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{{f5samples
{{f5samples
|id=FF:10708-109H6
|DRA_sample_Accession=CAGE@SAMD00005820
|name=alveolar cell carcinoma cell line:SW 1573
|accession_numbers=CAGE;DRX007825;DRR008697;DRZ000122;DRZ001507;DRZ011472;DRZ012857
|sample_id=10708
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0004821,UBERON:0004903,UBERON:0000479,UBERON:0000058,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0003914,UBERON:0007499,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0009569,UBERON:0005178,UBERON:0000487,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0003215,UBERON:0005181,UBERON:0010317,UBERON:0009856,UBERON:0010368,UBERON:0009911,UBERON:0002299,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915,UBERON:0006524,UBERON:0008874,UBERON:0002169,UBERON:0004894,UBERON:0002173,UBERON:0002186
|rna_tube_id=109H6
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000082,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000322
|rna_box=109
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305,DOID:1325,DOID:3905,DOID:3908,DOID:3910,DOID:3904
|rna_position=H6
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100353,FF:0102061,FF:0101120,FF:0100762,FF:0102058,FF:0102057,FF:0102060,FF:0104802
|sample_cell_lot=
|comment=
|sample_cell_catalog=CRL-2170
|created_by=
|sample_company=ATCC
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
|expression_enrichment_score=chr17:46682321..46682362,-!p1@HOXB6!2.13!132.98!HOXB6;;chr17:46692457..46692484,-!p2@HOXB8!1.90!77.85!HOXB8;;chr3:25470156..25470227,+!p2@RARB!1.84!67.62!RARB;;chr17:46622205..46622218,-!p3@HOXB2!1.80!72.17!HOXB2;;chr17:46675558..46675577,-!p2@HOXB6!1.79!61.37!HOXB6;;chr17:46703687..46703740,-!p1@HOXB9!1.60!38.64!HOXB9;;chr5:92918919..92918942,+!p1@NR2F1!1.56!152.58!NR2F1;;chr17:46622229..46622257,-!p6@HOXB2!1.56!41.48!HOXB2;;chr12:66218598..66218645,+!p2@HMGA2!1.49!132.12!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.44!26.42!HOXC5;;chr3:12330560..12330579,+!p1@PPARG!1.43!29.55!PPARG;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!25.86!ZBED1;;chr11:31832658..31832681,-!p1@PAX6!1.41!24.44!PAX6;;chr17:46622175..46622186,-!p12@HOXB2!1.41!24.44!HOXB2;;chr17:46690839..46690884,-!p1@HOXB8!1.40!23.87!HOXB8;;chr17:46621101..46621143,-!p7@HOXB2!1.39!31.25!HOXB2;;chr5:137804484..137804498,+!p2@EGR1!1.35!82.97!EGR1;;chr15:96874145..96874166,+!p7@NR2F2!1.35!40.35!NR2F2;;chr12:66218255..66218304,+!p3@HMGA2!1.34!55.41!HMGA2;;chr20:50179368..50179392,-!p2@NFATC2!1.34!26.99!NFATC2;;chr7:27153454..27153469,-!p2@HOXA3!1.34!20.74!HOXA3;;chr5:72744445..72744466,-!p2@FOXD1!1.33!33.53!FOXD1;;chr2:19558373..19558392,-!p1@OSR1!1.31!52.28!OSR1;;chr17:46692318..46692362,-!p5@HOXB8!1.31!19.61!HOXB8;;chr7:27205106..27205134,-!p2@HOXA9!1.31!19.32!HOXA9;;chr17:46622070..46622109,-!p1@HOXB2!1.30!41.77!HOXB2;;chr15:96869114..96869160,+!p11@NR2F2!1.30!25.57!NR2F2;;chr5:72744594..72744609,-!p1@FOXD1!1.29!83.82!FOXD1;;chr17:46622114..46622138,-!p4@HOXB2!1.29!27.85!HOXB2;;chr17:46621146..46621180,-!p10@HOXB2!1.26!17.05!HOXB2;;chr17:46692287..46692317,-!p7@HOXB8!1.26!17.05!HOXB8;;chr6:45390025..45390076,+!p2@RUNX2!1.24!38.93!RUNX2;;chr5:138609489..138609542,+!p8@MATR3!1.21!15.06!MATR3;;chr6:45390300..45390335,+!p4@RUNX2!1.19!22.45!RUNX2;;chr5:92919100..92919135,+!p3@NR2F1!1.18!17.05!NR2F1;;chr17:46692624..46692659,-!p3@HOXB8!1.18!14.21!HOXB8;;chr15:96874012..96874042,+!p2@NR2F2!1.17!123.60!NR2F2;;chr19:21950332..21950356,-!p2@ZNF100!1.17!29.55!ZNF100;;chr15:96869255..96869291,+!p6@NR2F2!1.16!24.15!NR2F2;;chr7:42276787..42276815,-!p1@GLI3!1.15!34.95!GLI3;;chr6:45390077..45390105,+!p9@RUNX2!1.14!16.48!RUNX2;;chr3:128206762..128206781,-!p2@GATA2!1.13!77.00!GATA2;;chr17:46667594..46667619,-!p1@HOXB3!1.13!12.50!HOXB3;;chr11:31832610..31832639,-!p5@PAX6!1.13!12.50!PAX6;;chr5:137804405..137804444,+!p3@EGR1!1.12!14.78!EGR1;;chr2:171571931..171571959,+!p3@SP5!1.12!12.22!SP5;;chr5:92918894..92918912,+!p2@NR2F1!1.11!38.93!NR2F1;;chr8:67525443..67525459,-!p2@MYBL1!1.11!17.62!MYBL1;;chr5:72743793..72743855,-!p4@FOXD1!1.11!13.92!FOXD1;;chr7:156803329..156803362,-!p1@MNX1!1.11!11.93!MNX1;;chr17:46688334..46688385,-!p1@HOXB7!1.10!16.76!HOXB7;;chr3:193853927..193853944,+!p1@HES1!1.09!363.69!HES1;;chr7:26191809..26191890,+!p1@NFE2L3!1.09!55.69!NFE2L3;;chr6:45390269..45390298,+!p5@RUNX2!1.09!19.04!RUNX2;;chr17:41623692..41623715,-!p1@ETV4!1.08!46.88!ETV4;;chr17:46655704..46655718,-!p2@HOXB4!1.06!15.63!HOXB4;;chr7:27192185..27192209,-!p1@HOXA3!1.06!10.51!HOXA3;;chr15:96874244..96874259,+!p5@NR2F2!1.05!24.72!NR2F2;;chr13:100634031..100634045,+!p1@ZIC2!1.05!10.23!ZIC2;;chr12:66218836..66218888,+!p1@HMGA2!1.04!94.62!HMGA2;;chr3:12329358..12329393,+!p3@PPARG!1.04!25.00!PPARG;;chr9:124991204..124991246,-!p1@LHX6!1.04!9.94!LHX6;;chr7:27183291..27183324,-!p1@HOXA5!1.04!9.94!HOXA5;;chr5:137801160..137801176,+!p1@EGR1!1.03!971.18!EGR1;;chr5:134369905..134369972,-!p1@PITX1!1.03!15.06!PITX1;;chr7:27205136..27205164,-!p1@HOXA9!1.03!9.66!HOXA9;;chr17:46675619..46675642,-!p5@HOXB6!1.03!9.66!HOXB6;;chr15:96869165..96869183,+!p20@NR2F2!1.02!9.38!NR2F2;;chr7:27196267..27196311,-!p1@HOXA7!1.02!9.38!HOXA7;;chr19:45971246..45971265,+!p1@FOSB!1.01!173.32!FOSB;;chr7:64023410..64023428,-!p2@ZNF680!1.01!14.78!ZNF680;;chr12:66218443..66218461,+!p8@HMGA2!1.01!11.93!HMGA2;;chr6:35310395..35310410,+!p2@PPARD!1.00!35.80!PPARD;;chr20:2673383..2673441,+!p1@EBF4!1.00!14.49!EBF4;;chr7:27183263..27183284,-!p2@HOXA5!1.00!9.09!HOXA5;;chr11:65667884..65667895,-!p2@FOSL1!0.99!34.95!FOSL1;;chr5:150284532..150284549,-!p1@ZNF300!0.99!18.47!ZNF300;;chr20:55204351..55204377,+!p1@TFAP2C!0.99!11.37!TFAP2C;;chr3:141087339..141087387,+!p2@ZBTB38!0.98!90.36!ZBTB38;;chr15:96874063..96874074,+!p10@NR2F2!0.98!15.91!NR2F2;;chr17:46675420..46675465,-!p3@HOXB6!0.98!9.94!HOXB6;;chr17:46692603..46692621,-!p6@HOXB8!0.98!8.52!HOXB8;;chr17:46703826..46703845,-!p3@HOXB9!0.98!8.52!HOXB9;;chr12:66218183..66218209,+!p4@HMGA2!0.97!16.48!HMGA2;;chr5:174151553..174151610,+!p1@MSX2!0.97!14.21!MSX2;;chr12:66218378..66218401,+!p6@HMGA2!0.97!13.07!HMGA2;;chr15:96874216..96874236,+!p13@NR2F2!0.97!13.07!NR2F2;;chr13:100634130..100634143,+!p3@ZIC2!0.97!8.24!ZIC2;;chr5:43067636..43067674,+!p6@ZNF131!0.96!11.08!ZNF131;;chr5:92919375..92919438,+!p6@NR2F1!0.96!8.81!NR2F1;;chr11:65667846..65667868,-!p1@FOSL1!0.95!215.66!FOSL1;;chr12:3068544..3068597,+!p1@TEAD4!0.95!48.59!TEAD4;;chr5:137804357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|sample_dev_stage=
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|sample_tissue=lung
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=44
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=2.15
|rna_od260/280=2.09
|sample_cell_type=pneumocyte
|sample_cell_line=SW 1573
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=alveolar cell carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=59.67872
|rna_concentration=1.26976
|sample_note=
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|sample_description=
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|fonse_cell_line_closure=FF:0100353,FF:0101120
Line 66: Line 40:
|fonse_treatment=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/alveolar%2520cell%2520carcinoma%2520cell%2520line%253aSW%25201573.CNhs11838.10708-109H6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/alveolar%2520cell%2520carcinoma%2520cell%2520line%253aSW%25201573.CNhs11838.10708-109H6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/alveolar%2520cell%2520carcinoma%2520cell%2520line%253aSW%25201573.CNhs11838.10708-109H6.hg38.nobarcode.ctss.bed.gz
|id=FF:10708-109H6
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|is_obsolete=
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|microRNAs=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10708
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10708
|name=alveolar cell carcinoma cell line:SW 1573
|namespace=FANTOM5
