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|has_quality=
|has_quality=
|id=FF:10708-109H6
|id=FF:10708-109H6
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0102060;;FF:0104802
|is_a=EFO:0002091;;FF:0000210;;FF:0102060;;FF:0104802
|is_obsolete=
|name=alveolar cell carcinoma cell line:SW 1573
|name=alveolar cell carcinoma cell line:SW 1573
|namespace=FANTOM5
|namespace=FANTOM5
Line 77: Line 78:
|sample_tissue=lung
|sample_tissue=lung
|top_motifs=PAX8:1.64518456319;LEF1_TCF7_TCF7L1,2:1.50395121218;ONECUT1,2:1.47976439114;E2F1..5:1.42454786383;PBX1:1.29812982798;HOX{A6,A7,B6,B7}:1.25397283837;TEF:1.1984755917;PITX1..3:1.1258469987;HSF1,2:1.12214464496;MYB:1.10192495458;bHLH_family:1.08737398384;AIRE:0.972203768671;CDX1,2,4:0.932613993893;EVI1:0.918249752651;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.91650729676;TOPORS:0.900979470353;HOX{A5,B5}:0.869730139511;FOXP1:0.867086322403;ZNF384:0.865832494298;TFDP1:0.863407253794;LHX3,4:0.859667447009;PPARG:0.822369305253;PAX4:0.819642290409;RBPJ:0.805443615555;PDX1:0.802522964614;NFY{A,B,C}:0.698047009815;FOXD3:0.62925893622;CDC5L:0.629022305107;PRRX1,2:0.614726610072;GFI1:0.612135895693;NKX6-1,2:0.609577775235;NRF1:0.588544687193;NKX2-3_NKX2-5:0.587182676193;ADNP_IRX_SIX_ZHX:0.567854490298;FOXM1:0.545573741548;STAT5{A,B}:0.536139831227;POU2F1..3:0.529507273738;RXR{A,B,G}:0.528083735672;EGR1..3:0.491967048005;RFX1:0.48434473499;OCT4_SOX2{dimer}:0.48056404927;ZNF143:0.475255913671;HES1:0.473086513256;POU1F1:0.468725431278;IKZF2:0.435134471597;NR6A1:0.433448501064;ZIC1..3:0.406419877715;FOXQ1:0.372996880763;UFEwm:0.359815208987;TEAD1:0.352534114666;NKX3-1:0.347252339363;FOX{I1,J2}:0.34720384568;DBP:0.34216951937;BREu{core}:0.322796226609;FOS_FOS{B,L1}_JUN{B,D}:0.286329963051;FOX{D1,D2}:0.283530964616;EN1,2:0.282292141214;PAX5:0.270869347236;FOXO1,3,4:0.267529774617;ZFP161:0.240917810469;RFX2..5_RFXANK_RFXAP:0.228548371797;ZBTB16:0.202634492715;CRX:0.187225621296;MTF1:0.145454677033;LMO2:0.139598253708;TP53:0.13945273617;POU6F1:0.136391853185;GATA4:0.132746892241;HNF4A_NR2F1,2:0.117514571983;VSX1,2:0.102891389395;ALX4:0.0865714803369;FOX{F1,F2,J1}:0.0842655861445;POU5F1:0.0791209126054;DMAP1_NCOR{1,2}_SMARC:0.0735476797332;HNF1A:0.0661962505928;REST:0.0496434576816;BACH2:0.0315990525005;NFE2:0.0295746740419;ELK1,4_GABP{A,B1}:0.0253568867025;FOSL2:0.00803831804375;FOXA2:0.00479811733526;GZF1:-0.0171568109588;XCPE1{core}:-0.019991076206;SRF:-0.0261169123268;SOX{8,9,10}:-0.0287732204815;YY1:-0.05439781065;FOXP3:-0.0609810346057;ALX1:-0.0625067932885;FOXL1:-0.068532347525;TFAP2{A,C}:-0.07410429374;NKX2-1,4:-0.0748507677433;ARID5B:-0.0825128288989;SOX2:-0.0840713213661;TLX2:-0.105596557149;HIC1:-0.111021022293;HLF:-0.1291059065;TFAP2B:-0.138139084093;GTF2A1,2:-0.163088848437;IKZF1:-0.163531989158;MTE{core}:-0.179205481835;BPTF:-0.186508004084;MYBL2:-0.187331505945;SP1:-0.209886026724;NFE2L2:-0.218867495165;STAT2,4,6:-0.226527741124;CEBPA,B_DDIT3:-0.230567930558;ZBTB6:-0.233590814998;ATF5_CREB3:-0.238331025025;GCM1,2:-0.240974844237;KLF4:-0.261322819137;ZEB1:-0.264217009611;TAL1_TCF{3,4,12}:-0.266886944464;GTF2I:-0.268817528773;AR:-0.271629550941;NR3C1:-0.277484471299;HBP1_HMGB_SSRP1_UBTF:-0.288320578883;MYOD1:-0.289839202745;RUNX1