FF:11285-116I7: Difference between revisions

Revision as of 17:45, 29 June 2012

Name:	Smooth Muscle Cells - Carotid, donor1
Species:	Human (Homo sapiens)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	carotid artery
dev stage	NA
sex	unknown
age	NA
cell type	smooth muscle cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	2435
catalog number	custom
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.202
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0608
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.221
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.638
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.214
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.413
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.344
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.371
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.534
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.413
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0244
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0562
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.291
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.214
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.507
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.509
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.291
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.291
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11087

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.723
MA0003.1	MA0003.1	0.295
MA0004.1	MA0004.1	0.532
MA0006.1	MA0006.1	0.416
MA0007.1	MA0007.1	0.209
MA0009.1	MA0009.1	0.226
MA0014.1	MA0014.1	0.834
MA0017.1	MA0017.1	0.526
MA0018.2	MA0018.2	0.0298
MA0019.1	MA0019.1	0.157
MA0024.1	MA0024.1	0.484
MA0025.1	MA0025.1	0.521
MA0027.1	MA0027.1	0.867
MA0028.1	MA0028.1	0.488
MA0029.1	MA0029.1	0.798
MA0030.1	MA0030.1	0.892
MA0031.1	MA0031.1	0.497
MA0035.2	MA0035.2	0.726
MA0038.1	MA0038.1	0.624
MA0039.2	MA0039.2	0.88
MA0040.1	MA0040.1	0.496
MA0041.1	MA0041.1	0.384
MA0042.1	MA0042.1	0.572
MA0043.1	MA0043.1	0.222
MA0046.1	MA0046.1	0.281
MA0047.2	MA0047.2	0.886
MA0048.1	MA0048.1	0.242
MA0050.1	MA0050.1	0.19
MA0051.1	MA0051.1	0.826
MA0052.1	MA0052.1	0.354
MA0055.1	MA0055.1	0.675
MA0057.1	MA0057.1	0.426
MA0058.1	MA0058.1	0.339
MA0059.1	MA0059.1	0.483
MA0060.1	MA0060.1	0.262
MA0061.1	MA0061.1	0.816
MA0062.2	MA0062.2	0.00511
MA0065.2	MA0065.2	0.0661
MA0066.1	MA0066.1	0.804
MA0067.1	MA0067.1	0.104
MA0068.1	MA0068.1	0.281
MA0069.1	MA0069.1	0.695
MA0070.1	MA0070.1	0.731
MA0071.1	MA0071.1	0.952
MA0072.1	MA0072.1	0.773
MA0073.1	MA0073.1	0.884
MA0074.1	MA0074.1	0.393
MA0076.1	MA0076.1	0.454
MA0077.1	MA0077.1	0.69
MA0078.1	MA0078.1	0.799
MA0079.2	MA0079.2	0.199
MA0080.2	MA0080.2	1.24228e-5
MA0081.1	MA0081.1	0.264