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|rna_box=109
|rna_catalog_number=
|rna_concentration=1.26976
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.15
|rna_od260/280=2.09
|rna_position=H6
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=109H6
|rna_weight_ug=59.67872
|sample_age=44
|sample_category=cell lines
|sample_cell_catalog=CRL-2170
|sample_cell_line=SW 1573
|sample_cell_lot=
|sample_cell_type=pneumocyte
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=ATCC
|sample_description=
|sample_dev_stage=
|sample_disease=alveolar cell carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.49630291413998e-265!GO:0043226;organelle;1.60376405889666e-227!GO:0043229;intracellular organelle;7.33160168439234e-227!GO:0043231;intracellular membrane-bound organelle;4.59781503258394e-226!GO:0043227;membrane-bound organelle;4.78255684648789e-226!GO:0005737;cytoplasm;1.07576621784586e-174!GO:0044422;organelle part;1.71610296173593e-172!GO:0044446;intracellular organelle part;6.68859385955582e-171!GO:0044444;cytoplasmic part;1.56215010250936e-127!GO:0032991;macromolecular complex;2.62314016739989e-124!GO:0005634;nucleus;1.21153572156841e-104!GO:0044237;cellular metabolic process;4.91934060007925e-101!GO:0044238;primary metabolic process;1.19095707873705e-100!GO:0030529;ribonucleoprotein complex;5.05515591836054e-100!GO:0043170;macromolecule metabolic process;1.77091786060541e-97!GO:0044428;nuclear part;2.85792846848421e-89!GO:0043233;organelle lumen;1.4956905642758e-82!GO:0031974;membrane-enclosed lumen;1.4956905642758e-82!GO:0003723;RNA binding;5.11421403434188e-78!GO:0005739;mitochondrion;1.10259887456547e-75!GO:0005515;protein binding;1.05417203327869e-64!GO:0043234;protein complex;2.52291993715846e-64!GO:0043283;biopolymer metabolic process;2.1259733132588e-59!GO:0006396;RNA processing;8.08724665726182e-58!GO:0005840;ribosome;3.40264923965925e-57!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.68652429482161e-54!GO:0006412;translation;1.26713452491052e-51!GO:0016043;cellular component organization and biogenesis;3.73772661459797e-51!GO:0010467;gene expression;6.31282385441494e-51!GO:0031090;organelle membrane;7.08774755222987e-51!GO:0031981;nuclear lumen;1.34767589400781e-50!GO:0044429;mitochondrial part;2.48247376228856e-50!GO:0003735;structural constituent of ribosome;3.75638941512073e-50!GO:0019538;protein metabolic process;3.4989794934343e-49!GO:0031967;organelle envelope;1.43225578092008e-46!GO:0031975;envelope;2.42752525753587e-46!GO:0044267;cellular protein metabolic process;8.54874553157363e-45!GO:0016071;mRNA metabolic process;1.04411126165944e-44!GO:0043228;non-membrane-bound organelle;3.77874359414367e-44!GO:0043232;intracellular non-membrane-bound organelle;3.77874359414367e-44!GO:0044260;cellular macromolecule metabolic process;3.77874359414367e-44!GO:0033279;ribosomal subunit;8.37119596911095e-44!GO:0006259;DNA metabolic process;8.12957232699755e-43!GO:0008380;RNA splicing;1.75939826476133e-41!GO:0044249;cellular biosynthetic process;8.38763448043446e-41!GO:0033036;macromolecule localization;2.0486422262044e-39!GO:0006397;mRNA processing;3.38530532580225e-39!GO:0015031;protein transport;1.41140573052576e-38!GO:0007049;cell cycle;2.92713538840644e-38!GO:0009058;biosynthetic process;8.20312418711342e-38!GO:0006996;organelle organization and biogenesis;2.06752000540325e-37!GO:0005829;cytosol;1.42943438843472e-36!GO:0009059;macromolecule biosynthetic process;1.46955369405396e-36!GO:0045184;establishment of protein localization;5.30666133934997e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.47849246667525e-36!GO:0003676;nucleic acid binding;1.57493174676433e-35!GO:0008104;protein localization;1.6705709739845e-35!GO:0046907;intracellular transport;2.3117031919821e-35!GO:0065003;macromolecular complex assembly;6.93387589067046e-34!GO:0000166;nucleotide binding;4.03240766161122e-33!GO:0005681;spliceosome;3.055808969705e-31!GO:0005740;mitochondrial envelope;4.13594891016917e-31!GO:0005654;nucleoplasm;1.05777447756471e-30!GO:0019866;organelle inner membrane;1.46489291606379e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.7207961205195e-30!GO:0022607;cellular component assembly;2.1587680506399e-29!GO:0022402;cell cycle process;3.13632054668451e-29!GO:0031966;mitochondrial membrane;4.77846878390381e-29!GO:0000278;mitotic cell cycle;2.53497924693459e-28!GO:0005743;mitochondrial inner membrane;1.00325905328906e-27!GO:0006886;intracellular protein transport;4.09431532298469e-27!GO:0006974;response to DNA damage stimulus;2.81065528150028e-26!GO:0044451;nucleoplasm part;1.40328541304029e-24!GO:0016070;RNA metabolic process;2.24965996138257e-24!GO:0016462;pyrophosphatase activity;2.62281220571494e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.26306482251107e-24!GO:0051649;establishment of cellular localization;4.37098979087201e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;4.37098979087201e-24!GO:0017111;nucleoside-triphosphatase activity;5.50780347745261e-24!GO:0044445;cytosolic part;6.05167676823307e-24!GO:0051641;cellular localization;6.22648652537969e-24!GO:0032553;ribonucleotide binding;1.50593423989122e-23!GO:0032555;purine ribonucleotide binding;1.50593423989122e-23!GO:0005694;chromosome;1.63878590964187e-23!GO:0000087;M phase of mitotic cell cycle;1.65012188765654e-23!GO:0015934;large ribosomal subunit;2.01567699368613e-23!GO:0006281;DNA repair;2.5615057153848e-23!GO:0031980;mitochondrial lumen;2.86925393565295e-23!GO:0005759;mitochondrial matrix;2.86925393565295e-23!GO:0017076;purine nucleotide binding;2.93997260106318e-23!GO:0006119;oxidative phosphorylation;4.0719059358441e-23!GO:0007067;mitosis;4.65139047711065e-23!GO:0044455;mitochondrial membrane part;6.33361389960256e-23!GO:0051301;cell division;1.43751817238549e-22!GO:0005524;ATP binding;1.98495625844592e-22!GO:0032559;adenyl ribonucleotide binding;2.24002527065461e-22!GO:0022403;cell cycle phase;6.24370162084852e-22!GO:0030554;adenyl nucleotide binding;8.59984712078777e-22!GO:0015935;small ribosomal subunit;1.4872013643138e-21!GO:0044427;chromosomal part;2.78151375348861e-21!GO:0012505;endomembrane system;3.01710265532647e-21!GO:0016874;ligase activity;1.95187641373942e-20!GO:0006457;protein folding;2.49548027651269e-20!GO:0005730;nucleolus;4.18727807948435e-20!GO:0000279;M phase;8.92059013107219e-20!GO:0006512;ubiquitin cycle;1.22598847976854e-19!GO:0022618;protein-RNA complex assembly;1.93491779715344e-19!GO:0009719;response to endogenous stimulus;8.98928843981679e-19!GO:0051276;chromosome organization and biogenesis;1.09116143447162e-18!GO:0006260;DNA replication;2.15528029572884e-18!GO:0005746;mitochondrial respiratory chain;4.46190795511136e-18!GO:0044265;cellular macromolecule catabolic process;1.05488647092468e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.2571586811614e-17!GO:0042254;ribosome biogenesis and assembly;4.15763589734858e-17!GO:0005761;mitochondrial ribosome;8.41625904932293e-17!GO:0000313;organellar ribosome;8.41625904932293e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.01518121900479e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;1.44000246452557e-16!GO:0000375;RNA splicing, via transesterification reactions;1.44000246452557e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.44000246452557e-16!GO:0050136;NADH dehydrogenase (quinone) activity;2.834253696041e-16!GO:0003954;NADH dehydrogenase activity;2.834253696041e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.834253696041e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.23302696517511e-16!GO:0008135;translation factor activity, nucleic acid binding;4.5401472386127e-16!GO:0016887;ATPase activity;5.86772815362087e-16!GO:0042623;ATPase activity, coupled;6.25508050879115e-16!GO:0048770;pigment granule;7.72938414367751e-16!GO:0042470;melanosome;7.72938414367751e-16!GO:0005635;nuclear