..3:-0.296585578159;MZF1:-0.297462917932;ESR1:-0.307066438633;TLX1..3_NFIC{dimer}:-0.309284223927;TBX4,5:-0.316412358983;AHR_ARNT_ARNT2:-0.327932233191;CUX2:-0.33085666699;SPIB:-0.33114184585;HOXA9_MEIS1:-0.337762478344;PAX3,7:-0.339475907583;NFE2L1:-0.341875035142;ATF4:-0.345689588672;HOX{A4,D4}:-0.348261623112;MED-1{core}:-0.351040573148;RREB1:-0.36721247928;NFKB1_REL_RELA:-0.415633222324;SNAI1..3:-0.422768501611;NR5A1,2:-0.440520635629;GFI1B:-0.456513206127;PRDM1:-0.462213800379;IRF7:-0.507731582814;RORA:-0.507763039437;NR1H4:-0.513349860518;POU3F1..4:-0.520491555678;NHLH1,2:-0.531815242609;ELF1,2,4:-0.534761359144;SOX17:-0.540805690977;NFIL3:-0.552732034737;PAX2:-0.568600720625;XBP1:-0.571036592034;SOX5:-0.575205160379;GATA6:-0.578175483545;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.582410054184;EP300:-0.584350578793;ATF2:-0.597589014466;NFATC1..3:-0.603953371349;NKX3-2:-0.622730975865;MEF2{A,B,C,D}:-0.655468858059;STAT1,3:-0.675497351786;GLI1..3:-0.682620740796;ETS1,2:-0.687724053376;SPI1:-0.734910546624;EBF1:-0.742438365655;JUN:-0.757177184838;PATZ1:-0.758889629984;TFAP4:-0.770585951253;MAZ:-0.771084993123;RXRA_VDR{dimer}:-0.815101973906;NFIX:-0.81642575775;NKX2-2,8:-0.819151729031;T:-0.820451155132;TBP:-0.828009073625;NANOG{mouse}:-0.828803284095;IRF1,2:-0.860226045094;TFCP2:-0.89214343469;CREB1:-0.895032231;PAX1,9:-0.926793191532;TGIF1:-0.9277195692;MAFB:-0.931201679091;NANOG:-0.933118317913;HAND1,2:-0.958533338458;MYFfamily:-0.962072478502;ZNF423:-1.06149052181;FOXN1:-1.09186724299;HMGA1,2:-1.10409866433;ZNF238:-1.17141466109;SREBF1,2:-1.24141715121;ESRRA:-1.26466460241;ATF6:-1.42097328935;SMAD1..7,9:-1.44725523851;HIF1A:-1.51181959697;ZNF148:-1.53537634206;SPZ1:-1.55330825742;PAX6:-1.7141582357;HMX1:-2.50280428201
|top_motifs=PAX8:1.64518456319;LEF1_TCF7_TCF7L1,2:1.50395121218;ONECUT1,2:1.47976439114;E2F1..5:1.42454786383;PBX1:1.29812982798;HOX{A6,A7,B6,B7}:1.25397283837;TEF:1.1984755917;PITX1..3:1.1258469987;HSF1,2:1.12214464496;MYB:1.10192495458;bHLH_family:1.08737398384;AIRE:0.972203768671;CDX1,2,4:0.932613993893;EVI1:0.918249752651;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.91650729676;TOPORS:0.900979470353;HOX{A5,B5}:0.869730139511;FOXP1:0.867086322403;ZNF384:0.865832494298;TFDP1:0.863407253794;LHX3,4:0.859667447009;PPARG:0.822369305253;PAX4:0.819642290409;RBPJ:0.805443615555;PDX1:0.802522964614;NFY{A,B,C}:0.698047009815;FOXD3:0.62925893622;CDC5L:0.629022305107;PRRX1,2:0.614726610072;GFI1:0.612135895693;NKX6-1,2:0.609577775235;NRF1:0.588544687193;NKX2-3_NKX2-5:0.587182676193;ADNP_IRX_SIX_ZHX:0.567854490298;FOXM1:0.545573741548;STAT5{A,B}:0.536139831227;POU2F1..3:0.529507273738;RXR{A,B,G}:0.528083735672;EGR1..3:0.491967048005;RFX1:0.48434473499;OCT4_SOX2{dimer}:0.48056404927;ZNF143:0.475255913671;HES1:0.473086513256;POU1F1:0.468725431278;IKZF2:0.435134471597;NR6A1:0.433448501064;ZIC1..3:0.406419877715;FOXQ1:0.372996880763;UFEwm:0.359815208987;TEAD1:0.352534114666;NKX3-1:0.347252339363;FOX{I1,J2}:0.34720384568;DBP:0.34216951937;BREu{core}:0.322796226609;FOS_FOS{B,L1}_JUN{B,D}:0.286329963051;FOX{D1,D2}:0.283530964616;EN1,2:0.282292141214;PAX5:0.270869347236;FOXO1,3,4:0.267529774617;ZFP161:0.240917810469;RFX2..5_RFXANK_RFXAP:0.228548371797;ZBTB16:0.202634