MA0083.1	MA0083.1	0.00962
MA0084.1	MA0084.1	0.664
MA0087.1	MA0087.1	0.704
MA0088.1	MA0088.1	0.528
MA0090.1	MA0090.1	0.00274
MA0091.1	MA0091.1	0.267
MA0092.1	MA0092.1	0.524
MA0093.1	MA0093.1	0.586
MA0099.2	MA0099.2	2.69868e-9
MA0100.1	MA0100.1	0.16
MA0101.1	MA0101.1	0.537
MA0102.2	MA0102.2	0.347
MA0103.1	MA0103.1	0.00133
MA0104.2	MA0104.2	0.246
MA0105.1	MA0105.1	0.508
MA0106.1	MA0106.1	0.587
MA0107.1	MA0107.1	0.83
MA0108.2	MA0108.2	6.71568e-7
MA0111.1	MA0111.1	0.0176
MA0112.2	MA0112.2	0.668
MA0113.1	MA0113.1	0.608
MA0114.1	MA0114.1	0.17
MA0115.1	MA0115.1	0.743
MA0116.1	MA0116.1	0.613
MA0117.1	MA0117.1	0.528
MA0119.1	MA0119.1	0.472
MA0122.1	MA0122.1	0.708
MA0124.1	MA0124.1	0.841
MA0125.1	MA0125.1	0.756
MA0131.1	MA0131.1	0.84
MA0135.1	MA0135.1	0.37
MA0136.1	MA0136.1	3.45129e-4
MA0137.2	MA0137.2	0.298
MA0138.2	MA0138.2	0.665
MA0139.1	MA0139.1	0.663
MA0140.1	MA0140.1	0.588
MA0141.1	MA0141.1	0.77
MA0142.1	MA0142.1	0.57
MA0143.1	MA0143.1	0.347
MA0144.1	MA0144.1	0.995
MA0145.1	MA0145.1	0.485
MA0146.1	MA0146.1	0.207
MA0147.1	MA0147.1	0.403
MA0148.1	MA0148.1	1
MA0149.1	MA0149.1	0.655
MA0150.1	MA0150.1	0.258
MA0152.1	MA0152.1	0.468
MA0153.1	MA0153.1	0.166
MA0154.1	MA0154.1	0.947
MA0155.1	MA0155.1	0.224
MA0156.1	MA0156.1	0.00594
MA0157.1	MA0157.1	0.557
MA0159.1	MA0159.1	0.39
MA0160.1	MA0160.1	0.53
MA0162.1	MA0162.1	0.237
MA0163.1	MA0163.1	0.382
MA0164.1	MA0164.1	0.436
MA0258.1	MA0258.1	0.775
MA0259.1	MA0259.1	0.938

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11087

Novel motif	Logo	P-value
1	1	0.131
10	10	0.0811
100	100	0.327
101	101	0.0949
102	102	0.15
103	103	0.884
104	104	0.236
105	105	0.734
106	106	0.757
107	107	0.284
108	108	0.465
109	109	0.665
11	11	0.816
110	110	0.607
111	111	0.0026
112	112	0.361
113	113	0.0086
114	114	0.491
115	115	0.906
116	116	0.0623
117	117	0.435
118	118	0.25
119	119	0.084
12	12	0.437
120	120	0.977
121	121	0.695
122	122	0.846
123	123	0.00349
124	124	0.857
125	125	0.498
126	126	0.549
127	127	0.656
128	128	0.856
129	129	0.403
13	13	0.147
130	130	0.0241
131	131	0.382
132	132	0.64
133	133	0.152
134	134	0.267
135	135	0.832
136	136	0.413
137	137	0.122
138	138	0.273
139	139	0.445
14	14	0.63
140	140	0.0289
141	141	0.0481
142	142	0.916
143	143	0.373
144	144	0.447
145	145	0.487
146	146	0.143
147	147	0.226
148	148	0.0273
149	149	0.156
15	15	0.477
150	150	0.412
151	151	0.801
152	152	0.0541
153	153	0.527
154	154	0.536
155	155	0.0712
156	156	0.769
157	157	0.493
158	158	0.00139
159	159	0.299
16	16	0.627
160	160	0.625
161	161	0.867
162	162	0.809
163	163	0.963
164	164	0.824
165	165	0.53
166	166	0.66
167	167	0.155
168	168	0.598
169	169	0.215
17	17	0.795
18	18	0.405
19	19	0.253
2	2	0.135
20	20	0.221
21	21	0.589
22	22	0.237
23	23	0.865
24	24	0.511
25	25	0.0786
26	26	0.561
27	27	0.691
28	28	0.0473
29	29	0.731
3	3	0.495
30	30	0.0685
31	31	0.863