envelope;8.76669894339203e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.16269649833584e-15!GO:0031965;nuclear membrane;1.47091257535561e-15!GO:0019941;modification-dependent protein catabolic process;1.96899062742258e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.96899062742258e-15!GO:0051726;regulation of cell cycle;2.22348683320368e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.59061952498875e-15!GO:0044453;nuclear membrane part;3.11746360716414e-15!GO:0044257;cellular protein catabolic process;3.42314094576242e-15!GO:0000074;regulation of progression through cell cycle;5.72749749014496e-15!GO:0043412;biopolymer modification;7.82966190220241e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.09274952709242e-15!GO:0043285;biopolymer catabolic process;1.43412352163878e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.90558570143041e-14!GO:0005783;endoplasmic reticulum;1.90558570143041e-14!GO:0042775;organelle ATP synthesis coupled electron transport;2.34572517506054e-14!GO:0042773;ATP synthesis coupled electron transport;2.34572517506054e-14!GO:0030964;NADH dehydrogenase complex (quinone);3.33394332424207e-14!GO:0045271;respiratory chain complex I;3.33394332424207e-14!GO:0005747;mitochondrial respiratory chain complex I;3.33394332424207e-14!GO:0006605;protein targeting;3.94855164239877e-14!GO:0044432;endoplasmic reticulum part;5.1379403700512e-14!GO:0051082;unfolded protein binding;5.62566520558515e-14!GO:0009057;macromolecule catabolic process;5.81450380021909e-14!GO:0044248;cellular catabolic process;6.01086652135917e-14!GO:0051186;cofactor metabolic process;7.01416158444876e-14!GO:0006323;DNA packaging;7.44860388861123e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.24326783877481e-14!GO:0008134;transcription factor binding;1.23569474802371e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.34456709085504e-13!GO:0004386;helicase activity;3.3716890660844e-13!GO:0048193;Golgi vesicle transport;7.93968581122241e-13!GO:0006464;protein modification process;7.95248024180845e-13!GO:0015630;microtubule cytoskeleton;2.11086455928258e-12!GO:0003743;translation initiation factor activity;3.14796887634702e-12!GO:0006913;nucleocytoplasmic transport;4.23277027776956e-12!GO:0043687;post-translational protein modification;5.82405334330049e-12!GO:0016604;nuclear body;5.91393149134621e-12!GO:0006399;tRNA metabolic process;7.0926053309256e-12!GO:0030163;protein catabolic process;7.1958761147267e-12!GO:0005643;nuclear pore;7.3715893550892e-12!GO:0051169;nuclear transport;1.11706233334051e-11!GO:0000785;chromatin;1.22665108457376e-11!GO:0006366;transcription from RNA polymerase II promoter;1.37658798438627e-11!GO:0006413;translational initiation;2.07191099383435e-11!GO:0006364;rRNA processing;2.17244405621447e-11!GO:0009259;ribonucleotide metabolic process;2.89344151464013e-11!GO:0005794;Golgi apparatus;3.12975762409699e-11!GO:0008026;ATP-dependent helicase activity;3.32712085720304e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.87461285475204e-11!GO:0012501;programmed cell death;5.16080251930119e-11!GO:0006915;apoptosis;6.03726293155758e-11!GO:0016072;rRNA metabolic process;6.03726293155758e-11!GO:0006403;RNA localization;9.15568901210725e-11!GO:0065002;intracellular protein transport across a membrane;1.24736456731106e-10!GO:0050657;nucleic acid transport;1.25912715812496e-10!GO:0051236;establishment of RNA localization;1.25912715812496e-10!GO:0050658;RNA transport;1.25912715812496e-10!GO:0006163;purine nucleotide metabolic process;1.39365955051497e-10!GO:0065004;protein-DNA complex assembly;1.66656809866632e-10!GO:0005789;endoplasmic reticulum membrane;1.91188100538949e-10!GO:0008219;cell death;1.91188100538949e-10!GO:0016265;death;1.91188100538949e-10!GO:0006446;regulation of translational initiation;1.92999416155725e-10!GO:0006732;coenzyme metabolic process;2.11816979579909e-10!GO:0030532;small nuclear ribonucleoprotein complex;2.68751225504213e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.00242492227113e-10!GO:0006333;chromatin assembly or disassembly;4.07814332424089e-10!GO:0009055;electron carrier activity;4.13964239790406e-10!GO:0009150;purine ribonucleotide metabolic process;5.34892605115104e-10!GO:0016192;vesicle-mediated transport;5.75313390019136e-10!GO:0046930;pore complex;6.40765889588736e-10!GO:0006164;purine nucleotide biosynthetic process;1.20581961101943e-09!GO:0009260;ribonucleotide biosynthetic process;1.23722730724611e-09!GO:0008639;small protein conjugating enzyme activity;1.51609183015299e-09!GO:0000775;chromosome, pericentric region;1.62754575002246e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.10399304745506e-09!GO:0009141;nucleoside triphosphate metabolic process;2.68266129427082e-09!GO:0005819;spindle;2.6894973530447e-09!GO:0043566;structure-specific DNA binding;2.90272146269974e-09!GO:0004842;ubiquitin-protein ligase activity;3.006393914877e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.05910648740207e-09!GO:0016607;nuclear speck;3.68308639586039e-09!GO:0005815;microtubule organizing center;4.31365304180148e-09!GO:0005813;centrosome;4.38254859703967e-09!GO:0003712;transcription cofactor activity;4.49755745977869e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.49755745977869e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.49755745977869e-09!GO:0009152;purine ribonucleotide biosynthetic process;4.54131681862031e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.78459890323558e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.92013587136629e-09!GO:0004812;aminoacyl-tRNA ligase activity;5.92013587136629e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.92013587136629e-09!GO:0019787;small conjugating protein ligase activity;7.09772653595528e-09!GO:0006461;protein complex assembly;7.21956201179937e-09!GO:0007005;mitochondrion organization and biogenesis;1.01959064928282e-08!GO:0043038;amino acid activation;1.02098973032466e-08!GO:0006418;tRNA aminoacylation for protein translation;1.02098973032466e-08!GO:0043039;tRNA aminoacylation;1.02098973032466e-08!GO:0006261;DNA-dependent DNA replication;1.05700145661405e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.15554893086232e-08!GO:0051028;mRNA transport;1.19146252315932e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.35179118679694e-08!GO:0003697;single-stranded DNA binding;1.51241997715487e-08!GO:0016568;chromatin modification;1.70750791800108e-08!GO:0008565;protein transporter activity;1.72888528505851e-08!GO:0050794;regulation of cellular process;2.04032580747152e-08!GO:0046034;ATP metabolic process;2.398809508213e-08!GO:0016740;transferase activity;2.47441640535199e-08!GO:0000245;spliceosome assembly;2.53227530193952e-08!GO:0009060;aerobic respiration;2.74056007090324e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.0723050610537e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.0723050610537e-08!GO:0015986;ATP synthesis coupled proton transport;3.53196286056787e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.53196286056787e-08!GO:0017038;protein import;3.63140926560416e-08!GO:0019829;cation-transporting ATPase activity;5.06744391577501e-08!GO:0016881;acid-amino acid ligase activity;5.44083221837961e-08!GO:0005667;transcription factor complex;6.51365698235615e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.7249426406529e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.7249426406529e-08!GO:0016563;transcription activator activity;7.28811073789561e-08!