492715;CRX:0.187225621296;MTF1:0.145454677033;LMO2:0.139598253708;TP53:0.13945273617;POU6F1:0.136391853185;GATA4:0.132746892241;HNF4A_NR2F1,2:0.117514571983;VSX1,2:0.102891389395;ALX4:0.0865714803369;FOX{F1,F2,J1}:0.0842655861445;POU5F1:0.0791209126054;DMAP1_NCOR{1,2}_SMARC:0.0735476797332;HNF1A:0.0661962505928;REST:0.0496434576816;BACH2:0.0315990525005;NFE2:0.0295746740419;ELK1,4_GABP{A,B1}:0.0253568867025;FOSL2:0.00803831804375;FOXA2:0.00479811733526;GZF1:-0.0171568109588;XCPE1{core}:-0.019991076206;SRF:-0.0261169123268;SOX{8,9,10}:-0.0287732204815;YY1:-0.05439781065;FOXP3:-0.0609810346057;ALX1:-0.0625067932885;FOXL1:-0.068532347525;TFAP2{A,C}:-0.07410429374;NKX2-1,4:-0.0748507677433;ARID5B:-0.0825128288989;SOX2:-0.0840713213661;TLX2:-0.105596557149;HIC1:-0.111021022293;HLF:-0.1291059065;TFAP2B:-0.138139084093;GTF2A1,2:-0.163088848437;IKZF1:-0.163531989158;MTE{core}:-0.179205481835;BPTF:-0.186508004084;MYBL2:-0.187331505945;SP1:-0.209886026724;NFE2L2:-0.218867495165;STAT2,4,6:-0.226527741124;CEBPA,B_DDIT3:-0.230567930558;ZBTB6:-0.233590814998;ATF5_CREB3:-0.238331025025;GCM1,2:-0.240974844237;KLF4:-0.261322819137;ZEB1:-0.264217009611;TAL1_TCF{3,4,12}:-0.266886944464;GTF2I:-0.268817528773;AR:-0.271629550941;NR3C1:-0.277484471299;HBP1_HMGB_SSRP1_UBTF:-0.288320578883;MYOD1:-0.289839202745;RUNX1..3:-0.296585578159;MZF1:-0.297462917932;ESR1:-0.307066438633;TLX1..3_NFIC{dimer}:-0.309284223927;TBX4,5:-0.316412358983;AHR_ARNT_ARNT2:-0.327932233191;CUX2:-0.33085666699;SPIB:-0.33114184585;HOXA9_MEIS1:-0.337762478344;PAX3,7:-0.339475907583;NFE2L1:-0.341875035142;ATF4:-0.345689588672;HOX{A4,D4}:-0.348261623112;MED-1{core}:-0.351040573148;RREB1:-0.36721247928;NFKB1_REL_RELA:-0.415633222324;SNAI1..3:-0.422768501611;NR5A1,2:-0.440520635629;GFI1B:-0.456513206127;PRDM1:-0.462213800379;IRF7:-0.507731582814;RORA:-0.507763039437;NR1H4:-0.513349860518;POU3F1..4:-0.520491555678;NHLH1,2:-0.531815242609;ELF1,2,4:-0.534761359144;SOX17:-0.540805690977;NFIL3:-0.552732034737;PAX2:-0.568600720625;XBP1:-0.571036592034;SOX5:-0.575205160379;GATA6:-0.578175483545;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.582410054184;EP300:-0.584350578793;ATF2:-0.597589014466;NFATC1..3:-0.603953371349;NKX3-2:-0.622730975865;MEF2{A,B,C,D}:-0.655468858059;STAT1,3:-0.675497351786;GLI1..3:-0.682620740796;ETS1,2:-0.687724053376;SPI1:-0.734910546624;EBF1:-0.742438365655;JUN:-0.757177184838;PATZ1:-0.758889629984;TFAP4:-0.770585951253;MAZ:-0.771084993123;RXRA_VDR{dimer}:-0.815101973906;NFIX:-0.81642575775;NKX2-2,8:-0.819151729031;T:-0.820451155132;TBP:-0.828009073625;NANOG{mouse}:-0.828803284095;IRF1,2:-0.860226045094;TFCP2:-0.89214343469;CREB1:-0.895032231;PAX1,9:-0.926793191532;TGIF1:-0.9277195692;MAFB:-0.931201679091;NANOG:-0.933118317913;HAND1,2:-0.958533338458;MYFfamily:-0.962072478502;ZNF423:-1.06149052181;FOXN1:-1.09186724299;HMGA1,2:-1.10409866433;ZNF238:-1.17141466109;SREBF1,2:-1.24141715121;ESRRA:-1.26466460241;ATF6:-1.42097328935;SMAD1..7,9:-1.44725523851;HIF1A:-1.51181959697;ZNF148:-1.53537634206;SPZ1:-1.55330825742;PAX6:-1.7141582357;HMX1:-2.50280428201
|xref=
}}
}}

Revision as of 18:47, 27 June 2012


Name:alveolar cell carcinoma cell line:SW 1573
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexfemale
age44