32	32	0.00107
33	33	0.954
34	34	0.261
35	35	0.713
36	36	0.139
37	37	0.878
38	38	0.43
39	39	0.281
4	4	0.61
40	40	0.452
41	41	0.476
42	42	0.772
43	43	0.797
44	44	0.297
45	45	0.329
46	46	0.857
47	47	0.731
48	48	0.832
49	49	0.131
5	5	0.841
50	50	0.371
51	51	0.944
52	52	0.96
53	53	0.187
54	54	0.976
55	55	0.588
56	56	0.69
57	57	0.627
58	58	0.176
59	59	0.232
6	6	0.635
60	60	0.498
61	61	0.384
62	62	0.208
63	63	0.868
64	64	0.722
65	65	0.726
66	66	0.804
67	67	0.776
68	68	0.0538
69	69	0.642
7	7	0.187
70	70	0.983
71	71	0.523
72	72	0.523
73	73	0.03
74	74	0.836
75	75	0.988
76	76	0.476
77	77	0.126
78	78	0.0796
79	79	0.196
8	8	0.763
80	80	0.584
81	81	0.401
82	82	0.485
83	83	0.576
84	84	0.718
85	85	0.929
86	86	0.919
87	87	0.0294
88	88	0.125
89	89	0.248
9	9	0.154
90	90	0.13
91	91	0.965
92	92	0.858
93	93	0.485
94	94	0.451
95	95	0.928
96	96	0.196
97	97	0.611
98	98	0.444
99	99	0.00564

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11087

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000171 human smooth muscle cell of the carotid artery sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000055 (non-terminally differentiated cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0000034 (stem cell)
0000680 (muscle precursor cell)
0002321 (embryonic cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000056 (myoblast)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0000222 (mesodermal cell)
0002596 (smooth muscle cell of the carotid artery)
0000355 (multi-potent skeletal muscle stem cell)
0000514 (smooth muscle myoblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001134 (skeletal muscle tissue)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000926 (mesoderm)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000025 (tube)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000480 (anatomical group)
0000923 (germ layer)
0003914 (epithelial tube)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0000477 (anatomical cluster)
0000481 (multi-tissue structure)
0000467 (anatomical system)
0001062 (anatomical entity)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0005291 (embryonic tissue)
0003509 (arterial blood vessel)
0004573 (systemic artery)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0001981 (blood vessel)
0002049 (vasculature)
0000486 (multilaminar epithelium)
0007500 (epithelial tube open at both ends)
0003104 (mesenchyme)
0005256 (trunk mesenchyme)
0006598 (presumptive structure)
0007798 (vascular system)
0001015 (musculature)
0002532 (epiblast (generic))
0005396 (carotid artery segment)
0002329 (somite)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0003077 (paraxial mesoderm)
0004290 (dermomyotome)
0009142 (entire embryonic mesenchyme)
0003081 (lateral plate mesoderm)
0001009 (circulatory system)