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.46932893156871e-08!GO:0045333;cellular respiration;8.76560202823493e-08!GO:0005793;ER-Golgi intermediate compartment;1.37751471310171e-07!GO:0016779;nucleotidyltransferase activity;1.43722942362604e-07!GO:0048523;negative regulation of cellular process;1.52020618770493e-07!GO:0006334;nucleosome assembly;1.73210344765866e-07!GO:0009117;nucleotide metabolic process;1.91391052503314e-07!GO:0051188;cofactor biosynthetic process;2.1341235384893e-07!GO:0016787;hydrolase activity;2.18099157039326e-07!GO:0009056;catabolic process;2.45857667792116e-07!GO:0051329;interphase of mitotic cell cycle;2.69068210167187e-07!GO:0007051;spindle organization and biogenesis;3.16485399615468e-07!GO:0006754;ATP biosynthetic process;3.3625394956432e-07!GO:0006753;nucleoside phosphate metabolic process;3.3625394956432e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.50847755849037e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.50847755849037e-07!GO:0031497;chromatin assembly;3.86491935952114e-07!GO:0032446;protein modification by small protein conjugation;4.58815363600454e-07!GO:0005657;replication fork;5.66223416638304e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.73857896831807e-07!GO:0006099;tricarboxylic acid cycle;6.06804240717869e-07!GO:0046356;acetyl-CoA catabolic process;6.06804240717869e-07!GO:0045259;proton-transporting ATP synthase complex;7.67758125337422e-07!GO:0006793;phosphorus metabolic process;9.11169805983086e-07!GO:0006796;phosphate metabolic process;9.11169805983086e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.11169805983086e-07!GO:0016567;protein ubiquitination;9.63752639066568e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.01407750933671e-06!GO:0005768;endosome;1.12429430328587e-06!GO:0006084;acetyl-CoA metabolic process;1.19652499544144e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.65697433318423e-06!GO:0003724;RNA helicase activity;1.6746226680558e-06!GO:0000151;ubiquitin ligase complex;1.88463263872379e-06!GO:0005762;mitochondrial large ribosomal subunit;2.18226884826857e-06!GO:0000315;organellar large ribosomal subunit;2.18226884826857e-06!GO:0004298;threonine endopeptidase activity;2.22215272440649e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.25741713654322e-06!GO:0008094;DNA-dependent ATPase activity;2.2641520492108e-06!GO:0000075;cell cycle checkpoint;2.29543084941786e-06!GO:0045786;negative regulation of progression through cell cycle;2.32073698220494e-06!GO:0031324;negative regulation of cellular metabolic process;2.32644537527045e-06!GO:0051325;interphase;2.77553136653658e-06!GO:0003899;DNA-directed RNA polymerase activity;2.96950134960016e-06!GO:0042981;regulation of apoptosis;3.07244776101129e-06!GO:0048519;negative regulation of biological process;3.1585459242853e-06!GO:0006302;double-strand break repair;3.17715008476787e-06!GO:0003713;transcription coactivator activity;3.86224871393464e-06!GO:0043623;cellular protein complex assembly;3.87566658247814e-06!GO:0043067;regulation of programmed cell death;4.50635808537916e-06!GO:0016310;phosphorylation;4.50635808537916e-06!GO:0009109;coenzyme catabolic process;5.81089373742056e-06!GO:0009108;coenzyme biosynthetic process;6.09724337634788e-06!GO:0051170;nuclear import;6.42191683069849e-06!GO:0030120;vesicle coat;6.45917772942818e-06!GO:0030662;coated vesicle membrane;6.45917772942818e-06!GO:0051187;cofactor catabolic process;6.69994800853457e-06!GO:0006752;group transfer coenzyme metabolic process;8.33736232767034e-06!GO:0051427;hormone receptor binding;8.66022922262588e-06!GO:0009892;negative regulation of metabolic process;9.97532153028151e-06!GO:0016363;nuclear matrix;1.16732031793276e-05!GO:0003682;chromatin binding;1.21862450167733e-05!GO:0051168;nuclear export;1.34470487449126e-05!GO:0003924;GTPase activity;1.5867648083402e-05!GO:0000314;organellar small ribosomal subunit;1.61043399684151e-05!GO:0005763;mitochondrial small ribosomal subunit;1.61043399684151e-05!GO:0006606;protein import into nucleus;1.6909121716321e-05!GO:0003690;double-stranded DNA binding;1.73896425396902e-05!GO:0035257;nuclear hormone receptor binding;2.0087219763893e-05!GO:0044431;Golgi apparatus part;2.37078257742322e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.45417373620049e-05!GO:0043069;negative regulation of programmed cell death;2.4752480993578e-05!GO:0006613;cotranslational protein targeting to membrane;2.64617690432267e-05!GO:0044440;endosomal part;2.71632723873181e-05!GO:0010008;endosome membrane;2.71632723873181e-05!GO:0019222;regulation of metabolic process;2.93180009503568e-05!GO:0043066;negative regulation of apoptosis;3.06098776820981e-05!GO:0050789;regulation of biological process;3.33717029745058e-05!GO:0048475;coated membrane;3.48784107397448e-05!GO:0030117;membrane coat;3.48784107397448e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.90047198622365e-05!GO:0005788;endoplasmic reticulum lumen;4.1274328293197e-05!GO:0007088;regulation of mitosis;4.17386078519895e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.24064464348774e-05!GO:0015399;primary active transmembrane transporter activity;4.24064464348774e-05!GO:0008186;RNA-dependent ATPase activity;4.73316434162798e-05!GO:0005874;microtubule;5.11055772354793e-05!GO:0000776;kinetochore;5.26679075819481e-05!GO:0006916;anti-apoptosis;5.87885269263992e-05!GO:0004674;protein serine/threonine kinase activity;6.3697018588588e-05!GO:0005798;Golgi-associated vesicle;7.08541164353195e-05!GO:0003684;damaged DNA binding;7.56578315623528e-05!GO:0045454;cell redox homeostasis;7.73102441860664e-05!GO:0044452;nucleolar part;7.74684201732636e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;7.89727605613128e-05!GO:0007059;chromosome segregation;7.89727605613128e-05!GO:0019899;enzyme binding;8.640895787951e-05!GO:0043021;ribonucleoprotein binding;9.06760946710099e-05!GO:0006310;DNA recombination;9.23197845570015e-05!GO:0051246;regulation of protein metabolic process;0.000100803936919237!GO:0000786;nucleosome;0.000108600884212653!GO:0016481;negative regulation of transcription;0.000109215890646438!GO:0016491;oxidoreductase activity;0.000125701143721074!GO:0016859;cis-trans isomerase activity;0.000127760069795494!GO:0008654;phospholipid biosynthetic process;0.000128798158798093!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000142738961735148!GO:0003729;mRNA binding;0.000142738961735148!GO:0004004;ATP-dependent RNA helicase activity;0.00014488891167682!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000161659456568218!GO:0007093;mitotic cell cycle checkpoint;0.0001669544267697!GO:0006383;transcription from RNA polymerase III promoter;0.000172383134995849!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00017295875211164!GO:0031988;membrane-bound vesicle;0.000179127222154011!GO:0006402;mRNA catabolic process;0.00018104382041599!GO:0006626;protein targeting to mitochondrion;0.000183876228068214!GO:0016853;isomerase activity;0.000189746774661596!GO:0007017;microtubule-based process;0.000190814386605306!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000198403620731553!GO:0008033;tRNA processing;0.000200918852237229!GO:0016023;cytoplasmic membrane-bound vesicle;0.00021980482132739!GO:0005770;late endosome;0.00024444587681265!GO:0015980;energy derivation by oxidation of organic compounds;0.000277278186806291!GO:0009165;nucleotide biosynthetic process;0.000277388458205932!GO:0003678;DNA helicase activity;0.000278048943884544!GO:0006091;generation of precursor metabolites and energy;0.000288442369917922!GO:0000059;protein import into nucleus, docking;0.000298136909981758!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0003040369711507!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000312667958443241!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000317891562304068!GO:0006839;mitochondrial transport;0.00033297814221627!GO:0006401;RNA catabolic process;0.000361155757928697!GO:0005684;U2-dependent spliceosome;0.000425019247127778!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000454957162105086!GO:0000139;Golgi membrane;0.000475756923903851!GO:0006414;translational elongation;0.00049231240039616!GO:0008361;regulation of cell size;0.000492446607233348!GO:0007052;mitotic spindle organization and biogenesis;0.00052740256106872!GO:0005525;GTP binding;0.00055145916832356!GO:0006350;transcription;0.000577262511724581!