105 | 105 | 0.254 |
| 106 | 106 | 0.135 |
| 107 | 107 | 0.49 |
| 108 | 108 | 0.815 |
| 109 | 109 | 0.081 |
| 11 | 11 | 0.0887 |
| 110 | 110 | 0.342 |
| 111 | 111 | 0.013 |
| 112 | 112 | 0.236 |
| 113 | 113 | 0.722 |
| 114 | 114 | 0.0597 |
| 115 | 115 | 0.21 |
| 116 | 116 | 0.881 |
| 117 | 117 | 0.02 |
| 118 | 118 | 0.354 |
| 119 | 119 | 0.078 |
| 12 | 12 | 0.449 |
| 120 | 120 | 0.414 |
| 121 | 121 | 0.909 |
| 122 | 122 | 0.72 |
| 123 | 123 | 0.0486 |
| 124 | 124 | 0.146 |
| 125 | 125 | 0.628 |
| 126 | 126 | 0.134 |
| 127 | 127 | 0.111 |
| 128 | 128 | 0.119 |
| 129 | 129 | 0.904 |
| 13 | 13 | 0.102 |
| 130 | 130 | 0.585 |
| 131 | 131 | 0.303 |
| 132 | 132 | 0.889 |
| 133 | 133 | 0.949 |
| 134 | 134 | 0.595 |
| 135 | 135 | 0.0678 |
| 136 | 136 | 0.867 |
| 137 | 137 | 0.0177 |
| 138 | 138 | 0.0434 |
| 139 | 139 | 0.0293 |
| 14 | 14 | 0.167 |
| 140 | 140 | 0.482 |
| 141 | 141 | 0.424 |
| 142 | 142 | 0.185 |
| 143 | 143 | 0.121 |
| 144 | 144 | 0.445 |
| 145 | 145 | 0.278 |
| 146 | 146 | 0.52 |
| 147 | 147 | 0.145 |
| 148 | 148 | 0.025 |
| 149 | 149 | 0.806 |
| 15 | 15 | 0.162 |
| 150 | 150 | 0.577 |
| 151 | 151 | 0.762 |
| 152 | 152 | 0.389 |
| 153 | 153 | 0.698 |
| 154 | 154 | 0.833 |
| 155 | 155 | 0.0747 |
| 156 | 156 | 0.567 |
| 157 | 157 | 0.741 |
| 158 | 158 | 0.545 |
| 159 | 159 | 0.215 |
| 16 | 16 | 0.342 |
| 160 | 160 | 0.649 |
| 161 | 161 | 0.296 |
| 162 | 162 | 0.68 |
| 163 | 163 | 0.313 |
| 164 | 164 | 0.29 |
| 165 | 165 | 0.305 |
| 166 | 166 | 0.261 |
| 167 | 167 | 0.609 |
| 168 | 168 | 0.143 |
| 169 | 169 | 0.016 |
| 17 | 17 | 0.385 |
| 18 | 18 | 0.535 |
| 19 | 19 | 0.387 |
| 2 | 2 | 0.801 |
| 20 | 20 | 0.966 |
| 21 | 21 | 0.273 |
| 22 | 22 | 0.178 |
| 23 | 23 | 0.465 |
| 24 | 24 | 0.0518 |
| 25 | 25 | 0.359 |
| 26 | 26 | 0.152 |
| 27 | 27 | 0.0574 |
| 28 | 28 | 0.549 |
| 29 | 29 | 0.245 |
| 3 | 3 | 0.0214 |
| 30 | 30 | 0.857 |
| 31 | 31 | 0.494 |
| 32 | 32 | 0.813 |
| 33 | 33 | 0.644 |
| 34 | 34 | 0.276 |
| 35 | 35 | 0.32 |
| 36 | 36 | 0.155 |
| 37 | 37 | 0.142 |
| 38 | 38 | 0.153 |
| 39 | 39 | 0.833 |
| 4 | 4 | 0.882 |
| 40 | 40 | 0.19 |
| 41 | 41 | 0.203 |
| 42 | 42 | 0.396 |
| 43 | 43 | 0.0983 |
| 44 | 44 | 0.362 |
| 45 | 45 | 0.536 |
| 46 | 46 | 0.283 |
| 47 | 47 | 0.372 |
| 48 | 48 | 0.244 |
| 49 | 49 | 0.128 |
| 5 | 5 | 0.21 |
| 50 | 50 | 0.844 |
| 51 | 51 | 0.635 |
| 52 | 52 | 0.378 |
| 53 | 53 | 0.175 |
| 54 | 54 | 0.525 |
| 55 | 55 | 0.0248 |
| 56 | 56 | 0.741 |
| 57 | 57 | 0.65 |
| 58 | 58 | 0.0931 |
| 59 | 59 | 0.176 |
| 6 | 6 | 0.367 |
| 60 | 60 | 0.0829 |
| 61 | 61 | 0.131 |
| 62 | 62 | 0.124 |
| 63 | 63 | 0.375 |
| 64 | 64 | 0.292 |
| 65 | 65 | 0.162 |
| 66 | 66 | 0.917 |
| 67 | 67 | 0.315 |
| 68 | 68 | 0.485 |
| 69 | 69 | 0.938 |
| 7 | 7 | 0.138 |
| 70 | 70 | 0.0216 |
| 71 | 71 | 0.0374 |
| 72 | 72 | 0.227 |
| 73 | 73 | 0.0802 |
| 74 | 74 | 0.845 |
| 75 | 75 | 0.0214 |
| 76 | 76 | 0.332 |
| 77 | 77 | 0.448 |
| 78 | 78 | 0.127 |
| 79 | 79 | 0.468 |
| 8 | 8 | 0.179 |
| 80 | 80 | 0.0461 |
| 81 | 81 | 0.223 |
| 82 | 82 | 0.0689 |
| 83 | 83 | 0.952 |
| 84 | 84 | 0.566 |
| 85 | 85 | 0.0799 |
| 86 | 86 | 0.0235 |
| 87 | 87 | 0.125 |
| 88 | 88 | 0.267 |
| 89 | 89 | 0.497 |
| 9 | 9 | 0.299 |
| 90 | 90 | 0.0202 |
| 91 | 91 | 0.865 |
| 92 | 92 | 0.046 |
| 93 | 93 | 0.896 |
| 94 | 94 | 0.139 |
| 95 | 95 | 0.284 |
| 96 | 96 | 0.218 |
| 97 | 97 | 0.967 |
| 98 | 98 | 0.552 |
| 99 | 99 | 0.55 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11897
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0000576 monocyte
EFO:0002091 biological replicate
FF:0000248 human endothelial progenitor cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0000766 (myeloid leukocyte)
0002078 (meso-epithelial cell)
0000219 (motile cell)
0000215 (barrier cell)
0000134 (mesenchymal cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000034 (stem cell)
0000576 (monocyte)
0000115 (endothelial cell)
0000566 (angioblastic mesenchymal cell)
0002619 (adult endothelial progenitor cell)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000248 (human endothelial progenitor cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)