0006603 (presumptive mesoderm)
0003082 (myotome)
0004872 (splanchnic layer of lateral plate mesoderm)
0006965 (vascular cord)
0003059 (presomitic mesoderm)
0007282 (presumptive segmental plate)
0009618 (trunk paraxial mesoderm)
0007285 (presumptive paraxial mesoderm)

FF: FANTOM5
NA

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 6: / Line 6: @@
 |created_by=
 |creation_date=
+|datafreeze_phase=1
 |def=
 |expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!1.85!183.92!OSR1;;chr8:55370487..55370503,+!p1@SOX17!1.77!57.59!SOX17;;chr8:25902876..25902936,-!p1@EBF2!1.73!52.19!EBF2;;chr9:132427972..132428056,+!p1@PRRX2!1.62!52.50!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.62!40.41!PRRX2;;chr4:174451370..174451387,-!p1@HAND2!1.57!35.96!HAND2;;chr1:170632285..170632309,+!p1@PRRX1!1.56!39.46!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.53!103.42!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.50!41.05!PRRX1;;chr18:19749386..19749404,+!p2@GATA6!1.43!36.91!GATA6;;chr6:34204921..34204939,+!p3@HMGA1!1.42!727.09!HMGA1;;chr11:46299199..46299233,+!p1@CREB3L1!1.38!114.23!CREB3L1;;chr2:239756739..239756755,+!p2@TWIST2!1.37!37.55!TWIST2;;chr11:46299539..46299620,+!p2@CREB3L1!1.33!33.73!CREB3L1;;chr18:19749541..19749557,+!p1@GATA6!1.31!60.14!GATA6;;chr15:67430351..67430366,+!p10@SMAD3!1.24!16.23!SMAD3;;chr4:81118647..81118666,+!p1@PRDM8!1.22!20.68!PRDM8;;chr11:65687362..65687436,+!p3@DRAP1!1.21!69.05!DRAP1;;chr20:6748325..6748352,+!p1@BMP2!1.20!21.32!BMP2;;chr16:86600426..86600441,+!p1@FOXC2!1.17!34.05!FOXC2;;chr1:170633262..170633285,+!p3@PRRX1!1.17!15.91!PRRX1;;chr1:170632115..170632136,+!p9@PRRX1!1.15!13.05!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.15!13.05!HAND2;;chr3:25470156..25470227,+!p2@RARB!1.12!12.09!RARB;;chr12:66218255..66218304,+!p3@HMGA2!1.10!31.50!HMGA2;;chr10:64576105..64576133,-!p1@EGR2!1.09!23.55!EGR2;;chr11:65667884..65667895,-!p2@FOSL1!1.07!41.68!FOSL1;;chr1:170632959..170632987,+!p4@PRRX1!1.07!11.77!PRRX1;;chr19:47523058..47523114,+!p1@NPAS1!1.04!9.86!NPAS1;;chr3:25469815..25469866,+!p3@RARB!1.04!9.86!RARB;;chr19:13134772..13134822,+!p2@NFIX!1.03!14.32!NFIX;;chr19:13134457..13134462,+!p5@NFIX!1.02!17.18!NFIX;;chr1:170632723..170632739,+!p8@PRRX1!1.02!9.55!PRRX1;;chr11:65686732..65686756,+!p2@DRAP1!1.01!39.78!DRAP1;;chr17:41622765..41622821,-!p2@ETV4!0.99!13.68!ETV4;;chr11:46299443..46299459,+!p4@CREB3L1!0.98!8.59!CREB3L1;;chr1:170632477..170632506,+!p6@PRRX1!0.98!8.59!PRRX1;;chr6:34204672..34204692,+!p1@HMGA1!0.97!971.79!HMGA1;;chr11:65686802..65686818,+!p6@DRAP1!0.97!14.64!DRAP1;;chr19:45260775..45260838,+!p5@BCL3!0.97!10.82!BCL3;;chr11:65667846..65667868,-!p1@FOSL1!0.94!211.29!FOSL1;;chr6:10412600..10412637,-!p1@TFAP2A!0.94!13.05!TFAP2A;;chr11:65687222..65687240,+!p7@DRAP1!0.92!9.55!DRAP1;;chr1:170633