cell typepneumocyte
cell lineSW 1573
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.255
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.532
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.109
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0779
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.123
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.101
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular1.276
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.111
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.53
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.109
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0423
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.563
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.147
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.268
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.33
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0214
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11838

Jaspar motifP-value
MA0002.20.0201
MA0003.10.0189
MA0004.10.655
MA0006.10.666
MA0007.10.368
MA0009.10.421
MA0014.10.486
MA0017.10.409
MA0018.20.186
MA0019.10.337
MA0024.12.35471e-6
MA0025.10.772
MA0027.10.807
MA0028.10.0706
MA0029.10.633
MA0030.10.197
MA0031.10.734
MA0035.20.473
MA0038.10.288
MA0039.20.905
MA0040.10.436
MA0041.10.361
MA0042.10.582
MA0043.10.0141
MA0046.10.0912
MA0047.20.918
MA0048.10.00642
MA0050.11.75509e-7
MA0051.11.07786e-5
MA0052.10.0351
MA0055.10.00354
MA0057.10.736
MA0058.10.826
MA0059.10.214
MA0060.10.00237
MA0061.10.0083
MA0062.20.32
MA0065.20.268
MA0066.10.356
MA0067.10.342
MA0068.10.604
MA0069.10.343
MA0070.10.681
MA0071.10.932
MA0072.10.0873
MA0073.10.592
MA0074.10.882
MA0076.10.669
MA0077.10.242
MA0078.10.201
MA0079.20.161
MA0080.29.12134e-11
MA0081.10.0332
MA0083.10.583
MA0084.10.451
MA0087.10.457
MA0088.10.198
MA0090.10.228
MA0091.10.093
MA0092.10.431
MA0093.10.594
MA0099.20.0317
MA0100.10.0076
MA0101.10.0413
MA0102.20.00174
MA0103.10.759
MA0104.20.102
MA0105.10.0211
MA0106.10.683
MA0107.10.00408
MA0108.21.64882e-4
MA0111.10.461
MA0112.20.177
MA0113.10.255
MA0114.10.602
MA0115.10.535
MA0116.10.0557
MA0117.10.634
MA0119.10.622
MA0122.10.186
MA0124.10.361
MA0125.10.997
MA0131.10.22
MA0135.10.312
MA0136.11.082e-8
MA0137.20.0391
MA0138.20.208
MA0139.10.326
MA0140.10.898
MA0141.10.776
MA0142.10.618
MA0143.10.383
MA0144.10.00641
MA0145.10.173
MA0146.10.379
MA0147.10.112
MA0148.10.768
MA0149.10.165
MA0150.10.214
MA0152.10.299
MA0153.10.433
MA0154.10.0222
MA0155.10.014
MA0156.18.38264e-7
MA0157.10.376
MA0159.10.529
MA0160.10.309
MA0162.10.155
MA0163.10.178
MA0164.10.569
MA0258.10.31
MA0259.10.271



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11838

Novel motifP-value
10.702
100.943
1000.168
1010.529
1020.754
1030.779
1040.505
1050.832
1060.00262
1070.258
1080.546
1090.491
110.796
1100.82
1110.258
1120.331
1130.682
1140.628
1150.849
1160.967
1170.982
1180.519
1190.344
120.952
1200.0584
1210.787
1220.589
1230.148
1240.195
1250.223
1260.25
1270.708
1280.0288
1290.998
130.719
1300.917
1310.29
1320.322
1330.19
1340.968
1350.0139
1360.0808
1370.174
1380.539
1390.629
140.799
1400.663
1410.801
1420.56
1430.606
1440.949
1450.617
1460.131
1470.229
1480.886