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000577262511724581!GO:0030867;rough endoplasmic reticulum membrane;0.000609168836422152!GO:0032508;DNA duplex unwinding;0.000611566667540193!GO:0032392;DNA geometric change;0.000611566667540193!GO:0005637;nuclear inner membrane;0.000612299440179995!GO:0016049;cell growth;0.00063907317291594!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000659193688553635!GO:0043492;ATPase activity, coupled to movement of substances;0.000695328299675021!GO:0006352;transcription initiation;0.00070040296704917!GO:0004527;exonuclease activity;0.000701298995733344!GO:0005885;Arp2/3 protein complex;0.000732416673197576!GO:0005876;spindle microtubule;0.00073638788498102!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00076758022701027!GO:0043681;protein import into mitochondrion;0.00076758022701027!GO:0016564;transcription repressor activity;0.000780261593435953!GO:0008022;protein C-terminus binding;0.000791035347102305!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000806987833420049!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000843122113896374!GO:0033116;ER-Golgi intermediate compartment membrane;0.00090321865397941!GO:0031323;regulation of cellular metabolic process;0.000903662897113839!GO:0005769;early endosome;0.000917932299423979!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000956892934345879!GO:0019867;outer membrane;0.000965362260080318!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000979376951500262!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000979376951500262!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000979376951500262!GO:0045941;positive regulation of transcription;0.00102831208711575!GO:0016741;transferase activity, transferring one-carbon groups;0.00102831208711575!GO:0001558;regulation of cell growth;0.00107281572696321!GO:0005048;signal sequence binding;0.00108073113336256!GO:0043624;cellular protein complex disassembly;0.00108566740631497!GO:0031968;organelle outer membrane;0.0011410856804213!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00116956410299994!GO:0019843;rRNA binding;0.00120937941182747!GO:0007050;cell cycle arrest;0.00120937941182747!GO:0008168;methyltransferase activity;0.00125564002499759!GO:0006818;hydrogen transport;0.00133833645387197!GO:0031982;vesicle;0.00135924891250529!GO:0006612;protein targeting to membrane;0.00138174699906853!GO:0006289;nucleotide-excision repair;0.00138194166597877!GO:0015631;tubulin binding;0.00138777737506464!GO:0031072;heat shock protein binding;0.00139650278752461!GO:0051789;response to protein stimulus;0.00141475061930682!GO:0006986;response to unfolded protein;0.00141475061930682!GO:0051920;peroxiredoxin activity;0.00141694325338056!GO:0006268;DNA unwinding during replication;0.00146089589536524!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00164670463673581!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00164670463673581!GO:0046474;glycerophospholipid biosynthetic process;0.00170774958620644!GO:0015992;proton transport;0.00184313926521923!GO:0030880;RNA polymerase complex;0.00192300757537091!GO:0006284;base-excision repair;0.00192300757537091!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00193259179105553!GO:0000287;magnesium ion binding;0.00194701606196492!GO:0030176;integral to endoplasmic reticulum membrane;0.00194701606196492!GO:0031410;cytoplasmic vesicle;0.00199552856991805!GO:0051252;regulation of RNA metabolic process;0.00199831244592112!GO:0045893;positive regulation of transcription, DNA-dependent;0.00203566522684975!GO:0006220;pyrimidine nucleotide metabolic process;0.00203962704581646!GO:0051087;chaperone binding;0.00218427002575224!GO:0000922;spindle pole;0.00219758288184583!GO:0031252;leading edge;0.00223935964737191!GO:0043596;nuclear replication fork;0.00229146608765205!GO:0016272;prefoldin complex;0.00229146608765205!GO:0032984;macromolecular complex disassembly;0.00229746349095826!GO:0006270;DNA replication initiation;0.00240041849660111!GO:0008632;apoptotic program;0.00258147703846422!GO:0051052;regulation of DNA metabolic process;0.00259950750520387!GO:0000082;G1/S transition of mitotic cell cycle;0.0026393374192186!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00266029721648727!GO:0048500;signal recognition particle;0.00270748441015414!GO:0048471;perinuclear region of cytoplasm;0.0027843056114457!GO:0005773;vacuole;0.00316228217490897!GO:0000910;cytokinesis;0.00327920809406508!GO:0006892;post-Golgi vesicle-mediated transport;0.00339564773483078!GO:0000725;recombinational repair;0.00347462843841694!GO:0000724;double-strand break repair via homologous recombination;0.00347462843841694!GO:0004518;nuclease activity;0.00348301693123966!GO:0006405;RNA export from nucleus;0.00348301693123966!GO:0007010;cytoskeleton organization and biogenesis;0.00350042303809313!GO:0043241;protein complex disassembly;0.00357344701739913!GO:0006497;protein amino acid lipidation;0.00361208845970113!GO:0016301;kinase activity;0.00364514040908162!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00390065204835399!GO:0000428;DNA-directed RNA polymerase complex;0.00390065204835399!GO:0048468;cell development;0.00390624448561835!GO:0008312;7S RNA binding;0.00390876540222568!GO:0006891;intra-Golgi vesicle-mediated transport;0.0039961315704522!GO:0035258;steroid hormone receptor binding;0.00415309137283676!GO:0046489;phosphoinositide biosynthetic process;0.00419566706673177!GO:0031124;mRNA 3'-end processing;0.00426069558980156!GO:0005905;coated pit;0.00449101172597108!GO:0003702;RNA polymerase II transcription factor activity;0.00456456807458826!GO:0007006;mitochondrial membrane organization and biogenesis;0.00457660001873097!GO:0030663;COPI coated vesicle membrane;0.00470808638919319!GO:0030126;COPI vesicle coat;0.00470808638919319!GO:0016197;endosome transport;0.00493715687284042!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00503361388090336!GO:0043488;regulation of mRNA stability;0.00506825651456282!GO:0043487;regulation of RNA stability;0.00506825651456282!GO:0006611;protein export from nucleus;0.00530744836398052!GO:0032561;guanyl ribonucleotide binding;0.00541042140257764!GO:0019001;guanyl nucleotide binding;0.00541042140257764!GO:0042770;DNA damage response, signal transduction;0.00541203506387548!GO:0016251;general RNA polymerase II transcription factor activity;0.00557899348068099!GO:0010468;regulation of gene expression;0.00564215787326625!GO:0003714;transcription corepressor activity;0.00586084977893988!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00586084977893988!GO:0005741;mitochondrial outer membrane;0.00589132063972195!GO:0030521;androgen receptor signaling pathway;0.00597019188511797!GO:0050662;coenzyme binding;0.00604850636159107!GO:0030132;clathrin coat of coated pit;0.00610456940531999!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00610456940531999!GO:0065009;regulation of a molecular function;0.00616983675592255!GO:0004003;ATP-dependent DNA helicase activity;0.00634300073621127!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00655345632544792!GO:0045047;protein targeting to ER;0.00655345632544792!GO:0007346;regulation of progression through mitotic cell cycle;0.00678688903095084!GO:0044262;cellular carbohydrate metabolic process;0.00678827190020069!GO:0048487;beta-tubulin binding;0.00681753886491248!GO:0006650;glycerophospholipid metabolic process;0.00681753886491248!GO:0000209;protein polyubiquitination;0.00683426157896413!GO:0006506;GPI anchor biosynthetic process;0.00687351036309392!GO:0000049;tRNA binding;0.00701630932955119!GO:0031970;organelle envelope lumen;0.00705383654090479!GO:0000792;heterochromatin;0.00734202380879459!GO:0008637;apoptotic mitochondrial changes;0.00735238583305261!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00745224564756929!GO:0015002;heme-copper terminal oxidase activity;0.00745224564756929!