058..170633084,+!p5@PRRX1!0.92!7.32!PRRX1;;chr2:102091566..102091581,-!p1@RFX8!0.92!7.32!RFX8;;chr2:19558327..19558334,-!p2@OSR1!0.92!7.32!OSR1;;chr12:66218598..66218645,+!p2@HMGA2!0.91!34.05!HMGA2;;chr17:1959369..1959388,+!p2@HIC1!0.91!19.41!HIC1;;chr16:86544113..86544145,+!p1@FOXF1!0.89!8.59!FOXF1;;chr17:59477233..59477263,+!p1@TBX2!0.88!21.32!TBX2;;chr15:96869114..96869160,+!p11@NR2F2!0.88!9.23!NR2F2;;chr15:67458491..67458505,+!p18@SMAD3!0.87!6.36!SMAD3;;chr1:170632137..170632172,+!p10@PRRX1!0.87!6.36!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.87!6.36!KDM5D;;chr12:124873357..124873401,-!p1@NCOR2!0.86!77.01!NCOR2;;chr12:53614115..53614154,-!p1@RARG!0.85!34.37!RARG;;chr19:46801639..46801699,+!p1@HIF3A!0.85!6.05!HIF3A;;chr1:170632439..170632465,+!p11@PRRX1!0.85!6.05!PRRX1;;chr18:19749353..19749367,+!p4@GATA6!0.85!6.05!GATA6;;chr7:19157248..19157268,-!p1@TWIST1!0.84!17.18!TWIST1;;chr15:67418119..67418162,+!p5@SMAD3!0.84!6.68!SMAD3;;chr5:72744445..72744466,-!p2@FOXD1!0.83!9.86!FOXD1;;chr15:67430381..67430396,+!p21@SMAD3!0.83!5.73!SMAD3;;chr16:86600870..86600921,+!p2@FOXC2!0.83!5.73!FOXC2;;chr2:66662281..66662308,+!p1@MEIS1!0.82!20.68!MEIS1;;chr8:106330656..106330684,+!p1@ZFPM2!0.82!15.59!ZFPM2;;chr1:158969752..158969780,+!p6@IFI16!0.82!10.18!IFI16;;chr11:65687243..65687276,+!p8@DRAP1!0.81!7.64!DRAP1;;chr1:170632028..170632043,+!p20@PRRX1!0.81!5.41!PRRX1;;chr15:67418177..67418204,+!p9@SMAD3!0.81!5.41!SMAD3;;chr7:27142290..27142310,-!p1@HOXA2!0.81!5.41!HOXA2;;chr7:35293685..35293718,-!p1@TBX20!0.81!5.41!TBX20;;chr2:66662396..66662407,+!p4@MEIS1!0.81!5.41!MEIS1;;chr4:174451350..174451363,-!p3@HAND2!0.81!5.41!HAND2;;chr17:59477275..59477286,+!p3@TBX2!0.80!7.32!TBX2;;chr6:10415276..10415341,-!p2@TFAP2A!0.80!6.68!TFAP2A;;chr18:53068911..53068935,-!p4@TCF4!0.80!6.05!TCF4;;chr6:34204973..34204990,+!p4@HMGA1!0.78!72.87!HMGA1;;chr11:65687158..65687216,+!p4@DRAP1!0.78!31.50!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!0.78!7.64!HMGA2;;chr16:54320101..54320125,-!p4@IRX3!0.78!7.32!IRX3;;chr5:92918919..92918942,+!p1@NR2F1!0.77!23.87!NR2F1;;chr3:25469724..25469773,+!p1@RARB!0.77!7.32!RARB;;chr3:128206762..128206781,-!p2@GATA2!0.76!32.77!GATA2;;chr14:24837368..24837401,+!p1@NFATC4!0.76!12.09!NFATC4;;chr17:41622925..41622976,-!p3@ETV4!0.76!7.32!ETV4;;chrY:2803415..2803468,+!p1@ZFY!0.76!4.77!ZFY;;chr2:66662249..66662267,+!p2@MEIS1!0.75!19.41!MEIS1;;chr1:8938709..8938720,-!p3@ENO1!0.74!242.15!ENO1;;chr7:14029283..14029311,-!p1@ETV1!0.74!26.73!ETV1;;chr1:170632250..170632277,+!p7@PRRX1!0.74!4.45!