1490.0649
150.352
1500.973
1510.811
1520.342
1530.106
1540.51
1550.664
1560.491
1570.624
1580.407
1590.307
160.858
1600.916
1610.274
1620.858
1630.115
1640.331
1650.995
1660.454
1670.0391
1680.0713
1690.932
170.88
180.256
190.691
20.432
200.0646
210.06
220.261
230.0603
240.515
250.733
260.148
270.28
280.682
290.609
30.662
300.222
310.207
320.0168
330.642
340.14
350.909
360.949
370.291
380.471
390.807
40.325
400.269
410.277
420.397
430.223
440.107
450.0153
460.821
470.619
480.717
490.363
50.0516
500.932
510.798
520.0285
530.844
540.92
550.903
560.858
570.13
580.226
590.432
60.221
600.0442
610.914
620.396
630.944
640.724
650.113
660.16
670.828
680.902
690.643
70.725
700.248
710.934
720.0027
730.478
740.409
750.663
760.915
770.119
780.437
790.2
80.172
800.525
810.605
820.352
830.805
840.152
850.0555
860.414
870.955
880.599
890.0595
90.217
900.267
910.034
920.249
930.362
940.245
950.873
960.984
970.447
980.755
990.24



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11838


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0000322 (pneumocyte)
0000223 (endodermal cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1325 (bronchus cancer)
3905 (lung carcinoma)
3908 (non-small cell lung carcinoma)
3910 (lung adenocarcinoma)
3904 (bronchogenic carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0004821 (pulmonary alveolus epithelium)
0004903 (bronchoalveolar duct junction)
0000926 (mesoderm)
0000479 (tissue)
0000058 (duct)
0001007 (digestive system)
0000064 (organ part)
0000077 (mixed endoderm/mesoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000025 (tube)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000480 (anatomical group)
0000923 (germ layer)
0003914 (epithelial tube)
0007499 (epithelial sac)
0002050 (embryonic structure)
0004802 (respiratory tract epithelium)
0005153 (epithelial bud)
0005911 (endo-epithelium)
0004921 (subdivision of digestive tract)
0005423 (developing anatomical structure)
0000477 (anatomical cluster)
0000481 (multi-tissue structure)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0009569 (subdivision of trunk)
0005291 (embryonic tissue)
0005178 (thoracic cavity element)
0000487 (simple squamous epithelium)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0003104 (mesenchyme)
0000115 (lung epithelium)
0000464 (anatomical space)
0003215 (alveolus)
0001048 (primordium)
0000925 (endoderm)
0005181 (thoracic segment organ)
0006598 (presumptive structure)
0004185 (endodermal part of digestive tract)
0005157 (epithelial fold)
0009856 (sac)
0002532 (epiblast (generic))
0002299 (alveolus of lung)
0007196 (tracheobronchial tree)
0001555 (digestive tract)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0007026 (primitive gut)
0001041 (foregut)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
0006524 (alveolar system)
0008874 (pulmonary acinus)
0002169 (alveolar sac)
0009142 (entire embryonic mesenchyme)
0004894 (alveolar wall)
0002173 (alveolar duct)
0002186 (bronchiole)
0008947 (respiratory primordium)
0003258 (endoderm of foregut)
0005597 (lung primordium)
0006595 (presumptive endoderm)
0006603 (presumptive mesoderm)
0000118 (lung bud)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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