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00745224564756929!GO:0004129;cytochrome-c oxidase activity;0.00745224564756929!GO:0000819;sister chromatid segregation;0.00745224564756929!GO:0000228;nuclear chromosome;0.00745224564756929!GO:0006376;mRNA splice site selection;0.00746198321872684!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00746198321872684!GO:0022411;cellular component disassembly;0.00776311680886947!GO:0005758;mitochondrial intermembrane space;0.00791385361193546!GO:0043189;H4/H2A histone acetyltransferase complex;0.00802427211212519!GO:0030137;COPI-coated vesicle;0.00814015712231185!GO:0031570;DNA integrity checkpoint;0.00819258662720786!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.00819991631659175!GO:0005832;chaperonin-containing T-complex;0.00823219149713763!GO:0048522;positive regulation of cellular process;0.00829073142152123!GO:0042802;identical protein binding;0.00835221091130232!GO:0008287;protein serine/threonine phosphatase complex;0.00841312658012259!GO:0006595;polyamine metabolic process;0.00841684007970805!GO:0003746;translation elongation factor activity;0.0084632290140604!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00859602631505563!GO:0043022;ribosome binding;0.00861583350480738!GO:0043601;nuclear replisome;0.00871727672479557!GO:0030894;replisome;0.00871727672479557!GO:0031577;spindle checkpoint;0.00889051066771954!GO:0008601;protein phosphatase type 2A regulator activity;0.00899224288138975!GO:0009116;nucleoside metabolic process;0.00912666329008451!GO:0006505;GPI anchor metabolic process;0.00912666329008451!GO:0019206;nucleoside kinase activity;0.00913252594819243!GO:0000070;mitotic sister chromatid segregation;0.00914076514285103!GO:0006338;chromatin remodeling;0.00914076514285103!GO:0008139;nuclear localization sequence binding;0.00931250277476869!GO:0006541;glutamine metabolic process;0.00931370318587343!GO:0005669;transcription factor TFIID complex;0.00944363157769851!GO:0032200;telomere organization and biogenesis;0.00960874531276775!GO:0000723;telomere maintenance;0.00960874531276775!GO:0030133;transport vesicle;0.00966359355019587!GO:0000152;nuclear ubiquitin ligase complex;0.00975300912961265!GO:0008408;3'-5' exonuclease activity;0.0100126226162209!GO:0003677;DNA binding;0.0107169744474654!GO:0042158;lipoprotein biosynthetic process;0.0116537835752289!GO:0031529;ruffle organization and biogenesis;0.0116559890567855!GO:0017166;vinculin binding;0.0118793098752213!GO:0043284;biopolymer biosynthetic process;0.0123622403055875!GO:0000323;lytic vacuole;0.0126170786338596!GO:0005764;lysosome;0.0126170786338596!GO:0005875;microtubule associated complex;0.012689749120871!GO:0032774;RNA biosynthetic process;0.0127902304131741!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0132371043730215!GO:0003711;transcription elongation regulator activity;0.0132566811958991!GO:0006144;purine base metabolic process;0.0133586552016013!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0137438584274779!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0137438584274779!GO:0030659;cytoplasmic vesicle membrane;0.0138727699295775!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0138727699295775!GO:0010257;NADH dehydrogenase complex assembly;0.0138727699295775!GO:0033108;mitochondrial respiratory chain complex assembly;0.0138727699295775!GO:0004722;protein serine/threonine phosphatase activity;0.0138835573852364!GO:0040008;regulation of growth;0.0138835573852364!GO:0006520;amino acid metabolic process;0.0139061804506169!GO:0035267;NuA4 histone acetyltransferase complex;0.0141227142765784!GO:0008180;signalosome;0.0141227142765784!GO:0031901;early endosome membrane;0.0143324487368968!GO:0045045;secretory pathway;0.0144239195888798!GO:0005869;dynactin complex;0.0144515290526151!GO:0009303;rRNA transcription;0.0144843940906799!GO:0006351;transcription, DNA-dependent;0.0147160500118467!GO:0009262;deoxyribonucleotide metabolic process;0.0147931258704392!GO:0008286;insulin receptor signaling pathway;0.0148820556416516!GO:0045892;negative regulation of transcription, DNA-dependent;0.0149343344374821!GO:0000159;protein phosphatase type 2A complex;0.0149343344374821!GO:0004532;exoribonuclease activity;0.0149343344374821!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0149343344374821!GO:0030518;steroid hormone receptor signaling pathway;0.0153528831642806!GO:0016584;nucleosome positioning;0.0155324476616212!GO:0046467;membrane lipid biosynthetic process;0.0157734866775216!GO:0030658;transport vesicle membrane;0.0160681220901583!GO:0031123;RNA 3'-end processing;0.0161919942344569!GO:0006378;mRNA polyadenylation;0.0164262026265458!GO:0016408;C-acyltransferase activity;0.0167685330151174!GO:0006672;ceramide metabolic process;0.0168629902392349!GO:0004680;casein kinase activity;0.0171311848746295!GO:0022890;inorganic cation transmembrane transporter activity;0.017242800430489!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0173449523632796!GO:0019752;carboxylic acid metabolic process;0.0180707807705293!GO:0007021;tubulin folding;0.0181189428111746!GO:0065007;biological regulation;0.0181189428111746!GO:0006740;NADPH regeneration;0.0182259688675409!GO:0000123;histone acetyltransferase complex;0.0182259688675409!GO:0006098;pentose-phosphate shunt;0.0182259688675409!GO:0031902;late endosome membrane;0.0184839203878987!GO:0046966;thyroid hormone receptor binding;0.0186435994455561!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0188071096191399!GO:0000339;RNA cap binding;0.0189921499430868!GO:0005791;rough endoplasmic reticulum;0.0192600222008767!GO:0008017;microtubule binding;0.0192675360084473!GO:0016407;acetyltransferase activity;0.0196503723528044!GO:0046519;sphingoid metabolic process;0.0196667846179167!GO:0006082;organic acid metabolic process;0.0197006894732431!GO:0009451;RNA modification;0.0199410285990861!GO:0042393;histone binding;0.0199731868292896!GO:0005663;DNA replication factor C complex;0.0205348480382449!GO:0005652;nuclear lamina;0.0207407726720931!GO:0048037;cofactor binding;0.0213999380242486!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.02184559200669!GO:0006695;cholesterol biosynthetic process;0.0219117932365409!GO:0000781;chromosome, telomeric region;0.0222616386607803!GO:0006367;transcription initiation from RNA polymerase II promoter;0.02268728163983!GO:0007243;protein kinase cascade;0.023023980169598!GO:0004576;oligosaccharyl transferase activity;0.0230310418231766!GO:0043154;negative regulation of caspase activity;0.0231490811920112!GO:0044450;microtubule organizing center part;0.0233276292297173!GO:0007040;lysosome organization and biogenesis;0.0235874347446917!GO:0000726;non-recombinational repair;0.0240703009203158!GO:0030660;Golgi-associated vesicle membrane;0.0244105713689883!GO:0006301;postreplication repair;0.0244551726096308!GO:0030125;clathrin vesicle coat;0.0244570969774463!GO:0030665;clathrin coated vesicle membrane;0.0244570969774463!GO:0046128;purine ribonucleoside metabolic process;0.0245036317012118!GO:0042278;purine nucleoside metabolic process;0.0245036317012118!GO:0008250;oligosaccharyl transferase complex;0.0259157215892391!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0260709670627232!GO:0044433;cytoplasmic vesicle part;0.0261988997099774!GO:0012506;vesicle membrane;0.0263620345439874!GO:0000077;DNA damage checkpoint;0.0264499564838915!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0264605513010432!GO:0009112;nucleobase metabolic process;0.0268719074815282!GO:0030118;clathrin coat;0.0272080669133261!GO:0006458;'de novo' protein folding;0.0280933543931353!GO:0051084;'de novo' posttranslational protein folding;0.0280933543931353!GO:0050681;androgen receptor binding;0.0280933543931353!GO:0051539;4 iron, 4 sulfur cluster binding;0.0280933543931353!GO:0006007;glucose catabolic process;0.0288346012499068!GO:0006360;transcription from RNA polymerase I promoter;0.0290624520972604!