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.74!4.45!PRRX1;;chr19:13106214..13106382,+!p1@NFIX!0.73!114.23!NFIX;;chr5:72744594..72744609,-!p1@FOXD1!0.73!22.27!FOXD1;;chr15:96874244..96874259,+!p5@NR2F2!0.73!11.46!NR2F2;;chr17:41623009..41623053,-!p4@ETV4!0.72!7.32!ETV4;;chr15:96876966..96877017,+!p12@NR2F2!0.72!6.36!NR2F2;;chr11:46299186..46299195,+!p3@CREB3L1!0.72!4.77!CREB3L1;;chr19:3366625..3366629,+!p4@NFIC!0.71!6.36!NFIC;;chr17:41622731..41622764,-!p5@ETV4!0.71!4.14!ETV4;;chr7:27153454..27153469,-!p2@HOXA3!0.71!4.14!HOXA3;;chr19:50542543..50542548,+!p2@ZNF473!0.71!4.14!ZNF473;;chr1:164528410..164528428,+!p1@PBX1!0.70!33.73!PBX1;;chr15:96874012..96874042,+!p2@NR2F2!0.69!39.78!NR2F2;;chr6:34205372..34205412,+!p5@HMGA1!0.69!22.59!HMGA1;;chr1:8938766..8938774,-!p2@ENO1!0.68!300.07!ENO1;;chr19:50432453..50432468,+!p1@ATF5!0.68!245.65!ATF5;;chr19:45250948..45250998,+!p3@BCL3!0.68!10.50!BCL3;;chr1:170632683..170632696,+!p12@PRRX1!0.68!3.82!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.68!3.82!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!0.68!3.82!EBF3;;chr19:13135386..13135435,+!p4@NFIX!0.68!3.82!NFIX;;chr9:16705069..16705086,-!p3@BNC2!0.68!3.82!BNC2;;chr15:96874145..96874166,+!p7@NR2F2!0.67!7.64!NR2F2;;chr2:200322654..200322707,-!p2@SATB2!0.67!5.73!SATB2;;chr4:81104958..81104981,+!p5@PRDM8!0.67!4.45!PRDM8;;chr15:96869511..96869525,+!p16@NR2F2!0.67!4.14!NR2F2;;chr5:92918956..92918969,+!p4@NR2F1!0.67!4.14!NR2F1;;chr19:45251943..45252006,+!p1@BCL3!0.66!109.14!BCL3;;chr2:113993052..113993097,-!p2@PAX8!0.66!8.91!PAX8;;chr2:121493425..121493474,+!p1@GLI2!0.66!8.59!GLI2;;chr2:121493492..121493537,+!p2@GLI2!0.66!6.36!GLI2;;chr8:106330696..106330719,+!p2@ZFPM2!0.66!4.77!ZFPM2;;chr15:96873921..96873946,+!p1@NR2F2!0.65!115.83!NR2F2;;chr10:77161504..77161530,-!p1@ZNF503!0.65!53.78!ZNF503;;chr1:170632051..170632081,+!p16@PRRX1!0.65!3.50!PRRX1;;chr22:38598086..38598105,+!p1@MAFF!0.64!42.00!MAFF;;chr3:141087393..141087426,+!p3@ZBTB38!0.64!15.27!ZBTB38;;chr1:221053049..221053075,+!p3@HLX!0.64!6.36!HLX;;chr16:54320158..54320200,-!p5@IRX3!0.64!5.09!IRX3;;chr15:67418047..67418093,+!p4@SMAD3!0.64!4.45!SMAD3;;chr11:65686952..65686975,+!p5@DRAP1!0.62!20.68!DRAP1;;chr15:96869255..96869291,+!p6@NR2F2!0.62!6.36!NR2F2;;chr15:67458861..67458879,+!p17@SMAD3!0.62!3.18!SMAD3;;chr18:19749504..19749515,+!p5@GATA6!0.62!3.18!GATA6;;chr2:102091144..102091183,-!p2@RFX8!0.62!3.18!RFX8;;chr2:66662510..66662521,+!p6@MEIS1!0.62!3.18!MEIS1;;chr8:128747846..128747860,+!p15@MYC!0.62!3.18!MYC;;chr15:67358163..67358192,+!p1@SMAD3!0.61!86.55!SMAD3;;chr2:85360499..85360598,+!p1@TCF7L1!0.61!20.37!TCF7L1;;chr18:19749517..19749531,+!p3@GATA6!0.61!6.05!GATA6;;chr19:58987786..58987805,+!p3@ZNF446!0.61!4.77!ZNF446;;chr11:65686776..65686787,+!p9@DRAP1!0.61!3.82!DRAP1;;chr1:8938736..8938756,-!p1@ENO1!0.60!4013.82!ENO1;;chr19:3366570..3366619,+!p1@NFIC!0.60!115.83!NFIC;;chr19:44037546..44037594,+!p1@ZNF575!0.60!7.00!ZNF575;;chr9:16870659..16870675,-!p2@BNC2!0.60!3.82!BNC2;;chr16:88519669..88519726,+!p1@ZFPM1!0.59!31.82!ZFPM1;;chr16:31076332..31076388,-!p3@ZNF668!0.59!2.86!ZNF668;;chr16:51185318..51185348,-!p2@SALL1!0.59!2.86!SALL1;;chr11:46333934..46333963,+!p5@CREB3L1!0.59!2.86!CREB3L1;;chr3:25469875..25469893,+!p5@RARB!0.59!2.86!RARB;;chr7:1577899..1577943,+!p3@MAFK!0.59!2.86!MAFK;;chr1:119530493..119530572,-!p1@TBX15!0.59!2.86!TBX15;;chr1:170632867..170632878,+!p21@PRRX1!0.59!2.86!PRRX1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.58!38.50!TAX1BP3;;chr21:47063625..47063658,+!p1@PCBP3!0.58!14.64!PCBP3;;chr17:41623692..41623715,-!p1@ETV4!0.58!14.32!ETV4;;chr2:200323414..200323455,-!p1@SATB2!0.57!6.68!SATB2;;chr4:81104895..81104920,+!p2@PRDM8!0.57!4.45!PRDM8;;chr4:81104985..81105005,+!p4@PRDM8!0.57!3.50!PRDM8;;chr6:10412392..10412409,-!p4@TFAP2A!0.57!3.18!TFAP2A;;chr17:3571863..3571881,-!p1@TAX1BP3!0.56!233.56!TAX1BP3;;chr12:57504975..57505019,-!p2@STAT6!0.56!13.05!STAT6;;chr19:52074502..52074587,+!p1@ZNF175!0.56!11.46!ZNF175;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.56!2.86!GLIS1;;chr2:28616337..28616355,+!p2@FOSL2!0.55!57.28!FOSL2;;chr2:172949484..172949522,+!p1@DLX1!0.55!2.55!DLX1;;chr10:64578528..64578542,-!p5@EGR2!0.55!2.55!EGR2;;chr15:80843484..80843499,+!p5@ARNT2!0.55!2.55!ARNT2;;chr16:51185172..51185197,-!p1@SALL1!0.55!2.55!SALL1;;chr8:55370720..55370733,+!p2@SOX17!0.55!2.55!SOX17;;chr1:170632108..170632114,+!p29@PRRX1!0.55!2.55!PRRX1;;chr1:170632310..170632321,+!p15@PRRX1!0.55!2.55!PRRX1;;chr19:1863591..1863611,-!p2@KLF16!0.54!29.91!KLF16;;chr19:45251805..45251840,+!p4@BCL3!0.54!9.55!BCL3;;chr7:19157043..19157088,-!p2@TWIST1!0.54!7.32!TWIST1;;chr17:59477197..59477212,+!p2@TBX2!0.54!4.77!TBX2;;chr21:36260295..36260310,-!p3@RUNX1!0.54!4.45!RUNX1;;chr20:51588873..51588953,+!p1@TSHZ2!0.54!3.50!TSHZ2;;chr7:44143925..44143970,+!p1@AEBP1!0.53!68.41!AEBP1;;chr12:66218836..66218888,+!p1@HMGA2!0.53!28.64!HMGA2;;chr17:1958388..1958404,+!p1@HIC1!0.53!19.41!HIC1;;chr20:42543441..42543497,+!p1@TOX2!0.53!13.36!TOX2;;chr1:164528616..164528660,+!p5@PBX1!0.53!5.73!PBX1;;chr3:71114066..71114114,-!p1@FOXP1!0.52!61.41!FOXP1;;chr6:19837592..19837621,+!p1@ID4!0.52!17.82!ID4;;chr1:1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JARID2;;chr1:8483821..8483845,-!p11@RERE!0.17!1.91!RERE;;chr5:132299572..132299623,-!p6@AFF4!0.17!1.59!AFF4;;chr15:42749722..42749739,-!p2@ZFP106!0.17!1.59!ZFP106;;chr16:30621615..30621660,-!p2@ZNF689!0.17!1.59!ZNF689;;chr17:20492136..20492165,+!p1@MEIS3P2!0.17!1.27!MEIS3P2;;chr14:105886300..105886316,+!p2@MTA1!0.17!1.27!MTA1;;chr10:114710083..114710092,+!p8@TCF7L2!0.17!0.95!TCF7L2;;chr11:57103283..57103290,-!p3@SSRP1!0.17!0.95!SSRP1;;chr13:41635373..41635386,-!p10@ELF1!0.17!0.95!ELF1;;chr8:128747661..128747703,+!p6@MYC!0.17!0.95!MYC;;chr19:45254529..45254561,+!p10@BCL3!0.17!0.95!BCL3;;chr20:44600199..44600219,-!p3@ZNF335!0.17!0.95!ZNF335;;chr4:1873216..1873238,+!p5@WHSC1!0.17!0.95!WHSC1;;chr7:77428248..77428259,+!p5@PHTF2!0.17!0.64!PHTF2;;chr12:72056749..72056767,+!p6@THAP2!0.17!0.64!THAP2;;chr14:35872414..35872425,-!p7@NFKBIA!0.17!0.64!NFKBIA;;chr1:61548118..61548129,+!p9@NFIA!0.17!0.64!NFIA;;chr1:78445097..78445110,-!p7@FUBP1!0.17!0.64!FUBP1;;chr18:3452133..3452150,+!p19@TGIF1!0.17!0.64!TGIF1;;chr12:10875831..10876025,-!p1@CSDA!0.16!107.55!CSDA;;chr10:51565188..51565236,+!p1@NCOA4!0.16!96.73!NCOA4;;chr22:41697520..41697613,+!p1@ZC3H7B!0.16!74.46!ZC3H7B;;chr1:156470556..156470643,-!p1@MEF2D!0.16!51.87!MEF2D;;chr17:17740287..17740307,-!p1@SREBF1!0.16!33.73!SREBF1;;chr6:33168427..33168457,-!p1@RXRB!0.16!28.64!RXRB;;chr17:47492236..47492251,-!p1@PHB!0.16!17.50!PHB;;chr8:146052918..146052975,+!p1@ZNF7!0.16!14.00!ZNF7;;chr1:151254738..151254787,+!p1@ZNF687!0.16!11.46!ZNF687;;chr20:18269151..18269212,+!p1@ZNF133!0.16!10.50!ZNF133;;chr14:74253865..74253917,-!p2@C14orf43!0.16!7.64!C14orf43;;chr18:45457004..45457043,-!p3@SMAD2!0.16!5.09!SMAD2;;chr18:22932080..22932170,-!p1@ZNF521!0.16!4.77!ZNF521;;chr5:88179017..88179046,-!p2@MEF2C!0.16!4.45!MEF2C;;chr9:115818951..115819011,-!p1@ZFP37!0.16!3.18!ZFP37;;chr19:53193790..53193821,-!p3@ZNF83!0.16!3.18!ZNF83;;chr6:126240380..126240430,+!p2@NCOA7!0.16!2.55!NCOA7;;chr19:20150301..20150321,-!p1@ZNF682!0.16!2.55!ZNF682;;chr4:121843844..121843904,-!p1@PRDM5!0.16!2.23!PRDM5;;chr1:61548374..61548415,+!p4@NFIA!0.16!1.59!NFIA;;chr10:21823381..21823399,+!p4@MLLT10!0.16!1.27!MLLT10;;chr7:86781858..86781879,+!p3@DMTF1!0.16!1.27!DMTF1;;chr3:71355163..71355209,-!p5@FOXP1!0.16!0.95!FOXP1;;chr16:67881588..67881612,-!p2@CENPT!0.16!0.95!CENPT;;chr15:83953397..83953425,-!p1@BNC1!0.16!0.64!BNC1;;chr17:38504601..38504634,+!p9@RARA!0.16!0.64!RARA;;chr18:56530595..56530606,+!p11@ZNF532!0.16!0.64!ZNF532;;chr7:74072282..74072287,+!p9@GTF2I!0.16!0.64!GTF2I;;chr19:47422934..47422958,+!p4@ARHGAP35!0.16!0.64!ARHGAP35;;chr1:47903709..47903764,+!p1@BC169308!0.16!0.64!FOXD2;;chr9:125667739..125667770,-!p4@RC3H2!0.16!0.64!RC3H2;;chr22:21355865..21355886,-!p5@THAP7!0.16!0.64!THAP7;;chr3:12330560..12330579,+!p1@PPARG!0.16!0.64!PPARG;;chr11:47237922..47237964,+!p4@DDB2!0.16!0.64!DDB2;;chr12:53845879..53845894,+!p1@PCBP2!0.15!900.52!PCBP2;;chr16:29817789..29817838,+!p2@MAZ!0.15!16.86!MAZ;;chr19:4065485..4065546,-!p2@ZBTB7A!0.15!10.82!ZBTB7A;;chr11:46722560..46722595,+!p1@ZNF408!0.15!6.05!ZNF408;;chr8:57123815..57123867,-!p1@PLAG1!0.15!4.45!PLAG1;;chr18:5296001..5296045,-!p1@ZFP161!0.15!4.14!ZFP161;;chr3:71179746..71179783,-!p7@FOXP1!0.15!3.50!FOXP1;;

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FF:11285-116I7: Difference between revisions

From FANTOM5_SSTAR

Revision as of 17:45, 29 June 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0