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0290624520972604!GO:0007264;small GTPase mediated signal transduction;0.0291466133203269!GO:0033673;negative regulation of kinase activity;0.0305749493605724!GO:0006469;negative regulation of protein kinase activity;0.0305749493605724!GO:0032259;methylation;0.0306946172672938!GO:0008320;protein transmembrane transporter activity;0.030704465308826!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0311744177471164!GO:0005862;muscle thin filament tropomyosin;0.0315379375845154!GO:0050790;regulation of catalytic activity;0.0319555931313006!GO:0000178;exosome (RNase complex);0.0324031170898953!GO:0000084;S phase of mitotic cell cycle;0.0324546769295666!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0326476916750837!GO:0030911;TPR domain binding;0.0326543808325887!GO:0007004;telomere maintenance via telomerase;0.0327885394285483!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0331166470932583!GO:0006509;membrane protein ectodomain proteolysis;0.0332512394774789!GO:0033619;membrane protein proteolysis;0.0332512394774789!GO:0006730;one-carbon compound metabolic process;0.0332512394774789!GO:0005784;translocon complex;0.0335999691536039!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0337396815868856!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0343357910359832!GO:0030384;phosphoinositide metabolic process;0.0343357910359832!GO:0016126;sterol biosynthetic process;0.0345419398605334!GO:0005680;anaphase-promoting complex;0.0346404240098763!GO:0008538;proteasome activator activity;0.034855031313339!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0351478625351918!GO:0016791;phosphoric monoester hydrolase activity;0.0352258125523911!GO:0031625;ubiquitin protein ligase binding;0.0352849007713148!GO:0030140;trans-Golgi network transport vesicle;0.0355579824275642!GO:0031371;ubiquitin conjugating enzyme complex;0.0358960608202262!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0362874735950353!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0362874735950353!GO:0022884;macromolecule transmembrane transporter activity;0.0362874735950353!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0362874735950353!GO:0046983;protein dimerization activity;0.0363542314808167!GO:0008426;protein kinase C inhibitor activity;0.03661403754332!GO:0031396;regulation of protein ubiquitination;0.0366983881098678!GO:0050178;phenylpyruvate tautomerase activity;0.036870552380775!GO:0046483;heterocycle metabolic process;0.0371394096014035!GO:0003887;DNA-directed DNA polymerase activity;0.0377419925630706!GO:0051287;NAD binding;0.0380202791327591!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0386338341539874!GO:0019201;nucleotide kinase activity;0.0389042024176555!GO:0000118;histone deacetylase complex;0.0389042024176555!GO:0045449;regulation of transcription;0.0392614214364983!GO:0001832;blastocyst growth;0.0396201037062092!GO:0004523;ribonuclease H activity;0.0398114545287302!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0399219471594424!GO:0007033;vacuole organization and biogenesis;0.0400415078898575!GO:0051320;S phase;0.0400415078898575!GO:0030145;manganese ion binding;0.0410219564777779!GO:0030522;intracellular receptor-mediated signaling pathway;0.0418733384223451!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0418733384223451!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0419704207172914!GO:0043414;biopolymer methylation;0.0426286431635172!GO:0008097;5S rRNA binding;0.0429621798042074!GO:0006778;porphyrin metabolic process;0.0431490580004316!GO:0033013;tetrapyrrole metabolic process;0.0431490580004316!GO:0031399;regulation of protein modification process;0.0431624896687642!GO:0008276;protein methyltransferase activity;0.0432225266788918!GO:0051348;negative regulation of transferase activity;0.0432225266788918!GO:0008234;cysteine-type peptidase activity;0.0442000193407158!GO:0048146;positive regulation of fibroblast proliferation;0.0450897216669559!GO:0001726;ruffle;0.0451804629823192!GO:0001836;release of cytochrome c from mitochondria;0.0455436287046941!GO:0030508;thiol-disulfide exchange intermediate activity;0.0456383715178413!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0457619241868481!GO:0006400;tRNA modification;0.0457799840400939!GO:0006275;regulation of DNA replication;0.0459346998222073!GO:0030503;regulation of cell redox homeostasis;0.0478211060325512!GO:0005732;small nucleolar ribonucleoprotein complex;0.0478653309851234!GO:0047485;protein N-terminus binding;0.0483469219181777!GO:0009124;nucleoside monophosphate biosynthetic process;0.0495889765890191!GO:0009123;nucleoside monophosphate metabolic process;0.0495889765890191!GO:0051297;centrosome organization and biogenesis;0.0496520294542248!GO:0031023;microtubule organizing center organization and biogenesis;0.0496520294542248
|sample_id=10708
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=lung
|top_motifs=PAX8:1.64518456319;LEF1_TCF7_TCF7L1,2:1.50395121218;ONECUT1,2:1.47976439114;E2F1..5:1.42454786383;PBX1:1.29812982798;HOX{A6,A7,B6,B7}:1.25397283837;TEF:1.1984755917;PITX1..3:1.1258469987;HSF1,2:1.12214464496;MYB:1.10192495458;bHLH_family:1.08737398384;AIRE:0.972203768671;CDX1,2,4:0.932613993893;EVI1:0.918249752651;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.91650729676;TOPORS:0.900979470353;HOX{A5,B5}:0.869730139511;FOXP1:0.867086322403;ZNF384:0.865832494298;TFDP1:0.863407253794;LHX3,4:0.859667447009;PPARG:0.822369305253;PAX4:0.819642290409;RBPJ:0.805443615555;PDX1:0.802522964614;NFY{A,B,C}:0.698047009815;FOXD3:0.62925893622;CDC5L:0.629022305107;PRRX1,2:0.614726610072;GFI1:0.612135895693;NKX6-1,2:0.609577775235;NRF1:0.588544687193;NKX2-3_NKX2-5:0.587182676193;ADNP_IRX_SIX_ZHX:0.567854490298;FOXM1:0.545573741548;STAT5{A,B}:0.536139831227;POU2F1..3:0.529507273738;RXR{A,B,G}:0.528083735672;EGR1..3:0.491967048005;RFX1:0.48434473499;OCT4_SOX2{dimer}:0.48056404927;ZNF143:0.475255913671;HES1:0.473086513256;POU1F1:0.468725431278;IKZF2:0.435134471597;NR6A1:0.433448501064;ZIC1..3:0.406419877715;FOXQ1:0.372996880763;UFEwm:0.359815208987;TEAD1:0.352534114666;NKX3-1:0.347252339363;FOX{I1,J2}:0.34720384568;DBP:0.34216951937;BREu{core}:0.322796226609;FOS_FOS{B,L1}_JUN{B,D}:0.286329963051;FOX{D1,D2}:0.283530964616;EN1,2:0.282292141214;PAX5:0.270869347236;FOXO1,3,4:0.267529774617;ZFP161:0.240917810469;RFX2..5_RFXANK_RFXAP:0.228548371797;ZBTB16:0.202634492715;CRX:0.187225621296;MTF1:0.145454677033;LMO2:0.139598253708;TP53:0.13945273617;POU6F1:0.136391853185;GATA4:0.132746892241;HNF4A_NR2F1,2:0.117514571983;VSX1,2:0.102891389395;ALX4:0.0865714803369;FOX{F1,F2,J1}:0.0842655861445;POU5F1:0.0791209126054;DMAP1_NCOR{1,2}_SMARC:0.0735476797332;HNF1A:0.0661962505928;REST:0.0496434576816;BACH2:0.0315990525005;NFE2:0.0295746740419;ELK1,4_GABP{A,B1}:0.0253568867025;FOSL2:0.00803831804375;FOXA2:0.00479811733526;GZF1:-0.0171568109588;XCPE1{core}:-0.019991076206;SRF:-0.0261169123268;SOX{8,9,10}:-0.0287732204815;YY1:-0.05439781065;FOXP3:-0.0609810346057;ALX1:-0.0625067932885;FOXL1:-0.068532347525;TFAP2{A,C}:-0.07410429374;NKX2-1,4:-0.0748507677433;ARID5B:-0.0825128288989;SOX2:-0.0840713213661;TLX2:-0.105596557149;HIC1:-0.111021022293;HLF:-0.1291059065;TFAP2B:-0.138139084093;GTF2A1,2:-0.163088848437;IKZF1:-0.163531989158;MTE{core}:-0.179205481835;BPTF:-0.186508004084;MYBL2:-0.187331505945;SP1:-0.209886026724;NFE2L2:-0.218867495165;STAT2,4,6:-0.226527741124;CEBPA,B_DDIT3:-0.230567930558;ZBTB6:-0.233590814998;ATF5_CREB3:-0.238331025025;GCM1,2:-0.240974844237;KLF4:-0.261322819137;ZEB1:-0.264217009611;TAL1_TCF{3,4,12}:-0.266886944464;GTF2I:-0.268817528773;AR:-0.271629550941;NR3C1:-0.277484471299;HBP1_HMGB_SSRP1_UBTF:-0.288320578883;MYOD1:-0.289839202745;RUNX1..3:-0.296585578159;MZF1:-0.297462917932;ESR1:-0.307066438633;TLX1..3_NFIC{dimer}:-0.309284223927;TBX4,5:-0.316412358983;AHR_ARNT_ARNT2:-0.327932233191;CUX2:-0.33085666699;SPIB:-0.33114184585;HOXA9_MEIS1:-0.337762478344;PAX3,7:-0.339475907583;NFE2L1:-0.341875035142;ATF4:-0.345689588672;HOX{A4,D4}:-0.348261623112;MED-1{core}:-0.351040573148;RREB1:-0.36721247928;NFKB1_REL_RELA:-0.415633222324;SNAI1..3:-0.422768501611;NR5A1,2:-0.440520635629;GFI1B:-0.456513206127;PRDM1:-0.462213800379;IRF7:-0.507731582814;RORA:-0.507763039437;NR1H4:-0.513349860518;POU3F1..4:-0.520491555678;NHLH1,2:-0.531815242609;ELF1,2,4:-0.534761359144;SOX17:-0.540805690977;NFIL3:-0.552732034737;PAX2:-0.568600720625;XBP1:-0.571036592034;SOX5:-0.575205160379;GATA6:-0.578175483545;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.582410054184;EP300:-0.584350578793;ATF2:-0.597589014466;NFATC1..3:-0.603953371349;NKX3-2:-0.622730975865;MEF2{A,B,C,D}:-0.655468858059;STAT1,3:-0.675497351786;GLI1..3:-0.682620740796;ETS1,2:-0.687724053376;SPI1:-0.734910546624;EBF1:-0.742438365655;JUN:-0.757177184838;PATZ1:-0.758889629984;TFAP4:-0.770585951253;MAZ:-0.771084993123;RXRA_VDR{dimer}:-0.815101973906;NFIX:-0.81642575775;NKX2-2,8:-0.819151729031;T:-0.820451155132;TBP:-0.828009073625;NANOG{mouse}:-0.828803284095;IRF1,2:-0.860226045094;TFCP2:-0.89214343469;CREB1:-0.895032231;PAX1,9:-0.926793191532;TGIF1:-0.9277195692;MAFB:-0.931201679091;NANOG:-0.933118317913;HAND1,2:-0.958533338458;MYFfamily:-0.962072478502;ZNF423:-1.06149052181;FOXN1:-1.09186724299;HMGA1,2:-1.10409866433;ZNF238:-1.17141466109;SREBF1,2:-1.24141715121;ESRRA:-1.26466460241;ATF6:-1.42097328935;SMAD1..7,9:-1.44725523851;HIF1A:-1.51181959697;ZNF148:-1.53537634206;SPZ1:-1.55330825742;PAX6:-1.7141582357;HMX1:-2.50280428201
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10708-109H6;search_select_hide=table117:FF:10708-109H6
}}
}}

Latest revision as of 14:34, 3 June 2020

Name:alveolar cell carcinoma cell line:SW 1573
Species:Human (Homo sapiens)
Library ID:CNhs11838
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexfemale
age44
cell typepneumocyte
cell lineSW 1573
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005820
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11838 CAGE DRX007825 DRR008697
Accession ID Hg19

Library idBAMCTSS
CNhs11838 DRZ000122 DRZ001507
Accession ID Hg38

Library idBAMCTSS
CNhs11838 DRZ011472 DRZ012857
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.255
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.532
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.109
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0779
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.123
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.101
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular1.276
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.111
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.53
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.109
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0423
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.563
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.147
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.268
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.33
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0214
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11838

Jaspar motifP-value
MA0002.20.0201
MA0003.10.0189
MA0004.10.655
MA0006.10.666
MA0007.10.368
MA0009.10.421
MA0014.10.486
MA0017.10.409
MA0018.20.186
MA0019.10.337
MA0024.12.35471e-6
MA0025.10.772
MA0027.10.807
MA0028.10.0706
MA0029.10.633
MA0030.10.197
MA0031.10.734
MA0035.20.473
MA0038.10.288
MA0039.20.905
MA0040.10.436
MA0041.10.361
MA0042.10.582
MA0043.10.0141
MA0046.10.0912
MA0047.20.918
MA0048.10.00642
MA0050.11.75509e-7
MA0051.11.07786e-5
MA0052.10.0351
MA0055.10.00354
MA0057.10.736
MA0058.10.826
MA0059.10.214
MA0060.10.00237
MA0061.10.0083
MA0062.20.32
MA0065.20.268
MA0066.10.356
MA0067.10.342
MA0068.10.604
MA0069.10.343
MA0070.10.681
MA0071.10.932
MA0072.10.0873
MA0073.10.592
MA0074.10.882
MA0076.10.669
MA0077.10.242
MA0078.10.201
MA0079.20.161
MA0080.29.12134e-11
MA0081.10.0332
MA0083.10.583
MA0084.10.451
MA0087.10.457
MA0088.10.198
MA0090.10.228
MA0091.10.093
MA0092.10.431
MA0093.10.594
MA0099.20.0317
MA0100.10.0076
MA0101.10.0413
MA0102.20.00174
MA0103.10.759
MA0104.20.102
MA0105.10.0211
MA0106.10.683
MA0107.10.00408
MA0108.21.64882e-4
MA0111.10.461
MA0112.20.177
MA0113.10.255
MA0114.10.602
MA0115.10.535
MA0116.10.0557
MA0117.10.634
MA0119.10.622
MA0122.10.186
MA0124.10.361
MA0125.10.997
MA0131.10.22
MA0135.10.312
MA0136.11.082e-8
MA0137.20.0391
MA0138.20.208
MA0139.10.326
MA0140.10.898
MA0141.10.776
MA0142.10.618
MA0143.10.383
MA0144.10.00641
MA0145.10.173
MA0146.10.379
MA0147.10.112
MA0148.10.768
MA0149.10.165
MA0150.10.214
MA0152.10.299
MA0153.10.433
MA0154.10.0222
MA0155.10.014
MA0156.18.38264e-7
MA0157.10.376
MA0159.10.529
MA0160.10.309
MA0162.10.155
MA0163.10.178
MA0164.10.569
MA0258.10.31
MA0259.10.271



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11838

Novel motifP-value
10.702
100.943
1000.168
1010.529
1020.754
1030.779
1040.505
1050.832
1060.00262
1070.258
1080.546
1090.491
110.796
1100.82
1110.258
1120.331
1130.682
1140.628
1150.849
1160.967
1170.982
1180.519
1190.344
120.952
1200.0584
1210.787
1220.589
1230.148
1240.195
1250.223
1260.25
1270.708
1280.0288
1290.998
130.719
1300.917
1310.29
1320.322
1330.19
1340.968
1350.0139
1360.0808
1370.174
1380.539
1390.629
140.799
1400.663
1410.801
1420.56
1430.606
1440.949
1450.617
1460.131
1470.229
1480.886
1490.0649
150.352
1500.973
1510.811
1520.342
1530.106
1540.51
1550.664
1560.491
1570.624
1580.407
1590.307
160.858
1600.916
1610.274
1620.858
1630.115
1640.331
1650.995
1660.454
1670.0391
1680.0713
1690.932
170.88
180.256
190.691
20.432
200.0646
210.06
220.261
230.0603
240.515
250.733
260.148
270.28
280.682
290.609
30.662
300.222
310.207
320.0168
330.642
340.14
350.909
360.949
370.291
380.471
390.807
40.325
400.269
410.277
420.397
430.223
440.107
450.0153
460.821
470.619
480.717
490.363
50.0516
500.932
510.798
520.0285
530.844
540.92
550.903
560.858
570.13
580.226
590.432
60.221
600.0442
610.914
620.396
630.944
640.724
650.113
660.16
670.828
680.902
690.643
70.725
700.248
710.934
720.0027
730.478
740.409
750.663
760.915
770.119
780.437
790.2
80.172
800.525
810.605
820.352
830.805
840.152
850.0555
860.414
870.955
880.599
890.0595
90.217
900.267
910.034
920.249
930.362
940.245
950.873
960.984
970.447
980.755
990.24



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11838


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0000322 (pneumocyte)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1325 (bronchus cancer)
3905 (lung carcinoma)
3908 (non-small cell lung carcinoma)
3910 (lung adenocarcinoma)
3904 (bronchogenic carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0004821 (pulmonary alveolus epithelium)
0004903 (bronchoalveolar duct junction)
0000479 (tissue)
0000058 (duct)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0003914 (epithelial tube)
0007499 (epithelial sac)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000487 (simple squamous epithelium)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0003215 (alveolus)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0009856 (sac)
0010368 (pulmonary lobule)
0009911 (lobule)
0002299 (alveolus of lung)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
0006524 (alveolar system)
0008874 (pulmonary acinus)
0002169 (alveolar sac)
0004894 (alveolar wall)
0002173 (alveolar duct)
0002186 (bronchiole)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0102061 (bronchogenic carcinoma cell sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102058 (non-small cell lung cancer cell sample)
0102057 (lung adenocarcinoma cell sample)
0102060 (bronchioalveolar carcinoma cell sample)
0104802 (bronchioloalveolar carcinoma cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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